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Dynamic visualization of brain pulsations using amplified MRI: methodology and applications. 脑脉冲的动态可视化使用放大MRI:方法和应用。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2025-04-04 DOI: 10.1098/rsfs.2024.0049
Haribalan Kumar, Mehmet Kurt, Josh McGeown, Paul Condron, Jet Wright, Gonzalo Maso Talou, Joonsung Lee, Itamar Terem, Helen Danesh-Meyer, Eryn Kwon, Samantha Holdsworth

Brain pulsatility offers a compelling application in the study of cerebral biomechanics, particularly for mild traumatic brain injury (mTBI) and elevated intracranial pressure (ICP). In this study, we used amplified MRI to quantify brain tissue pulsations. Dynamic mode decomposition (DMD) processing was then applied to provide a spatio-temporal analysis of motion. Four distinct use cases were examined: (i) resting versus exertion-induced heart rate changes, (ii) pre- and post-lumbar puncture (LP), (iii) baseline versus post-brain injury, and (iv) a test-retest case. Results demonstrate that brain tissue motion varies significantly across conditions, with DMD revealing distinct modes and frequencies corresponding to physiological changes. Notably, mTBI showed an increase in pulsatile motion post-injury, while elevated ICP exhibited altered pulsatility patterns post-LP, indicating a potential biomarker for injury and pressure-related changes. This approach offers new insights into physiological and pathological brain pulsatility; however, the study's limited sample size, reliance on retrospective gating and assumptions regarding pulsatile motion highlight the need for larger and more diverse cohorts to confirm these findings. Despite these limitations, our results suggest our dynamical analysis approach could become a valuable tool for assessing intracranial dynamics, with applications in clinical diagnostics and research on neurovascular and neurological conditions.

脑脉动在脑生物力学研究中提供了一个引人注目的应用,特别是对于轻度创伤性脑损伤(mTBI)和颅内压升高(ICP)。在这项研究中,我们使用放大的MRI来量化脑组织脉动。然后应用动态模式分解(DMD)处理来提供运动的时空分析。研究了四种不同的用例:(i)静息与运动引起的心率变化,(ii)腰椎穿刺(LP)前后,(iii)基线与脑损伤后,以及(iv)测试-再测试案例。结果表明,脑组织运动在不同条件下变化显著,DMD显示出与生理变化相对应的不同模式和频率。值得注意的是,mTBI显示出损伤后脉搏运动的增加,而升高的ICP显示出lp后脉搏模式的改变,这表明了损伤和压力相关变化的潜在生物标志物。这种方法为生理和病理脑搏动提供了新的见解;然而,该研究的样本量有限,依赖于回顾性门控和关于脉动运动的假设,这表明需要更大、更多样化的队列来证实这些发现。尽管存在这些局限性,我们的研究结果表明,我们的动态分析方法可以成为评估颅内动力学的有价值的工具,在临床诊断和神经血管和神经疾病的研究中得到应用。
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引用次数: 0
Perfusion-mechanics coupling of the hippocampus. 海马的灌注-力学耦合。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2025-04-04 DOI: 10.1098/rsfs.2024.0051
Caitlin Maria Neher, Em Triolo, Fargol RezayAraghi, Oleksandr Khegai, Priti Balchandani, Matthew McGarry, Mehmet Kurt

The hippocampus is a highly scrutinized brain structure due to its entanglement in multiple neuropathologies and vulnerability to metabolic insults. This study aims to non-invasively assess the perfusion-mechanics relationship of the hippocampus in the healthy brain across magnetic resonance imaging sequences and magnetic field strengths. In total, 17 subjects (aged 22-35, 7 males/10 females) were scanned with magnetic resonance elastography and arterial spin labelling acquisitions at 3T and 7T in a baseline physiological state. No significant differences in perfusion or stiffness were observed across magnetic field strengths or acquisitions. The hippocampus had the highest vascularity within the deep grey matter, followed closely by the caudate nucleus and putamen. We discovered a positive perfusion-mechanics correlation in the hippocampus across both 3T and 7T groups, with a highly significant correlation overall (R = 0.71, p = 0.0019), which was not observed in the caudate nucleus, a similarly vascular region. Furthermore, we supported our hypothesis that increased perfusion in the hippocampus would lead to greater pulsatile displacement in a small cohort (n = 10). Given that the hippocampus is an exceptionally vulnerable structure, with perfusion deficits often seen in diseases related to learning and memory, our results suggest a unique mechanistic link between metabolic health and stiffness biomarkers in this key region for the first time.

