Making scribes and prescriptions are the primary activities for a health professional to serve the patients. Although in most of the cases these tasks are pursued manually, a few studies focused on developing digital scribe generation and prescription systems. Moreover, to enhance the effectiveness and adoption of such digital scribe and prescription systems, these systems should be intelligent and useable enough. Therefore, the objective of this research is to understand the user requirements for developing an automated scribes and intelligent prescribing system for health professionals and to develop the automated scribes and intelligent prescribing system based on the revealed users' requirements. And finally, to evaluate the performance of the proposed system. To attain these objectives, a requirement elicitation study was carried out following the semi-structured interviews to reveal the user requirements for an intelligent scribe and prescription system. The study proposed an automated digital scribe that can record medical information adopting the LSTM model; and also be able to generate automated prescriptions based on a doctor's voice command. Finally, the system was evaluated through an empirical study where participants (doctors) were asked to generate scribes and provide prescriptions manually and also by using the proposed system. The study found that the scribes and prescriptions generated using the proposed system are highly similar to the scribes (87.5 %) and prescriptions (96.2 %) generated manually. Analysis of the evaluation results also showed that the system provides a user-friendly, easy-to-use, intuitive, and interactive interface to facilitate the doctors and clinicians.
{"title":"Enhancing patient treatment through automation: The development of an efficient scribe and prescribe system","authors":"Muhammad Nazrul Islam, Sazia Tabasum Mim, Tanha Tasfia, Md Mushfique Hossain","doi":"10.1016/j.imu.2024.101456","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101456","url":null,"abstract":"<div><p>Making scribes and prescriptions are the primary activities for a health professional to serve the patients. Although in most of the cases these tasks are pursued manually, a few studies focused on developing digital scribe generation and prescription systems. Moreover, to enhance the effectiveness and adoption of such digital scribe and prescription systems, these systems should be intelligent and useable enough. Therefore, the objective of this research is to understand the user requirements for developing an automated scribes and intelligent prescribing system for health professionals and to develop the automated scribes and intelligent prescribing system based on the revealed users' requirements. And finally, to evaluate the performance of the proposed system. To attain these objectives, a requirement elicitation study was carried out following the semi-structured interviews to reveal the user requirements for an intelligent scribe and prescription system. The study proposed an automated digital scribe that can record medical information adopting the LSTM model; and also be able to generate automated prescriptions based on a doctor's voice command. Finally, the system was evaluated through an empirical study where participants (doctors) were asked to generate scribes and provide prescriptions manually and also by using the proposed system. The study found that the scribes and prescriptions generated using the proposed system are highly similar to the scribes (87.5 %) and prescriptions (96.2 %) generated manually. Analysis of the evaluation results also showed that the system provides a user-friendly, easy-to-use, intuitive, and interactive interface to facilitate the doctors and clinicians.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"45 ","pages":"Article 101456"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000121/pdfft?md5=7d641da8561428b2107c12dd1510ed49&pid=1-s2.0-S2352914824000121-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139709079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101484
Suhaib Muflih , Sayer I. Al-Azzam , Karem H. Alzoubi , Reema Karasneh , Sahar Hawamdeh , Waleed M. Sweileh
Background
As the use of technology has increased, a set of problematic psychological behaviors associated with internet use has evolved. This bibliometric research aims to discover and analyze internet addiction (IA) articles trends from 1996 to 2022.
Methods
This research is based on a bibliometric examination of internet addiction papers published between 1996 and 2022. The Scopus database was utilized to extract the needed documents, examine citation patterns and publication growth, and identify prolific authors and institutions.
Results
There were 9692 publications on internet addiction from 1996 to 2022, with an average of 359 documents each year. A total of 21906 authors contributed to the literature, with the majority of publications (86.9%) being multi-authored. The United States (US) ranked first in terms of volume of publications (18.8%, n = 1819), followed by China (12.3%, n = 1194), the United Kingdom (8.3%, n = 808), and Turkey (6.2%, n = 602). However, the majority of the productive institutions were located in East Asia.
Conclusion
There is a substantial body of literature on internet addiction, with numerous worldwide collaborations. As IA will be a lingering problem with the increased digitization of all sectors, future research should focus on emerging topics such as social media and gaming addiction. Internet addiction among adolescents in particular is a key research area.
