Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101483
Md. Naim Islam , Md. Shafiul Azam , Md. Samiul Islam , Muntasir Hasan Kanchan , A.H.M. Shahariar Parvez , Md. Monirul Islam
Recent developments in artificial intelligence and medical imaging technologies have significantly improved disease analysis and prediction, especially regarding identifying brain tumors (BTs). With the advancement of medical imaging technology, 3D brain scans can now be captured using a variety of modalities, offering a comprehensive perspective for tumor diagnosis. A key stage in the diagnosis tactic is extracting pertinent features from magnetic resonance imaging (MRI) scans, and several researchers have suggested various methods. This work aims to develop an accurate BTs detection and classification system using machine and deep learning techniques. The system is designed to classify BTs and healthy data using three merged datasets. Deep learning algorithms, including 2D convolutional neural network (CNN) with 13 layers, CNN long short-term memory (LSTM), and another 2D CNN with nine layers, are employed to improve the classification performance of the system. All three deep learning models achieve high accuracy, with 2D CNN LSTM yielding the highest accuracy of 98.47%, followed by another 2D CNN at 97.71% and 2D CNN at 92.36%. These models are then combined using ensemble learning to make a hybrid network, which further improves the system’s accuracy. The comparative analysis demonstrates that the ensemble deep learning models outperform all other classifiers, achieving an accuracy of 98.82%, precision of 99%, and recall of 99%. The work findings indicate that the developed brain tumor detection and classification system, which combines deep learning techniques, offers high accuracy and precision, making it a promising tool for accurately diagnosing brain tumors.
{"title":"An improved deep learning-based hybrid model with ensemble techniques for brain tumor detection from MRI image","authors":"Md. Naim Islam , Md. Shafiul Azam , Md. Samiul Islam , Muntasir Hasan Kanchan , A.H.M. Shahariar Parvez , Md. Monirul Islam","doi":"10.1016/j.imu.2024.101483","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101483","url":null,"abstract":"<div><p>Recent developments in artificial intelligence and medical imaging technologies have significantly improved disease analysis and prediction, especially regarding identifying brain tumors (BTs). With the advancement of medical imaging technology, 3D brain scans can now be captured using a variety of modalities, offering a comprehensive perspective for tumor diagnosis. A key stage in the diagnosis tactic is extracting pertinent features from magnetic resonance imaging (MRI) scans, and several researchers have suggested various methods. This work aims to develop an accurate BTs detection and classification system using machine and deep learning techniques. The system is designed to classify BTs and healthy data using three merged datasets. Deep learning algorithms, including 2D convolutional neural network (CNN) with 13 layers, CNN long short-term memory (LSTM), and another 2D CNN with nine layers, are employed to improve the classification performance of the system. All three deep learning models achieve high accuracy, with 2D CNN LSTM yielding the highest accuracy of 98.47%, followed by another 2D CNN at 97.71% and 2D CNN at 92.36%. These models are then combined using ensemble learning to make a hybrid network, which further improves the system’s accuracy. The comparative analysis demonstrates that the ensemble deep learning models outperform all other classifiers, achieving an accuracy of 98.82%, precision of 99%, and recall of 99%. The work findings indicate that the developed brain tumor detection and classification system, which combines deep learning techniques, offers high accuracy and precision, making it a promising tool for accurately diagnosing brain tumors.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101483"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S235291482400039X/pdfft?md5=490c656f17d8c511416bb85f3392a69a&pid=1-s2.0-S235291482400039X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140351391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101528
Chi-Young Park , JeEon Joo , Ok-Heui You , ShinGi Yi , Chul-Yun Kim , A-Ram Jo
This study aimed to develop a predictive model using lifestyle behavioral factors related to chronic skin disease symptoms and machine learning techniques. A cross-sectional survey was conducted among patients with chronic skin diseases currently receiving treatment at 19 Saengki Korean Medical Clinics specializing in the treatment of chronic skin diseases. Data were collected from 264 participants through an online survey conducted over a three-month period. We used changes in patients' skin symptoms as the dependent variable and lifestyle, behavioral, and treatment variables that affect chronic skin disease remission as predictors. Based on previous studies, we evaluated the performance of the six models using machine learning techniques (decision tree, logistic regression [LR], random forest [RF], CatBoost, gradient boosting classifier, and LightGBM) that are commonly used to create predictive models using categorical factors. The results showed that RF and LR performed well. We selected LR as the final model based on the confusion matrix and receiver operating characteristic (ROC) curve. The LR results showed that herbal medicine use and hospital visits were associated with chronic skin disease symptoms, whereas the RF results showed that herbal medicine use, exercise, and wheat flour consumption were associated with chronic skin disease symptoms. These findings suggest that both the treatment and lifestyle behaviors are associated with chronic skin disease symptoms.
