首页 > 最新文献

Journal of capillary electrophoresis最新文献

英文 中文
Metastasis-associated gene signature in primary myxoid liposarcoma identified through a gene expression study 通过基因表达研究鉴定原发性黏液样脂肪肉瘤转移相关基因特征
Pub Date : 2017-01-01 DOI: 10.2198/JELECTROPH.61.9
Zhiwei Qiao, Takashi Tajima, F. Kito, Y. Arai, A. Kawai, T. Kondo
Myxoid liposarcoma (MLS) is a rare mesenchymal malignancy with unique extrapulmonary metastatic potential. Although MLS has been associated with specific chromosomal translocations, the factors and pathways regulating metastasis in MLS remain unknown. To identify the molecular mechanisms underlying MLS metastasis, we compared global gene expression profiles of primary tumor tissues from MLS patients with different metastatic statuses using DNA microarray analysis. In total, 393 genes were differentially expressed between the tumors from four patients with metastasis and those from 11 patients without metastasis. Differentially expressed genes were functionally annotated based on Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. Supervised classification based on the 393 genes clearly discriminated samples according to metastatic status. The pathways responsible for metastasis included “focal adhesion,” “pathways in cancer,” “ECM-receptor interaction,” and “tight junction.” The differential expression of alpha-synuclein was confirmed at the protein level; the protein was downregulated in metastatic MLS. Meta-analysis revealed that MLS could be discriminated from the other sarcomas based on the expression of the metastasis-associated genes. The metastasis-associated genes identified in this study are worthwhile further investigation to further our understanding of MLS and are expected to lead to novel clinical applications for MLS.
黏液样脂肪肉瘤(MLS)是一种罕见的间充质恶性肿瘤,具有独特的肺外转移潜力。虽然MLS与特定的染色体易位有关,但调节MLS转移的因素和途径仍不清楚。为了确定MLS转移的分子机制,我们使用DNA微阵列分析比较了不同转移状态的MLS患者原发肿瘤组织的整体基因表达谱。共有393个基因在4例转移患者和11例无转移患者的肿瘤中差异表达。基于京都基因与基因组百科全书(KEGG)通路分析对差异表达基因进行功能注释。基于393个基因的监督分类根据转移状态明确区分样本。负责转移的途径包括“局灶黏附”、“癌症途径”、“ecm受体相互作用”和“紧密连接”。在蛋白水平上证实了α -突触核蛋白的差异表达;该蛋白在转移性MLS中下调。荟萃分析显示,MLS可以根据转移相关基因的表达与其他肉瘤区分。本研究中发现的转移相关基因值得进一步研究,以进一步加深我们对MLS的理解,并有望为MLS带来新的临床应用。
{"title":"Metastasis-associated gene signature in primary myxoid liposarcoma identified through a gene expression study","authors":"Zhiwei Qiao, Takashi Tajima, F. Kito, Y. Arai, A. Kawai, T. Kondo","doi":"10.2198/JELECTROPH.61.9","DOIUrl":"https://doi.org/10.2198/JELECTROPH.61.9","url":null,"abstract":"Myxoid liposarcoma (MLS) is a rare mesenchymal malignancy with unique extrapulmonary metastatic potential. Although MLS has been associated with specific chromosomal translocations, the factors and pathways regulating metastasis in MLS remain unknown. To identify the molecular mechanisms underlying MLS metastasis, we compared global gene expression profiles of primary tumor tissues from MLS patients with different metastatic statuses using DNA microarray analysis. In total, 393 genes were differentially expressed between the tumors from four patients with metastasis and those from 11 patients without metastasis. Differentially expressed genes were functionally annotated based on Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. Supervised classification based on the 393 genes clearly discriminated samples according to metastatic status. The pathways responsible for metastasis included “focal adhesion,” “pathways in cancer,” “ECM-receptor interaction,” and “tight junction.” The differential expression of alpha-synuclein was confirmed at the protein level; the protein was downregulated in metastatic MLS. Meta-analysis revealed that MLS could be discriminated from the other sarcomas based on the expression of the metastasis-associated genes. The metastasis-associated genes identified in this study are worthwhile further investigation to further our understanding of MLS and are expected to lead to novel clinical applications for MLS.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"164 1","pages":"9-15"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77265571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Secretomics identifies follistatin as a predictive biomarker for response to treatment with tyrosine kinase inhibitors in synovial sarcoma Secretomics鉴定卵泡listatin作为滑膜肉瘤中酪氨酸激酶抑制剂治疗反应的预测性生物标志物
Pub Date : 2017-01-01 DOI: 10.2198/JELECTROPH.61.1
Zhiwei Qiao, F. Kito, Y. Takai, R. Oyama, T. Kondo
