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Medium- and long-chain triglyceride propofol activates PI3K/AKT pathway and inhibits non-alcoholic fatty liver disease by inhibiting lipid accumulation. 中长链甘油三酯异丙酚激活PI3K/AKT通路,通过抑制脂质积累抑制非酒精性脂肪肝。
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2024-02-01 Epub Date: 2023-11-30 DOI: 10.1007/s10863-023-09997-0
Hui Liu, Mingshuo Hao, Wen Liu, Haiyan Chen, Changlong Han, Yun Shao, Liyuan Wang

Non-alcoholic fatty liver disease (NAFLD) is the most common liver disease. The mechanism by which medium- and long-chain triglyceride (MCT/LCT) propofol plays a role in promoting NAFLD remains unclear. In this study, we investigated the effect of MCT/LCT propofol on NAFLD progression and its mechanism of action. In Huh-7 and HepG3 cells induced by free fatty acids (FFA), propofol downregulated the expression levels of TG and lipid metabolism-related proteins by promoting the activation of the PI3K/AKT pathway and suppressing FFA-induced lipid metabolic disorders. In a high-fat diet (HFD) -induced NAFLD mouse model, we demonstrated that propofol significantly inhibited liver steatosis, inflammatory cell infiltration, and fibrosis. In conclusion, our results suggest that MCT/LCT propofol reduces liver lipid accumulation by activating the PI3K/AKT pathway and further suppressing the NAFLD process.

非酒精性脂肪性肝病(NAFLD)是最常见的肝病。中长链甘油三酯(MCT/LCT)异丙酚促进NAFLD的机制尚不清楚。在本研究中,我们研究了MCT/LCT异丙酚对NAFLD进展的影响及其作用机制。在游离脂肪酸(FFA)诱导的hh -7和HepG3细胞中,异丙酚通过激活PI3K/AKT通路,抑制FFA诱导的脂质代谢紊乱,从而下调TG和脂质代谢相关蛋白的表达水平。在高脂肪饮食(HFD)诱导的NAFLD小鼠模型中,我们证明异丙酚显著抑制肝脏脂肪变性、炎症细胞浸润和纤维化。总之,我们的研究结果表明,MCT/LCT异丙酚通过激活PI3K/AKT通路并进一步抑制NAFLD过程来减少肝脏脂质积累。
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引用次数: 0
Chondroprotective effects of bone marrow mesenchymal stem cell-derived exosomes in osteoarthritis. 骨关节炎中骨髓间充质干细胞衍生外泌体的软骨保护作用。
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2024-02-01 Epub Date: 2023-11-28 DOI: 10.1007/s10863-023-09991-6
Shi Cheng, Xiangning Xu, Ren Wang, Weijie Chen, Kunhan Qin, Jinglong Yan

Chondrocyte ferroptosis constitutes a major cause of the development of osteoarthritis (OA). Bone marrow mesenchymal stem cell-derived exosomes (BMSC-Exos) have a protective role against ferroptosis in various diseases. Hence, we aimed to determine whether BMSC-Exos alleviated chondrocyte ferroptosis and its effect on OA, and to dissect out the possible mechanisms. An OA rat chondrocyte model was established by interleukin-1β (IL-1β) exposure, and treated with BMSC-Exos/ferroptosis inhibitor Ferrostatin-1. Cell viability/ferroptosis-related index levels [reactive oxygen species (ROS)/malondialdehyde (MDA)/glutathione (GSH)]/cell death/ACSL4 mRNA and protein levels and METTL3 levels were assessed by MTT/kits/immunohistochemical method and TUNEL staining/RT-qPCR and Western blot. METTL3/ACSL4 were overexpressed in rat chondrocytes to evaluate their role in BMSC-Exo-produced repression on chondrocyte ferroptosis. Bioinformatics website predicted the presence of m6A modification sites on ACSL4 mRNA, with the m6A level enriched on it assessed by MeRIP/RT-qPCR. ACSL4 mRNA stability was detected by actinomycin D assay. A surgical destabilized medial meniscus rat OA model was also established, followed by injection with BMSC-Exos to verify their function. IL-1β stimulation in rat chondrocytes inhibited cell viability, elevated Fe2+/ROS/MDA levels, declined GSH levels and increased TUNEL positive cell number and ACSL4 level, which were neutralized by BMSC-Exos. BMSC-Exos limited chondrocyte ferroptosis by down-regulating METTL3, with the effect abrogated by METTL3 overexpression. METTL3 regulated the m6A modification of ACSL4 mRNA, increasing ACSL4 mRNA stability and ACSL4 expression. BMSC-Exos reduced chondrocyte ferroptosis and prevented OA progression via disruption of the METTL3-m6A-ACSL4 axis. BMSC-Exos might exert a chondroprotective effect by attenuating chondrocyte ferroptosis and alleviate OA progression.

