Pub Date : 2024-05-27eCollection Date: 2024-01-01DOI: 10.1093/iob/obae018
W J Cooper, M R Conith, A J Conith
Surfperches and damselfishes are very closely related ovalentarians with large reproductive differences. Damselfishes are typical of most Ovalentaria in that they lay demersal eggs that hatch into small, free-feeding larvae. Surfperches are unusual among ovalentarians and most acanthomorphs in having prolonged internal development. They are born at an advanced stage, some as adults, and bypass the need to actively feed throughout an extended period of ontogeny. Damselfishes and surfperches possess the same modifications of the fifth branchial arch that allow them to perform advanced food processing within the pharynx. This condition (pharyngognathy) has large effects on the evolution of feeding mechanics and trophic ecology. Although the evolution of pharyngognaths has received considerable attention, the effects of different reproductive strategies on their diversification have not been examined. We compared head shape evolution in surfperches and damselfishes using geometric morphometrics, principal component analyses, and multiple phylogenetic-comparative techniques. We found that they have similar mean head shapes, that their primary axes of shape variation are comparable and distinguish benthic-feeding and pelagic-feeding forms in each case, and that, despite large differences in crown divergence times, their head shape disparities are not significantly different. Several lines of evidence suggest that evolution has been more constrained in damselfishes: Head shape is evolving faster in surfperches, more anatomical traits have undergone correlated evolution in damselfishes, there is significant phylogenetic signal in damselfish evolution (but not surfperches), and damselfishes exhibit significant allometry in head shape that is not present in surfperches.
{"title":"Surfperches versus Damselfishes: Trophic Evolution in Closely Related Pharyngognath Fishes with Highly Divergent Reproductive Strategies.","authors":"W J Cooper, M R Conith, A J Conith","doi":"10.1093/iob/obae018","DOIUrl":"https://doi.org/10.1093/iob/obae018","url":null,"abstract":"<p><p>Surfperches and damselfishes are very closely related ovalentarians with large reproductive differences. Damselfishes are typical of most Ovalentaria in that they lay demersal eggs that hatch into small, free-feeding larvae. Surfperches are unusual among ovalentarians and most acanthomorphs in having prolonged internal development. They are born at an advanced stage, some as adults, and bypass the need to actively feed throughout an extended period of ontogeny. Damselfishes and surfperches possess the same modifications of the fifth branchial arch that allow them to perform advanced food processing within the pharynx. This condition (pharyngognathy) has large effects on the evolution of feeding mechanics and trophic ecology. Although the evolution of pharyngognaths has received considerable attention, the effects of different reproductive strategies on their diversification have not been examined. We compared head shape evolution in surfperches and damselfishes using geometric morphometrics, principal component analyses, and multiple phylogenetic-comparative techniques. We found that they have similar mean head shapes, that their primary axes of shape variation are comparable and distinguish benthic-feeding and pelagic-feeding forms in each case, and that, despite large differences in crown divergence times, their head shape disparities are not significantly different. Several lines of evidence suggest that evolution has been more constrained in damselfishes: Head shape is evolving faster in surfperches, more anatomical traits have undergone correlated evolution in damselfishes, there is significant phylogenetic signal in damselfish evolution (but not surfperches), and damselfishes exhibit significant allometry in head shape that is not present in surfperches.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"6 1","pages":"obae018"},"PeriodicalIF":2.2,"publicationDate":"2024-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11210498/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141467790","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-25eCollection Date: 2024-01-01DOI: 10.1093/iob/obae016
W M Ballentine, K M Dorgan
Meiofauna (benthic invertebrates < 1 mm in size) facilitate sediment biogeochemical cycling, alter sediment microbial community structure, and serve as an important trophic link between benthic micro- and macrofauna, yet the behaviors that mechanistically link individuals to their ecological effects are largely unknown. Meiofauna are small and sediments are opaque, making observing the in situ activities of these animals challenging. We developed the Meioflume, a small, acrylic flow tunnel filled with grains of cryolite, a transparent sand analog, to simulate the in situ conditions experienced by meiofauna in an observable lab environment. The Meioflume has a working area (28.57 mm × 10.16 mm × 1 mm) that is small enough to quickly locate fauna and clearly observe behavior but large enough that animals are not tightly confined. When connected to a syringe press, the Meioflume can produce low velocity flows consistently and evenly across the width of its working area while retaining the contents. To demonstrate its functionality in observing the behavior of meiofauna, we placed individual meiofaunal animals (a protodrilid annelid, a harpacticoid copepod, and a platyhelminth flatworm) in Meioflumes and filmed their behavioral response to a sudden initiation of porewater flow. All animals were clearly visible within the flume and could be observed responding to the onset of flow. The design and construction of the Meioflume make it an accessible, affordable tool for researchers. This experimental system could be modified to address many questions in meiofaunal ecology, such as studying behavior in response to chemical cues, allowing us to observe meiofaunal behaviors to better understand their ecological effects.
