Integrative Organismal Biology最新文献

We review the two-joint link model of mono- and bi-articular muscles in the human branchium and thigh for applications related to biomechanical studies of tetrapod locomotion including gait analyses of humans and non-human tetrapods. This model has been proposed to elucidate functional roles of human mono- and bi-articular muscles by analyzing human limb movements biomechanically and testing the results both theoretically and mechanically using robotic arms and legs. However, the model has not yet been applied to biomechanical studies of tetrapod locomotion, in part since it was established based mainly on mechanical engineering analyses and because it has been applied mostly to robotics, fields of mechanical engineering, and to rehabilitation sciences. When we discovered and published the identical pairs of mono- and bi-articular muscles in pectoral fins of the coelacanth fish Latimeria chalumnae to those of humans, we recognized the significant roles of mono- and bi-articular muscles in evolution of tetrapod limbs from paired fins and tetrapod limb locomotion. Therefore, we have been reviewing the theoretical background and mechanical parameters of the model in order to analyze functional roles of mono- and bi-articular muscles in tetrapod limb locomotion. Herein, we present re-defined biological parameters including 3 axes among 3 joints of forelimbs or hindlimbs that the model has formulated and provide biological and analytical tools and examples to facilitate applicable power of the model to our on-going gait analyses of humans and tetrapods.

Extreme abiotic factors in deep-sea environments, such as near-freezing temperatures, low light, and high hydrostatic pressure, drive the evolution of adaptations that allow organisms to survive under these conditions. Pelagic and benthopelagic fishes that have invaded the deep sea face physiological challenges from increased compression of gasses at depth, which limits the use of gas cavities as a buoyancy aid. One adaptation observed in deep-sea fishes to increase buoyancy is a decrease of high-density tissues. In this study, we analyze mineralization of high-density skeletal tissue in rattails (family Macrouridae), a group of widespread benthopelagic fishes that occur from surface waters to greater than 7000 m depth. We test the hypothesis that rattail species decrease bone density with increasing habitat depth as an adaptation to maintaining buoyancy while living under high hydrostatic pressures. We performed micro-computed tomography (micro-CT) scans on 15 species and 20 specimens of rattails and included two standards of known hydroxyapatite concentration (phantoms) to approximate voxel brightness to bone density. Bone density was compared across four bones (eleventh vertebra, lower jaw, pelvic girdle, and first dorsal-fin pterygiophore). On average, the lower jaw was significantly denser than the other bones. We found no correlation between bone density and depth or between bone density and phylogenetic relationships. Instead, we observed that bone density increases with increasing specimen length within and between species. This study adds to the growing body of work that suggests bone density can increase with growth in fishes, and that bone density does not vary in a straightforward way with depth.

Batoid fishes (rays, skates, sawfishes, and guitarfishes) are macrosmatic, meaning they rely on their sense of smell as one of the primary senses for survival and reproduction. Olfaction is important for long-distance tracking and navigation, predator and prey recognition, and conspecific signaling. However, the mechanisms by which batoids harness odorants is unknown. Without a direct pump-like system, it is hypothesized that batoids irrigate their nostrils via one or a combination of the following: the motion pump, buccopharyngeal pump, pressure (ex. pitot-like mechanism), or a shearing force (ex. viscous entrainment). These mechanisms rely on the size, shape, and position of the nostrils with respect to the head and to each other. Batoids are united as a group by their dorsoventrally compressed body plans, with nostrils on the ventral side of their body. This position presents several challenges for odor capture and likely limits the effectivity of the motion pump. Batoid fishes display an expansive nasal morphology, with inlet nostrils ranging from thin, vertical slits to wide, horizontal ovals to protruding, tube-like funnels, and more. In this paper, a morphometric model is developed to quantify the vast diversity in batoid nose shapes, sizes, and positions on the head in an ecological and functional framework. Specifically, swimming mode, lifestyle, habitat, and diet are examined for correlations with observed nasal morphotypes. Morphometric measurements were taken on all 4 orders present in Batoidea to broadly encompass batoid nasal diversity (Rhinopristiformes 4/5 families; Rajiformes 2/4 families; Torpediniformes 4/4 families; Myliobatiformes 8/11 families). All batoid external nasal diversity was found to be categorized into 5 major morphological groups and were termed: flush nare [circle, comma, intermediate], open nare, and protruding nare. Several morphometric traits remained significant when accounting for shared ancestry, including the position and angle of the nostril on the head, the width of the inlet hole, and the spacing of the nostrils from each other. These measurements were found to be closely correlated and statistically significant with the swimming mode of the animal. This study provides the first crucial step in understanding batoid olfaction, by understanding the diversity of the morphology of the system. Because odor capture is a strictly hydrodynamic process, it may be that factors relating more directly to the fluid dynamics (i.e., swimming mode, velocity, Reynolds number) may be more important in shaping the evolution of the diversity of batoid noses than other ecological factors like habitat and diet.

