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The role of SARS-CoV-2 aerosol transmission during the COVID-19 pandemic 新冠肺炎大流行期间SARS-CoV-2气溶胶传播的作用
IF 4.4 3区 生物学 Q1 BIOLOGY Pub Date : 2022-02-11 DOI: 10.1098/rsfs.2022.0003
Julian W. Tang, L. Marr, Yuguo Li, Ian Eames
The COVID-19 pandemic, caused by the virus SARS-CoV-2, has touched most parts of the world and devastated the lives of many. The high transmissibility coupled with the initial poor outcome for the elderly led to crushingly high fatalities. The scientific response to the pandemic has been formidable, aided by advancements in virology, computing, data analysis, instrumentation, diagnostics, engineering and infection control. This has led to improvements in understanding and has helped to challenge some established orthodoxies. Sufficient time has elapsed since the start of the COVID-19 pandemic that a clearer view has emerged about transmission and infection risks, public health responses and related societal and economic impacts. This timely volume has provided an opportunity for the science community to report on these new developments.
由SARS-CoV-2病毒引起的新冠肺炎大流行已经波及世界大部分地区,并摧毁了许多人的生活。高传播性加上最初对老年人的不良影响,导致了极高的死亡人数。在病毒学、计算、数据分析、仪器仪表、诊断、工程和感染控制方面的进步的帮助下,对这一流行病的科学反应是艰巨的。这导致了理解的改善,并有助于挑战一些既定的正统观念。自新冠肺炎大流行开始以来,已经有足够的时间对传播和感染风险、公共卫生应对措施以及相关的社会和经济影响有了更清晰的认识。这本及时的书为科学界提供了一个报告这些新进展的机会。
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引用次数: 2
COVID-19: the case for aerosol transmission. COVID-19:气溶胶传播的案例。
IF 4.4 3区 生物学 Q1 BIOLOGY Pub Date : 2022-02-11 eCollection Date: 2022-04-06 DOI: 10.1098/rsfs.2021.0072
Raymond Tellier

The COVID-19 pandemic is the most severe pandemic caused by a respiratory virus since the 1918 influenza pandemic. As is the case with other respiratory viruses, three modes of transmission have been invoked: contact (direct and through fomites), large droplets and aerosols. This narrative review makes the case that aerosol transmission is an important mode for COVID-19, through reviewing studies about bioaerosol physiology, detection of infectious SARS-CoV-2 in exhaled bioaerosols, prolonged SARS-CoV-2 infectivity persistence in aerosols created in the laboratory, detection of SARS-CoV-2 in air samples, investigation of outbreaks with manifest involvement of aerosols, and animal model experiments. SARS-CoV-2 joins influenza A virus as a virus with proven pandemic capacity that can be spread by the aerosol route. This has profound implications for the control of the current pandemic and for future pandemic preparedness.

新冠肺炎大流行是自1918年流感大流行以来由呼吸道病毒引起的最严重的大流行。与其他呼吸道病毒一样,有三种传播模式:接触(直接和通过飞沫)、大飞沫和气溶胶。这篇叙述性综述通过回顾关于生物气溶胶生理学的研究、呼出生物气溶胶中传染性SARS-CoV-2的检测、实验室产生的气溶胶中延长的SARS-CoV-2传染性持久性、,气溶胶明显参与的疫情调查和动物模型实验。严重急性呼吸系统综合征冠状病毒2型与甲型流感病毒一样,是一种已被证明具有大流行能力的病毒,可以通过气溶胶途径传播。这对控制当前的大流行病和未来的大流行病准备工作具有深远影响。
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引用次数: 40
Combined multiple transcriptional repression mechanisms generate ultrasensitivity and oscillations 多种转录抑制机制的结合产生超敏感性和振荡
IF 4.4 3区 生物学 Q1 BIOLOGY Pub Date : 2022-01-22 DOI: 10.1098/rsfs.2021.0084
Euihwan Jeong, Y. Song, Jae Kyoung Kim
Transcriptional repression can occur via various mechanisms, such as blocking, sequestration, and displacement. For instance, the repressors can hold the activators to prevent binding with DNA or can bind to the DNA-bound activators to block their transcriptional activity. Although the transcription can be completely suppressed with a single mechanism, multiple repression mechanisms are utilized together to inhibit transcriptional activators in many systems, such as circadian clocks and NF-κB oscillators. This raises the question of what advantages arise if seemingly redundant repression mechanisms are combined. Here, by deriving equations describing the multiple repression mechanisms, we find that their combination can synergistically generate a sharply ultrasensitive transcription response and thus strong oscillations. This rationalizes why the multiple repression mechanisms are used together in various biological oscillators. The critical role of such combined transcriptional repression for strong oscillations is further supported by our analysis of formerly identified mutations disrupting the transcriptional repression of the mammalian circadian clock. The hitherto unrecognized source of the ultrasensitivity, the combined transcriptional repressions, can lead to robust synthetic oscillators with a previously unachievable simple design.
转录抑制可以通过各种机制发生,如阻断、螯合和置换。例如,阻遏物可以保持激活剂以防止与DNA结合,或者可以与DNA结合的激活剂结合以阻断其转录活性。尽管转录可以通过单一机制被完全抑制,但在许多系统中,如昼夜节律时钟和NF-κB振荡器,多种抑制机制被共同用于抑制转录激活因子。这就提出了一个问题,如果将看似多余的镇压机制结合起来,会产生什么好处。在这里,通过推导描述多种抑制机制的方程,我们发现它们的组合可以协同产生非常灵敏的转录反应,从而产生强烈的振荡。这就解释了为什么在各种生物振荡器中同时使用多种抑制机制。我们对先前发现的破坏哺乳动物昼夜节律钟转录抑制的突变的分析进一步支持了这种联合转录抑制对强振荡的关键作用。迄今为止尚未认识到的超敏感性来源,即联合转录抑制,可以通过以前无法实现的简单设计产生强大的合成振荡器。
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引用次数: 5
Porous surfaces: stability and recovery of coronaviruses. 多孔表面:冠状病毒的稳定性和恢复。
IF 4.4 3区 生物学 Q1 BIOLOGY Pub Date : 2021-12-10 eCollection Date: 2022-02-06 DOI: 10.1098/rsfs.2021.0039
Lucy Owen, Maitreyi Shivkumar, Richard B M Cross, Katie Laird