海马体是一个被高度审视的大脑结构,因为它与多种神经病理有关,并且容易受到代谢损伤。本研究旨在通过磁共振成像序列和磁场强度,非侵入性地评估健康大脑海马的灌注-力学关系。在基线生理状态下,17名受试者(22-35岁,7男10女)在3T和7T时接受磁共振弹性成像和动脉自旋标记扫描。灌注或僵硬度在磁场强度或获取过程中没有显著差异。海马体在深灰质中血管密度最高,其次是尾状核和壳核。我们发现在3T组和7T组海马中存在正的灌注力学相关性,总体上具有高度显著的相关性(R = 0.71, p = 0.0019),而在尾状核(一个类似的血管区域)中没有观察到这种相关性。此外,我们在一个小队列中支持我们的假设,即海马灌注增加会导致更大的脉搏位移(n = 10)。鉴于海马体是一个非常脆弱的结构,在与学习和记忆相关的疾病中经常出现灌注缺陷,我们的研究结果首次表明,在这一关键区域,代谢健康和僵硬生物标志物之间存在独特的机制联系。
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引用次数: 0
Optimizing brain protection after cardiac arrest: advanced strategies and best practices. 心脏骤停后优化大脑保护:先进的策略和最佳实践。
IF 4 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0025
Ida Giorgia Iavarone, Katia Donadello, Giammaria Cammarota, Fausto D'Agostino, Tommaso Pellis, Erik Roman-Pognuz, Claudio Sandroni, Federico Semeraro, Mypinder Sekhon, Patricia R M Rocco, Chiara Robba

Cardiac arrest (CA) is associated with high incidence and mortality rates. Among patients who survive the acute phase, brain injury stands out as a primary cause of death or disability. Effective intensive care management, including targeted temperature management, seizure treatment and maintenance of normal physiological parameters, plays a crucial role in improving survival and neurological outcomes. Current guidelines advocate for neuroprotective strategies to mitigate secondary brain injury following CA, although certain treatments remain subjects of debate. Clinical examination and neuroimaging studies, both invasive and non-invasive neuromonitoring methods and serum biomarkers are valuable tools for predicting outcomes in comatose resuscitated patients. Neuromonitoring, in particular, provides vital insights for identifying complications, personalizing treatment approaches and forecasting prognosis in patients with brain injury post-CA. In this review, we offer an overview of advanced strategies and best practices aimed at optimizing brain protection after CA.

心脏骤停(CA)与高发病率和死亡率相关。在急性期存活的患者中,脑损伤是导致死亡或残疾的主要原因。有效的重症监护管理,包括有针对性的温度管理、癫痫治疗和维持正常的生理参数,在提高生存率和神经系统预后方面起着至关重要的作用。目前的指南提倡神经保护策略来减轻CA后的继发性脑损伤,尽管某些治疗方法仍然存在争议。临床检查和神经影像学研究,侵入性和非侵入性神经监测方法和血清生物标志物是预测昏迷复苏患者预后的有价值的工具。特别是神经监测,为ca后脑损伤患者的并发症识别、个性化治疗方法和预测预后提供了重要的见解。在这篇综述中,我们提供了旨在优化CA后脑保护的先进策略和最佳实践的概述。
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引用次数: 0
A brief history of the development of transcranial tissue Doppler ultrasound. 经颅组织多普勒超声发展简史。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0031
Jennifer K Nicholls, Andrea Lecchini-Visintini, Jonathan Ince, Edward Pallett, Jatinder S Minhas, Mitsuhiro Oura, Emma M L Chung

