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Enhancing patient treatment through automation: The development of an efficient scribe and prescribe system 通过自动化提高病人治疗水平:开发高效的抄写和开处方系统
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101456
Muhammad Nazrul Islam, Sazia Tabasum Mim, Tanha Tasfia, Md Mushfique Hossain

Making scribes and prescriptions are the primary activities for a health professional to serve the patients. Although in most of the cases these tasks are pursued manually, a few studies focused on developing digital scribe generation and prescription systems. Moreover, to enhance the effectiveness and adoption of such digital scribe and prescription systems, these systems should be intelligent and useable enough. Therefore, the objective of this research is to understand the user requirements for developing an automated scribes and intelligent prescribing system for health professionals and to develop the automated scribes and intelligent prescribing system based on the revealed users' requirements. And finally, to evaluate the performance of the proposed system. To attain these objectives, a requirement elicitation study was carried out following the semi-structured interviews to reveal the user requirements for an intelligent scribe and prescription system. The study proposed an automated digital scribe that can record medical information adopting the LSTM model; and also be able to generate automated prescriptions based on a doctor's voice command. Finally, the system was evaluated through an empirical study where participants (doctors) were asked to generate scribes and provide prescriptions manually and also by using the proposed system. The study found that the scribes and prescriptions generated using the proposed system are highly similar to the scribes (87.5 %) and prescriptions (96.2 %) generated manually. Analysis of the evaluation results also showed that the system provides a user-friendly, easy-to-use, intuitive, and interactive interface to facilitate the doctors and clinicians.

抄写和开处方是医疗专业人员为病人服务的主要活动。虽然在大多数情况下,这些工作都是人工完成的,但也有少数研究侧重于开发数字抄写生成和处方系统。此外,为了提高这些数字抄写和处方系统的有效性和采用率,这些系统应该足够智能和易用。因此,本研究的目的是了解用户对开发卫生专业人员自动抄写和智能处方系统的需求,并根据所揭示的用户需求开发自动抄写和智能处方系统。最后,对拟议系统的性能进行评估。为了实现这些目标,我们通过半结构式访谈开展了一项需求征询研究,以揭示用户对智能抄写员和处方系统的需求。该研究提出了一种自动数字抄写器,它可以采用 LSTM 模型记录医疗信息,还能根据医生的语音命令生成自动处方。最后,通过实证研究对该系统进行了评估,要求参与者(医生)手动生成抄写员并提供处方,同时也使用所提议的系统。研究发现,使用拟议系统生成的抄写本和处方与人工生成的抄写本(87.5%)和处方(96.2%)高度相似。对评估结果的分析还表明,该系统提供了一个用户友好、易于使用、直观和互动的界面,为医生和临床医师提供了便利。
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引用次数: 0
A bibliometric analysis of global trends in internet addiction publications from 1996 to 2022 对 1996 年至 2022 年全球网瘾出版物趋势的文献计量分析
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101484
Suhaib Muflih , Sayer I. Al-Azzam , Karem H. Alzoubi , Reema Karasneh , Sahar Hawamdeh , Waleed M. Sweileh

Background

As the use of technology has increased, a set of problematic psychological behaviors associated with internet use has evolved. This bibliometric research aims to discover and analyze internet addiction (IA) articles trends from 1996 to 2022.

Methods

This research is based on a bibliometric examination of internet addiction papers published between 1996 and 2022. The Scopus database was utilized to extract the needed documents, examine citation patterns and publication growth, and identify prolific authors and institutions.

Results

There were 9692 publications on internet addiction from 1996 to 2022, with an average of 359 documents each year. A total of 21906 authors contributed to the literature, with the majority of publications (86.9%) being multi-authored. The United States (US) ranked first in terms of volume of publications (18.8%, n = 1819), followed by China (12.3%, n = 1194), the United Kingdom (8.3%, n = 808), and Turkey (6.2%, n = 602). However, the majority of the productive institutions were located in East Asia.

Conclusion

There is a substantial body of literature on internet addiction, with numerous worldwide collaborations. As IA will be a lingering problem with the increased digitization of all sectors, future research should focus on emerging topics such as social media and gaming addiction. Internet addiction among adolescents in particular is a key research area.