{"title":"A bibliometric analysis of global trends in internet addiction publications from 1996 to 2022","authors":"Suhaib Muflih , Sayer I. Al-Azzam , Karem H. Alzoubi , Reema Karasneh , Sahar Hawamdeh , Waleed M. Sweileh","doi":"10.1016/j.imu.2024.101484","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101484","url":null,"abstract":"<div><h3>Background</h3><p>As the use of technology has increased, a set of problematic psychological behaviors associated with internet use has evolved. This bibliometric research aims to discover and analyze internet addiction (IA) articles trends from 1996 to 2022.</p></div><div><h3>Methods</h3><p>This research is based on a bibliometric examination of internet addiction papers published between 1996 and 2022. The Scopus database was utilized to extract the needed documents, examine citation patterns and publication growth, and identify prolific authors and institutions.</p></div><div><h3>Results</h3><p>There were 9692 publications on internet addiction from 1996 to 2022, with an average of 359 documents each year. A total of 21906 authors contributed to the literature, with the majority of publications (86.9%) being multi-authored. The United States (US) ranked first in terms of volume of publications (18.8%, n = 1819), followed by China (12.3%, n = 1194), the United Kingdom (8.3%, n = 808), and Turkey (6.2%, n = 602). However, the majority of the productive institutions were located in East Asia.</p></div><div><h3>Conclusion</h3><p>There is a substantial body of literature on internet addiction, with numerous worldwide collaborations. As IA will be a lingering problem with the increased digitization of all sectors, future research should focus on emerging topics such as social media and gaming addiction. Internet addiction among adolescents in particular is a key research area.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101484"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000406/pdfft?md5=e7d08583cd79b1c49478d7a7fb1298f5&pid=1-s2.0-S2352914824000406-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140328559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101492
Dhiah Al-Shammary , Ekram Hakem , Ahmed M. Mahdi , Ayman Ibaida , Khandakar Ahmed
This paper introduces a novel clustering approach based on Minkowski's mathematical similarity to improve EEG feature selection for classification and have efficient Particle Swarm Optimization (PSO) in the context of machine learning. Given the intricacy of high-dimensional medical datasets, feature selection plays a critical role in preventing disease and promoting public health. By employing Minkowski clustering, the objective is to group dataset records into two clusters exhibiting high feature coherence, thereby improving accuracy by applying optimization techniques like PSO to select the most optimal features. Furthermore, the proposed model can be extended to intelligent datasets, including EEG and others. As fewer features are needed for precise categorization, intelligent feature selection is an advanced step of machine learning. This paper investigates the key factors influencing feature selection in the EEG Bonn University dataset. The proposed system is compared against various optimization and feature selection methods, demonstrating superior performance in analyzing and classifying EEG signals based on accuracy measures. The experimental results have confirmed the effectiveness of the suggested model as a valuable tool for EEG data classification, achieving up to 100% accuracy. The outcomes of this research have the potential to benefit medical experts in related specialties by streamlining the process of identifying and diagnosing brain disorders. Technically, the machine learning algorithms RF, KNN, SVM, NB, and DT are employed to classify the selected features.
