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2013 International Workshop on Pattern Recognition in Neuroimaging最新文献

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Fast Clustering for Interactive Tractography Segmentation 交互式轨迹图分割的快速聚类
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.20
E. Olivetti, Thien Bao Nguyen, E. Garyfallidis, Nivedita Agarwal, P. Avesani
We developed a novel interactive system for human brain tractography segmentation to assist neuroanatomists in identifying white matter anatomical structures of interest from diffusion magnetic resonance imaging (dMRI) data. The difficulty in segmenting and navigating tractographies lies in the very large number of reconstructed neuronal pathways, i.e. the streamlines, which are in the order of hundreds of thousands with modern dMRI techniques. The novelty of our system resides in presenting the user a clustered version of the tractography in which she selects some of the clusters to identify a superset of the streamlines of interest. This superset is then re-clustered at a finer scale and again the user is requested to select the relevant clusters. The process of re-clustering and manual selection is iterated until the remaining streamlines faithfully represent the desired anatomical structure of interest. In this work we present a solution to solve the computational issue of clustering a large number of streamlines under the strict time constraints requested by the interactive use. The solution consists in embedding the streamlines into a Euclidean space and then in adopting a state-of-the art scalable implementation of the k-means algorithm. We tested the proposed system on tractographies from amyotrophic lateral sclerosis (ALS) patients and healthy subjects that we collected for a forthcoming study about the systematic differences between their corticospinal tracts.
我们开发了一种新的交互式系统,用于人脑束状图分割,以帮助神经解剖学家从扩散磁共振成像(dMRI)数据中识别感兴趣的白质解剖结构。神经束图分割和导航的困难在于重建的神经元通路数量非常大,即流线,用现代dMRI技术可以达到数十万个数量级。我们系统的新颖之处在于向用户展示了一个束状图的聚类版本,用户可以在其中选择一些簇来识别感兴趣的流线的超集。然后以更小的规模重新聚集这个超集,并再次要求用户选择相关的集群。重复重新聚类和人工选择的过程,直到剩余的流线忠实地代表感兴趣的所需解剖结构。在此工作中,我们提出了一种解决大量流线在交互使用所要求的严格时间限制下聚类计算问题的解决方案。解决方案包括将流线嵌入欧几里得空间,然后采用最先进的k-means算法的可扩展实现。我们在肌萎缩性侧索硬化症(ALS)患者和健康受试者的束束造影上测试了该系统,我们收集了这些受试者用于即将进行的关于他们皮质脊髓束系统差异的研究。
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引用次数: 11
Classification of Structured EEG Tensors Using Nuclear Norm Regularization: Improving P300 Classification 基于核范数正则化的结构化脑电张量分类:改进P300分类
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.34
B. Hunyadi, Marco Signoretto, S. Debener, S. Huffel, M. Vos
Choosing an appropriate approach for single-trial EEG classification is a key factor in brain computer interfaces (BCIs). Here we consider an auditory oddball paradigm, recorded in normal indoor and walking outdoor conditions. The signal of interest, namely the P300 component of the event related potential (ERP), unlike noise, is a structured signal in the multidimensional space spanned by channels, time and frequency or possibly other types of features. Therefore, we apply spectral regularization using nuclear norm on a tensorial representation of the EEG data. Due to the a-priori structural information conveyed by the nuclear norm penalty, we expect an improved performance compared to traditional approaches, especially under noisy conditions and in case of small sample sizes.