The role of indirect contact in the transmission of SARS-CoV-2 is not clear. SARS-CoV-2 persists on dry surfaces for hours to days; published studies have largely focused on hard surfaces with less research being conducted on different porous surfaces, such as textiles. Understanding the potential risks of indirect transmission of COVID-19 is useful for settings where there is close contact with textiles, including healthcare, manufacturing and retail environments. This article aims to review current research on porous surfaces in relation to their potential as fomites of coronaviruses compared to non-porous surfaces. Current methodologies for assessing the stability and recovery of coronaviruses from surfaces are also explored. Coronaviruses are often less stable on porous surfaces than non-porous surfaces, for example, SARS-CoV-2 persists for 0.5 h-5 days on paper and 3-21 days on plastic; however, stability is dependent on the type of surface. In particular, the surface properties of textiles differ widely depending on their construction, leading to variation in the stability of coronaviruses, with longer persistence on more hydrophobic materials such as polyester (1-3 days) compared to highly absorbent cotton (2 h-4 days). These findings should be considered where there is close contact with potentially contaminated textiles.

间接接触在传播 SARS-CoV-2 中的作用尚不清楚。SARS-CoV-2 可在干燥表面存活数小时至数天;已发表的研究主要集中在硬表面,对纺织品等不同多孔表面的研究较少。了解 COVID-19 间接传播的潜在风险对于与纺织品有密切接触的环境(包括医疗保健、制造和零售环境)非常有用。本文旨在回顾目前关于多孔表面的研究,与无孔表面相比,多孔表面有可能成为冠状病毒的滋生地。文章还探讨了目前评估冠状病毒稳定性和从表面回收冠状病毒的方法。冠状病毒在多孔表面上的稳定性通常低于无孔表面,例如,SARS-CoV-2 在纸张上可存活 0.5 小时至 5 天,在塑料上可存活 3 至 21 天;不过,稳定性取决于表面类型。特别是,纺织品的表面特性因其结构不同而有很大差异,导致冠状病毒的稳定性也不同,在涤纶等疏水性较强的材料上(1-3 天)与在高吸水性的棉布上(2 小时-4 天)相比,冠状病毒在涤纶等疏水性较强的材料上的持续时间更长。在密切接触可能受污染的纺织品时,应考虑这些发现。
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引用次数: 0
Contact transmission of SARS-CoV-2 on fomite surfaces: surface survival and risk reduction. SARS-CoV-2在酵母表面的接触传播:表面存活与风险降低。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2021-12-10 eCollection Date: 2022-02-06 DOI: 10.1098/rsfs.2021.0042
Abhimanyu Tharayil, R Rajakumari, Miran Mozetic, Gregor Primc, Sabu Thomas