本研究旨在利用与慢性皮肤病症状相关的生活方式行为因素和机器学习技术开发一个预测模型。该研究对目前在19家专门治疗慢性皮肤病的Saengki韩医诊所接受治疗的慢性皮肤病患者进行了横断面调查。我们通过为期三个月的在线调查收集了 264 名参与者的数据。我们将患者皮肤症状的变化作为因变量,将影响慢性皮肤病缓解的生活方式、行为和治疗变量作为预测因子。根据以往的研究,我们使用机器学习技术(决策树、逻辑回归 [LR]、随机森林 [RF]、CatBoost、梯度提升分类器和 LightGBM)评估了六个模型的性能,这些技术通常用于使用分类因素创建预测模型。结果表明,RF 和 LR 表现良好。根据混淆矩阵和接收者操作特征曲线(ROC),我们选择 LR 作为最终模型。LR结果显示,中药使用和医院就诊与慢性皮肤病症状相关,而RF结果显示,中药使用、运动和小麦粉消费与慢性皮肤病症状相关。这些结果表明,治疗行为和生活方式行为都与慢性皮肤病症状有关。
{"title":"Development of a predictive model for managing lifestyle behaviors among patients with chronic skin diseases: Using machine learning techniques","authors":"Chi-Young Park , JeEon Joo , Ok-Heui You , ShinGi Yi , Chul-Yun Kim , A-Ram Jo","doi":"10.1016/j.imu.2024.101528","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101528","url":null,"abstract":"<div><p>This study aimed to develop a predictive model using lifestyle behavioral factors related to chronic skin disease symptoms and machine learning techniques. A cross-sectional survey was conducted among patients with chronic skin diseases currently receiving treatment at 19 Saengki Korean Medical Clinics specializing in the treatment of chronic skin diseases. Data were collected from 264 participants through an online survey conducted over a three-month period. We used changes in patients' skin symptoms as the dependent variable and lifestyle, behavioral, and treatment variables that affect chronic skin disease remission as predictors. Based on previous studies, we evaluated the performance of the six models using machine learning techniques (decision tree, logistic regression [LR], random forest [RF], CatBoost, gradient boosting classifier, and LightGBM) that are commonly used to create predictive models using categorical factors. The results showed that RF and LR performed well. We selected LR as the final model based on the confusion matrix and receiver operating characteristic (ROC) curve. The LR results showed that herbal medicine use and hospital visits were associated with chronic skin disease symptoms, whereas the RF results showed that herbal medicine use, exercise, and wheat flour consumption were associated with chronic skin disease symptoms. These findings suggest that both the treatment and lifestyle behaviors are associated with chronic skin disease symptoms.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"48 ","pages":"Article 101528"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000844/pdfft?md5=5bd483f442b202c1c117fb149909583d&pid=1-s2.0-S2352914824000844-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141302536","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101581
Hasan Gharaibeh , Noor Aldeen Alawad , Ahmad Nasayreh , Rabia Emhamed Al Mamlook , Sharif Naser Makhadmeh , Ayah Bashkami , Qais Al-Na'amneh , Laith Abualigah , Absalom E. Ezugwu
Bladder cancer (BC) remains a significant global health challenge, requiring the development of accurate predictive models for diagnosis. In this study, a new Binary Modified White Whale Optimization (B-MBWO) algorithm is proposed to address the BC problem. The proposed method utilizes circular transitivity optimization and the Probabilistic State Mutation Algorithm (PSMA) to enhance its optimization performance. The new method is called the BBWORCPS algorithm. High-dimensional and complex medical datasets pose challenges to the original optimization algorithms in addressing the BC problem, motivating the proposed modifications to the original Beluga Whale Optimization algorithm. These enhancements, including quantum-inspired mutation and circular crossing, aim to improve solution space exploration and enhance the algorithm's effectiveness in handling intricate feature spaces. Through comprehensive experiments on BC datasets, the superiority of the BBWORCPS algorithm in terms of feature selection accuracy and computational efficiency is demonstrated compared to existing optimization methods. The obtained findings suggest that BBWORCPS offers a promising approach for developing more precise and reliable predictive models for bladder cancer analysis.