SUMMARY Sarcoma is a rare malignancy with an aggressive clinical course. Tyrosine kinase inhibitors (TKIs) have emerged as effective drugs in targeted therapy for malignancies; in particular, pazopanib was recently approved for the treatment of sarcoma. However, as only a limited proportion of patients exhibit favorable response to treatment with TKIs, predictive biomarkers of response to these drugs are urgently needed. In this study, we attempted to identify predictive biomarkers for response to TKIs in synovial sarcoma. We performed a magnetic bead–based assay (Bio-Plex) using synovial sarcoma cell culture supernatant and validated the results by ELISA and western blotting. Cellular protein and mRNA expression levels of candidate biomarkers were evaluated by western blotting and RT-PCR. Gene expression profiling of candidate biomarkers was conducted by meta-analysis of publicly available gene expression data from 149 patients with synovial sarcoma. We found that follistatin (FST) was significantly highly expressed in TKI-resistant cells. Moreover, cell proliferation was decreased following gene silencing of FST . Meta-analysis revealed that the mRNA expression of FST varied among the 149 patients with synovial sarcoma, and that 23 genes were co-expressed with FST ; these included genes encoding receptor tyrosine kinase-like orphan receptor 1, Sal-like protein 4, and signal transducer CD24. This study suggested that FST represents a candidate predictive biomarker for response to treatment with TKIs in synovial sarcoma. Secretomics is a promising approach for predictive biomarker exploration. The utility of FST as a predictive biomarker for response to treatment with TKIs in synovial sarcoma should be further validated using clinical samples.
肉瘤是一种罕见的恶性肿瘤,具有侵袭性的临床病程。酪氨酸激酶抑制剂(TKIs)已成为恶性肿瘤靶向治疗的有效药物;特别是,帕唑帕尼最近被批准用于治疗肉瘤。然而,由于只有有限比例的患者对TKIs治疗表现出良好的反应,因此迫切需要对这些药物反应的预测性生物标志物。在这项研究中,我们试图确定滑膜肉瘤对TKIs反应的预测性生物标志物。我们使用滑膜肉瘤细胞培养上清进行磁珠检测(Bio-Plex),并通过ELISA和western blotting验证结果。采用western blotting和RT-PCR检测候选生物标志物的细胞蛋白和mRNA表达水平。通过荟萃分析149例滑膜肉瘤患者的公开基因表达数据,对候选生物标志物进行基因表达谱分析。我们发现卵泡listatin (FST)在tki耐药细胞中显著高表达。此外,FST基因沉默后,细胞增殖能力下降。meta分析显示,149例滑膜肉瘤患者中FST mRNA表达存在差异,其中23个基因与FST共表达;这些基因包括编码酪氨酸激酶样孤儿受体1、sal样蛋白4和信号传感器CD24的基因。这项研究表明,FST是滑膜肉瘤TKIs治疗反应的候选预测性生物标志物。分泌组学是一种很有前途的预测性生物标志物探索方法。FST作为滑膜肉瘤TKIs治疗反应的预测性生物标志物的效用应通过临床样本进一步验证。
{"title":"Secretomics identifies follistatin as a predictive biomarker for response to treatment with tyrosine kinase inhibitors in synovial sarcoma","authors":"Zhiwei Qiao, F. Kito, Y. Takai, R. Oyama, T. Kondo","doi":"10.2198/JELECTROPH.61.1","DOIUrl":"https://doi.org/10.2198/JELECTROPH.61.1","url":null,"abstract":"SUMMARY Sarcoma is a rare malignancy with an aggressive clinical course. Tyrosine kinase inhibitors (TKIs) have emerged as effective drugs in targeted therapy for malignancies; in particular, pazopanib was recently approved for the treatment of sarcoma. However, as only a limited proportion of patients exhibit favorable response to treatment with TKIs, predictive biomarkers of response to these drugs are urgently needed. In this study, we attempted to identify predictive biomarkers for response to TKIs in synovial sarcoma. We performed a magnetic bead–based assay (Bio-Plex) using synovial sarcoma cell culture supernatant and validated the results by ELISA and western blotting. Cellular protein and mRNA expression levels of candidate biomarkers were evaluated by western blotting and RT-PCR. Gene expression profiling of candidate biomarkers was conducted by meta-analysis of publicly available gene expression data from 149 patients with synovial sarcoma. We found that follistatin (FST) was significantly highly expressed in TKI-resistant cells. Moreover, cell proliferation was decreased following gene silencing of FST . Meta-analysis revealed that the mRNA expression of FST varied among the 149 patients with synovial sarcoma, and that 23 genes were co-expressed with FST ; these included genes encoding receptor tyrosine kinase-like orphan receptor 1, Sal-like protein 4, and signal transducer CD24. This study suggested that FST represents a candidate predictive biomarker for response to treatment with TKIs in synovial sarcoma. Secretomics is a promising approach for predictive biomarker exploration. The utility of FST as a predictive biomarker for response to treatment with TKIs in synovial sarcoma should be further validated using clinical samples.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"56 1","pages":"1-7"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79826877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
A proteomic approach for the analysis of S-nitrosylated proteins using a fluorescence labeling technique 利用荧光标记技术分析s -亚硝基化蛋白质的蛋白质组学方法
Pub Date : 2016-01-01 DOI: 10.2198/JELECTROPH.60.5
Toshihiro Yoshimura, K. Kurogi, Ming-Cheh Liu, M. Suiko, Y. Sakakibara