软骨细胞铁下垂是骨关节炎(OA)发展的主要原因。骨髓间充质干细胞来源的外泌体(BMSC-Exos)在多种疾病中对铁凋亡具有保护作用。因此,我们旨在确定BMSC-Exos是否减轻软骨细胞铁下垂及其对OA的影响,并分析可能的机制。采用白细胞介素-1β (IL-1β)暴露法建立OA大鼠软骨细胞模型,并用BMSC-Exos/ferroptosis抑制剂Ferrostatin-1处理。采用MTT/试剂盒/免疫组化、TUNEL染色/RT-qPCR和Western blot检测细胞活力/凋亡相关指数水平[活性氧(ROS)/丙二醛(MDA)/谷胱甘肽(GSH)]/细胞死亡/ACSL4 mRNA和蛋白水平及METTL3水平。METTL3/ACSL4在大鼠软骨细胞中过表达,以评估其在bmsc - exo产生的软骨细胞铁下垂抑制中的作用。生物信息学网站预测ACSL4 mRNA上存在m6A修饰位点,并通过MeRIP/RT-qPCR检测其上m6A的富集水平。放线菌素D法检测ACSL4 mRNA的稳定性。建立手术不稳定大鼠内侧半月板OA模型,然后注射BMSC-Exos来验证其功能。IL-1β刺激大鼠软骨细胞抑制细胞活力,提高Fe2+/ROS/MDA水平,降低GSH水平,增加TUNEL阳性细胞数量和ACSL4水平,这些作用被BMSC-Exos中和。BMSC-Exos通过下调METTL3抑制软骨细胞铁下垂,而过表达METTL3则消除了这一作用。METTL3调控ACSL4 mRNA的m6A修饰,提高ACSL4 mRNA的稳定性和ACSL4的表达。BMSC-Exos通过破坏METTL3-m6A-ACSL4轴减少软骨细胞铁下垂并阻止OA进展。BMSC-Exos可能通过减轻软骨细胞铁下垂和减缓OA进展而发挥软骨保护作用。
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引用次数: 0
Circ_0001944 depletion inhibits glycolysis and esophageal cancer progression by binding to miR-338-5p to reduce PDK1 expression. Circ_0001944缺失通过结合miR-338-5p降低PDK1表达抑制糖酵解和食管癌进展。
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2024-02-01 Epub Date: 2023-11-24 DOI: 10.1007/s10863-023-09988-1
Jianjun Wang, Wenjian Yao, Jiwei Li, Quan Zhang, Li Wei