{"title":"The Meioflume: A New System for Observing the Interstitial Behavior of Meiofauna.","authors":"W M Ballentine, K M Dorgan","doi":"10.1093/iob/obae016","DOIUrl":"10.1093/iob/obae016","url":null,"abstract":"<p><p>Meiofauna (benthic invertebrates < 1 mm in size) facilitate sediment biogeochemical cycling, alter sediment microbial community structure, and serve as an important trophic link between benthic micro- and macrofauna, yet the behaviors that mechanistically link individuals to their ecological effects are largely unknown. Meiofauna are small and sediments are opaque, making observing the <i>in situ</i> activities of these animals challenging. We developed the Meioflume, a small, acrylic flow tunnel filled with grains of cryolite, a transparent sand analog, to simulate the <i>in situ</i> conditions experienced by meiofauna in an observable lab environment. The Meioflume has a working area (28.57 mm × 10.16 mm × 1 mm) that is small enough to quickly locate fauna and clearly observe behavior but large enough that animals are not tightly confined. When connected to a syringe press, the Meioflume can produce low velocity flows consistently and evenly across the width of its working area while retaining the contents. To demonstrate its functionality in observing the behavior of meiofauna, we placed individual meiofaunal animals (a protodrilid annelid, a harpacticoid copepod, and a platyhelminth flatworm) in Meioflumes and filmed their behavioral response to a sudden initiation of porewater flow. All animals were clearly visible within the flume and could be observed responding to the onset of flow. The design and construction of the Meioflume make it an accessible, affordable tool for researchers. This experimental system could be modified to address many questions in meiofaunal ecology, such as studying behavior in response to chemical cues, allowing us to observe meiofaunal behaviors to better understand their ecological effects.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"6 1","pages":"obae016"},"PeriodicalIF":1.5,"publicationDate":"2024-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177882/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141330852","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-02eCollection Date: 2024-01-01DOI: 10.1093/iob/obae013
K M Gamel, S Pinti, H C Astley
Underwater walking was a crucial step in the evolutionary transition from water to land. Underwater walkers use fins and/or limbs to interact with the benthic substrate and produce propulsive forces. The dynamics of underwater walking remain poorly understood due to the lack of a sufficiently sensitive and waterproof system to measure substrate reaction forces (SRFs). Using an underwater force plate (described in our companion paper), we quantify SRFs during underwater walking in axolotls (Ambystoma mexicanum) and Spot prawn (Pandalus platyceros), synchronized with videography. The horizontal propulsive forces were greater than the braking forces in both species to overcome hydrodynamic drag. In axolotls, potential energy (PE) fluctuations were far smaller than kinetic energy (KE) fluctuations due to high buoyant support (97%), whereas the magnitudes were similar in the prawn due to lower buoyant support (93%). However, both species show minimal evidence of exchange between KE and PE, which, along with the effects of hydrodynamic drag, is incompatible with inverted pendulum dynamics. Our results show that, despite their evolutionary links, underwater walking has fundamentally different dynamics compared with terrestrial walking and emphasize the substantial consequences of differences in body plan in underwater walking.