S-nitrosylation, a post-translational modification of the thiol group of cysteine residues by nitric oxide (NO), has emerged as a new mode of signal transduction and regulation of protein function. It has recently been shown that S-nitrosylation may result in various protein dysfunctions. However, an improved S-nitrosylation analysis method is needed to achieve high sensitivity and quantitative accuracy. We hypothesized that an analysis method using fluorescence dye could detect S-nitrosylated proteins at a higher sensitivity than that of the conventional method. In this study, we developed a procedure for analyzing S-nitrosylated proteins using CyDye (the CyDye switch method). This CyDye switch method for detecting S-nitrosylated proteins was developed based on the biotin-switch method for analyzing S-nitrosylated proteins. We analyzed NO donor-induced S-nitrosylated proteins in a model protein and at the cellular level. We demonstrated that this CyDye switch method could detect specific S-nitrosylated proteins using SDS-PAGE and mass spectrometry. Our results indicate that the optimized CyDye switch method is suitable for the detection of the post-translational S-nitrosylation of proteins.
s -亚硝基化是一氧化氮(NO)对半胱氨酸残基巯基的翻译后修饰,已成为一种新的信号转导和蛋白质功能调节模式。最近有研究表明,s -亚硝基化可导致多种蛋白质功能障碍。然而,需要一种改进的s -亚硝基化分析方法来实现高灵敏度和定量准确性。我们假设使用荧光染料的分析方法能够以比传统方法更高的灵敏度检测s -亚硝基化蛋白。在这项研究中,我们开发了一种使用CyDye (CyDye开关法)分析s -亚硝基化蛋白的方法。这种检测s -亚硝基化蛋白的CyDye开关方法是在分析s -亚硝基化蛋白的生物素开关方法的基础上发展起来的。我们在模型蛋白和细胞水平上分析了NO供体诱导的s -亚硝基化蛋白。我们证明这种CyDye开关方法可以通过SDS-PAGE和质谱检测特定的s -亚硝基化蛋白。结果表明,优化后的CyDye开关法适用于蛋白质翻译后s -亚硝基化的检测。
{"title":"A proteomic approach for the analysis of S-nitrosylated proteins using a fluorescence labeling technique","authors":"Toshihiro Yoshimura, K. Kurogi, Ming-Cheh Liu, M. Suiko, Y. Sakakibara","doi":"10.2198/JELECTROPH.60.5","DOIUrl":"https://doi.org/10.2198/JELECTROPH.60.5","url":null,"abstract":"S-nitrosylation, a post-translational modification of the thiol group of cysteine residues by nitric oxide (NO), has emerged as a new mode of signal transduction and regulation of protein function. It has recently been shown that S-nitrosylation may result in various protein dysfunctions. However, an improved S-nitrosylation analysis method is needed to achieve high sensitivity and quantitative accuracy. We hypothesized that an analysis method using fluorescence dye could detect S-nitrosylated proteins at a higher sensitivity than that of the conventional method. In this study, we developed a procedure for analyzing S-nitrosylated proteins using CyDye (the CyDye switch method). This CyDye switch method for detecting S-nitrosylated proteins was developed based on the biotin-switch method for analyzing S-nitrosylated proteins. We analyzed NO donor-induced S-nitrosylated proteins in a model protein and at the cellular level. We demonstrated that this CyDye switch method could detect specific S-nitrosylated proteins using SDS-PAGE and mass spectrometry. Our results indicate that the optimized CyDye switch method is suitable for the detection of the post-translational S-nitrosylation of proteins.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"36 1","pages":"5-14"},"PeriodicalIF":0.0,"publicationDate":"2016-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73178843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
ModProt: a database for integrating laboratory and literature data about protein post-translational modifications ModProt:一个整合关于蛋白质翻译后修饰的实验室和文献数据的数据库
Pub Date : 2016-01-01 DOI: 10.2198/JELECTROPH.60.1
Y. Kimura, T. Toda, H. Hirano
Protein post-translational modifications (PTMs) play crucial roles in regulation of protein function and cell signaling, and abnormalities in protein PTMs are both causes and consequences of disease. Mass spectrometry (MS) is widely used to analyze protein PTMs. In this study, we developed an original database, ModProt (Post-Translational Modification Map of Proteome), to integrate our laboratory data and literature information regarding PTM sites. To develop the ModProt database, we constructed a web-based laboratory information management system (LIMS). This system allows us to administer the ModProt database and to view PTM site maps and corresponding protein information including amino acid sequences, official gene symbols, UniProt accessions/IDs, chromosome number/ positions, and additional description. The ultimate goal of the ModProt database is to achieve PTM-based diagnosis and personalized medicine through detection of abnormal PTMs by comparing PTM site maps in healthy and disease states using the database.