膀胱癌(BC)仍然是全球健康面临的重大挑战,需要开发准确的预测模型进行诊断。本研究提出了一种新的二元修正白鲸优化算法(B-MBWO)来解决膀胱癌问题。该方法利用循环反演优化和概率状态突变算法(PSMA)来提高优化性能。新方法被称为 BBWORCPS 算法。高维和复杂的医学数据集给原始优化算法解决 BC 问题带来了挑战,这也是对原始白鲸优化算法进行修改的动机。这些改进包括量子启发突变和循环交叉,旨在改善解空间探索,提高算法处理复杂特征空间的效率。通过对 BC 数据集的综合实验,证明了 BBWORCPS 算法与现有优化方法相比,在特征选择准确性和计算效率方面的优越性。研究结果表明,BBWORCPS 为开发更精确、更可靠的膀胱癌分析预测模型提供了一种可行的方法。
{"title":"A novel binary modified beluga whale optimization algorithm using ring crossover and probabilistic state mutation for enhanced bladder cancer diagnosis","authors":"Hasan Gharaibeh , Noor Aldeen Alawad , Ahmad Nasayreh , Rabia Emhamed Al Mamlook , Sharif Naser Makhadmeh , Ayah Bashkami , Qais Al-Na'amneh , Laith Abualigah , Absalom E. Ezugwu","doi":"10.1016/j.imu.2024.101581","DOIUrl":"10.1016/j.imu.2024.101581","url":null,"abstract":"<div><p>Bladder cancer (BC) remains a significant global health challenge, requiring the development of accurate predictive models for diagnosis. In this study, a new Binary Modified White Whale Optimization (B-MBWO) algorithm is proposed to address the BC problem. The proposed method utilizes circular transitivity optimization and the Probabilistic State Mutation Algorithm (PSMA) to enhance its optimization performance. The new method is called the BBWORCPS algorithm. High-dimensional and complex medical datasets pose challenges to the original optimization algorithms in addressing the BC problem, motivating the proposed modifications to the original Beluga Whale Optimization algorithm. These enhancements, including quantum-inspired mutation and circular crossing, aim to improve solution space exploration and enhance the algorithm's effectiveness in handling intricate feature spaces. Through comprehensive experiments on BC datasets, the superiority of the BBWORCPS algorithm in terms of feature selection accuracy and computational efficiency is demonstrated compared to existing optimization methods. The obtained findings suggest that BBWORCPS offers a promising approach for developing more precise and reliable predictive models for bladder cancer analysis.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"50 ","pages":"Article 101581"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824001370/pdfft?md5=a1c966072915b1573a288b6f81867e25&pid=1-s2.0-S2352914824001370-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142172469","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101582
Japheth Mumo Kimeu, Michael Kisangiri, Hope Mbelwa, Judith Leo
Pneumonia remains a significant global health challenge, demanding innovative solutions. This study presents a novel approach to pneumonia diagnosis and medical imaging analysis, leveraging advanced technologies. The study used a Literature Review Methodology to study various scientific articles and involved healthcare staff, including Doctors, Nurses, Radiologists and the community, in sharing their requirements for the study. The findings led to the proposal for the integration of Deep Learning techniques, including Convolutional Neural Network (CNN), as well as tools like YOLOv8, Roboflow, and Ultralytics, to revolutionize pneumonia detection and classification. The EfficientDet-Lite2 model architecture was subsequently used to generate a TensorFlow Lite Model, deployable in both Android and iOS mobile applications. The study’s outcomes reveal a substantial improvement in the precision and recall metrics. These results signify a promising step forward in empowering healthcare professionals with timely and reliable results for optimal patient management.