There is an unprecedented concern regarding the viral strain SARS-CoV-2 and especially its respiratory disease more commonly known as COVID-19. SARS-CoV-2 virus has the ability to survive on different surfaces for extended periods, ranging from days up to months. The new infectious properties of SARS-CoV-2 vary depending on the properties of fomite surfaces. In this review, we summarize the risk factors involved in the indirect transmission pathways of SARS-CoV-2 strains on fomite surfaces. The main mode of indirect transmission is the contamination of porous and non-porous inanimate surfaces such as textile surfaces that include clothes and most importantly personal protective equipment like personal protective equipment kits, masks, etc. In the second part of the review, we highlight materials and processes that can actively reduce the SARS-CoV-2 surface contamination pattern and the associated transmission routes. The review also focuses on some general methodologies for designing advanced and effective antiviral surfaces by physical and chemical modifications, viral inhibitors, etc.

人们对 SARS-CoV-2 病毒株,特别是其通常被称为 COVID-19 的呼吸道疾病空前关注。SARS-CoV-2 病毒能够在不同的物体表面存活很长时间,从几天到几个月不等。SARS-CoV-2 病毒的新感染特性因寄生体表面的特性而异。在这篇综述中,我们总结了 SARS-CoV-2 株在 fomite 表面间接传播途径所涉及的风险因素。间接传播的主要方式是污染多孔和无孔的无生命表面,如纺织品表面,包括衣服和最重要的个人防护装备,如个人防护装备包、口罩等。在综述的第二部分,我们将重点介绍能有效减少 SARS-CoV-2 表面污染模式和相关传播途径的材料和工艺。综述还重点介绍了通过物理和化学改性、病毒抑制剂等方法设计先进有效的抗病毒表面的一些一般方法。
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引用次数: 0
Editorial: theme issue on coronavirus and surfaces 社论:关于冠状病毒和表面的主题问题
IF 4.4 3区 生物学 Q1 BIOLOGY Pub Date : 2021-12-10 DOI: 10.1098/rsfs.2021.0081
Mohan Edirisinghe OBE
Since the publication of the headline review on ‘Surface interactions and viability of coronaviruses' in Journal of the Royal Society Interface in January 2021 (https://doi.org/10.1098/rsif.2020.0798), it has been my earnest desire to focus the minds of the scientific community on the role played by surfaces in the spread of COVID-19, especially the input physical sciences and engineering can impart to decelerate the spread of this disease worldwide. In fact, fig. 4 of the above-mentioned review clearly illustrated how persistence and viability of different coronavirus strains were dependent on widely used material surfaces. I thought the best way to achieve this goal on this rather complex and novel scientific issue was to put together a concise theme issue in Interface Focus where we bring together the opinions of a few internationally leading researchers on this important topic to collectively reduce the burden of COVID-19. Coronavirus and surfaces, the theme of this issue, is of utmost importance to many commercially significant industries such as packaging, textiles and metal forming. As the virus mutates and alters its anchoring and survival capabilities, this theme on coronavirus and surfaces will become more important, so we need to focus on this theme scientifically and methodically, with utmost urgency.
自2021年1月《皇家学会界面杂志》发表关于“冠状病毒的表面相互作用和生存能力”的标题评论以来(https://doi.org/10.1098/rsif.2020.0798),我一直热切希望将科学界的注意力集中在表面在新冠肺炎传播中所起的作用上,尤其是物理科学和工程可以为减缓这种疾病在全球的传播提供投入。事实上,上述综述的图4清楚地说明了不同冠状病毒株的持久性和生存能力如何依赖于广泛使用的材料表面。我认为,在这个相当复杂和新颖的科学问题上实现这一目标的最佳方法是在界面焦点中提出一个简洁的主题问题,我们将一些国际领先研究人员对这一重要主题的意见汇集在一起,共同减轻新冠肺炎的负担。冠状病毒和表面,这一问题的主题,对包装、纺织和金属成型等许多具有商业意义的行业至关重要。随着病毒变异并改变其锚定和生存能力,关于冠状病毒和表面的这一主题将变得更加重要,因此我们需要科学、有条理地、最紧迫地关注这一主题。
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引用次数: 1
Imagining pandemics now, and then: a century of medical failure. 想象一下现在和那时的流行病:一个世纪的医疗失败。
IF 4.4 3区 生物学 Q1 BIOLOGY Pub Date : 2021-12-06 DOI: 10.1098/rsfs.2021.0029
Mark Honigsbaum