背景随着技术使用的增加,一系列与互联网使用相关的问题心理行为也随之发展。这项文献计量学研究旨在发现和分析 1996 年至 2022 年间网络成瘾(IA)文章的发展趋势。研究利用 Scopus 数据库提取所需的文献,研究引文模式和出版物增长情况,并确定多产作者和机构。共有 21906 位作者发表了相关文献,其中大部分(86.9%)为多人合著。就论文数量而言,美国排名第一(18.8%,n = 1819),其次是中国(12.3%,n = 1194)、英国(8.3%,n = 808)和土耳其(6.2%,n = 602)。结论目前已有大量关于网络成瘾的文献,并有许多全球性的合作。随着各行各业数字化程度的提高,网络成瘾将成为一个挥之不去的问题,因此未来的研究应侧重于社交媒体和游戏成瘾等新兴课题。青少年网瘾尤其是一个关键的研究领域。
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引用次数: 0
A novel brain EEG clustering based on Minkowski distance to improve intelligent epilepsy diagnosis 基于闵科夫斯基距离的新型脑电图聚类提高癫痫智能诊断水平
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101492
Dhiah Al-Shammary , Ekram Hakem , Ahmed M. Mahdi , Ayman Ibaida , Khandakar Ahmed

This paper introduces a novel clustering approach based on Minkowski's mathematical similarity to improve EEG feature selection for classification and have efficient Particle Swarm Optimization (PSO) in the context of machine learning. Given the intricacy of high-dimensional medical datasets, feature selection plays a critical role in preventing disease and promoting public health. By employing Minkowski clustering, the objective is to group dataset records into two clusters exhibiting high feature coherence, thereby improving accuracy by applying optimization techniques like PSO to select the most optimal features. Furthermore, the proposed model can be extended to intelligent datasets, including EEG and others. As fewer features are needed for precise categorization, intelligent feature selection is an advanced step of machine learning. This paper investigates the key factors influencing feature selection in the EEG Bonn University dataset. The proposed system is compared against various optimization and feature selection methods, demonstrating superior performance in analyzing and classifying EEG signals based on accuracy measures. The experimental results have confirmed the effectiveness of the suggested model as a valuable tool for EEG data classification, achieving up to 100% accuracy. The outcomes of this research have the potential to benefit medical experts in related specialties by streamlining the process of identifying and diagnosing brain disorders. Technically, the machine learning algorithms RF, KNN, SVM, NB, and DT are employed to classify the selected features.

本文介绍了一种基于闵科夫斯基数学相似性的新型聚类方法,以改进用于分类的脑电图特征选择,并在机器学习中实现高效的粒子群优化(PSO)。鉴于高维医学数据集的复杂性,特征选择在预防疾病和促进公众健康方面发挥着至关重要的作用。通过采用闵科夫斯基聚类,目标是将数据集记录归入两个具有高特征一致性的聚类,从而通过应用 PSO 等优化技术选择最优特征来提高准确性。此外,建议的模型还可扩展到智能数据集,包括脑电图和其他数据集。由于精确分类所需的特征较少,因此智能特征选择是机器学习的高级步骤。本文研究了影响脑电图波恩大学数据集特征选择的关键因素。将所提出的系统与各种优化和特征选择方法进行了比较,结果表明,根据准确度指标,该系统在分析和分类脑电信号方面表现出色。实验结果证实了所建议的模型作为脑电图数据分类的重要工具的有效性,准确率高达 100%。这项研究的成果有望使相关专业的医学专家受益,简化识别和诊断脑部疾病的过程。在技术上,采用了 RF、KNN、SVM、NB 和 DT 等机器学习算法对所选特征进行分类。
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引用次数: 0
Ensemble-based feature engineering mechanism to decode imagined speech from brain signals 基于集合的特征工程机制,解码大脑信号中的想象语音
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101491
Uzair Shah, Mahmood Alzubaidi, Farida Mohsen, Tanvir Alam, Mowafa Househ

Speech impairments, resulting from brain injuries, mental disorders, or vocal abuse, substantially affect an individual’s quality of life and can lead to social isolation. Brain–Computer Interfaces (BCIs), particularly those based on EEG, offer a promising support mechanism by harnessing brain signals. Owing to their clinical efficacy, cost-effective EEG devices, and expanding applications in the medical and social spheres, their usage has surged. This study introduces an ensemble-based feature engineering mechanism to pinpoint the optimal brain rhythm, channel subset, and feature set for accurately predicting imagined words from EEG signals via machine learning models. Leveraging the 2020 International BCI competition dataset, we employed bandpass filtering, channel wrapping, and ranking methods were applied to discern suitable brain rhythms and features associated with imagined speech. Subsequent application of kernel-based principal component analysis enabled us to compress the feature space dimensionality. We then trained various machine learning models, among which the kNN model excelled, achieving an average accuracy of 73% in a 10-fold cross-validation scheme ,surpassing 18% higher than the existing literature. The Gamma rhythm was identified as the most predictive of imagined speech from EEG brain signals. These advancements herald a new era of more precise and effective BCIs, poised to significantly improve the lives of those with speech impairments.