蛋白质翻译后修饰(PTMs)在蛋白质功能和细胞信号传导调节中起着至关重要的作用,蛋白质PTMs的异常既是疾病的原因也是疾病的后果。质谱法(MS)广泛用于蛋白质PTMs的分析。在这项研究中,我们开发了一个原始数据库ModProt (Post-Translational Modification Map of Proteome),来整合我们关于PTM位点的实验室数据和文献信息。为了开发ModProt数据库,我们构建了一个基于web的实验室信息管理系统(LIMS)。该系统允许我们管理ModProt数据库,并查看PTM位点图和相应的蛋白质信息,包括氨基酸序列、官方基因符号、UniProt加入/ id、染色体数目/位置和其他描述。ModProt数据库的最终目标是通过比较数据库中健康状态和疾病状态下的PTM位点图,发现异常的PTM,从而实现基于PTM的诊断和个性化医疗。
{"title":"ModProt: a database for integrating laboratory and literature data about protein post-translational modifications","authors":"Y. Kimura, T. Toda, H. Hirano","doi":"10.2198/JELECTROPH.60.1","DOIUrl":"https://doi.org/10.2198/JELECTROPH.60.1","url":null,"abstract":"Protein post-translational modifications (PTMs) play crucial roles in regulation of protein function and cell signaling, and abnormalities in protein PTMs are both causes and consequences of disease. Mass spectrometry (MS) is widely used to analyze protein PTMs. In this study, we developed an original database, ModProt (Post-Translational Modification Map of Proteome), to integrate our laboratory data and literature information regarding PTM sites. To develop the ModProt database, we constructed a web-based laboratory information management system (LIMS). This system allows us to administer the ModProt database and to view PTM site maps and corresponding protein information including amino acid sequences, official gene symbols, UniProt accessions/IDs, chromosome number/ positions, and additional description. The ultimate goal of the ModProt database is to achieve PTM-based diagnosis and personalized medicine through detection of abnormal PTMs by comparing PTM site maps in healthy and disease states using the database.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"88 1","pages":"1-4"},"PeriodicalIF":0.0,"publicationDate":"2016-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81388188","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Direct coupling of immobilized metal ion affinity chromatography and capillary isoelectric focusing in a single capillary 固定化金属离子亲和色谱法与毛细管等电聚焦在单个毛细管中的直接耦合
Pub Date : 2015-01-01 DOI: 10.2198/JELECTROPH.59.7
K. Shimura, T. Nagai
A procedure for the direct coupling of affinity chromatography and capillary isoelectric focusing in a single capillary is described. A unified capillary device was made to implement this procedure. The inner surface of a fused-silica capillary was tandemly coated with a chelating polymer, polyiminodiacetate, at the inlet side and with a neutral polymer, polydimethylacrylamide, at the outlet side. After loading a fluorescence-labeled recombinant Fab with a hexahistidine tag, a model sample, the device was rinsed with a high-salt buffer and then with a carrier ampholyte solution to fill the device. The bound Fab was eluted by filling the nickel-chelate column with an anode solution, 100 mM phosphoric acid. A positive voltage was applied at the chelate column side with a pressure at the same side, so as to slightly overwhelm the anodic electroosmosis produced in the acidified chelate column and gradually move the focused protein bands through a stationary fluorescence detector. The mixture of the labeled recombinant Fab at variable concentration and labeled bovine serum albumin at 50 nM was analyzed with the capillary device. A linear relationship between the peak area and the concentration was demonstrated for the Fab at 3.2 pM to 10 nM. The coefficients of variation for the peak area and detection time at 10 nM were 4.3% and 4.4%, respectively. The coupled procedure described here allows total transfer of the specifically adsorbed proteins from the affinity column to the capillary for isoelectric focusing without any compromise in separation efficiency. Removal of excess salts and concentration of dilute samples are also attractive features of the coupled procedure that can provide a new option for the analysis of charge variants of a protein in biological samples.