This article documents the early development of the first transcranial Doppler (TCD)-based ultrasound system for continuous monitoring of brain tissue pulsations (BTPs). Transcranial tissue Doppler (TCTD) uses a lightweight, wearable single-element ultrasound probe to track tissue motion perpendicular to the skin's surface, providing tissue displacement estimates along a single beam line. Feasibility tests using an adapted TCD system confirmed that brain tissue motion data can be obtained from existing TCD hardware. Brain Tissue Velocimetry (Brain TV), a TCTD data acquisition system, was then developed to provide a lightweight and portable means of continuously recording TCTD data in real-time. Brain TV measurements are synchronized to a 3-lead electrocardiogram and can be recorded alongside other physiological measurements, such as blood pressure, heart rate and end-tidal carbon dioxide. We have shown that Brain TV is able to record BTPs from sample depths ranging from 22 to 80 mm below the probe's surface and from multiple positions on the head. Studies in healthy volunteers, stroke patients and ultrasound phantom brain models demonstrate how TCTD might provide insights into the relationships between physiological measurements and brain tissue motion and show promise for rapid clinical assessment and continuous monitoring of BTPs.

本文记录了首个基于经颅多普勒(TCD)的连续监测脑组织脉动(BTPs)超声系统的早期发展。经颅组织多普勒(TCTD)使用一种重量轻、可穿戴的单元件超声探头来跟踪垂直于皮肤表面的组织运动,并沿单一波束线提供组织位移估计。采用改进的TCD系统进行可行性测试,证实可以从现有的TCD硬件获得脑组织运动数据。脑组织测速仪(Brain TV)是一种TCTD数据采集系统,它提供了一种轻便、便携的方法,可以实时连续记录TCTD数据。脑电视测量与3导联心电图同步,可以与其他生理测量一起记录,如血压、心率和潮末二氧化碳。我们已经证明,大脑电视能够从探头表面以下22到80毫米的样本深度和头部的多个位置记录btp。对健康志愿者、中风患者和超声幻脑模型的研究表明,TCTD可能为生理测量和脑组织运动之间的关系提供见解,并为快速临床评估和连续监测btp提供了希望。
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引用次数: 0
The heartbeat induces local volumetric compression in the healthy human brain: a 7 T magnetic resonance imaging study on brain tissue pulsations. 心跳在健康人脑中诱发局部体积压缩:脑组织脉动的7 T磁共振成像研究。
IF 4 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0032
Ellen van Hulst, Mario G Báez-Yáñez, Ayodeji L Adams, Geert Jan Biessels, Jacobus J M Zwanenburg

Intracerebral blood volume changes along the cardiac cycle cause volumetric strain in brain tissue, measurable with displacement encoding with stimulated echoes (DENSE) magnetic resonance imaging. Individual volumetric strain maps show compressing and expanding voxels, raising the question whether systolic compressions reflect a physiological phenomenon. In DENSE data from nine healthy volunteers, voxels were grouped into three clusters according to volumetric strain in a tissue mask excluding extracerebral blood vessels and cerebrospinal fluid using a two-stage clustering approach. To confirm the physiological source of the compressions, data from a patient with a cranial opening was analysed. Spatial patterns of compressing and expanding clusters were matched to high-resolution anatomical scans, acquired in one additional individual. All healthy subjects consistently showed a cluster with compressive volumetric strain during systole, covering 10.2% [7.3-13.1%] (mean [95% confidence interval]) of the tissue mask, besides two expansion clusters. In the patient, no compression was observed. Although the compression cluster did not consistently co-localize with intracerebral veins or perivascular spaces on the anatomical scans, the first-stage clustering results suggested that the distinction between the clusters has a (peri)vascular source. In conclusion, brain tissue shows heartbeat-induced volumetric compressions, possibly indicating compression of porous structures such as intracerebral veins or perivascular spaces.