{"title":"Deep learning-based mobile application for the enhancement of pneumonia medical imaging analysis: A case-study of West-Meru Hospital","authors":"Japheth Mumo Kimeu, Michael Kisangiri, Hope Mbelwa, Judith Leo","doi":"10.1016/j.imu.2024.101582","DOIUrl":"10.1016/j.imu.2024.101582","url":null,"abstract":"<div><div>Pneumonia remains a significant global health challenge, demanding innovative solutions. This study presents a novel approach to pneumonia diagnosis and medical imaging analysis, leveraging advanced technologies. The study used a Literature Review Methodology to study various scientific articles and involved healthcare staff, including Doctors, Nurses, Radiologists and the community, in sharing their requirements for the study. The findings led to the proposal for the integration of Deep Learning techniques, including Convolutional Neural Network (CNN), as well as tools like YOLOv8, Roboflow, and Ultralytics, to revolutionize pneumonia detection and classification. The EfficientDet-Lite2 model architecture was subsequently used to generate a TensorFlow Lite Model, deployable in both Android and iOS mobile applications. The study’s outcomes reveal a substantial improvement in the precision and recall metrics. These results signify a promising step forward in empowering healthcare professionals with timely and reliable results for optimal patient management.</div></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"50 ","pages":"Article 101582"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142322349","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101592
Sema Athamnah , Enas Abdulhay , Firas Fohely , Ammar A. Oglat , Mohammed Ibbini
Factors of age, gender, and psychiatric comorbidities in epileptic patients, particularly those with drug-resistant epilepsy (DRE), have not received sufficient attention in clinical practice and research, current research in this domain focus primarily on seizure management. Consequently, a detailed investigation of these differences to understand how each gender's brain changes as a prognosis for epilepsy remains lacking. Furthermore, no previous studies delved into the use of 3D structural MRI (sMRI)-based deep neural networks to predict the biological gender (BG) of epileptic patients. To address this gap and gain insights into the structural aspects of epileptic patients' brains, this study proposed various approaches employing sMRI-based deep neural networks for predicting the BG of epileptic patients. Additionally, it will introduce an innovative preprocessing pipeline, the 3D brain pipeline, and compare it with the standard voxel-based morphometry (VBM) pipeline. the results concluded that there are obvious structural brain differences between genders in epileptic patients, which can be effectively predicted by deep learning approaches, despite the variations that could be raised from age and development of epilepsy. The results also showed that the standard VBM pipeline performs novel 3D brain pipeline, achieving higher metrics, including accuracy (0.961) and AUC (0.97). These findings underscore the significance of considering gender-specific brain changes in epilepsy research and clinical practices, where patients should be treated separately based on their gender.
在临床实践和研究中,癫痫患者,尤其是耐药性癫痫(DRE)患者的年龄、性别和精神并发症等因素尚未得到足够重视,目前该领域的研究主要集中在癫痫发作管理方面。因此,目前仍缺乏对这些差异的详细调查,以了解作为癫痫预后的不同性别的大脑是如何变化的。此外,之前没有研究深入探讨如何使用基于三维结构磁共振成像(sMRI)的深度神经网络来预测癫痫患者的生理性别(BG)。为了填补这一空白并深入了解癫痫患者的大脑结构,本研究提出了多种基于sMRI的深度神经网络预测癫痫患者生理性别的方法。研究结果表明,癫痫患者的大脑结构在性别上存在明显差异,尽管年龄和癫痫的发展可能导致差异,但深度学习方法可以有效预测这些差异。研究结果还显示,标准 VBM 管道比新型 3D 大脑管道性能更好,达到了更高的指标,包括准确率(0.961)和 AUC(0.97)。这些发现强调了在癫痫研究和临床实践中考虑特定性别大脑变化的意义,即应根据患者的性别分别对待。
{"title":"Unraveling gender-specific structural brain differences in drug-resistant epilepsy using advanced deep learning techniques","authors":"Sema Athamnah , Enas Abdulhay , Firas Fohely , Ammar A. Oglat , Mohammed Ibbini","doi":"10.1016/j.imu.2024.101592","DOIUrl":"10.1016/j.imu.2024.101592","url":null,"abstract":"<div><div>Factors of age, gender, and psychiatric comorbidities in epileptic patients, particularly those with drug-resistant epilepsy (DRE), have not received sufficient attention in clinical practice and research, current research in this domain focus primarily on seizure management. Consequently, a detailed investigation of these differences to understand how each gender's brain changes as a prognosis for epilepsy remains lacking. Furthermore, no previous studies delved into the use of 3D structural MRI (sMRI)-based deep neural networks to predict the biological gender (BG) of epileptic patients. To address this gap and gain insights into the structural aspects of epileptic patients' brains, this study proposed various approaches employing sMRI-based deep neural networks for predicting the BG of epileptic patients. Additionally, it will introduce an innovative preprocessing pipeline, the 3D brain pipeline, and compare it with the standard voxel-based morphometry (VBM) pipeline. the results concluded that there are obvious structural brain differences between genders in epileptic patients, which can be effectively predicted by deep learning approaches, despite the variations that could be raised from age and development of epilepsy. The results also showed that the standard VBM pipeline performs novel 3D brain pipeline, achieving higher metrics, including accuracy (0.961) and AUC (0.97). These findings underscore the significance of considering gender-specific brain changes in epilepsy research and clinical practices, where patients should be treated separately based on their gender.</div></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"51 ","pages":"Article 101592"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532488","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101595
Samiullah Salim , Fazal Dayan , Muhammad Aziz ur Rehman , Husam A. Neamah
Rubella is an infectious disease that can spread globally. It spreads in the subtropics as well as the tropics. Although it is commonly thought to be a non-fatal condition, there are several circumstances in which it can be fatal. Pregnant women infected with the Rubella virus face a high risk of fetal development. The main goal of this study is to look into a model for the spread of Rubella while considering a vaccination campaign as a control measure. The positivity and boundedness of the re-infection rubella transmission and vaccination model are investigated. The local and global stability of the equilibrium points is examined. The sensitivity of parameters is also investigated. Three different techniques forward Euler, RK-4, and non-standard finite difference (NSFD) method are developed for the numerical solution, and their simulation results are examined. Among these three, the NSFD method is superior due to its convergence and positive behavior for all step size values. For some values of the step size, the other two techniques failed to produce positivity and convergent solutions. Analytically, the proposed model's convergence, positivity, boundedness, and consistency are investigated. Finally, the impact of the Rubella vaccine on infected populations has been examined, revealing that vaccination is one of the most effective ways to prevent rubella transmission.