选择合适的方法进行单次脑电分类是脑机接口(bci)的关键。在这里,我们考虑一个听觉怪异的范式,记录在正常的室内和室外步行条件。感兴趣的信号,即事件相关电位(ERP)的P300分量,与噪声不同,是由通道、时间和频率或可能的其他类型特征所跨越的多维空间中的结构化信号。因此,我们使用核范数对脑电图数据的张量表示应用谱正则化。由于核范数惩罚传递的先验结构信息,我们期望与传统方法相比,特别是在噪声条件下和小样本量的情况下,性能得到改善。
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引用次数: 6
Comparing Structural Brain Connectivity by the Infinite Relational Model 用无限关系模型比较脑结构连通性
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.22
Karen Sandø Ambrosen, Tue Herlau, T. Dyrby, Mikkel N. Schmidt, Morten Mørup
The growing focus in neuroimaging on analyzing brain connectivity calls for powerful and reliable statistical modeling tools. We examine the Infinite Relational Model (IRM) as a tool to identify and compare structure in brain connectivity graphs by contrasting its performance on graphs from the same subject versus graphs from different subjects. The inferred structure is most consistent between graphs from the same subject, however, the model is able to predict links in graphs from different subjects on par with results within a subject. The framework proposed can be used as a statistical modeling tool for the identification of structure and quantification of similarity in graphs of brain connectivity in general.
神经影像学对分析大脑连通性的日益关注需要强大而可靠的统计建模工具。我们研究了无限关系模型(IRM)作为识别和比较大脑连接图结构的工具,通过对比其在来自同一受试者和来自不同受试者的图上的表现。来自同一主题的图之间的推断结构是最一致的,但是,该模型能够预测来自不同主题的图中的链接,就像预测一个主题内的结果一样。该框架可以作为一种统计建模工具,用于识别大脑连接图的结构和量化相似度。
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引用次数: 17
Wrapper Methods to Correct Mislabelled Training Data 纠正错误标记训练数据的包装方法
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.51
Jonathan Young, J. Ashburner, S. Ourselin
Machine learning has obvious applications to the diagnosis of disease, and for many neurological conditions features extracted from brain images allow classifiers based on neuroimaging biomarkers to provide a useful complement to more traditional diagnostic methods based on symptoms and psychological testing. However the labels used in the training of such systems frequently depend on standard clinical diagnostic methods, meaning they are not completely reliable in many cases. This uncertainty makes the problems this causes hard to study, as it is difficult to measure both the extent of mislabelling and its effect on results. To avoid this problem, we perform classification of gender based on imaging, as this is definitely known for each subject. We then deliberately make known proportions of the training labels incorrect. This allows us to assess the effect of the level of label noise on classification accuracy, and evaluate methods that allow for the mislabelled data. The methods are wrappers using existing well known classifier algorithms. The results indicate that the methods can be significantly effective at realistic levels of noise in the training labels, but care must be taken in choosing which method to apply depending on the level of label noise.
机器学习在疾病诊断方面有明显的应用,对于许多从大脑图像中提取的神经系统疾病特征,基于神经成像生物标志物的分类器可以为基于症状和心理测试的传统诊断方法提供有用的补充。然而,这些系统训练中使用的标签往往依赖于标准的临床诊断方法,这意味着它们在许多情况下并不完全可靠。这种不确定性使得由此引起的问题难以研究,因为很难衡量错误标签的程度及其对结果的影响。为了避免这个问题,我们根据图像进行性别分类,因为这对每个受试者都是已知的。然后,我们故意使已知的训练标签比例不正确。这使我们能够评估标签噪声水平对分类准确性的影响,并评估允许错误标记数据的方法。这些方法是使用现有的众所周知的分类器算法进行包装。结果表明,这些方法在训练标签的实际噪声水平下可以显着有效,但必须注意根据标签噪声水平选择应用哪种方法。
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引用次数: 14
Automatic White Matter Fiber Clustering Using Dominant Sets 基于优势集的白质纤维自动聚类
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.62
Luca Dodero, Sebastiano Vascon, L. Giancardo, A. Gozzi, Diego Sona, Vittorio Murino
We present an unsupervised approach based on the Dominant Sets framework to automatically segment the white matter fibers into bundles. This framework, rooted in the Game Theory, allows for the automatic determination of the number of clusters from the data itself, without any prior assumption. The clustered bundles are a key information for the generation of unbiased structural connectivity atlases. We have thoroughly validated our algorithm both quantitatively and qualitatively. Indeed, we used biologically plausible synthetic datasets to numerically validate the performance in terms of Precision, Recall and other measures employed in the literature. We also evaluated the algorithm on a real Diffusion Tensor Imaging tractography of a whole mouse brain obtaining promising results. In fact, some of the most prominent brain structures determined by the algorithm correspond to white matter expected anatomy.