{"title":"A novel brain EEG clustering based on Minkowski distance to improve intelligent epilepsy diagnosis","authors":"Dhiah Al-Shammary , Ekram Hakem , Ahmed M. Mahdi , Ayman Ibaida , Khandakar Ahmed","doi":"10.1016/j.imu.2024.101492","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101492","url":null,"abstract":"<div><p>This paper introduces a novel clustering approach based on Minkowski's mathematical similarity to improve EEG feature selection for classification and have efficient Particle Swarm Optimization (PSO) in the context of machine learning. Given the intricacy of high-dimensional medical datasets, feature selection plays a critical role in preventing disease and promoting public health. By employing Minkowski clustering, the objective is to group dataset records into two clusters exhibiting high feature coherence, thereby improving accuracy by applying optimization techniques like PSO to select the most optimal features. Furthermore, the proposed model can be extended to intelligent datasets, including EEG and others. As fewer features are needed for precise categorization, intelligent feature selection is an advanced step of machine learning. This paper investigates the key factors influencing feature selection in the EEG Bonn University dataset. The proposed system is compared against various optimization and feature selection methods, demonstrating superior performance in analyzing and classifying EEG signals based on accuracy measures. The experimental results have confirmed the effectiveness of the suggested model as a valuable tool for EEG data classification, achieving up to 100% accuracy. The outcomes of this research have the potential to benefit medical experts in related specialties by streamlining the process of identifying and diagnosing brain disorders. Technically, the machine learning algorithms RF, KNN, SVM, NB, and DT are employed to classify the selected features.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101492"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000480/pdfft?md5=807f932a500c248b634203967b394485&pid=1-s2.0-S2352914824000480-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140344681","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Speech impairments, resulting from brain injuries, mental disorders, or vocal abuse, substantially affect an individual’s quality of life and can lead to social isolation. Brain–Computer Interfaces (BCIs), particularly those based on EEG, offer a promising support mechanism by harnessing brain signals. Owing to their clinical efficacy, cost-effective EEG devices, and expanding applications in the medical and social spheres, their usage has surged. This study introduces an ensemble-based feature engineering mechanism to pinpoint the optimal brain rhythm, channel subset, and feature set for accurately predicting imagined words from EEG signals via machine learning models. Leveraging the 2020 International BCI competition dataset, we employed bandpass filtering, channel wrapping, and ranking methods were applied to discern suitable brain rhythms and features associated with imagined speech. Subsequent application of kernel-based principal component analysis enabled us to compress the feature space dimensionality. We then trained various machine learning models, among which the kNN model excelled, achieving an average accuracy of 73% in a 10-fold cross-validation scheme ,surpassing 18% higher than the existing literature. The Gamma rhythm was identified as the most predictive of imagined speech from EEG brain signals. These advancements herald a new era of more precise and effective BCIs, poised to significantly improve the lives of those with speech impairments.
{"title":"Ensemble-based feature engineering mechanism to decode imagined speech from brain signals","authors":"Uzair Shah, Mahmood Alzubaidi, Farida Mohsen, Tanvir Alam, Mowafa Househ","doi":"10.1016/j.imu.2024.101491","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101491","url":null,"abstract":"<div><p>Speech impairments, resulting from brain injuries, mental disorders, or vocal abuse, substantially affect an individual’s quality of life and can lead to social isolation. Brain–Computer Interfaces (BCIs), particularly those based on EEG, offer a promising support mechanism by harnessing brain signals. Owing to their clinical efficacy, cost-effective EEG devices, and expanding applications in the medical and social spheres, their usage has surged. This study introduces an ensemble-based feature engineering mechanism to pinpoint the optimal brain rhythm, channel subset, and feature set for accurately predicting imagined words from EEG signals via machine learning models. Leveraging the 2020 International BCI competition dataset, we employed bandpass filtering, channel wrapping, and ranking methods were applied to discern suitable brain rhythms and features associated with imagined speech. Subsequent application of kernel-based principal component analysis enabled us to compress the feature space dimensionality. We then trained various machine learning models, among which the kNN model excelled, achieving an average accuracy of 73% in a 10-fold cross-validation scheme ,surpassing 18% higher than the existing literature. The Gamma rhythm was identified as the most predictive of imagined speech from EEG brain signals. These advancements herald a new era of more precise and effective BCIs, poised to significantly improve the lives of those with speech impairments.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101491"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000479/pdfft?md5=b7426fcd2dc0c80cde42c9585f90d202&pid=1-s2.0-S2352914824000479-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140533647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101523
Aditi Chopra , Rohini R. Rao , Shobha U. Kamath , Sanjana Akhila Arun , Laasya Shettigar
Introduction
There is a need for designing non-invasive methods to predict blood glucose levels to ensure timely diagnosis of Diabetes Mellitus. Needle anxiety and bleeding disorders preclude many from undertaking blood tests.
Objectives
The primary objective of this study was to assess if biomarkers like saliva can be used to estimate blood glucose levels. The second objective was to develop and evaluate Machine Learning (ML) models to predict blood glucose levels based on salivary glucose and associated features. An insight into the patient's features, which was important for predicting blood glucose levels, was also required.
Methods
A cross-sectional study was conducted, and blood and saliva samples, along with patient-related data, were collected from healthy and diabetic patients. ML techniques were applied to the data to develop a tool for predicting blood glucose levels using patient features. The prediction intervals were computed, clinical accuracy was assessed, and important features for the prediction were identified.