因脑损伤、精神障碍或滥用发声而造成的语言障碍会严重影响个人的生活质量,并可能导致社交孤立。脑机接口(BCI),尤其是基于脑电图的脑机接口,通过利用大脑信号提供了一种前景广阔的支持机制。由于其临床疗效、脑电图设备的成本效益以及在医疗和社会领域的应用不断扩大,其使用量激增。本研究介绍了一种基于集合的特征工程机制,通过机器学习模型确定最佳脑节奏、信道子集和特征集,从而准确预测脑电信号中的想象词。利用2020年国际BCI竞赛数据集,我们采用了带通滤波、通道包装和排序方法来识别与想象中的语音相关的合适大脑节奏和特征。随后应用基于核的主成分分析,使我们能够压缩特征空间的维度。然后,我们训练了各种机器学习模型,其中 kNN 模型表现出色,在 10 倍交叉验证方案中取得了 73% 的平均准确率,比现有文献高出 18%。伽马节律被认为是脑电图信号中最能预测想象语音的节律。这些进展预示着一个更精确、更有效的生物识别(BCI)新时代的到来,有望显著改善语言障碍患者的生活。
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引用次数: 0
Predicting blood glucose level using salivary glucose and other associated factors: A machine learning model selection and evaluation study 利用唾液葡萄糖和其他相关因素预测血糖水平:机器学习模型选择与评估研究
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101523
Aditi Chopra , Rohini R. Rao , Shobha U. Kamath , Sanjana Akhila Arun , Laasya Shettigar

Introduction

There is a need for designing non-invasive methods to predict blood glucose levels to ensure timely diagnosis of Diabetes Mellitus. Needle anxiety and bleeding disorders preclude many from undertaking blood tests.

Objectives

The primary objective of this study was to assess if biomarkers like saliva can be used to estimate blood glucose levels. The second objective was to develop and evaluate Machine Learning (ML) models to predict blood glucose levels based on salivary glucose and associated features. An insight into the patient's features, which was important for predicting blood glucose levels, was also required.

Methods

A cross-sectional study was conducted, and blood and saliva samples, along with patient-related data, were collected from healthy and diabetic patients. ML techniques were applied to the data to develop a tool for predicting blood glucose levels using patient features. The prediction intervals were computed, clinical accuracy was assessed, and important features for the prediction were identified.

Results

The Random Forest Regressor Model, with features identified using the wrapper method, was selected as the best, with an average RMSE of 43.28. The prediction intervals were computed for point estimate, MAE = 23.821, and coverage was 100 percent, the clinical accuracy was compared with that of glucometers and continuous monitoring systems. All predicted values are in Zones A and B of the Clarke error grid, and the bias was 6.41. The most important feature for predicting blood glucose level is salivary glucose level, followed by known risk factors like Family History, BMI, etc. The study found that salivary glucose levels are insufficient to classify blood glucose levels as high or normal.

Conclusion

The study concluded that salivary glucose with associated patient features could be a potential non-invasive biomarker for predicting blood glucose levels in patients. The developed ML model could be deployed in a device that inputs patient features, analyzes salivary glucose, and can monitor blood glucose levels in a non-invasive manner. Further research is needed to validate the findings of this study and develop a proof of concept.