脑内血容量沿心脏周期变化引起脑组织的体积应变,可通过刺激回波(DENSE)磁共振成像的位移编码测量。个体体积应变图显示压缩和扩展体素,提出了收缩期压缩是否反映生理现象的问题。在来自9名健康志愿者的DENSE数据中,采用两阶段聚类方法,根据组织面罩中排除脑外血管和脑脊液的体积应变,将体素分为三个聚类。为了确认压迫的生理来源,我们分析了一个颅开口患者的数据。压缩和扩展集群的空间模式与高分辨率解剖扫描相匹配,在另一个个体中获得。所有健康受试者在收缩期均出现压缩体积应变集群,除两个扩张集群外,覆盖10.2%[7.3-13.1%](平均值[95%置信区间])的组织面罩。患者未见压迫。虽然压缩簇在解剖扫描上并不一致地与脑内静脉或血管周围空间共定位,但第一阶段聚类结果表明,簇之间的区别有一个(周围)血管来源。总之,脑组织显示心跳引起的体积压缩,可能表明压缩了多孔结构,如脑内静脉或血管周围空间。
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引用次数: 0
Model-driven exploration of poro-viscoelasticity in human brain tissue: be careful with the parameters! 人脑组织孔隙粘弹性的模型驱动探索:小心参数!
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0026
Alexander Greiner, Nina Reiter, Jan Hinrichsen, Manuel P Kainz, Gerhard Sommer, Gerhard A Holzapfel, Paul Steinmann, Ester Comellas, Silvia Budday

The brain is arguably the most complex human organ and modelling its mechanical behaviour has challenged researchers for decades. There is still a lack of understanding on how this multiphase tissue responds to mechanical loading and how material parameters can be reliably calibrated. While previous viscoelastic models with two relaxation times have successfully captured the response of brain tissue, the Theory of Porous Media provides a continuum mechanical framework to explore the underlying physical mechanisms, including interactions between solid matrix and free-flowing interstitial fluid. Following our previously published experimental testing protocol, here we perform finite element simulations of cyclic compression-tension loading and compression-relaxation experiments on human brain white and gray matter specimens. The solid volumetric stress proves to be a crucial factor for the overall biphasic tissue behaviour as it strongly interferes with porous effects controlled by the permeability. An inverse parameter identification reveals that poroelasticity alone is insufficient to capture the time-dependent material behaviour, but a poro-viscoelastic formulation captures the response of brain tissue well. We provide valuable insights into the individual contributions of viscous and porous effects. However, due to the strong coupling between porous, viscous, and volumetric effects, additional experiments are required to reliably determine all material parameters.

大脑可以说是人类最复杂的器官,几十年来,对其机械行为进行建模一直是研究人员面临的挑战。对于这种多相组织如何响应机械载荷以及如何可靠地校准材料参数,仍然缺乏了解。先前的具有两个松弛时间的粘弹性模型已经成功地捕获了脑组织的反应,而多孔介质理论提供了一个连续的力学框架来探索潜在的物理机制,包括固体基质和自由流动的间隙流体之间的相互作用。根据我们之前发表的实验测试方案,我们在这里对人脑白质和灰质样本进行了循环压缩-拉伸加载和压缩-松弛实验的有限元模拟。固体体积应力被证明是影响双相组织整体行为的关键因素,因为它强烈干扰由渗透率控制的多孔效应。反参数识别表明,单靠孔隙弹性不足以捕获随时间变化的材料行为,但孔隙粘弹性公式可以很好地捕获脑组织的响应。我们对粘性和多孔效应的各自贡献提供了有价值的见解。然而,由于多孔、粘性和体积效应之间的强耦合,需要额外的实验来可靠地确定所有材料参数。
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引用次数: 0
Prospective comparative clinical trials of novel non-invasive intracranial pressure pulse wave monitoring technologies: preliminary clinical data. 新型无创颅内压脉搏波监测技术的前瞻性比较临床试验:初步临床数据。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0027
Vilma Putnynaite, Edvinas Chaleckas, Mantas Deimantavicius, Laimonas Bartusis, Yasin Hamarat, Vytautas Petkus, Andrius Karaliunas, Arminas Ragauskas