描述了亲和色谱法和毛细管等电聚焦法在单个毛细管中的直接耦合过程。制作了统一的毛细管装置来实现这一过程。熔融二氧化硅毛细管的内表面在入口侧连续涂覆了螯合聚合物聚亚氨基二乙酸酯,在出口侧涂覆了中性聚合物聚二甲基丙烯酰胺。在用六组氨酸标签(模型样品)装载荧光标记的重组Fab后,用高盐缓冲液冲洗装置,然后用载体两性电解质溶液填充装置。用阳极溶液100mm磷酸填充镍螯合柱洗脱结合的Fab。在螯合柱一侧施加正电压,在同一侧施加压力,使酸化后的螯合柱产生的阳极电渗透压略过,使聚焦蛋白带逐渐通过固定式荧光检测器移动。将标记的重组Fab在变浓度下与标记的牛血清白蛋白在50 nM下混合,用毛细管仪进行分析。在3.2 pM至10 nM时,Fab的峰面积与浓度呈线性关系。10 nM峰面积和检测时间的变异系数分别为4.3%和4.4%。这里描述的耦合过程允许将特异性吸附的蛋白质从亲和柱完全转移到毛细管中进行等电聚焦,而不会影响分离效率。去除多余的盐和稀释样品的浓度也是耦合过程的吸引人的特点,可以为分析生物样品中蛋白质的电荷变异提供新的选择。
{"title":"Direct coupling of immobilized metal ion affinity chromatography and capillary isoelectric focusing in a single capillary","authors":"K. Shimura, T. Nagai","doi":"10.2198/JELECTROPH.59.7","DOIUrl":"https://doi.org/10.2198/JELECTROPH.59.7","url":null,"abstract":"A procedure for the direct coupling of affinity chromatography and capillary isoelectric focusing in a single capillary is described. A unified capillary device was made to implement this procedure. The inner surface of a fused-silica capillary was tandemly coated with a chelating polymer, polyiminodiacetate, at the inlet side and with a neutral polymer, polydimethylacrylamide, at the outlet side. After loading a fluorescence-labeled recombinant Fab with a hexahistidine tag, a model sample, the device was rinsed with a high-salt buffer and then with a carrier ampholyte solution to fill the device. The bound Fab was eluted by filling the nickel-chelate column with an anode solution, 100 mM phosphoric acid. A positive voltage was applied at the chelate column side with a pressure at the same side, so as to slightly overwhelm the anodic electroosmosis produced in the acidified chelate column and gradually move the focused protein bands through a stationary fluorescence detector. The mixture of the labeled recombinant Fab at variable concentration and labeled bovine serum albumin at 50 nM was analyzed with the capillary device. A linear relationship between the peak area and the concentration was demonstrated for the Fab at 3.2 pM to 10 nM. The coefficients of variation for the peak area and detection time at 10 nM were 4.3% and 4.4%, respectively. The coupled procedure described here allows total transfer of the specifically adsorbed proteins from the affinity column to the capillary for isoelectric focusing without any compromise in separation efficiency. Removal of excess salts and concentration of dilute samples are also attractive features of the coupled procedure that can provide a new option for the analysis of charge variants of a protein in biological samples.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"137 1","pages":"7-17"},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76742479","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Interactome analysis reveals molecular mechanisms underlying the association between selenium binding protein 1 expression and the malignant features of tumor cells 相互作用组分析揭示了硒结合蛋白1表达与肿瘤细胞恶性特征相关的分子机制
Pub Date : 2015-01-01 DOI: 10.2198/JELECTROPH.59.1
Takashi Tajima, F. Kito, T. Ohta, K. Shiozawa, A. Kawai, T. Kondo
The potential biological and clinical significance of selenium binding protein 1 (SBP1) has been suggested in various types of cancer. To evaluate the role of SBP1 and reveal the molecular basis for its function, we examined the SBP1 protein complex. A gene transfection assay revealed that overexpression of SBP1 promoted proliferation and migration of A549 lung adenocarcinoma cells. Halo-tag-based affinity purification coupled with liquid chromatography-tandem mass spectrometry identified 23 components of the SBP1 protein complex. The functional classification of these 23 proteins suggests that the SBP1 complex participates in critical biological events including cell structure, protein translation, stress response, chaperone, and apoptosis. Moreover, the SBP1 complex includes several proteins that are aberrantly expressed in cancers. These finding indicate that SBP1 may function coordinately with these multiple proteins to facilitate cancer progression. A comprehensive study of the multiple proteins associated with SPB1 together with an examination of individual proteins will be required to elucidate the roles of aberrant SBP1 regulation in cancer progression.