导言:有必要设计非侵入性方法来预测血糖水平,以确保及时诊断糖尿病。本研究的主要目的是评估唾液等生物标志物是否可用于估测血糖水平。第二个目标是开发和评估基于唾液葡萄糖和相关特征预测血糖水平的机器学习(ML)模型。还需要深入了解患者的特征,这对预测血糖水平非常重要。方法进行了一项横断面研究,收集了健康和糖尿病患者的血液和唾液样本以及患者相关数据。对数据应用了 ML 技术,以开发一种利用患者特征预测血糖水平的工具。计算了预测区间,评估了临床准确性,并确定了预测的重要特征。结果使用包装方法确定特征的随机森林回归模型被选为最佳模型,平均 RMSE 为 43.28。计算了点估计的预测区间,MAE = 23.821,覆盖率为 100%,临床准确度与血糖仪和连续监测系统的准确度进行了比较。所有预测值均位于克拉克误差网格的 A 区和 B 区,偏差为 6.41。预测血糖水平最重要的特征是唾液葡萄糖水平,其次是已知的风险因素,如家族史、体重指数等。研究发现,唾液葡萄糖水平不足以将血糖水平划分为高或正常。所开发的 ML 模型可用于输入患者特征、分析唾液葡萄糖的设备中,并能以非侵入性方式监测血糖水平。还需要进一步的研究来验证本研究的结果和开发概念验证。
{"title":"Predicting blood glucose level using salivary glucose and other associated factors: A machine learning model selection and evaluation study","authors":"Aditi Chopra ,&nbsp;Rohini R. Rao ,&nbsp;Shobha U. Kamath ,&nbsp;Sanjana Akhila Arun ,&nbsp;Laasya Shettigar","doi":"10.1016/j.imu.2024.101523","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101523","url":null,"abstract":"<div><h3>Introduction</h3><p>There is a need for designing non-invasive methods to predict blood glucose levels to ensure timely diagnosis of Diabetes Mellitus. Needle anxiety and bleeding disorders preclude many from undertaking blood tests.</p></div><div><h3>Objectives</h3><p>The primary objective of this study was to assess if biomarkers like saliva can be used to estimate blood glucose levels. The second objective was to develop and evaluate Machine Learning (ML) models to predict blood glucose levels based on salivary glucose and associated features. An insight into the patient's features, which was important for predicting blood glucose levels, was also required.</p></div><div><h3>Methods</h3><p>A cross-sectional study was conducted, and blood and saliva samples, along with patient-related data, were collected from healthy and diabetic patients. ML techniques were applied to the data to develop a tool for predicting blood glucose levels using patient features. The prediction intervals were computed, clinical accuracy was assessed, and important features for the prediction were identified.</p></div><div><h3>Results</h3><p>The Random Forest Regressor Model, with features identified using the wrapper method, was selected as the best, with an average RMSE of 43.28. The prediction intervals were computed for point estimate, MAE = 23.821, and coverage was 100 percent, the clinical accuracy was compared with that of glucometers and continuous monitoring systems. All predicted values are in Zones A and B of the Clarke error grid, and the bias was 6.41. The most important feature for predicting blood glucose level is salivary glucose level, followed by known risk factors like Family History, BMI, etc. The study found that salivary glucose levels are insufficient to classify blood glucose levels as high or normal.</p></div><div><h3>Conclusion</h3><p>The study concluded that salivary glucose with associated patient features could be a potential non-invasive biomarker for predicting blood glucose levels in patients. The developed ML model could be deployed in a device that inputs patient features, analyzes salivary glucose, and can monitor blood glucose levels in a non-invasive manner. Further research is needed to validate the findings of this study and develop a proof of concept.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"48 ","pages":"Article 101523"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000790/pdfft?md5=4a9c0bd5b5ca8b62fe997281e3cad676&pid=1-s2.0-S2352914824000790-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141077743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MONTRA2: A web platform for profiling distributed databases in the health domain MONTRA2:卫生领域分布式数据库剖析网络平台
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101447
João Rafael Almeida , José Luís Oliveira

Background:

Data catalogues are used in multiple domains to provide an overview of databases’ characteristics without releasing the actual data. Despite the existence of several web-based catalogues, they do not always meet the needs of certain domains. In the healthcare field, they need to give multiple and iterative views to the data, from high-level metadata up to low-level samples or patient data. This approach is critical to help researchers find relevant datasets for their studies.

Methods:

In this paper, we present MONTRA2, a web platform for profiling distributed databases. The users’ requirements were designed in the context of the EHDEN European project, in close collaboration with medical researchers, data owners, and pharmaceutical companies, leading to a rich set of functionalities to support databases and cohorts discovery. The platform was developed with a modular architecture which simplifies the integration of internal and external services.

Results:

MONTRA2 is successfully being used in several European projects and research initiatives, focused on the dissemination and sharing of biomedical databases. In this paper, we present three health data catalogues that were built upon the core of this framework. MONTRA2 is publicly available under the MIT license at https://github.com/bioinformatics-ua/montra2.