水下行走是从水中向陆地进化过渡的关键一步。水下步行者利用鳍和/或肢与底栖基质相互作用,产生推进力。由于缺乏足够灵敏和防水的系统来测量底质反作用力(SRFs),人们对水下行走的动力学仍然知之甚少。我们利用水下测力板(详见我们的论文),对斧头鱼(Ambystoma mexicanum)和斑节对虾(Pandalus platyceros)水下行走时的SRF进行了量化,并同步进行了录像。两个物种的水平推进力都大于制动力,以克服水动力阻力。在斧头鱼中,由于高浮力支持(97%),势能(PE)波动远远小于动能(KE)波动,而在对虾中,由于较低的浮力支持(93%),势能(PE)波动的幅度与动能(KE)波动的幅度相似。然而,这两个物种在 KE 和 PE 之间交换的证据极少,再加上流体阻力的影响,这与倒立摆动力学不相容。我们的研究结果表明,尽管两者在进化上有联系,但水下行走的动力学与陆地行走有本质区别,并强调了身体计划的差异对水下行走的重大影响。
{"title":"Ground Reaction Forces and Energy Exchange During Underwater Walking.","authors":"K M Gamel, S Pinti, H C Astley","doi":"10.1093/iob/obae013","DOIUrl":"10.1093/iob/obae013","url":null,"abstract":"<p><p>Underwater walking was a crucial step in the evolutionary transition from water to land. Underwater walkers use fins and/or limbs to interact with the benthic substrate and produce propulsive forces. The dynamics of underwater walking remain poorly understood due to the lack of a sufficiently sensitive and waterproof system to measure substrate reaction forces (SRFs). Using an underwater force plate (described in our companion paper), we quantify SRFs during underwater walking in axolotls (<i>Ambystoma mexicanum</i>) and Spot prawn (<i>Pandalus platyceros</i>), synchronized with videography. The horizontal propulsive forces were greater than the braking forces in both species to overcome hydrodynamic drag. In axolotls, potential energy (PE) fluctuations were far smaller than kinetic energy (KE) fluctuations due to high buoyant support (97%), whereas the magnitudes were similar in the prawn due to lower buoyant support (93%). However, both species show minimal evidence of exchange between KE and PE, which, along with the effects of hydrodynamic drag, is incompatible with inverted pendulum dynamics. Our results show that, despite their evolutionary links, underwater walking has fundamentally different dynamics compared with terrestrial walking and emphasize the substantial consequences of differences in body plan in underwater walking.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"6 1","pages":"obae013"},"PeriodicalIF":2.2,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11191838/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141442551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-02eCollection Date: 2024-01-01DOI: 10.1093/iob/obae014
G Jorgewich-Cohen, I Werneburg, M Jobbins, G S Ferreira, M D Taylor, D Bastiaans, M R Sánchez-Villagra
The hyoid apparatus of tetrapods is highly diverse in its morphology. It plays an important role in feeding, breathing, sound production, and various other behaviors. Among turtles, the diversity of the hyoid apparatus has been recurrently linked to their habitat. The ossification of the hyoid corpus is often the main trait used in correlations with "niche" occupancy, an ossified corpus being associated with aquatic environments and a cartilaginous corpus with terrestrial life. Most studies conducted so far have focused on species belonging to Testudinoidea, the clade that occupies the biggest diversity of habitats (i.e., terrestrial, semi-terrestrial, and aquatic animals), while other turtle lineages have been largely understudied. We assessed the adult anatomy of the hyoid apparatus of 92 turtle species from all "families", together with ossification sequences from embryological series of 11 species, some described for the first time here. Using nearly 40 different discrete anatomical characters, we discuss the evolutionary patterns and the biological significance of morphological transformations in the turtle hyoid elements. Morphological changes are strongly associated to feeding modes, with several instances of convergent evolution within and outside the Testudines clade, and are not as strongly connected to habitat as previously thought. Some of the hyoid character states we describe are diagnostic of specific turtle clades, thus providing phylogenetically relevant information.