Ever since the devastating 1918-1919 influenza pandemic, policy makers have employed mathematical models to predict the course of epidemics and pandemics in an effort to mitigate their worst impacts. But while Britain has long been a pioneer of predictive epidemiology and disease modellers occupied influential positions on key committees that advised the government on its response to the coronavirus pandemic, as in 1918 Britain mounted one of the least effective responses to Covid-19 of any country in the world. Arguing that this 'failure of expertise' was the result of medical and political complacency and over-reliance on disease models predicated on influenza, this paper uses the lens of medical history to show how medical attitudes to Covid-19 mirrored those of the English medical profession in 1918. Rather than putting our faith in preventive medicine and statistical technologies to predict the course of epidemics and dictate suppressive measures in future, I argue we need to cultivate more profound forms of imaginative engagement with infectious disease outbreaks that take account of the long history of quarantines and the lived experiences of pandemics. A useful starting point would be to recognize that while measures such as the R° may be useful for calculating the reproductive rate of a virus, they can never capture the full risks of pandemics or their social complexity.

自1918-1919年毁灭性的流感大流行以来,决策者一直采用数学模型来预测流行病和大流行的进程,以减轻其最严重的影响。但是,尽管英国长期以来一直是预测流行病学的先驱,疾病建模者在向政府提供应对冠状病毒大流行建议的关键委员会中占据了有影响力的位置,但在1918年,英国对Covid-19的反应是世界上任何国家中最不有效的之一。本文认为,这种“专业知识的失败”是医学和政治上的自满情绪以及过度依赖基于流感的疾病模型的结果,本文使用医学史的镜头来展示医学对Covid-19的态度如何反映了1918年英国医学界的态度。我认为,我们不应该把信心寄托在预防医学和统计技术上,以预测流行病的进程,并规定未来的抑制措施,我们需要培养更深刻的、富有想象力的参与方式,考虑到隔离的悠久历史和流行病的亲身经历。一个有益的出发点是认识到,虽然诸如R°之类的措施可能有助于计算病毒的繁殖率,但它们永远无法捕捉到大流行病的全部风险或其社会复杂性。
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引用次数: 1
Disease transmission and control modelling at the science-policy interface. 科学-政策界面的疾病传播和控制模型。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2021-10-12 eCollection Date: 2021-12-06 DOI: 10.1098/rsfs.2021.0013
Ruth McCabe, Christl A Donnelly

The coronavirus disease 2019 (COVID-19) pandemic has disrupted the lives of billions across the world. Mathematical modelling has been a key tool deployed throughout the pandemic to explore the potential public health impact of an unmitigated epidemic. The results of such studies have informed governments' decisions to implement non-pharmaceutical interventions to control the spread of the virus. In this article, we explore the complex relationships between models, decision-making, the media and the public during the COVID-19 pandemic in the United Kingdom of Great Britain and Northern Ireland (UK). Doing so not only provides an important historical context of COVID-19 modelling and how it has shaped the UK response, but as the pandemic continues and looking towards future pandemic preparedness, understanding these relationships and how they might be improved is critical. As such, we have synthesized information gathered via three methods: a survey to publicly list attendees of the Scientific Advisory Group for Emergencies, the Scientific Pandemic Influenza Group on Modelling and other comparable advisory bodies, interviews with science communication experts and former scientific advisors, and reviewing some of the key COVID-19 modelling literature from 2020. Our research highlights the desire for increased bidirectional communication between modellers, decision-makers and the public, as well as the need to convey uncertainty inherent in transmission models in a clear manner. These aspects should be considered carefully ahead of the next emergency response.

2019冠状病毒病(新冠肺炎)大流行扰乱了全球数十亿人的生活。数学建模一直是在整个疫情期间部署的一个关键工具,用于探索未缓解疫情对公共卫生的潜在影响。这些研究的结果为政府决定实施非药物干预措施以控制病毒传播提供了依据。在这篇文章中,我们探讨了在新冠肺炎大流行期间,大不列颠及北爱尔兰联合王国(英国)的模型、决策、媒体和公众之间的复杂关系。这样做不仅为新冠肺炎建模及其如何影响英国应对提供了重要的历史背景,而且随着疫情的持续并展望未来的疫情准备,了解这些关系以及如何改善这些关系至关重要。因此,我们综合了通过三种方法收集的信息:一项公开列出紧急情况科学咨询小组、建模科学大流行性流感小组和其他类似咨询机构与会者名单的调查,对科学传播专家和前科学顾问的采访,以及回顾2020年新冠肺炎建模的一些关键文献。我们的研究强调了建模者、决策者和公众之间增加双向沟通的愿望,以及以明确的方式传达传输模型固有的不确定性的必要性。在下一次应急响应之前,应仔细考虑这些方面。
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引用次数: 0
Miasmas, mental models and preventive public health: some philosophical reflections on science in the COVID-19 pandemic. 瘴气、心理模式和预防性公共卫生:对2019冠状病毒病大流行中的科学的一些哲学思考。
IF 4.4 3区 生物学 Q1 BIOLOGY Pub Date : 2021-10-12 eCollection Date: 2021-12-06 DOI: 10.1098/rsfs.2021.0017
Trisha Greenhalgh