Conclusions:

The execution of federated studies on a large scale and involving multiple centres is only possible if adequate tools for data management and discovery are available. By providing tools for study management, database characterisation and publishing, among others, MONTRA2 simplifies the process of setting up a workspace for a community to expose the characteristics of datasets and provide multiple strategies for data analysis.

背景:数据目录用于多个领域,在不公开实际数据的情况下提供数据库特征概览。尽管存在一些基于网络的目录,但它们并不总能满足某些领域的需求。在医疗保健领域,它们需要提供从高级元数据到低级样本或患者数据的多重迭代数据视图。方法:在本文中,我们介绍了用于剖析分布式数据库的网络平台 MONTRA2。用户的需求是在欧洲 EHDEN 项目的背景下,与医学研究人员、数据所有者和制药公司密切合作设计的,从而产生了支持数据库和队列发现的丰富功能。成果:MONTRA2已成功应用于多个欧洲项目和研究计划,重点关注生物医学数据库的传播和共享。本文介绍了以该框架为核心构建的三个健康数据目录。MONTRA2 在 MIT 许可下公开发布,网址为 https://github.com/bioinformatics-ua/montra2.Conclusions:The 只有提供适当的数据管理和发现工具,才有可能开展大规模、涉及多个中心的联合研究。通过提供研究管理、数据库特征描述和发布等工具,MONTRA2简化了为社区建立工作空间的过程,从而揭示了数据集的特征,并为数据分析提供了多种策略。
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引用次数: 0
Deep learning for medical image segmentation: State-of-the-art advancements and challenges 医学图像分割的深度学习:最新进展与挑战
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101504
Md. Eshmam Rayed , S.M. Sajibul Islam , Sadia Islam Niha , Jamin Rahman Jim , Md Mohsin Kabir , M.F. Mridha

Image segmentation, a crucial process of dividing images into distinct parts or objects, has witnessed remarkable advancements with the emergence of deep learning (DL) techniques. The use of layers in deep neural networks, like object form recognition in higher layers and basic edge identification in lower layers, has markedly improved the quality and accuracy of image segmentation. Consequently, DL using picture segmentation has become commonplace, video analysis, facial recognition, etc. Grasping the applications, algorithms, current performance, and challenges are crucial for advancing DL-based medical image segmentation. However, there is a lack of studies delving into the latest state-of-the-art developments in this field. Therefore, this survey aimed to thoroughly explore the most recent applications of DL-based medical image segmentation, encompassing an in-depth analysis of various commonly used datasets, pre-processing techniques and DL algorithms. This study also investigated the state-of-the-art advancement done in DL-based medical image segmentation by analyzing their results and experimental details. Finally, this study discussed the challenges and future research directions of DL-based medical image segmentation. Overall, this survey provides a comprehensive insight into DL-based medical image segmentation by covering its application domains, model exploration, analysis of state-of-the-art results, challenges, and research directions—a valuable resource for multidisciplinary studies.

图像分割是将图像划分为不同部分或对象的重要过程,随着深度学习(DL)技术的出现,图像分割技术取得了显著进步。深度神经网络中各层的使用,如高层的物体形态识别和低层的基本边缘识别,显著提高了图像分割的质量和准确性。因此,使用图片分割的 DL 技术在视频分析、人脸识别等方面已变得非常普遍。掌握应用、算法、当前性能和挑战对于推进基于 DL 的医学图像分割至关重要。然而,目前缺乏对该领域最新进展的深入研究。因此,本调查旨在深入探讨基于 DL 的医学图像分割的最新应用,包括对各种常用数据集、预处理技术和 DL 算法的深入分析。本研究还通过分析其结果和实验细节,研究了基于 DL 的医学图像分割的最新进展。最后,本研究讨论了基于 DL 的医学图像分割所面临的挑战和未来的研究方向。总之,本研究通过对基于 DL 的医学图像分割的应用领域、模型探索、最新成果分析、挑战和研究方向的研究,为多学科研究提供了一个全面的视角。
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引用次数: 0
On the role of vaccination, health education, and hygiene compliance in the elimination and control of Hepatitis A Virus: An optimal control approach 疫苗接种、健康教育和遵守卫生规定在消除和控制甲型肝炎病毒中的作用:最优控制方法
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101501
Stephen Edward