Results
The Random Forest Regressor Model, with features identified using the wrapper method, was selected as the best, with an average RMSE of 43.28. The prediction intervals were computed for point estimate, MAE = 23.821, and coverage was 100 percent, the clinical accuracy was compared with that of glucometers and continuous monitoring systems. All predicted values are in Zones A and B of the Clarke error grid, and the bias was 6.41. The most important feature for predicting blood glucose level is salivary glucose level, followed by known risk factors like Family History, BMI, etc. The study found that salivary glucose levels are insufficient to classify blood glucose levels as high or normal.
Conclusion
The study concluded that salivary glucose with associated patient features could be a potential non-invasive biomarker for predicting blood glucose levels in patients. The developed ML model could be deployed in a device that inputs patient features, analyzes salivary glucose, and can monitor blood glucose levels in a non-invasive manner. Further research is needed to validate the findings of this study and develop a proof of concept.
导言:有必要设计非侵入性方法来预测血糖水平,以确保及时诊断糖尿病。本研究的主要目的是评估唾液等生物标志物是否可用于估测血糖水平。第二个目标是开发和评估基于唾液葡萄糖和相关特征预测血糖水平的机器学习(ML)模型。还需要深入了解患者的特征,这对预测血糖水平非常重要。方法进行了一项横断面研究,收集了健康和糖尿病患者的血液和唾液样本以及患者相关数据。对数据应用了 ML 技术,以开发一种利用患者特征预测血糖水平的工具。计算了预测区间,评估了临床准确性,并确定了预测的重要特征。结果使用包装方法确定特征的随机森林回归模型被选为最佳模型,平均 RMSE 为 43.28。计算了点估计的预测区间,MAE = 23.821,覆盖率为 100%,临床准确度与血糖仪和连续监测系统的准确度进行了比较。所有预测值均位于克拉克误差网格的 A 区和 B 区,偏差为 6.41。预测血糖水平最重要的特征是唾液葡萄糖水平,其次是已知的风险因素,如家族史、体重指数等。研究发现,唾液葡萄糖水平不足以将血糖水平划分为高或正常。所开发的 ML 模型可用于输入患者特征、分析唾液葡萄糖的设备中,并能以非侵入性方式监测血糖水平。还需要进一步的研究来验证本研究的结果和开发概念验证。
{"title":"Predicting blood glucose level using salivary glucose and other associated factors: A machine learning model selection and evaluation study","authors":"Aditi Chopra , Rohini R. Rao , Shobha U. Kamath , Sanjana Akhila Arun , Laasya Shettigar","doi":"10.1016/j.imu.2024.101523","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101523","url":null,"abstract":"<div><h3>Introduction</h3><p>There is a need for designing non-invasive methods to predict blood glucose levels to ensure timely diagnosis of Diabetes Mellitus. Needle anxiety and bleeding disorders preclude many from undertaking blood tests.</p></div><div><h3>Objectives</h3><p>The primary objective of this study was to assess if biomarkers like saliva can be used to estimate blood glucose levels. The second objective was to develop and evaluate Machine Learning (ML) models to predict blood glucose levels based on salivary glucose and associated features. An insight into the patient's features, which was important for predicting blood glucose levels, was also required.</p></div><div><h3>Methods</h3><p>A cross-sectional study was conducted, and blood and saliva samples, along with patient-related data, were collected from healthy and diabetic patients. ML techniques were applied to the data to develop a tool for predicting blood glucose levels using patient features. The prediction intervals were computed, clinical accuracy was assessed, and important features for the prediction were identified.</p></div><div><h3>Results</h3><p>The Random Forest Regressor Model, with features identified using the wrapper method, was selected as the best, with an average RMSE of 43.28. The prediction intervals were computed for point estimate, MAE = 23.821, and coverage was 100 percent, the clinical accuracy was compared with that of glucometers and continuous monitoring systems. All predicted values are in Zones A and B of the Clarke error grid, and the bias was 6.41. The most important feature for predicting blood glucose level is salivary glucose level, followed by known risk factors like Family History, BMI, etc. The study found that salivary glucose levels are insufficient to classify blood glucose levels as high or normal.</p></div><div><h3>Conclusion</h3><p>The study concluded that salivary glucose with associated patient features could be a potential non-invasive biomarker for predicting blood glucose levels in patients. The developed ML model could be deployed in a device that inputs patient features, analyzes salivary glucose, and can monitor blood glucose levels in a non-invasive manner. Further research is needed to validate the findings of this study and develop a proof of concept.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"48 ","pages":"Article 101523"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000790/pdfft?md5=4a9c0bd5b5ca8b62fe997281e3cad676&pid=1-s2.0-S2352914824000790-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141077743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101447
João Rafael Almeida , José Luís Oliveira
Background:
Data catalogues are used in multiple domains to provide an overview of databases’ characteristics without releasing the actual data. Despite the existence of several web-based catalogues, they do not always meet the needs of certain domains. In the healthcare field, they need to give multiple and iterative views to the data, from high-level metadata up to low-level samples or patient data. This approach is critical to help researchers find relevant datasets for their studies.