{"title":"Morphological Diversity of Turtle Hyoid Apparatus is Linked to Feeding Behavior.","authors":"G Jorgewich-Cohen, I Werneburg, M Jobbins, G S Ferreira, M D Taylor, D Bastiaans, M R Sánchez-Villagra","doi":"10.1093/iob/obae014","DOIUrl":"10.1093/iob/obae014","url":null,"abstract":"<p><p>The hyoid apparatus of tetrapods is highly diverse in its morphology. It plays an important role in feeding, breathing, sound production, and various other behaviors. Among turtles, the diversity of the hyoid apparatus has been recurrently linked to their habitat. The ossification of the hyoid corpus is often the main trait used in correlations with \"niche\" occupancy, an ossified corpus being associated with aquatic environments and a cartilaginous corpus with terrestrial life. Most studies conducted so far have focused on species belonging to Testudinoidea, the clade that occupies the biggest diversity of habitats (i.e., terrestrial, semi-terrestrial, and aquatic animals), while other turtle lineages have been largely understudied. We assessed the adult anatomy of the hyoid apparatus of 92 turtle species from all \"families\", together with ossification sequences from embryological series of 11 species, some described for the first time here. Using nearly 40 different discrete anatomical characters, we discuss the evolutionary patterns and the biological significance of morphological transformations in the turtle hyoid elements. Morphological changes are strongly associated to feeding modes, with several instances of convergent evolution within and outside the Testudines clade, and are not as strongly connected to habitat as previously thought. Some of the hyoid character states we describe are diagnostic of specific turtle clades, thus providing phylogenetically relevant information.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"6 1","pages":"obae014"},"PeriodicalIF":1.5,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11090499/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140916431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-15eCollection Date: 2024-01-01DOI: 10.1093/iob/obae011
J W Peters, K K Duclos, M V H Wilson, T C Grande
Zeiformes (dories, tinselfishes, and oreos) are primarily benthopelagic acanthomorph fishes, distributed between 50 and 1000 m depth on continental slopes and on flanks of oceanic islands and seamounts. Among the interesting morphological adaptations of zeiform fishes are their unique and highly protrusible jaws involving premaxillae with long ascending processes and a four-bar linkage, including mobile palatines that pivot on their posterior articulation. This adaptation for increased jaw protrusion has enabled zeiform fishes to capture elusive prey more efficiently and is arguably a major factor in their morphological diversity and evolutionary success. This study examines the evolution of zeiform jaw morphologies using 3D landmark-based multivariate morphometrics as well as phylomorphospace analysis. Results show that the descendants of the zeiform ancestor branched rapidly early in their history, retaining conservative jaw morphologies during this early branching, but subsequently strongly diverged in many of the resulting lineages. Results from this study are compared with earlier research based on overall body form, demonstrating that morphological variation within Zeiformes arose along at least two distinct trajectories: body form and jaw morphology. Variation among genera in body form is not associated with variation among the same genera in jaw morphology, and vice versa. Hypotheses to explain the apparent decoupling of body shape and jaw morphology are addressed along with avenues for further study to better understand the morphological evolution of these iconic fishes.