{"title":"Optimization and control in rubella transmission dynamics: A boundedness-preserving numerical model with vaccination","authors":"Samiullah Salim , Fazal Dayan , Muhammad Aziz ur Rehman , Husam A. Neamah","doi":"10.1016/j.imu.2024.101595","DOIUrl":"10.1016/j.imu.2024.101595","url":null,"abstract":"<div><div>Rubella is an infectious disease that can spread globally. It spreads in the subtropics as well as the tropics. Although it is commonly thought to be a non-fatal condition, there are several circumstances in which it can be fatal. Pregnant women infected with the Rubella virus face a high risk of fetal development. The main goal of this study is to look into a model for the spread of Rubella while considering a vaccination campaign as a control measure. The positivity and boundedness of the re-infection rubella transmission and vaccination model are investigated. The local and global stability of the equilibrium points is examined. The sensitivity of parameters is also investigated. Three different techniques forward Euler, RK-4, and non-standard finite difference (NSFD) method are developed for the numerical solution, and their simulation results are examined. Among these three, the NSFD method is superior due to its convergence and positive behavior for all step size values. For some values of the step size, the other two techniques failed to produce positivity and convergent solutions. Analytically, the proposed model's convergence, positivity, boundedness, and consistency are investigated. Finally, the impact of the Rubella vaccine on infected populations has been examined, revealing that vaccination is one of the most effective ways to prevent rubella transmission.</div></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"51 ","pages":"Article 101595"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101553
Asif Newaz , Abdullah Taharat , Md Sakibul Islam , Khairum Islam , A.G.M. Fuad Hasan Akanda
Ovarian cancer (OC) is one of the most prevalent types of cancer in women. Early and accurate diagnosis is crucial for the survival of the patients. However, the majority of women are diagnosed in advanced stages due to the lack of effective biomarkers and accurate screening tools. While previous studies sought a common biomarker, our study suggests different biomarkers for the premenopausal and postmenopausal populations. This can provide a new perspective in the search for novel predictors for the effective diagnosis of OC. Genetic algorithm has been utilized to identify the most significant biomarkers. The XGBoost classifier is then trained on the selected features and high ROC-AUC scores of 0.864 and 0.911 have been obtained for the premenopausal and postmenopausal populations, respectively. Lack of explainability is one major limitation of current AI systems. The stochastic nature of the ML algorithms raises concerns about the reliability of the system as it is difficult to interpret the reasons behind the decisions. To increase the trustworthiness and accountability of the diagnostic system as well as to provide transparency and explanations behind the predictions, explainable AI has been incorporated into the ML framework. SHAP is employed to quantify the contributions of the selected biomarkers and determine the most discriminative features. Merging SHAP with the ML models enables clinicians to investigate individual decisions made by the model and gain insights into the factors leading to that prediction. Thus, a hybrid decision support system has been established that can eliminate the bottlenecks caused by the black-box nature of the ML algorithms providing a safe and trustworthy AI tool. The diagnostic accuracy obtained from the proposed system outperforms the existing methods as well as the state-of-the-art ROMA algorithm by a substantial margin which signifies its potential to be an effective tool in the differential diagnosis of OC.