Methods:
In this paper, we present MONTRA2, a web platform for profiling distributed databases. The users’ requirements were designed in the context of the EHDEN European project, in close collaboration with medical researchers, data owners, and pharmaceutical companies, leading to a rich set of functionalities to support databases and cohorts discovery. The platform was developed with a modular architecture which simplifies the integration of internal and external services.
Results:
MONTRA2 is successfully being used in several European projects and research initiatives, focused on the dissemination and sharing of biomedical databases. In this paper, we present three health data catalogues that were built upon the core of this framework. MONTRA2 is publicly available under the MIT license at https://github.com/bioinformatics-ua/montra2.
Conclusions:
The execution of federated studies on a large scale and involving multiple centres is only possible if adequate tools for data management and discovery are available. By providing tools for study management, database characterisation and publishing, among others, MONTRA2 simplifies the process of setting up a workspace for a community to expose the characteristics of datasets and provide multiple strategies for data analysis.
背景:数据目录用于多个领域,在不公开实际数据的情况下提供数据库特征概览。尽管存在一些基于网络的目录,但它们并不总能满足某些领域的需求。在医疗保健领域,它们需要提供从高级元数据到低级样本或患者数据的多重迭代数据视图。方法:在本文中,我们介绍了用于剖析分布式数据库的网络平台 MONTRA2。用户的需求是在欧洲 EHDEN 项目的背景下,与医学研究人员、数据所有者和制药公司密切合作设计的,从而产生了支持数据库和队列发现的丰富功能。成果:MONTRA2已成功应用于多个欧洲项目和研究计划,重点关注生物医学数据库的传播和共享。本文介绍了以该框架为核心构建的三个健康数据目录。MONTRA2 在 MIT 许可下公开发布,网址为 https://github.com/bioinformatics-ua/montra2.Conclusions:The 只有提供适当的数据管理和发现工具,才有可能开展大规模、涉及多个中心的联合研究。通过提供研究管理、数据库特征描述和发布等工具,MONTRA2简化了为社区建立工作空间的过程,从而揭示了数据集的特征,并为数据分析提供了多种策略。
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Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101504
Md. Eshmam Rayed , S.M. Sajibul Islam , Sadia Islam Niha , Jamin Rahman Jim , Md Mohsin Kabir , M.F. Mridha
Image segmentation, a crucial process of dividing images into distinct parts or objects, has witnessed remarkable advancements with the emergence of deep learning (DL) techniques. The use of layers in deep neural networks, like object form recognition in higher layers and basic edge identification in lower layers, has markedly improved the quality and accuracy of image segmentation. Consequently, DL using picture segmentation has become commonplace, video analysis, facial recognition, etc. Grasping the applications, algorithms, current performance, and challenges are crucial for advancing DL-based medical image segmentation. However, there is a lack of studies delving into the latest state-of-the-art developments in this field. Therefore, this survey aimed to thoroughly explore the most recent applications of DL-based medical image segmentation, encompassing an in-depth analysis of various commonly used datasets, pre-processing techniques and DL algorithms. This study also investigated the state-of-the-art advancement done in DL-based medical image segmentation by analyzing their results and experimental details. Finally, this study discussed the challenges and future research directions of DL-based medical image segmentation. Overall, this survey provides a comprehensive insight into DL-based medical image segmentation by covering its application domains, model exploration, analysis of state-of-the-art results, challenges, and research directions—a valuable resource for multidisciplinary studies.