Climate change is increasing both environmental temperatures and droughts. Many ectotherms respond behaviorally to heat, thereby avoiding damage from extreme temperatures. Within species, thermal tolerance varies with factors such as hydration as well as ontogenetic stage. Many tropical anurans lay terrestrial eggs, relying on environmental moisture for embryonic development. These eggs are vulnerable to dehydration, and embryos of some species can hatch prematurely to escape from drying eggs. Warmer temperatures can accelerate development and thus hatching, but excess heat can kill embryos. Thus, we hypothesize that embryos may show a behavioral thermal tolerance limit, hatching prematurely to avoid potentially lethal warming. If so, because warming and drying are often associated, we hypothesize this limit, measurable as a voluntary thermal maximum, may depend on hydration. We manipulated the hydration of the terrestrial eggs of Agalychnis callidryas, in intact clutches and egg-groups isolated from clutch jelly, then warmed them to assess if embryos hatch early as a behavioral response to high temperatures and whether their thermal tolerance varies with hydration or surrounding structure. We discovered that heating induces hatching; these embryos show a behavioral escape-hatching response that enables them to avoid potentially lethal warming. Hydrated eggs and clutches lost more water and warmed more slowly than dehydrated ones, indicating that hydration buffers embryos from environmental warming via evaporative cooling. Embryos in hydrated clutches tolerated greater warming before hatching and suffered higher mortality, suggesting their behavioral Thermal Safety Margin is small. In contrast, lower thermal tolerance protected dry embryos, and those isolated from clutch jelly, from lethal warming. Heat-induced hatching offers a convenient behavioral assay for the thermal tolerance of terrestrial anuran embryos and the interactive effects of warming and dehydration at an early life stage. This work expands the set of threats against which embryos use hatching in self-defense, creating new opportunities for comparative studies of thermal tolerance as well as integrative studies of self-defense mechanisms at the egg stage.

Fish gastro-intestinal system harbors diverse microbiomes that affect the host's digestion, nutrition, and immunity. Despite the great taxonomic diversity of fish, little is understood about fish microbiome and the factors that determine its structure and composition. Damselfish are important coral reef species that play pivotal roles in determining algae and coral population structures of reefs. Broadly, damselfish belong to either of two trophic guilds based on whether they are planktivorous or algae-farming. In this study, we used 16S rRNA gene sequencing to investigate the intestinal microbiome of 5 planktivorous and 5 algae-farming damselfish species (Pomacentridae) from the Great Barrier Reef. We detected Gammaproteobacteria ASVs belonging to the genus Actinobacillus in 80% of sampled individuals across the 2 trophic guilds, thus, bacteria in this genus can be considered possible core members of pomacentrid microbiomes. Algae-farming damselfish had greater bacterial alpha-diversity, a more diverse core microbiome and shared 35 ± 22 ASVs, whereas planktivorous species shared 7 ± 3 ASVs. Our data also highlight differences in microbiomes associated with both trophic guilds. For instance, algae-farming damselfish were enriched in Pasteurellaceae, whilst planktivorous damselfish in Vibrionaceae. Finally, we show shifts in bacterial community composition along the intestines. ASVs associated with the classes Bacteroidia, Clostridia, and Mollicutes bacteria were predominant in the anterior intestinal regions while Gammaproteobacteria abundance was higher in the stomach. Our results suggest that the richness of the intestinal bacterial communities of damselfish reflects host species diet and trophic guild.

Research on insect flight control has focused primarily on the role of wings. Yet abdominal deflections during flight can potentially influence the dynamics of flight. This paper assesses the role of airframe deformations in flight, and asks to what extent the abdomen contributes to flight maneuverability. To address this, we use a combination of both a Model Predictive Control (MPC)-inspired computational inertial dynamics model, and free flight experiments in the hawkmoth, Manduca sexta. We explored both underactuated (i.e., number of outputs are greater than the number of inputs) and fully actuated (equal number of outputs and inputs) systems. Using metrics such as the non-dimensionalized tracking error and cost of transport to evaluate flight performance of the inertial dynamics model, we show that fully actuated simulations minimized the tracking error and cost of transport. Additionally, we tested the effect of restricted abdomen movement on free flight in live hawkmoths by fixing a carbon fiber rod over the thoracic-abdomen joint. Moths with a restricted abdomen performed worse than sham treatment moths. This study finds that abdominal motions contribute to flight control and maneuverability. Such motions of non-aerodynamic structures, found in all flying taxa, can inform the development of multi-actuated micro air vehicles.