{"title":"Morphological Diversity and Evolution of Jaw Morphologies in Zeiform Fishes (Teleostei, Paracanthopterygii).","authors":"J W Peters, K K Duclos, M V H Wilson, T C Grande","doi":"10.1093/iob/obae011","DOIUrl":"10.1093/iob/obae011","url":null,"abstract":"<p><p>Zeiformes (dories, tinselfishes, and oreos) are primarily benthopelagic acanthomorph fishes, distributed between 50 and 1000 m depth on continental slopes and on flanks of oceanic islands and seamounts. Among the interesting morphological adaptations of zeiform fishes are their unique and highly protrusible jaws involving premaxillae with long ascending processes and a four-bar linkage, including mobile palatines that pivot on their posterior articulation. This adaptation for increased jaw protrusion has enabled zeiform fishes to capture elusive prey more efficiently and is arguably a major factor in their morphological diversity and evolutionary success. This study examines the evolution of zeiform jaw morphologies using 3D landmark-based multivariate morphometrics as well as phylomorphospace analysis. Results show that the descendants of the zeiform ancestor branched rapidly early in their history, retaining conservative jaw morphologies during this early branching, but subsequently strongly diverged in many of the resulting lineages. Results from this study are compared with earlier research based on overall body form, demonstrating that morphological variation within Zeiformes arose along at least two distinct trajectories: body form and jaw morphology. Variation among genera in body form is not associated with variation among the same genera in jaw morphology, and vice versa. Hypotheses to explain the apparent decoupling of body shape and jaw morphology are addressed along with avenues for further study to better understand the morphological evolution of these iconic fishes.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"6 1","pages":"obae011"},"PeriodicalIF":1.5,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11090498/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140916427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-13eCollection Date: 2024-01-01DOI: 10.1093/iob/obae007
K E Stanchak, T Deora, A I Weber, M K Hickner, A Moalin, L Abdalla, T L Daniel, B W Brunton
Flight control requires active sensory feedback, and insects have many sensors that help them estimate their current locomotor state, including campaniform sensilla (CS), which are mechanoreceptors that sense strain resulting from deformation of the cuticle. CS on the wing detect bending and torsional forces encountered during flight, providing input to the flight feedback control system. During flight, wings experience complex spatio-temporal strain patterns. Because CS detect only local strain, their placement on the wing is presumably critical for determining the overall representation of wing deformation; however, how these sensilla are distributed across wings is largely unknown. Here, we test the hypothesis that CS are found in stereotyped locations across individuals of Manduca sexta, a hawkmoth. We found that although CS are consistently found on the same veins or in the same regions of the wings, their total number and distribution can vary extensively. This suggests that there is some robustness to variation in sensory feedback in the insect flight control system. The regions where CS are consistently found provide clues to their functional roles, although some patterns might be reflective of developmental processes. Collectively, our results on intraspecific variation in CS placement on insect wings will help reshape our thinking on the utility of mechanosensory feedback for insect flight control and guide further experimental and comparative studies.
{"title":"Intraspecific Variation in the Placement of Campaniform Sensilla on the Wings of the Hawkmoth <i>Manduca Sexta</i>.","authors":"K E Stanchak, T Deora, A I Weber, M K Hickner, A Moalin, L Abdalla, T L Daniel, B W Brunton","doi":"10.1093/iob/obae007","DOIUrl":"10.1093/iob/obae007","url":null,"abstract":"<p><p>Flight control requires active sensory feedback, and insects have many sensors that help them estimate their current locomotor state, including campaniform sensilla (CS), which are mechanoreceptors that sense strain resulting from deformation of the cuticle. CS on the wing detect bending and torsional forces encountered during flight, providing input to the flight feedback control system. During flight, wings experience complex spatio-temporal strain patterns. Because CS detect only local strain, their placement on the wing is presumably critical for determining the overall