{"title":"Deep learning for medical image segmentation: State-of-the-art advancements and challenges","authors":"Md. Eshmam Rayed , S.M. Sajibul Islam , Sadia Islam Niha , Jamin Rahman Jim , Md Mohsin Kabir , M.F. Mridha","doi":"10.1016/j.imu.2024.101504","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101504","url":null,"abstract":"<div><p>Image segmentation, a crucial process of dividing images into distinct parts or objects, has witnessed remarkable advancements with the emergence of deep learning (DL) techniques. The use of layers in deep neural networks, like object form recognition in higher layers and basic edge identification in lower layers, has markedly improved the quality and accuracy of image segmentation. Consequently, DL using picture segmentation has become commonplace, video analysis, facial recognition, etc. Grasping the applications, algorithms, current performance, and challenges are crucial for advancing DL-based medical image segmentation. However, there is a lack of studies delving into the latest state-of-the-art developments in this field. Therefore, this survey aimed to thoroughly explore the most recent applications of DL-based medical image segmentation, encompassing an in-depth analysis of various commonly used datasets, pre-processing techniques and DL algorithms. This study also investigated the state-of-the-art advancement done in DL-based medical image segmentation by analyzing their results and experimental details. Finally, this study discussed the challenges and future research directions of DL-based medical image segmentation. Overall, this survey provides a comprehensive insight into DL-based medical image segmentation by covering its application domains, model exploration, analysis of state-of-the-art results, challenges, and research directions—a valuable resource for multidisciplinary studies.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101504"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000601/pdfft?md5=fe81e44fe1f75c7162c9d0f2a8875844&pid=1-s2.0-S2352914824000601-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140647066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101501
Stephen Edward
A deterministic mathematical model for Hepatitis A infection is established and subsequently examined to optimize control strategies. The model incorporates three time-dependent controls: vaccination, health education, and hygiene compliance, focusing on mitigating disease transmission in the community. The derivation of the basic reproduction number was conducted using the Next-Generation Matrix (NGM) technique, which was subsequently utilized to analyze the stability of the equilibria of the model. The optimal control problem is established and analyzed using Pontryagin’s Maximum principle. The numerical simulation of the optimal control problem is achieved via Runge–Kutta fourth-order schemes (forward and backward sweeps). The numerical findings demonstrate a significant reduction in Hepatitis A cases by implementing at least one control measure. Besides that, it has been established that coupling vaccination, health education and hygiene compliance results in the lowest number of cases, making it an optimal option for eradicating Hepatitis A in the community. However, applying this strategy could be more costlier. As such, the cost-effective analysis was carried out via an incremental cost-effectiveness ratio approach to ascertain the most cost-effective strategy. The findings confirmed that the vaccination strategy was the most cost-effective approach among the strategies under consideration because it offers the minimum number of cases at the minimum cost. This approach is particularly applicable in situations with constrained resources, a circumstance prevalent in many developing nations.
{"title":"On the role of vaccination, health education, and hygiene compliance in the elimination and control of Hepatitis A Virus: An optimal control approach","authors":"Stephen Edward","doi":"10.1016/j.imu.2024.101501","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101501","url":null,"abstract":"<div><p>A deterministic mathematical model for Hepatitis A infection is established and subsequently examined to optimize control strategies. The model incorporates three time-dependent controls: vaccination, health education, and hygiene compliance, focusing on mitigating disease transmission in the community. The derivation of the basic reproduction number was conducted using the Next-Generation Matrix (NGM) technique, which was subsequently utilized to analyze the stability of the equilibria of the model. The optimal control problem is established and analyzed using Pontryagin’s Maximum principle. The numerical simulation of the optimal control problem is achieved via Runge–Kutta fourth-order schemes (forward and backward sweeps). The numerical findings demonstrate a significant reduction in Hepatitis A cases by implementing at least one control measure. Besides that, it has been established that coupling vaccination, health education and hygiene compliance results in the lowest number of cases, making it an optimal option for eradicating Hepatitis A in the community. However, applying this strategy could be more costlier. As such, the cost-effective analysis was carried out via an incremental cost-effectiveness ratio approach to ascertain the most cost-effective strategy. The findings confirmed that the vaccination strategy was the most cost-effective approach among the strategies under consideration because it offers the minimum number of cases at the minimum cost. This approach is particularly applicable in situations with constrained resources, a circumstance prevalent in many developing nations.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101501"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000571/pdfft?md5=c0856ec03e896e00a88b477eb75ef868&pid=1-s2.0-S2352914824000571-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140620760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101507