硒结合蛋白1 (SBP1)的潜在生物学和临床意义已被提出在各种类型的癌症。为了评估SBP1的作用并揭示其功能的分子基础,我们检测了SBP1蛋白复合物。基因转染实验显示,SBP1的过表达促进了A549肺腺癌细胞的增殖和迁移。基于halo标签的亲和纯化结合液相色谱-串联质谱法鉴定了SBP1蛋白复合物的23个组分。这23种蛋白的功能分类表明,SBP1复合物参与了包括细胞结构、蛋白质翻译、应激反应、伴侣和凋亡在内的关键生物学事件。此外,SBP1复合体包括几种在癌症中异常表达的蛋白质。这些发现表明SBP1可能与这些多种蛋白协同作用,促进癌症进展。需要对与SPB1相关的多种蛋白进行全面研究,并对单个蛋白进行检查,以阐明SBP1异常调节在癌症进展中的作用。
{"title":"Interactome analysis reveals molecular mechanisms underlying the association between selenium binding protein 1 expression and the malignant features of tumor cells","authors":"Takashi Tajima, F. Kito, T. Ohta, K. Shiozawa, A. Kawai, T. Kondo","doi":"10.2198/JELECTROPH.59.1","DOIUrl":"https://doi.org/10.2198/JELECTROPH.59.1","url":null,"abstract":"The potential biological and clinical significance of selenium binding protein 1 (SBP1) has been suggested in various types of cancer. To evaluate the role of SBP1 and reveal the molecular basis for its function, we examined the SBP1 protein complex. A gene transfection assay revealed that overexpression of SBP1 promoted proliferation and migration of A549 lung adenocarcinoma cells. Halo-tag-based affinity purification coupled with liquid chromatography-tandem mass spectrometry identified 23 components of the SBP1 protein complex. The functional classification of these 23 proteins suggests that the SBP1 complex participates in critical biological events including cell structure, protein translation, stress response, chaperone, and apoptosis. Moreover, the SBP1 complex includes several proteins that are aberrantly expressed in cancers. These finding indicate that SBP1 may function coordinately with these multiple proteins to facilitate cancer progression. A comprehensive study of the multiple proteins associated with SPB1 together with an examination of individual proteins will be required to elucidate the roles of aberrant SBP1 regulation in cancer progression.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"11 1","pages":"1-6"},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82086173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of two phosphorylated species of β-catenin involved in the ubiquitin-proteasome pathway by using two-dimensional Phos-tag affinity electrophoresis 利用二维phos标签亲和电泳技术鉴定参与泛素-蛋白酶体途径的两种β-catenin磷酸化物种
Pub Date : 2014-01-01 DOI: 10.2198/JELECTROPH.58.1
Emiko Kinoshita-Kikuta, E. Kinoshita, T. Koike
SUMMARY We recently reported a neutral-pH gel system buffered with 2-[bis(2-hydroxyethyl)amino]-2-(hydroxyme-thyl)propane-1,3-diol hydrochloride (Bis-Tris–HCl) for use in Zn 2+ –Phos-tag sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) for advanced profiling of protein phosphorylation. In the current study, we extended the utility of Zn 2+ –Phos-tag SDS-PAGE with the Bis-Tris–HCl buffer system to a detailed analysis of phosphorylated β -catenin, which is closely involved in the ubiquitin-proteasome pathway. The Phos-tag-based approach, followed by Western blotting with an anti- β -catenin antibody, allowed us to assign nine phosphorylated species of β -catenin produced in complicated signaling pathways of cultured HEK293 and SW480 cells. Two-dimensional image coupling with normal Laemmli’s SDS-PAGE as the first dimension gave more detailed information, not only on the phosphorylation of β -catenin, but also on the phosphorylation-dependent polyubiquitination by visualizing multiple ubiquitinated forms derived from two phosphorylated species of β -catenin in lactacystin-treated HEK293 cells. We identified two distinct phosphorylated species of β -catenin that are responsible for polyubiquitination. The first contains phosphorylated residues at S33, S37, T41, and S45, and the second contains these sites and an additional phosphorylated residue at S675. The profiling of double post-translational modifications of β -catenin is consistent with the widely accepted phosphorylation-dependent ubiquitination model in the absence of a Wnt signal.