representation of wing deformation; however, how these sensilla are distributed across wings is largely unknown. Here, we test the hypothesis that CS are found in stereotyped locations across individuals of <i>Manduca sexta</i>, a hawkmoth. We found that although CS are consistently found on the same veins or in the same regions of the wings, their total number and distribution can vary extensively. This suggests that there is some robustness to variation in sensory feedback in the insect flight control system. The regions where CS are consistently found provide clues to their functional roles, although some patterns might be reflective of developmental processes. Collectively, our results on intraspecific variation in CS placement on insect wings will help reshape our thinking on the utility of mechanosensory feedback for insect flight control and guide further experimental and comparative studies.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"6 1","pages":"obae007"},"PeriodicalIF":1.5,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11074993/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140876336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-27eCollection Date: 2024-01-01DOI: 10.1093/iob/obae004
D Ray, E L Sheldon, C Zimmer, L B Martin, A W Schrey
Epigenetic mechanisms are increasingly understood to have major impacts across ecology. However, one molecular epigenetic mechanism, DNA methylation, currently dominates the literature. A second mechanism, histone modification, is likely important to ecologically relevant phenotypes and thus warrants investigation, especially because molecular interplay between methylation and histone acetylation can strongly affect gene expression. There are a limited number of histone acetylation studies on non-model organisms, yet those that exist show that it can impact gene expression and phenotypic plasticity. Wild birds provide an excellent system to investigate histone acetylation, as free-living individuals must rapidly adjust to environmental change. Here, we screen histone acetylation in the house sparrow (Passer domesticus); we studied this species because DNA methylation was important in the spread of this bird globally. This species has one of the broadest geographic distributions in the world, and part of this success is related to the way that it uses methylation to regulate its gene expression. Here, we verify that a commercially available assay that was developed for mammals can be used in house sparrows. We detected high variance in histone acetylation among individuals in both liver and spleen tissue. Further, house sparrows with higher epigenetic potential in the Toll Like Receptor-4 (TLR-4) promoter (i.e., CpG content) had higher histone acetylation in liver. Also, there was a negative correlation between histone acetylation in spleen and TLR-4 expression. In addition to validating a method for measuring histone acetylation in wild songbirds, this study also shows that histone acetylation is related to epigenetic potential and gene expression, adding a new study option for ecological epigenetics.
人们日益认识到表观遗传机制对整个生态学具有重大影响。然而,DNA 甲基化这一分子表观遗传机制目前在文献中占主导地位。第二种机制--组蛋白修饰可能对生态相关表型很重要,因此值得研究,特别是因为甲基化和组蛋白乙酰化之间的分子相互作用会强烈影响基因表达。针对非模式生物的组蛋白乙酰化研究数量有限,但现有研究表明,乙酰化可影响基因表达和表型可塑性。野生鸟类是研究组蛋白乙酰化的绝佳系统,因为自由生活的个体必须迅速适应环境变化。在这里,我们筛选了家雀(Passer domesticus)的组蛋白乙酰化;我们研究这一物种是因为 DNA 甲基化对这种鸟类的全球传播非常重要。家雀是世界上地理分布最广的鸟类之一,其成功部分与家雀利用甲基化调节基因表达的方式有关。在这里,我们验证了一种针对哺乳动物开发的商用检测方法可用于家雀。我们在肝脏和脾脏组织中检测到不同个体之间组蛋白乙酰化的差异很大。此外,在Toll Like Receptor-4(TLR-4)启动子中具有较高表观遗传潜力(即CpG含量)的家雀,其肝脏中的组蛋白乙酰化程度较高。此外,脾脏中的组蛋白乙酰化与 TLR-4 的表达呈负相关。这项研究除了验证了测量野生鸣禽组蛋白乙酰化的方法外,还表明组蛋白乙酰化与表观遗传潜力和基因表达有关,为生态表观遗传学增加了一个新的研究选择。
{"title":"Screening H3 Histone Acetylation in a Wild Bird, the House Sparrow (<i>Passer Domesticus</i>).","authors":"D Ray, E L Sheldon, C Zimmer, L B Martin, A W Schrey","doi":"10.1093/iob/obae004","DOIUrl":"10.1093/iob/obae004","url":null,"abstract":"<p><p>Epigenetic mechanisms are increasingly understood to have major impacts across ecology. However, one molecular epigenetic mechanism, DNA methylation, currently dominates the literature. A second mechanism, histone modification, is likely important to ecologically relevant phenotypes and thus warrants investigation, especially because molecular interplay between methylation and histone acetylation can strongly affect gene expression. There are a limited number of histone acetylation studies on non-model organisms, yet those that exist show that it can impact gene expression and phenotypic plasticity. Wild birds provide an excellent system to investigate histone acetylation, as free-living individuals must rapidly adjust to