A deterministic mathematical model for Hepatitis A infection is established and subsequently examined to optimize control strategies. The model incorporates three time-dependent controls: vaccination, health education, and hygiene compliance, focusing on mitigating disease transmission in the community. The derivation of the basic reproduction number was conducted using the Next-Generation Matrix (NGM) technique, which was subsequently utilized to analyze the stability of the equilibria of the model. The optimal control problem is established and analyzed using Pontryagin’s Maximum principle. The numerical simulation of the optimal control problem is achieved via Runge–Kutta fourth-order schemes (forward and backward sweeps). The numerical findings demonstrate a significant reduction in Hepatitis A cases by implementing at least one control measure. Besides that, it has been established that coupling vaccination, health education and hygiene compliance results in the lowest number of cases, making it an optimal option for eradicating Hepatitis A in the community. However, applying this strategy could be more costlier. As such, the cost-effective analysis was carried out via an incremental cost-effectiveness ratio approach to ascertain the most cost-effective strategy. The findings confirmed that the vaccination strategy was the most cost-effective approach among the strategies under consideration because it offers the minimum number of cases at the minimum cost. This approach is particularly applicable in situations with constrained resources, a circumstance prevalent in many developing nations.

建立了一个甲型肝炎感染的确定性数学模型,随后对其进行了研究,以优化控制策略。该模型包含三种随时间变化的控制措施:疫苗接种、健康教育和遵守卫生规定,重点是减轻疾病在社区的传播。利用下一代矩阵(NGM)技术推导了基本繁殖数,随后利用该技术分析了模型平衡点的稳定性。利用庞特里亚金最大原则建立并分析了最优控制问题。最优控制问题的数值模拟是通过 Runge-Kutta 四阶方案(前向和后向扫描)实现的。数值结果表明,通过实施至少一项控制措施,甲型肝炎病例明显减少。除此以外,接种疫苗、健康教育和遵守卫生习惯三者结合的结果是病例数最少,因此是在社区根除甲型肝炎的最佳选择。然而,采用这一策略可能会增加成本。因此,我们通过增量成本效益比方法进行了成本效益分析,以确定最具成本效益的策略。研究结果证实,在所考虑的各种策略中,疫苗接种策略最具成本效益,因为它能以最低的成本提供最少的病例数。这种方法尤其适用于资源有限的情况,而这种情况在许多发展中国家十分普遍。
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引用次数: 0
Multi-ensemble machine learning framework for omics data integration: A case study using breast cancer samples 用于 omics 数据整合的多集合机器学习框架:使用乳腺癌样本的案例研究
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101507
Kunal Tembhare, Tina Sharma, Sunitha M. Kasibhatla, Archana Achalere, Rajendra Joshi

Integration of voluminous omics data aids to unravel biological complexities associated with different disease phenotypes. Machine learning (ML) approaches provide insightful techniques for systematic multi-omics data integration. In this study, survival prediction of breast cancer patients was undertaken using omics data of 302 female patients from The Cancer Genome Atlas (TCGA). The data included gene expression, miRNA expression, DNA methylation and copy number variation. Three computational multi-ensemble ML pipelines were tested using Support Vector Machine (SVM), Random Forest (RF) and Partial Least Squares-Discriminant Analysis (PLS-DA) algorithms. To overcome the limitations associated with univariate feature selection criteria, the ML pipelines were built along with latent factors obtained by multivariate dimension reduction method. This facilitated investigation of background genetic networks and identification of potential hub genes. Analysis of the results obtained revealed that SVM with PLS-DA method (integrated with gene expression, DNA methylation, and miRNA expression modalities) was the best-performing model with an Area Under Curve (AUC) of 89% and an accuracy of 83% for survival prediction. This study not only corroborated previously reported breast cancer-specific prognostic biomarkers but also predicted additional potential biomarkers. The work demonstrates the effective use of a multi-ensemble ML model with efficient feature selection methods as a robust protocol for cancer genotype to phenotype correlation.