提出了一种基于优势集框架的无监督方法来自动分割脑白质纤维束。这个基于博弈论的框架允许从数据本身自动确定集群的数量,而不需要任何预先假设。聚类束是生成无偏结构连通性图谱的关键信息。我们已经从数量和质量上彻底验证了我们的算法。事实上,我们使用生物学上合理的合成数据集,在精度、召回率和文献中采用的其他措施方面对性能进行了数值验证。我们还在真实的全脑扩散张量成像(Diffusion Tensor Imaging tractography)上对该算法进行了评估,获得了令人满意的结果。事实上,该算法确定的一些最突出的大脑结构与预期的白质解剖结构相对应。
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引用次数: 9
Sparse Source EEG Imaging with the Variational Garrote 稀疏源脑电图变喉成像
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.36
Sofie Therese Hansen, Carsten Stahlhut, L. K. Hansen
EEG imaging, the estimation of the cortical source distribution from scalp electrode measurements, poses an extremely ill-posed inverse problem. Recent work by Delorme et al. (2012) supports the hypothesis that distributed source solutions are sparse. We show that direct search for sparse solutions as implemented by the Variational Garrote (Kappen, 2011) provides excellent estimates compared with other widely used schemes, is computationally attractive, and by its separation of 'where' and 'what' degrees of freedom paves the road for the introduction of genuine prior information.
脑电成像,从头皮电极测量中估计皮层源分布,提出了一个极不病态的逆问题。Delorme等人(2012)最近的工作支持分布式源解决方案是稀疏的假设。我们表明,与其他广泛使用的方案相比,由变分Garrote (Kappen, 2011)实现的稀疏解的直接搜索提供了很好的估计,在计算上很有吸引力,并且通过分离“在哪里”和“什么”自由度为引入真正的先验信息铺平了道路。
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引用次数: 7
Gender-Specific Effects of Health and Lifestyle Markers on Individual BrainAGE 健康和生活方式标记对个体脑年龄的性别特异性影响
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.33
K. Franke, M. Ristow, Christian Gaser
This study quantifies the effects of health and lifestyle markers on individual brain aging in dementia-free elderly subjects, revealed by a relevance vector regression approach. In males, markers of metabolic syndrome as well as alcohol abuse were significantly related to increased Brain AGE scores of up to 9 years. In females, markers of healthy liver and kidney functions and an adequate supply of nutrients were significantly related to decreased Brain AGE scores.
本研究量化了健康和生活方式标志物对无痴呆老年受试者个体大脑衰老的影响,揭示了相关向量回归方法。在男性中,代谢综合征的标志物和酒精滥用与大脑年龄评分的增加显著相关,最长可达9岁。在女性中,健康的肝肾功能标记物和充足的营养供应与降低的脑AGE评分显著相关。
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引用次数: 6
Semi-spatiotemporal fMRI Brain Decoding 半时空功能磁共振大脑解码
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.54
M. H. Kefayati, H. Sheikhzadeh, H. Rabiee, A. Soltani-Farani
Functional behavior of the brain can be captured using functional Magnetic Resonance Imaging (fMRI). Even though fMRI signals have temporal and spatial structures, most studies have neglected the temporal structure when inferring mental states (brain decoding). This has two main side effects: 1. Degradation in brain decoding performance due to lack of temporal information in the model, 2. Inability to provide temporal interpretability. Few studies have targeted this issue but have had less success due to the burdening challenges related to high feature-to-instance ratio. In this study, a novel model for incorporating temporal information while maintaining a low feature-to-instance ratio, is proposed. Experimental results show the effectiveness of the model compared to recent state of the art approaches.