Intracranial pressure (ICP) monitoring is crucial in the management of traumatic brain injury (TBI) and other neurological conditions. Elevated ICP or too low intracranial compliance (ICC) can compromise brain perfusion. Simultaneous monitoring of ICP and ICC is needed to optimize patient-specific brain perfusion in pathological conditions. Surrogate ICC changes can be extracted by analysis of ICP pulse wave morphology. Non-invasive, fully passive sensor and ICC changes monitoring are needed. This study introduces Archimedes, a novel, fully passive, non-invasive ICP wave monitor that utilizes mechanical pulsatile movement of the eyeball to assess ICP pulse waveforms. Preliminary findings indicate a high correlation r = [0.919; 0.96] between non-invasive and invasive ICP pulse wave morphologies, demonstrating the device's potential for accurate ICP pulse waveform monitoring. Additionally, the monitor can discern ICC changes, providing valuable insights for TBI and normal tension glaucoma patients according to the shape of non-invasive measured ICP pulse wave. The k-nearest neighbours algorithm used in preliminary glaucoma studies yielded promising diagnostic performance, with an accuracy of 0.89, sensitivity of 0.82, specificity of 1.0 and area under curve 0.91. Ethical approvals for ongoing studies have been secured. Initial results indicate that Archimedes real-time ICC non-invasive monitor is safe, cost-effective alternative to conventional monitoring techniques.

颅内压(ICP)监测在创伤性脑损伤(TBI)和其他神经系统疾病的治疗中至关重要。颅内压升高或过低的颅内顺应性(ICC)可损害脑灌注。在病理状态下,需要同时监测ICP和ICC以优化患者特异性脑灌注。替代的ICC变化可以通过分析ICP脉冲波形态来提取。需要无创、全无源传感器和ICC变化监测。本研究介绍了一种新颖的、完全被动的、无创的ICP波监测仪阿基米德,它利用眼球的机械脉动运动来评估ICP脉冲波形。初步研究结果表明,高相关性r = [0.919];0.96]在非侵入性和侵入性ICP脉搏波形态之间的差异,证明了该设备在精确监测ICP脉搏波形方面的潜力。此外,该监测器还可以识别ICC的变化,根据无创测量的ICP脉冲波的形状,为TBI和正常张力型青光眼患者提供有价值的见解。初步青光眼研究中使用的k近邻算法具有良好的诊断性能,准确率为0.89,灵敏度为0.82,特异性为1.0,曲线下面积为0.91。正在进行的研究已获得伦理批准。初步结果表明,阿基米德实时ICC无创监护仪是传统监测技术的一种安全、经济的替代方案。
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引用次数: 0
The pulsing brain: part I. 脉动的大脑:第一部分。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0045
Andrea Lecchini-Visintini, Emma Chung, Samantha Holdsworth, Jatinder Minhas, Stephen Payne
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引用次数: 0
Inferring in vivo murine cerebrospinal fluid flow using artificial intelligence velocimetry with moving boundaries and uncertainty quantification. 用移动边界和不确定度量化的人工智能测速法推断体内小鼠脑脊液流量。
IF 4 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0030
Juan Diego Toscano, Chenxi Wu, Antonio Ladrón-de-Guevara, Ting Du, Maiken Nedergaard, Douglas H Kelley, George Em Karniadakis, Kimberly A S Boster

Cerebrospinal fluid (CSF) flow is crucial for clearing metabolic waste from the brain, a process whose dysregulation is linked to neurodegenerative diseases like Alzheimer's. Traditional approaches like particle tracking velocimetry (PTV) are limited by their reliance on single-plane two-dimensional measurements, which fail to capture the complex dynamics of CSF flow fully. To overcome these limitations, we employ artificial intelligence velocimetry (AIV) to reconstruct three-dimensional velocities, infer pressure and wall shear stress and quantify flow rates. Given the experimental nature of the data and inherent variability in biological systems, robust uncertainty quantification (UQ) is essential. Towards this end, we have modified the baseline AIV architecture to address aleatoric uncertainty caused by noisy experimental data, enhancing our measurement refinement capabilities. We also implement UQ for the model and epistemic uncertainties arising from the governing equations and network representation. Towards this end, we test multiple governing laws, representation models and initializations. Our approach not only advances the accuracy of CSF flow quantification but also can be adapted to other applications that use physics-informed machine learning to reconstruct fields from experimental data, providing a versatile tool for inverse problems.