Kunal Tembhare, Tina Sharma, Sunitha M. Kasibhatla, Archana Achalere, Rajendra Joshi
Integration of voluminous omics data aids to unravel biological complexities associated with different disease phenotypes. Machine learning (ML) approaches provide insightful techniques for systematic multi-omics data integration. In this study, survival prediction of breast cancer patients was undertaken using omics data of 302 female patients from The Cancer Genome Atlas (TCGA). The data included gene expression, miRNA expression, DNA methylation and copy number variation. Three computational multi-ensemble ML pipelines were tested using Support Vector Machine (SVM), Random Forest (RF) and Partial Least Squares-Discriminant Analysis (PLS-DA) algorithms. To overcome the limitations associated with univariate feature selection criteria, the ML pipelines were built along with latent factors obtained by multivariate dimension reduction method. This facilitated investigation of background genetic networks and identification of potential hub genes. Analysis of the results obtained revealed that SVM with PLS-DA method (integrated with gene expression, DNA methylation, and miRNA expression modalities) was the best-performing model with an Area Under Curve (AUC) of 89% and an accuracy of 83% for survival prediction. This study not only corroborated previously reported breast cancer-specific prognostic biomarkers but also predicted additional potential biomarkers. The work demonstrates the effective use of a multi-ensemble ML model with efficient feature selection methods as a robust protocol for cancer genotype to phenotype correlation.
整合大量的组学数据有助于揭示与不同疾病表型相关的生物复杂性。机器学习(ML)方法为系统的多组学数据整合提供了具有洞察力的技术。在这项研究中,我们利用癌症基因组图谱(TCGA)中 302 名女性患者的组学数据对乳腺癌患者的生存率进行了预测。这些数据包括基因表达、miRNA表达、DNA甲基化和拷贝数变异。使用支持向量机(SVM)、随机森林(RF)和偏最小二乘法判别分析(PLS-DA)算法测试了三种计算多集合 ML 管道。为了克服与单变量特征选择标准相关的局限性,在建立 ML 管道的同时,还采用了多变量降维方法获得的潜在因子。这有助于研究背景遗传网络和识别潜在的中心基因。对所得结果的分析表明,采用 PLS-DA 方法(与基因表达、DNA 甲基化和 miRNA 表达模式相结合)的 SVM 是表现最好的模型,其曲线下面积(AUC)为 89%,生存预测准确率为 83%。这项研究不仅证实了之前报道的乳腺癌特异性预后生物标志物,还预测了其他潜在的生物标志物。这项工作证明了多集合 ML 模型与高效特征选择方法的有效结合,可作为癌症基因型与表型相关性的稳健方案。
{"title":"Multi-ensemble machine learning framework for omics data integration: A case study using breast cancer samples","authors":"Kunal Tembhare, Tina Sharma, Sunitha M. Kasibhatla, Archana Achalere, Rajendra Joshi","doi":"10.1016/j.imu.2024.101507","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101507","url":null,"abstract":"<div><p>Integration of voluminous omics data aids to unravel biological complexities associated with different disease phenotypes. Machine learning (ML) approaches provide insightful techniques for systematic multi-omics data integration. In this study, survival prediction of breast cancer patients was undertaken using omics data of 302 female patients from The Cancer Genome Atlas (TCGA). The data included gene expression, miRNA expression, DNA methylation and copy number variation. Three computational multi-ensemble ML pipelines were tested using Support Vector Machine (SVM), Random Forest (RF) and Partial Least Squares-Discriminant Analysis (PLS-DA) algorithms. To overcome the limitations associated with univariate feature selection criteria, the ML pipelines were built along with latent factors obtained by multivariate dimension reduction method. This facilitated investigation of background genetic networks and identification of potential hub genes. Analysis of the results obtained revealed that SVM with PLS-DA method (integrated with gene expression, DNA methylation, and miRNA expression modalities) was the best-performing model with an Area Under Curve (AUC) of 89% and an accuracy of 83% for survival prediction. This study not only corroborated previously reported breast cancer-specific prognostic biomarkers but also predicted additional potential biomarkers. The work demonstrates the effective use of a multi-ensemble ML model with efficient feature selection methods as a robust protocol for cancer genotype to phenotype correlation.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101507"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000637/pdfft?md5=d0bc5069357cca8ad1607f59098d6c54&pid=1-s2.0-S2352914824000637-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140638122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The quality of medical documentation is crucial for enhancing patient care, as accurate records reduce medical errors and improve patient safety. Given the pivotal role of medical records in delivering high-quality healthcare services, effective training in documentation skills is essential. Whence, this study aimed to design and evaluate a web-based training program focused on medical record documentation, specifically for medical students in Iran (West Azerbaijan province, Urmia), but can be easily adapted to other pertinent cases.