大脑的功能行为可以用功能性磁共振成像(fMRI)来捕捉。尽管fMRI信号具有时间和空间结构,但大多数研究在推断心理状态(大脑解码)时忽略了时间结构。这有两个主要的副作用:由于模型中缺乏时间信息,导致大脑解码性能下降;无法提供时间可解释性。很少有研究针对这个问题,但由于与高特征实例比相关的负担挑战,成功的研究较少。在这项研究中,提出了一种新的模型,用于在保持低特征实例比的同时融合时间信息。实验结果表明,该模型与现有方法相比是有效的。
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引用次数: 4
Detection of Transient Inter-regional Coupling in fMRI Time Series: A New Method Combining Inter-subjects Synchronization and Cluster-Analyses fMRI时间序列中瞬态区域间耦合检测:一种结合主体间同步和聚类分析的新方法
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.39
Cécile Bordier, E. Macaluso
We present a new method for the analysis of fMRI time series. The aim is to identify functionally-relevant transient "bursts" of inter-regional coupling between brain areas, using a fully data-driven approach. We use inter-subjects synchronization (i.e. correlation between time series of different subjects who are presented with the same sensory input) to isolate relevant transients in the fMRI time series. Next, we apply a first cluster analysis to group together areas that show such synchronized activity in a concurrent manner. Finally, a second cluster analysis identifies patterns of the fMRI signal that repeat consistently across the different transients. The final output of the analysis is a set of networks that show transient patterns of functionally relevant fMRI signal, consistently over specific windows of the time series. Importantly, the fMRI signal can differ between different areas belonging to the same network. This new approach is particularly suited to investigate multi-components control processes using naturalistic stimuli during fMRI.
提出了一种新的功能磁共振成像时间序列分析方法。目的是利用完全数据驱动的方法,识别与功能相关的大脑区域间耦合的短暂“爆发”。我们使用被试间同步(即不同被试的时间序列之间的相关性)来分离fMRI时间序列中的相关瞬变。接下来,我们应用第一个聚类分析,将以并发方式显示这种同步活动的区域分组在一起。最后,第二个聚类分析确定了fMRI信号在不同瞬态中一致重复的模式。分析的最终输出是一组网络,这些网络显示功能相关的fMRI信号的瞬态模式,在时间序列的特定窗口上保持一致。重要的是,fMRI信号可以在属于同一网络的不同区域之间有所不同。这种新方法特别适合于在功能磁共振成像中使用自然刺激来研究多组分控制过程。
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引用次数: 1
A Comparison of Metrics and Algorithms for Fiber Clustering 光纤聚类的度量和算法比较
Pub Date : 2013-06-22 DOI: 10.1109/PRNI.2013.56
Viviana Siless, Sergio Medina, G. Varoquaux, B. Thirion
Diffusion-weighted Magnetic Resonance Imaging (dMRI) can unveil the microstructure of the brain white matter. The analysis of the anisotropy observed in the dMRI contrast with tractography methods can help to understand the pattern of connections between brain regions and characterize neurological diseases. Because of the amount of information produced by such analyses and the errors carried by the reconstruction step, it is necessary to simplify this output. Clustering algorithms can be used to group samples that are similar according to a given metric. We propose to explore the well-known clustering algorithm k-means and a recently available one, Quick Bundles [1]. We propose an efficient procedure to associate k-means with Point Density Model, a recently proposed metric to analyze geometric structures. We analyze the performance and usability of these algorithms on manually labeled data and a database a 10 subjects.
弥散加权磁共振成像(dMRI)可以揭示脑白质的微观结构。dMRI观察到的各向异性与神经束造影方法的对比分析可以帮助理解脑区域之间的连接模式和表征神经系统疾病。由于这种分析产生的信息量和重建步骤所带来的误差,有必要简化这种输出。聚类算法可用于根据给定的度量对相似的样本进行分组。我们建议探索著名的聚类算法k-means和最近可用的Quick Bundles[1]。我们提出了一种将k-means与最近提出的用于分析几何结构的度量点密度模型(Point Density Model)相关联的有效方法。我们分析了这些算法在人工标记数据和包含10个主题的数据库上的性能和可用性。
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引用次数: 17
期刊
2013 International Workshop on Pattern Recognition in Neuroimaging
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