脑脊液(CSF)的流动对于清除大脑中的代谢废物至关重要,这一过程的失调与阿尔茨海默氏症等神经退行性疾病有关。粒子跟踪测速(PTV)等传统方法依赖于单平面二维测量,无法充分捕捉脑脊液流动的复杂动力学,因此受到限制。为了克服这些限制,我们采用人工智能测速(AIV)来重建三维速度,推断压力和壁面剪切应力,并量化流速。考虑到数据的实验性质和生物系统中固有的可变性,稳健的不确定性量化(UQ)是必不可少的。为此,我们修改了基线AIV架构,以解决由噪声实验数据引起的任意不确定性,增强了我们的测量细化能力。我们还实现了由控制方程和网络表示引起的模型和认知不确定性的UQ。为此,我们测试了多个治理法则、表示模型和初始化。我们的方法不仅提高了脑脊液流量定量的准确性,而且还可以适用于使用物理信息机器学习从实验数据中重建场的其他应用,为反问题提供了一个通用的工具。
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引用次数: 0
Robust data-driven segmentation of pulsatile cerebral vessels using functional magnetic resonance imaging. 功能磁共振成像对脉动脑血管的鲁棒数据驱动分割。
IF 3.6 3区 生物学 Q1 BIOLOGY Pub Date : 2024-12-06 DOI: 10.1098/rsfs.2024.0024
Adam M Wright, Tianyin Xu, Jacob Ingram, John Koo, Yi Zhao, Yunjie Tong, Qiuting Wen

Functional magnetic resonance imaging (fMRI) captures rich physiological and neuronal information, offering insight into neurofluid dynamics, vascular health and waste clearance. Accurate cerebral vessel segmentation could greatly facilitate fluid dynamics research in fMRI. However, existing vessel identification methods, such as magnetic resonance angiography or deep-learning-based segmentation on structural MRI, cannot reliably locate cerebral vessels in fMRI space due to misregistration from inherent fMRI distortions. To address this challenge, we developed a data-driven, automatic segmentation of cerebral vessels directly within fMRI space. This approach identified large cerebral arteries and the superior sagittal sinus (SSS) by leveraging these vessels' distinct pulsatile signal patterns during the cardiac cycle. The method was validated in a local dataset by comparing it to ground truth cerebral artery and SSS segmentations. Using the Human Connectome Project (HCP) ageing dataset, the method's reproducibility was tested on 422 participants aged 36-90, each with four repeated fMRI scans. The method demonstrated high reproducibility, with an intraclass correlation coefficient > 0.7 in both cerebral artery and SSS segmentation volumes. This study demonstrates that large cerebral arteries and SSS can be reproducibly and automatically segmented in fMRI datasets, facilitating reliable fluid dynamics investigation in these regions.

功能磁共振成像(fMRI)捕获丰富的生理和神经元信息,提供洞察神经流体动力学,血管健康和废物清除。准确的脑血管分割可以极大地促进功能磁共振成像中流体动力学的研究。然而,现有的血管识别方法,如磁共振血管造影或基于结构MRI的深度学习分割,由于固有的功能磁共振畸变导致的配准错误,无法可靠地在功能磁共振空间中定位脑血管。为了应对这一挑战,我们开发了一种数据驱动的,直接在功能磁共振成像空间内自动分割脑血管的方法。该方法通过利用大脑大动脉和上矢状窦(SSS)血管在心脏周期中不同的脉冲信号模式来识别这些血管。通过将该方法与真实的脑动脉和SSS分割进行比较,在局部数据集中验证了该方法。利用人类连接组计划(HCP)老化数据集,对422名年龄在36-90岁之间的参与者进行了该方法的可重复性测试,每位参与者都进行了四次重复的功能磁共振成像扫描。该方法重复性高,脑动脉和SSS分割体积的类内相关系数均为>.7。该研究表明,在fMRI数据集中,大脑大动脉和SSS可以重复和自动分割,从而促进了这些区域的可靠流体动力学研究。
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引用次数: 0
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