When the history of the COVID-19 pandemic is written, it is likely to show that the mental models held by scientists sometimes facilitated their thinking, thereby leading to lives saved, and at other times constrained their thinking, thereby leading to lives lost. This paper explores some competing mental models of how infectious diseases spread and shows how these models influenced the scientific process and the kinds of facts that were generated, legitimized and used to support policy. A central theme in the paper is the relative weight given by dominant scientific voices to probabilistic arguments based on experimental measurements versus mechanistic arguments based on theory. Two examples are explored: the cholera epidemic in nineteenth century London-in which the story of John Snow and the Broad Street pump is retold-and the unfolding of the COVID-19 pandemic in 2020 and early 2021-in which the evidence-based medicine movement and its hierarchy of evidence features prominently. In each case, it is shown that prevailing mental models-which were assumed by some to transcend theory but were actually heavily theory-laden-powerfully shaped both science and policy, with fatal consequences for some.

当新冠肺炎大流行的历史被书写出来时,很可能会表明,科学家所持有的心理模型有时促进了他们的思考,从而挽救了生命,有时限制了他们的思维,从而导致了生命的丧失。本文探讨了传染病如何传播的一些相互竞争的心理模型,并展示了这些模型如何影响科学过程以及产生、合法化和用于支持政策的各种事实。论文的一个中心主题是,主流科学声音对基于实验测量的概率论点与基于理论的机械论点的相对权重。探讨了两个例子:19世纪伦敦的霍乱疫情,讲述了约翰·斯诺和布罗德街水泵的故事,以及2020年和2021年初新冠肺炎大流行的展开,其中循证医学运动及其证据层次突出。在每一种情况下,都表明,一些人认为主流的心理模型超越了理论,但实际上充斥着大量的理论,它们有力地塑造了科学和政策,给一些人带来了致命的后果。
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引用次数: 9
Personal observations on COVID-19 and the conduct and application of biomedical science. 对 COVID-19 以及生物医学科学的开展和应用的个人看法。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2021-10-12 eCollection Date: 2021-12-06 DOI: 10.1098/rsfs.2021.0053
J C Smith, David W Goodhew

We begin by describing our observations of the ways in which the conduct of research has changed during the COVID-19 pandemic and go on to comment on the quality of the scientific advice that is provided to UK citizens, and especially to schools. Researchers, like many, have suffered from the effects of the pandemic. Those hardships notwithstanding, we suggest that research into COVID-19 has benefitted from a 'seed corn' of discovery science that has provided the basis for routine diagnostic PCR and antibody tests; for structural analyses of the way in which the SARS-CoV-2 virus interacts with cells; for the development of new treatments (and the debunking of ineffective ones); for studies of the genetics of susceptibility to SARS-CoV-2; and for the development of vaccines. The speed of dissemination of research has benefitted from the widespread use of pre-prints, and researchers and funders have become more nimble in their approaches to research and more willing to change their priorities in the face of the pandemic. In our experience, the advice provided to schools on the basis of this research was, however, often published at the last minute and was frequently flawed or inconsistent. This has led to a widening of the attainment gap between children from disadvantaged backgrounds and their peers and it has exacerbated the digital divide and holiday hunger. The consequences will be felt for many years to come and will jeopardize diversity in research and other careers.

我们首先描述了我们对 COVID-19 大流行期间研究工作变化方式的观察,然后对提供给英国公民,特别是学校的科学建议的质量进行了评论。与许多人一样,研究人员也受到了大流行病的影响。尽管如此,我们认为,对 COVID-19 的研究得益于发现科学的 "种子玉米",它为常规诊断 PCR 和抗体测试、SARS-CoV-2 病毒与细胞相互作用方式的结构分析、新疗法的开发(以及无效疗法的破解)、SARS-CoV-2 易感性遗传学研究以及疫苗的开发奠定了基础。预印本的广泛使用提高了研究成果的传播速度,研究人员和资助者的研究方法也变得更加灵活,更愿意在大流行病面前改变他们的优先事项。然而,根据我们的经验,在这些研究基础上向学校提供的建议往往是在最后一刻才发表的,而且经常存在缺陷或不一致。这导致贫困儿童与同龄儿童之间的学习成绩差距不断扩大,并加剧了数字鸿沟和假期饥饿。在未来的许多年里,我们都将感受到这种后果,它将危及研究和其他职业的多样性。
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引用次数: 0
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