卵巢癌(OC)是女性最常见的癌症类型之一。早期准确诊断对患者的生存至关重要。然而,由于缺乏有效的生物标志物和准确的筛查工具,大多数妇女被诊断为晚期。以往的研究寻求一种共同的生物标志物,而我们的研究则提出了绝经前和绝经后人群的不同生物标志物。这为寻找有效诊断 OC 的新型预测指标提供了新的视角。遗传算法被用来识别最重要的生物标志物。然后根据所选特征对 XGBoost 分类器进行训练,绝经前和绝经后人群的 ROC-AUC 分别达到 0.864 和 0.911 的高分。缺乏可解释性是当前人工智能系统的一大局限。人工智能算法的随机性使人担心系统的可靠性,因为很难解释决策背后的原因。为了提高诊断系统的可信度和责任感,并提供预测背后的透明度和解释,可解释人工智能被纳入了 ML 框架。我们采用 SHAP 来量化所选生物标记物的贡献,并确定最具鉴别力的特征。将 SHAP 与 ML 模型合并后,临床医生就能对模型做出的个别决定进行调查,并深入了解导致该预测的因素。这样,一个混合决策支持系统就建立起来了,它可以消除因 ML 算法的黑箱性质而造成的瓶颈,提供安全可信的人工智能工具。拟议系统获得的诊断准确率大大超过了现有方法和最先进的 ROMA 算法,这表明它有可能成为鉴别诊断 OC 的有效工具。
{"title":"An ML-based decision support system for reliable diagnosis of ovarian cancer by leveraging explainable AI","authors":"Asif Newaz , Abdullah Taharat , Md Sakibul Islam , Khairum Islam , A.G.M. Fuad Hasan Akanda","doi":"10.1016/j.imu.2024.101553","DOIUrl":"10.1016/j.imu.2024.101553","url":null,"abstract":"<div><p>Ovarian cancer (OC) is one of the most prevalent types of cancer in women. Early and accurate diagnosis is crucial for the survival of the patients. However, the majority of women are diagnosed in advanced stages due to the lack of effective biomarkers and accurate screening tools. While previous studies sought a common biomarker, our study suggests different biomarkers for the premenopausal and postmenopausal populations. This can provide a new perspective in the search for novel predictors for the effective diagnosis of OC. Genetic algorithm has been utilized to identify the most significant biomarkers. The XGBoost classifier is then trained on the selected features and high ROC-AUC scores of 0.864 and 0.911 have been obtained for the premenopausal and postmenopausal populations, respectively. Lack of explainability is one major limitation of current AI systems. The stochastic nature of the ML algorithms raises concerns about the reliability of the system as it is difficult to interpret the reasons behind the decisions. To increase the trustworthiness and accountability of the diagnostic system as well as to provide transparency and explanations behind the predictions, explainable AI has been incorporated into the ML framework. SHAP is employed to quantify the contributions of the selected biomarkers and determine the most discriminative features. Merging SHAP with the ML models enables clinicians to investigate individual decisions made by the model and gain insights into the factors leading to that prediction. Thus, a hybrid decision support system has been established that can eliminate the bottlenecks caused by the black-box nature of the ML algorithms providing a safe and trustworthy AI tool. The diagnostic accuracy obtained from the proposed system outperforms the existing methods as well as the state-of-the-art ROMA algorithm by a substantial margin which signifies its potential to be an effective tool in the differential diagnosis of OC.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"49 ","pages":"Article 101553"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824001096/pdfft?md5=f84a6ad93580e45a6eaf14e1905d10d1&pid=1-s2.0-S2352914824001096-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141845051","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01DOI: 10.1016/j.imu.2024.101583
Baris Balaban , Caglar Yilgor , Altug Yucekul , Tais Zulemyan , Ibrahim Obeid , Javier Pizones , Frank Kleinstueck , Francisco Javier Sanchez Perez-Grueso , Ferran Pellise , Ahmet Alanay , Osman Ugur Sezerman , European Spine Study Group
{"title":"Corrigendum to “Building clinically actionable models for predicting mechanical complications in postoperatively well-aligned adult spinal deformity patients using XGBoost algorithm” Informatics in Medicine Unlocked Volume 37, 2023, 101191","authors":"Baris Balaban , Caglar Yilgor , Altug Yucekul , Tais Zulemyan , Ibrahim Obeid , Javier Pizones , Frank Kleinstueck , Francisco Javier Sanchez Perez-Grueso , Ferran Pellise , Ahmet Alanay , Osman Ugur Sezerman , European Spine Study Group","doi":"10.1016/j.imu.2024.101583","DOIUrl":"10.1016/j.imu.2024.101583","url":null,"abstract":"","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"50 ","pages":"Article 101583"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Terminalia Catappa fruits are recognized for their use in diabetes