Method
This semi-experimental study was conducted in 2023 and comprised three main phases: pre-intervention, intervention, and post-intervention. In the first phase, an online questionnaire assessing knowledge, attitudes, and performance was developed and integrated into the web-based education program. During the second phase, multimedia electronic content was created and made accessible to students for two months. In the final phase, the same online questionnaire was administered to the students again. The study involved 114 medical students from Urmia University of Medical Sciences. Among the 114 medical students (61 externs and 53 interns), 53.4 % were male, and 46.6 % were female. The data were analyzed using SPSS 16 software.
Results
Following the intervention, students’ knowledge scores are seen increase from 76.50 to 86.30, attitudes improved from 79.33 to 85, and performance enhanced from 74.92 to 81.40. Further statistical analysis reveals that the web-based training significantly impacted the knowledge, attitudes, and performance of the medical students regarding documentation, with a p-value less than 0.05.
Conclusion
The findings of this specific study indicate that web-based education, supplemented with multimedia content, has led to significant improvements in the knowledge, attitudes, and performance of medical students in medical record documentation. While these positive outcomes suggest that the course characteristics played an important role, further investigation is no doubt needed to establish a direct causal relationship. Ongoing studies are surely recommendable. Nonetheless, implementing such educational approaches appears to be an essential ingredient for enhancing the documentation skills of future healthcare professionals. The study may open educational perspectives and inspire further ad hoc research in nearby domains making use of complex documentation.
{"title":"Designing and evaluating a web-based training program for medical record documentation: Insights from a developing country experience","authors":"Navisa Abbasi , Mohamad Jebraeily , Shahsanam Gheibi , Yousef Mohammadpoor","doi":"10.1016/j.imu.2024.101599","DOIUrl":"10.1016/j.imu.2024.101599","url":null,"abstract":"<div><h3>Background</h3><div>The quality of medical documentation is crucial for enhancing patient care, as accurate records reduce medical errors and improve patient safety. Given the pivotal role of medical records in delivering high-quality healthcare services, effective training in documentation skills is essential. Whence, this study aimed to design and evaluate a web-based training program focused on medical record documentation, specifically for medical students in Iran (West Azerbaijan province, Urmia), but can be easily adapted to other pertinent cases.</div></div><div><h3>Method</h3><div>This semi-experimental study was conducted in 2023 and comprised three main phases: pre-intervention, intervention, and post-intervention. In the first phase, an online questionnaire assessing knowledge, attitudes, and performance was developed and integrated into the web-based education program. During the second phase, multimedia electronic content was created and made accessible to students for two months. In the final phase, the same online questionnaire was administered to the students again. The study involved 114 medical students from Urmia University of Medical Sciences. Among the 114 medical students (61 externs and 53 interns), 53.4 % were male, and 46.6 % were female. The data were analyzed using SPSS 16 software.</div></div><div><h3>Results</h3><div>Following the intervention, students’ knowledge scores are seen increase from 76.50 to 86.30, attitudes improved from 79.33 to 85, and performance enhanced from 74.92 to 81.40. Further statistical analysis reveals that the web-based training significantly impacted the knowledge, attitudes, and performance of the medical students regarding documentation, with a p-value less than 0.05.</div></div><div><h3>Conclusion</h3><div>The findings of this specific study indicate that web-based education, supplemented with multimedia content, has led to significant improvements in the knowledge, attitudes, and performance of medical students in medical record documentation. While these positive outcomes suggest that the course characteristics played an important role, further investigation is no doubt needed to establish a direct causal relationship. Ongoing studies are surely recommendable. Nonetheless, implementing such educational approaches appears to be an essential ingredient for enhancing the documentation skills of future healthcare professionals. The study may open educational perspectives and inspire further ad hoc research in nearby domains making use of complex documentation.</div></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"51 ","pages":"Article 101599"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142700567","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}