我们最近报道了一种用2-[双(2-羟乙基)氨基]-2-(羟乙基)丙烷-1,3-二醇盐化物(bis - tris - hcl)缓冲的中性ph凝胶体系,用于zn2 + - phos -标签十二烷基硫酸钠-聚丙烯酰胺凝胶电泳(SDS-PAGE),用于蛋白质磷酸化的高级分析。在目前的研究中,我们将zn2 + -Phos-tag SDS-PAGE与Bis-Tris-HCl缓冲系统的应用扩展到详细分析磷酸化的β -catenin,这与泛素-蛋白酶体途径密切相关。基于phos标签的方法,随后用抗β -catenin抗体进行Western blotting,使我们能够确定培养的HEK293和SW480细胞复杂信号通路中产生的9种磷酸化的β -catenin。二维图像耦合正常Laemmli’s SDS-PAGE作为第一个维度,不仅提供了关于β -catenin磷酸化的更详细的信息,而且通过可视化乳糖系统蛋白处理的HEK293细胞中两种磷酸化的β -catenin的多种泛素化形式,还提供了磷酸化依赖性的多泛素化信息。我们确定了两种不同的β -连环蛋白磷酸化物种,它们负责多泛素化。第一个包含S33、S37、T41和S45位点的磷酸化残基,第二个包含这些位点和S675位点的磷酸化残基。在缺乏Wnt信号的情况下,β -catenin的双重翻译后修饰谱与广泛接受的磷酸化依赖泛素化模型一致。
{"title":"Identification of two phosphorylated species of β-catenin involved in the ubiquitin-proteasome pathway by using two-dimensional Phos-tag affinity electrophoresis","authors":"Emiko Kinoshita-Kikuta, E. Kinoshita, T. Koike","doi":"10.2198/JELECTROPH.58.1","DOIUrl":"https://doi.org/10.2198/JELECTROPH.58.1","url":null,"abstract":"SUMMARY We recently reported a neutral-pH gel system buffered with 2-[bis(2-hydroxyethyl)amino]-2-(hydroxyme-thyl)propane-1,3-diol hydrochloride (Bis-Tris–HCl) for use in Zn 2+ –Phos-tag sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) for advanced profiling of protein phosphorylation. In the current study, we extended the utility of Zn 2+ –Phos-tag SDS-PAGE with the Bis-Tris–HCl buffer system to a detailed analysis of phosphorylated β -catenin, which is closely involved in the ubiquitin-proteasome pathway. The Phos-tag-based approach, followed by Western blotting with an anti- β -catenin antibody, allowed us to assign nine phosphorylated species of β -catenin produced in complicated signaling pathways of cultured HEK293 and SW480 cells. Two-dimensional image coupling with normal Laemmli’s SDS-PAGE as the first dimension gave more detailed information, not only on the phosphorylation of β -catenin, but also on the phosphorylation-dependent polyubiquitination by visualizing multiple ubiquitinated forms derived from two phosphorylated species of β -catenin in lactacystin-treated HEK293 cells. We identified two distinct phosphorylated species of β -catenin that are responsible for polyubiquitination. The first contains phosphorylated residues at S33, S37, T41, and S45, and the second contains these sites and an additional phosphorylated residue at S675. The profiling of double post-translational modifications of β -catenin is consistent with the widely accepted phosphorylation-dependent ubiquitination model in the absence of a Wnt signal.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"96 1","pages":"1-4"},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83358515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Establishment and application of a high-quality comparative analysis strategy for the discovery and small-scale validation of low-abundance biomarker peptides in serum based on an optimized novel peptide extraction method 基于优化的新型多肽提取方法,建立高质量的血清低丰度生物标记肽发现和小规模验证对比分析策略并应用
Pub Date : 2013-01-01 DOI: 10.2198/JELECTROPH.57.1
Tatsuya Saito, Y. Kawashima, Satoru Minamida, Kazumasa Matsumoto, Keita Araki, T. Matsui, M. Satoh, F. Nomura, M. Iwamura, T. Maeda, S. Baba, Y. Kodera
1 Laboratory of Biomolecular Dynamics, Department of Physics, Kitasato University School of Science 2 Center for Disease Proteomics, Kitasato University School of Science 3 Department of Urology, Kitasato University School of Medicine 4 Division of Natural Products Chemistry, Department of Medicinal Resources, Institute of Natural Medicine, University of Toyama 5 Clinical Proteomics Research Center, Chiba University Hospital 6 Department of Molecular Diagnosis (F8) Graduate School of Medicine, Chiba University
1北里大学理学院物理系生物分子动力学实验室2北里大学理学院疾病蛋白质组学研究中心3北里大学医学院泌尿科4富山大学天然药物研究所天然产物化学部5千叶大学附属医院临床蛋白质组学研究中心6医学研究生院分子诊断部(F8),千叶大学
{"title":"Establishment and application of a high-quality comparative analysis strategy for the discovery and small-scale validation of low-abundance biomarker peptides in serum based on an optimized novel peptide extraction method","authors":"Tatsuya Saito, Y. Kawashima, Satoru Minamida, Kazumasa Matsumoto, Keita Araki, T. Matsui, M. Satoh, F. Nomura, M. Iwamura, T. Maeda, S. Baba, Y. Kodera","doi":"10.2198/JELECTROPH.57.1","DOIUrl":"https://doi.org/10.2198/JELECTROPH.57.1","url":null,"abstract":"1 Laboratory of Biomolecular Dynamics, Department of Physics, Kitasato University School of Science 2 Center for Disease Proteomics, Kitasato University School of Science 3 Department of Urology, Kitasato University School of Medicine 4 Division of Natural Products Chemistry, Department of Medicinal Resources, Institute of Natural Medicine, University of Toyama 5 Clinical Proteomics Research Center, Chiba University Hospital 6 Department of Molecular Diagnosis (F8) Graduate School of Medicine, Chiba University","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"33 1","pages":"1-9"},"PeriodicalIF":0.0,"publicationDate":"2013-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74795568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Analysis of glucose-protein interaction using p-hydroxyacetophenone-Sepharose affinity resin —Glucose decreases alcohol dehydrogenase activity in vitro— 对羟基苯乙酮- sepharose亲和树脂对葡萄糖-蛋白相互作用的分析-葡萄糖降低体外乙醇脱氢酶活性