treatment, yet the mechanism by which they inhibit diabetes-related enzymes remain largely undefined. This study aimed to elucidate the therapeutic potential and interactions of T. catappa fruit extract through in vitro and in silico approaches. The compounds from T. catappa fruit were extracted using microwave-assisted extraction techniques, followed by qualitative phytochemical screening and quantitative analysis via GC-MS. The physicochemical properties were evaluated according to the Lipinski rule and ADMET criteria. Antidiabetic analyses, both in vitro and in silico, were performed on the secondary metabolites found in T. catappa fruit, targeting α-amylase and α-glucosidase enzymes. The methanol and ethyl acetate extracts of T. catappa fruit contained alkaloids, flavonoids, saponins, steroids, and terpenoids. These extracts inhibited α-glucosidase and α-amylase in a dose-dependent manner, with the methanol extract of T. catappa showing significantly higher inhibitory activity than pure acarbose (by two- and five-fold, respectively) and the ethyl acetate extract. Furthermore, the antioxidant activity of the methanolic extract was seven times greater than that of the ethyl acetate extract. Molecular docking studies supported these findings, revealing that the ΔG values of gibberellic acid, rescinnamine, and digoxin were comparable to those of acarbose. Notably, digoxin has higher ΔG values against α-amylase than acarbose, while gibberellic acid, rescinnamine, and nerolidol showed ΔG values similar to acarbose. Gibberellic acid, unique to the methanol extract, demonstrated high ΔG values, suggesting its significant role in the extract's enhanced glucosidase and amylase inhibitory activities. This study identifies specific compounds (digitoxin, rescinnamine, gibberellic acid, and nerolidol) and proposes the potential of multi-target drugs in diabetes treatment. Understanding these phytochemical constituents and their effects on diabetes-involved enzymes could benefit individuals with type 2 diabetes, particularly those at higher risk of complications.
卡塔帕(Terminalia Catappa)果实被公认可用于治疗糖尿病,但其抑制糖尿病相关酶的机制在很大程度上仍未确定。本研究旨在通过体外和硅学方法阐明 T. catappa 果实提取物的治疗潜力和相互作用。采用微波辅助萃取技术提取 T. catappa 果实中的化合物,然后进行植物化学定性筛选和气相色谱-质谱定量分析。理化性质根据利宾斯基规则和 ADMET 标准进行评估。针对 T. catappa 果实中的α-淀粉酶和α-葡萄糖苷酶次生代谢物进行了体外和体内抗糖尿病分析。T. catappa 果实的甲醇和乙酸乙酯提取物中含有生物碱、黄酮类、皂苷、类固醇和萜类化合物。这些提取物对α-葡萄糖苷酶和α-淀粉酶的抑制作用呈剂量依赖性,其中 T. catappa 的甲醇提取物的抑制活性明显高于纯阿卡波糖(分别是纯阿卡波糖的 2 倍和 5 倍)和乙酸乙酯提取物。此外,甲醇提取物的抗氧化活性是乙酸乙酯提取物的七倍。分子对接研究证实了这些发现,显示赤霉素、间苯二酚和地高辛的 ΔG 值与阿卡波糖相当。值得注意的是,地高辛对α-淀粉酶的ΔG值高于阿卡波糖,而赤霉素、间苯二酚和橙花醇的ΔG值与阿卡波糖相似。甲醇提取物中独有的赤霉素显示出较高的ΔG 值,这表明赤霉素在提高提取物的葡萄糖苷酶和淀粉酶抑制活性方面发挥了重要作用。这项研究确定了特定的化合物(地高辛、rescinnamine、赤霉素和橙花醇),并提出了多靶点药物在糖尿病治疗中的潜力。了解这些植物化学成分及其对糖尿病相关酶的影响,可使 2 型糖尿病患者,尤其是并发症风险较高的患者受益。
{"title":"Phytoconstituents of Terminalia catappa linn fruits extract exhibit promising antidiabetic activities against α-amylase and α-glucosidase in vitro and in silico","authors":"Fitri Amelia , Hesty Parbuntari , Iryani , Ikhwan Resmala Sudji , Sherly Rahmayani , Andini Novita Ramadhani , Shilvira Ananda","doi":"10.1016/j.imu.2024.101509","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101509","url":null,"abstract":"<div><p><em>Terminalia Catappa</em> fruits are recognized for their use in diabetes treatment, yet the mechanism by which they inhibit diabetes-related enzymes remain largely undefined. This study aimed to elucidate the therapeutic potential and interactions of <em>T. catappa</em> fruit extract through in vitro and in silico approaches. The compounds from <em>T. catappa</em> fruit were extracted using microwave-assisted extraction techniques, followed by qualitative phytochemical screening and quantitative analysis via GC-MS. The physicochemical properties were evaluated according to the Lipinski rule and ADMET criteria. Antidiabetic analyses, both in vitro and in silico, were performed on the secondary metabolites found in <em>T. catappa</em> fruit, targeting α-amylase and α-glucosidase enzymes. The methanol and ethyl acetate extracts of <em>T. catappa</em> fruit contained alkaloids, flavonoids, saponins, steroids, and terpenoids. These extracts inhibited α-glucosidase and α-amylase in a dose-dependent manner, with the methanol extract of <em>T. catappa</em> showing significantly higher inhibitory activity than pure acarbose (by two- and five-fold, respectively) and the ethyl acetate extract. Furthermore, the antioxidant activity of the methanolic extract was seven times greater than that of the ethyl acetate extract. Molecular docking studies supported these findings, revealing that the ΔG values of gibberellic acid, rescinnamine, and digoxin were comparable to those of acarbose. Notably, digoxin has higher ΔG values against α-amylase than acarbose, while gibberellic acid, rescinnamine, and nerolidol showed ΔG values similar to acarbose. Gibberellic acid, unique to the methanol extract, demonstrated high ΔG values, suggesting its significant role in the extract's enhanced glucosidase and amylase inhibitory activities. This study identifies specific compounds (digitoxin, rescinnamine, gibberellic acid, and nerolidol) and proposes the potential of multi-target drugs in diabetes treatment. Understanding these phytochemical constituents and their effects on diabetes-involved enzymes could benefit individuals with type 2 diabetes, particularly those at higher risk of complications.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"47 ","pages":"Article 101509"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000650/pdfft?md5=62814af97b04dae9e580eeacf93cd84a&pid=1-s2.0-S2352914824000650-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140842636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Reverse vaccinology is an emerging concept in the field of vaccine development as it facilitates the identification of potential vaccine candidates. Biomedical research has been revolutionized with the recent innovations in Generative Artificial Intelligence (AI) and Large Language Models (LLMs). The intersection of these two technologies is explored in this study. In this study, the impact of Generative AI and LLMs in the field of vaccinology is explored. Through a comprehensive analysis of existing research, prospective use cases, and an experimental case study, this research highlights that LLMs and Generative AI have the potential to enhance the efficiency and accuracy of vaccine candidate identification. This work also discusses the ethical and privacy challenges, such as data consent and potential biases, raised by such applications that require careful consideration. This study paves the way for experts, researchers, and policymakers to further investigate the role and impact of Generative AI and LLM in vaccinology and medicine.
{"title":"Generative AI and large language models: A new frontier in reverse vaccinology","authors":"Kadhim Hayawi , Sakib Shahriar , Hany Alashwal , Mohamed Adel Serhani","doi":"10.1016/j.imu.2024.101533","DOIUrl":"https://doi.org/10.1016/j.imu.2024.101533","url":null,"abstract":"<div><p>Reverse vaccinology is an emerging concept in the field of vaccine development as it facilitates the identification of potential vaccine candidates. Biomedical research has been revolutionized with the recent innovations in Generative Artificial Intelligence (AI) and Large Language Models (LLMs). The intersection of these two technologies is explored in this study. In this study, the impact of Generative AI and LLMs in the field of vaccinology is explored. Through a comprehensive analysis of existing research, prospective use cases, and an experimental case study, this research highlights that LLMs and Generative AI have the potential to enhance the efficiency and accuracy of vaccine candidate identification. This work also discusses the ethical and privacy challenges, such as data consent and potential biases, raised by such applications that require careful consideration. This study paves the way for experts, researchers, and policymakers to further investigate the role and impact of Generative AI and LLM in vaccinology and medicine.</p></div>","PeriodicalId":13953,"journal":{"name":"Informatics in Medicine Unlocked","volume":"48 ","pages":"Article 101533"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352914824000893/pdfft?md5=a4c6a31b21f623150e5a40e26bd9227a&pid=1-s2.0-S2352914824000893-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141438245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}