The force-generating capacity of muscle depends upon many factors including the actin-myosin filament overlap due to the relative length of the sarcomere. Consequently, the force output of a muscle may vary throughout its range of motion, and the body posture allowing maximum force generation may differ even in otherwise similar species. We hypothesized that corn snakes would show an ontogenetic shift in sarcomere length range from being centered on the plateau of the length-tension curve in small individuals to being on the descending limb in adults. Sarcomere lengths across the plateau would be advantageous for locomotion, while the descending limb would be advantageous for constriction due to the increase in force as the coil tightens around the prey. To test this hypothesis, we collected sarcomere lengths from freshly euthanized corn snakes, preserving segments in straight and maximally curved postures, and quantifying sarcomere length via light microscopy. We dissected 7 muscles (spinalis, semispinalis, multifidus, longissimus dorsi, iliocostalis (dorsal and ventral), and levator costae) in an ontogenetic series of corn snakes (mass = 80-335 g) at multiple regions along the body (anterior, middle, and posterior). Our data shows all of the muscles analyzed are on the descending limb of the length-tension curve at rest across all masses, regions, and muscles analyzed, with muscles shortening onto or past the plateau when flexed. While these results are consistent with being advantageous for constriction at all sizes, there could also be unknown benefits of this sarcomere arrangement for locomotion or striking.

Although gigantic body size and obligate filter feeding mechanisms have evolved in multiple vertebrate lineages (mammals and fishes), intermittent ram (lunge) filter feeding is unique to a specific family of baleen whales: rorquals. Lunge feeding is a high cost, high benefit feeding mechanism that requires the integration of unsteady locomotion (i.e., accelerations and maneuvers); the impact of scale on the biomechanics and energetics of this foraging mode continues to be the subject of intense study. The goal of our investigation was to use a combination of multi-sensor tags paired with UAS footage to determine the impact of morphometrics such as body size on kinematic lunging parameters such as fluking timing, maximum lunging speed, and deceleration during the engulfment period for a range of species from minke to blue whales. Our results show that, in the case of krill-feeding lunges and regardless of size, animals exhibit a skewed gradient between powered and fully unpowered engulfment, with fluking generally ending at the point of both the maximum lunging speed and mouth opening. In all cases, the small amounts of propulsive thrust generated by the tail were unable to overcome the high drag forces experienced during engulfment. Assuming this thrust to be minimal, we predicted the minimum speed of lunging across scale. To minimize the energetic cost of lunge feeding, hydrodynamic theory predicts slower lunge feeding speeds regardless of body size, with a lower boundary set by the ability of the prey to avoid capture. We used empirical data to test this theory and instead found that maximum foraging speeds remain constant and high (∼4 m s^-1) across body size, even as higher speeds result in lower foraging efficiency. Regardless, we found an increasing relationship between body size and this foraging efficiency, estimated as the ratio of energetic gain from prey to energetic cost. This trend held across timescales ranging from a single lunge to a single day and suggests that larger whales are capturing more prey-and more energy-at a lower cost.

Snakes are a phylogenetically diverse (> 3500 species) clade of gape-limited predators that consume diverse prey and have considerable ontogenetic and interspecific variation in size, but empirical data on maximal gape are very limited. To test how overall size predicts gape, we quantified the scaling relationships between maximal gape, overall size, and several cranial dimensions for a wide range of sizes (mass 8-64,100 g) for two large, invasive snake species: Burmese pythons (Python molorus bivittatus) and brown treesnakes (Boiga irregularis). Although skull size scaled with negative allometry relative to overall size, isometry and positive allometry commonly occurred for other measurements. For similar snout-vent lengths (SVL), the maximal gape areas of Burmese pythons were approximately 4-6 times greater than those of brown treesnakes, mainly as a result of having a significantly larger relative contribution to gape by the intermandibular soft tissues (43% vs. 17%). In both snake species and for all types of prey, the scaling relationships predicted that relative prey mass (RPM) at maximal gape decreased precipitously with increased overall snake size. For a given SVL or mass, the predicted maximal values of RPM of the Burmese pythons exceeded those of brown treesnakes for all prey types, and predicted values of RPM were usually least for chickens, greatest for limbed reptiles and intermediate for mammals. The pythons we studied are noteworthy for having large overall size and gape that is large even after correcting for overall size, both of which could facilitate some large individuals (SVL = 5 m) exploiting very large vertebrate prey (e.g., deer > 50 kg). Although brown treesnakes had longer quadrate bones, Burmese pythons had larger absolute and larger relative gape as a combined result of larger overall size, larger relative head size, and most importantly, greater stretch of the soft tissues.