environmental change. Here, we screen histone acetylation in the house sparrow (<i>Passer domesticus</i>); we studied this species because DNA methylation was important in the spread of this bird globally. This species has one of the broadest geographic distributions in the world, and part of this success is related to the way that it uses methylation to regulate its gene expression. Here, we verify that a commercially available assay that was developed for mammals can be used in house sparrows. We detected high variance in histone acetylation among individuals in both liver and spleen tissue. Further, house sparrows with higher epigenetic potential in the <i>Toll Like Receptor-4 (TLR-4</i>) promoter (i.e., CpG content) had higher histone acetylation in liver. Also, there was a negative correlation between histone acetylation in spleen and <i>TLR-4</i> expression. In addition to validating a method for measuring histone acetylation in wild songbirds, this study also shows that histone acetylation is related to epigenetic potential and gene expression, adding a new study option for ecological epigenetics.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"6 1","pages":"obae004"},"PeriodicalIF":1.5,"publicationDate":"2024-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10956398/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140184401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-15eCollection Date: 2024-01-01DOI: 10.1093/iob/obae001
A M Gunelson, M A Tuong, N L Staub
The presence of androgens in female development is an important, yet often overlooked, topic. We tested for the presence of androgen receptors (ARs) in the dermal glands of male and female Desmognathus brimleyorum, a plethodontid salamander. This species engages in a courtship behavior called the tail-straddling walk. During this process, communication between males and females is hypothesized to be facilitated by pheromones secreted from modified granular glands (MGGs) on the dorsal tail base, where the female's chin is positioned. These glands are present not only dorsally but also laterally and ventrally on the tail of both males and females. Using immunohistochemistry with a polyclonal antibody, ARs were located in the MGGs of both sexes. Males had a higher percentage of immunopositive cells per MGG than females. The presence of ARs in both sexes highlights the similarity between MGGs in males and females and suggests androgens play a role in female gland function. Furthermore, our results suggest courtship communication is bidirectional, and females have a more active role, signaling the male, than previously described.
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Animals within a population may show distinct behavioral types that differ consistently among individuals over time and across contexts, collectively known as animal personality. Individual state variables arising from intrinsic features of organisms and their interactions with the environment may contribute to or aid in maintaining these interindividual behavioral differences. The present study examined the effects of the body mass, body condition, flight morphology, and parasite load on the personality traits of bent-wing bats Miniopterus fuliginosus. We assessed the bats in three testing contexts, hole-board box (HB), tunnel-box (TB), and flight-tent (FT), that mimicked their natural environmental settings and allowed for different locomotion modes. A PCA analysis loaded the three mutually positively correlated personality traits of the bats, boldness, activity, and exploration, in each context onto a single component of proactiveness. In accordance with the AIC criteria, the sex, body mass, body condition index (BCI), and wingtip shape were selected as predictors for the proactiveness of the bats in the TB and FT tests. In the HB tests, the biomass and abundances of parasitic bat flies were additionally selected but body condition was excluded. We found a negative effect of the body mass on the proactiveness of the female bats in both the HB and FT tests, and that on the proactiveness of the male bats in the HB tests but not so in the FT tests. The sexual differences and negative correlation between the body mass of the bats and their proactive responsiveness are consistent with the mechanism of state-dependent energy assimilation efficiency. Our results may also concur with the predicted feedback mechanism stemming from the characteristic conditions associated with the environment of the bats. This latter inference offers insights for exploring the patterns of personality traits along gradients or seasonality of ecological conditions.