Pub Date : 2012-01-01 DOI: 10.2198/JELECTROPH.56.19
M. Negoro, Mina Sawano, Hiromi Sawamura, S. Ebara, Toshiaki Watanabe
{"title":"Analysis of glucose-protein interaction using p-hydroxyacetophenone-Sepharose affinity resin —Glucose decreases alcohol dehydrogenase activity in vitro—","authors":"M. Negoro, Mina Sawano, Hiromi Sawamura, S. Ebara, Toshiaki Watanabe","doi":"10.2198/JELECTROPH.56.19","DOIUrl":"https://doi.org/10.2198/JELECTROPH.56.19","url":null,"abstract":"","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"6 1","pages":"19-24"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76087821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Isoelectric focusing of urinary transferrin for detection of early stages of diabetic nephropathy 尿转铁蛋白等电聚焦检测早期糖尿病肾病
Pub Date : 2012-01-01 DOI: 10.2198/JELECTROPH.56.1
Nobue Sakai, R. Kubota, K. Shiba, Y. Hattori, S. Iijima
Urinary albumin (ALB) and transferrin (TF) are useful markers for impaired renal function. Compared to ALB, TF is more readily excreted into urine from an early stage of renal failure because of its smaller number of negative charges. However, few evidence of a change in isoelectric point (pI) value of urinary TF in nephropathy patients has been reported. We analyzed pI values of urinary TF by an isoelectric focusing, and compared the results in normal subjects with those in diabetic patients at various stages of nephropathy. Urine samples of diabetics were randomly collected from 24 patients and 7 healthy volunteers. An apotransferrin with a high pI value was detected in samples of healthy subjects. However, the pI value of TF bands derived from diabetic patients shifted to the lower side, and the more nephropathy stages progressed, greater change of pI value was detected. In addition, TF with low iron-binding capacity was detected in some samples from diabetics. These results suggest that determination of the pI value of urinary TF in diabetic patients may be useful diagnostic markers for an early detection of diabetic nephropathy.
尿白蛋白(ALB)和转铁蛋白(TF)是肾功能受损的有用标志物。与ALB相比,在肾功能衰竭的早期,TF更容易排泄到尿液中,因为它的负电荷数量较少。然而,很少有证据表明肾病患者尿TF的等电点(pI)值发生了变化。我们通过等电聚焦分析尿TF的pI值,并将正常受试者的结果与不同肾病阶段的糖尿病患者的结果进行比较。随机抽取24例糖尿病患者和7例健康志愿者的尿样。在健康人群中检测到高pI值的转铁蛋白。而糖尿病患者TF波段pI值偏下,且肾病分期越长,pI值变化越大。此外,在一些糖尿病患者的样品中检测到低铁结合能力的TF。这些结果提示,测定糖尿病患者尿TF的pI值可能是早期发现糖尿病肾病的有用诊断指标。
{"title":"Isoelectric focusing of urinary transferrin for detection of early stages of diabetic nephropathy","authors":"Nobue Sakai, R. Kubota, K. Shiba, Y. Hattori, S. Iijima","doi":"10.2198/JELECTROPH.56.1","DOIUrl":"https://doi.org/10.2198/JELECTROPH.56.1","url":null,"abstract":"Urinary albumin (ALB) and transferrin (TF) are useful markers for impaired renal function. Compared to ALB, TF is more readily excreted into urine from an early stage of renal failure because of its smaller number of negative charges. However, few evidence of a change in isoelectric point (pI) value of urinary TF in nephropathy patients has been reported. We analyzed pI values of urinary TF by an isoelectric focusing, and compared the results in normal subjects with those in diabetic patients at various stages of nephropathy. Urine samples of diabetics were randomly collected from 24 patients and 7 healthy volunteers. An apotransferrin with a high pI value was detected in samples of healthy subjects. However, the pI value of TF bands derived from diabetic patients shifted to the lower side, and the more nephropathy stages progressed, greater change of pI value was detected. In addition, TF with low iron-binding capacity was detected in some samples from diabetics. These results suggest that determination of the pI value of urinary TF in diabetic patients may be useful diagnostic markers for an early detection of diabetic nephropathy.","PeriodicalId":15059,"journal":{"name":"Journal of capillary electrophoresis","volume":"37 1","pages":"1-6"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74045227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of capillary electrophoresis
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1