整合大量的组学数据有助于揭示与不同疾病表型相关的生物复杂性。机器学习(ML)方法为系统的多组学数据整合提供了具有洞察力的技术。在这项研究中,我们利用癌症基因组图谱(TCGA)中 302 名女性患者的组学数据对乳腺癌患者的生存率进行了预测。这些数据包括基因表达、miRNA表达、DNA甲基化和拷贝数变异。使用支持向量机(SVM)、随机森林(RF)和偏最小二乘法判别分析(PLS-DA)算法测试了三种计算多集合 ML 管道。为了克服与单变量特征选择标准相关的局限性,在建立 ML 管道的同时,还采用了多变量降维方法获得的潜在因子。这有助于研究背景遗传网络和识别潜在的中心基因。对所得结果的分析表明,采用 PLS-DA 方法(与基因表达、DNA 甲基化和 miRNA 表达模式相结合)的 SVM 是表现最好的模型,其曲线下面积(AUC)为 89%,生存预测准确率为 83%。这项研究不仅证实了之前报道的乳腺癌特异性预后生物标志物,还预测了其他潜在的生物标志物。这项工作证明了多集合 ML 模型与高效特征选择方法的有效结合,可作为癌症基因型与表型相关性的稳健方案。
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引用次数: 0
Designing and evaluating a web-based training program for medical record documentation: Insights from a developing country experience 设计和评估基于网络的病历记录培训计划:发展中国家的经验启示
Q1 Medicine Pub Date : 2024-01-01 DOI: 10.1016/j.imu.2024.101599
Navisa Abbasi , Mohamad Jebraeily , Shahsanam Gheibi , Yousef Mohammadpoor

Background

The quality of medical documentation is crucial for enhancing patient care, as accurate records reduce medical errors and improve patient safety. Given the pivotal role of medical records in delivering high-quality healthcare services, effective training in documentation skills is essential. Whence, this study aimed to design and evaluate a web-based training program focused on medical record documentation, specifically for medical students in Iran (West Azerbaijan province, Urmia), but can be easily adapted to other pertinent cases.

Method

This semi-experimental study was conducted in 2023 and comprised three main phases: pre-intervention, intervention, and post-intervention. In the first phase, an online questionnaire assessing knowledge, attitudes, and performance was developed and integrated into the web-based education program. During the second phase, multimedia electronic content was created and made accessible to students for two months. In the final phase, the same online questionnaire was administered to the students again. The study involved 114 medical students from Urmia University of Medical Sciences. Among the 114 medical students (61 externs and 53 interns), 53.4 % were male, and 46.6 % were female. The data were analyzed using SPSS 16 software.

Results

Following the intervention, students’ knowledge scores are seen increase from 76.50 to 86.30, attitudes improved from 79.33 to 85, and performance enhanced from 74.92 to 81.40. Further statistical analysis reveals that the web-based training significantly impacted the knowledge, attitudes, and performance of the medical students regarding documentation, with a p-value less than 0.05.

Conclusion

The findings of this specific study indicate that web-based education, supplemented with multimedia content, has led to significant improvements in the knowledge, attitudes, and performance of medical students in medical record documentation. While these positive outcomes suggest that the course characteristics played an important role, further investigation is no doubt needed to establish a direct causal relationship. Ongoing studies are surely recommendable. Nonetheless, implementing such educational approaches appears to be an essential ingredient for enhancing the documentation skills of future healthcare professionals. The study may open educational perspectives and inspire further ad hoc research in nearby domains making use of complex documentation.
背景医疗记录的质量对加强病人护理至关重要,因为准确的记录可以减少医疗差错,提高病人安全。鉴于医疗记录在提供高质量医疗服务中的关键作用,有效的记录技能培训至关重要。因此,本研究旨在设计和评估一项基于网络的培训计划,该计划主要针对伊朗(西阿塞拜疆省,乌尔米耶)的医科学生,但也很容易适用于其他相关情况。在第一阶段,开发了评估知识、态度和表现的在线问卷,并将其整合到网络教育计划中。在第二阶段,制作了多媒体电子内容,并向学生开放,为期两个月。在最后阶段,再次向学生发放相同的在线问卷。这项研究涉及乌尔米耶医科大学的 114 名医学生。在 114 名医科学生(61 名校外实习生和 53 名实习生)中,53.4% 为男生,46.6% 为女生。结果干预后,学生的知识得分从 76.50 分提高到 86.30 分,态度从 79.33 分改善到 85 分,成绩从 74.92 分提高到 81.40 分。进一步的统计分析显示,基于网络的培训对医学生在病历记录方面的知识、态度和表现产生了显著影响,P 值小于 0.05。虽然这些积极的结果表明课程的特点发挥了重要作用,但要建立直接的因果关系,无疑还需要进一步的调查。持续的研究肯定是值得推荐的。不过,实施这种教育方法似乎是提高未来医护人员记录技能的一个重要因素。这项研究可能会打开教育视野,并激励在附近使用复杂文档的领域开展进一步的特别研究。
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期刊
Informatics in Medicine Unlocked
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