一个种群中的动物可能会表现出不同的行为类型,这些行为类型在不同时间和不同环境下在个体间存在一致的差异,统称为动物个性。生物的内在特征及其与环境的相互作用所产生的个体状态变量可能会导致或帮助维持这些个体间的行为差异。本研究考察了体重、身体状况、飞行形态和寄生虫负荷对弯翅蝙蝠(Miniopterus fuliginosus)个性特征的影响。我们在孔板箱(HB)、隧道箱(TB)和飞行帐篷(FT)三种测试环境中对蝙蝠进行了评估,这些测试环境模拟了蝙蝠的自然环境,并允许蝙蝠采用不同的运动模式。PCA 分析将每种环境中蝙蝠的三个相互正相关的个性特征(大胆、活跃和探索)加载到一个单一的主动性成分上。根据AIC标准,在TB和FT测试中,性别、体重、身体状况指数(BCI)和翼尖形状被选为蝙蝠主动性的预测因子。在 HB 检验中,寄生蝠蝇的生物量和丰度也被选中,但身体状况被排除在外。我们发现,在 HB 和 FT 试验中,体重对雌性蝙蝠的主动性有负作用;在 HB 试验中,体重对雄性蝙蝠的主动性有负作用,而在 FT 试验中则没有。蝙蝠的性别差异及其体重与主动反应性之间的负相关与能量同化效率的状态依赖机制是一致的。我们的结果也可能与蝙蝠所处环境的特征条件所产生的反馈机制相吻合。后一种推论为探索生态条件梯度或季节性的个性特征模式提供了启示。
{"title":"Sex and State-Dependent Effects on Proactive Behaviors of Bent-Wing Bats Across Contexts","authors":"Y-J Kuo, Y-F Lee, Y-M Kuo, Y. L. Tai","doi":"10.1093/iob/obad041","DOIUrl":"https://doi.org/10.1093/iob/obad041","url":null,"abstract":"\u0000 Animals within a population may show distinct behavioral types that differ consistently among individuals over time and across contexts, collectively known as animal personality. Individual state variables arising from intrinsic features of organisms and their interactions with the environment may contribute to or aid in maintaining these interindividual behavioral differences. The present study examined the effects of the body mass, body condition, flight morphology, and parasite load on the personality traits of bent-wing bats Miniopterus fuliginosus. We assessed the bats in three testing contexts, hole-board box (HB), tunnel-box (TB), and flight-tent (FT), that mimicked their natural environmental settings and allowed for different locomotion modes. A PCA analysis loaded the three mutually positively correlated personality traits of the bats, boldness, activity, and exploration, in each context onto a single component of proactiveness. In accordance with the AIC criteria, the sex, body mass, body condition index (BCI), and wingtip shape were selected as predictors for the proactiveness of the bats in the TB and FT tests. In the HB tests, the biomass and abundances of parasitic bat flies were additionally selected but body condition was excluded. We found a negative effect of the body mass on the proactiveness of the female bats in both the HB and FT tests, and that on the proactiveness of the male bats in the HB tests but not so in the FT tests. The sexual differences and negative correlation between the body mass of the bats and their proactive responsiveness are consistent with the mechanism of state-dependent energy assimilation efficiency. Our results may also concur with the predicted feedback mechanism stemming from the characteristic conditions associated with the environment of the bats. This latter inference offers insights for exploring the patterns of personality traits along gradients or seasonality of ecological conditions.","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"30 3","pages":""},"PeriodicalIF":1.5,"publicationDate":"2023-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138954692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-15eCollection Date: 2023-01-01DOI: 10.1093/iob/obad040
[This corrects the article DOI: 10.1093/iob/obad035.].
[此处更正了文章 DOI:10.1093/iob/obad035]。
{"title":"Correction to: Evolutionary Patterns of Modularity in the Linkage Systems of the Skull in Wrasses and Parrotfish.","authors":"","doi":"10.1093/iob/obad040","DOIUrl":"https://doi.org/10.1093/iob/obad040","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1093/iob/obad035.].</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":"5 1","pages":"obad040"},"PeriodicalIF":1.5,"publicationDate":"2023-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10723849/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138794287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}