Circular RNA (circRNA) plays multiple roles in the development of esophageal cancer (EC). Herein, we investigate the function of circ_0001944 in EC progression and the related mechanism. Expression of circ_0001944, microRNA-338-5p (miR-338-5p), pyruvate dehydrogenase kinase 1 (PDK1), E-cadherin and N-cadherin was analyzed by quantitative real-time polymerase chain reaction, Western blotting or immunohistochemistry assay. Cell viability, proliferation, apoptosis, invasion and migration were investigated by cell counting kit-8 (CCK-8), 5-Ethynyl-2'-deoxyuridine (EdU), flow cytometry, transwell invasion and wound-healing assays, respectively. Glucose consumption was detected by Glucose Assay Kit. Lactate production was analyzed by Lactate Assay Kit. ATP/ADP ratio was determined by ADP/ATP ratio Assay Kit. The associations among circ_0001944, miR-338-5p and PDK1 were identified by dual-luciferase reporter and RNA pull-down assays. Xenograft mouse model assay was used to explore the role of circ_0001944 on tumor tumorigenesis in vivo. Circ_0001944 and PDK1 expression were significantly upregulated, while miR-338-5p was downregulated in EC tissues and cells in contrast with normal esophageal tissues and cells. Circ_0001944 knockdown inhibited EC cell proliferation, invasion, migration and glycolysis but induced apoptosis. Meanwhile, circ_0001944 depletion suppressed tumor tumorigenesis in vivo. Mechanistically, circ_0001944 bound to miR-338-5p, and miR-338-5p targeted PDK1. In addition, miR-338-5p inhibitors attenuated circ_0001944 depletion-induced effects in EC cells. The regulation of miR-338-5p on EC progression involved the downregulation of PDK1. Further, circ_0001944 controlled PDK1 expression through miR-338-5p. Circ_0001944 knockdown inhibited EC development and glycolysis by regulating the miR-338-5p/PDK1 pathway, providing a promising target for EC therapy.

环状RNA (circRNA)在食管癌(EC)的发生发展中发挥着多种作用。本文研究circ_0001944在EC进程中的作用及其机制。采用实时定量聚合酶链反应、Western blotting或免疫组化检测circ_0001944、microRNA-338-5p (miR-338-5p)、丙酮酸脱氢酶激酶1 (PDK1)、E-cadherin和N-cadherin的表达。分别采用细胞计数试剂盒-8 (CCK-8)、5-乙基-2′-脱氧尿苷(EdU)、流式细胞术、跨井侵袭和创面愈合试验研究细胞活力、增殖、凋亡、侵袭和迁移。葡萄糖测定试剂盒检测葡萄糖消耗。乳酸含量测定试剂盒测定。采用ADP/ATP比值测定试剂盒测定ATP/ADP比值。circ_0001944、miR-338-5p和PDK1之间的关联是通过双荧光素酶报告基因和RNA下拉试验确定的。采用异种移植小鼠模型实验探讨circ_0001944在体内肿瘤发生中的作用。Circ_0001944和PDK1的表达明显上调,而miR-338-5p在EC组织和细胞中与正常食管组织和细胞相比表达下调。Circ_0001944的敲除抑制EC细胞的增殖、侵袭、迁移和糖酵解,但诱导细胞凋亡。同时,circ_0001944的消耗抑制了体内肿瘤的发生。在机制上,circ_0001944与miR-338-5p结合,miR-338-5p靶向PDK1。此外,miR-338-5p抑制剂减弱了EC细胞中circ_0001944消耗诱导的效应。miR-338-5p对EC进展的调控涉及PDK1的下调。此外,circ_0001944通过miR-338-5p控制PDK1的表达。Circ_0001944敲低通过调节miR-338-5p/PDK1途径抑制EC的发展和糖酵解,为EC治疗提供了一个有希望的靶点。
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引用次数: 0
Human milk exosome-derived circDNAJB6 improves bronchopulmonary dysplasia model by promoting DNAJB6 gene transcription 人乳外泌体源性circDNAJB6通过促进DNAJB6基因转录改善支气管肺发育不良模型
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2024-01-20 DOI: 10.1007/s10863-024-10002-5
Yubai Li, Boshi Yu, Huimin Li, Weiwei Hou, Jing Yin, Yahui Zhou, Zhangbin Yu

To verify the protective effect of circDNAJB6 on Bronchopulmonary dysplasia (BPD) cell and animal models and to explore the possible mechanism of its protective effect. The function of circDNAJB6 was investigated at the cell and animal levels. Nuclear and Cytoplasmic RNA extraction kits and fluorescence in situ hybridization (FISH) were used to explore the distribution of circDNAJB6 in cells, and the potential mechanism of circDNAJB6 was verified by q-PCR, luciferase assays and rescue experiments.CircDNAJB6 is abundant in breast milk exosomes. Overexpression of circDNAJB6 can ameliorate damage in BPD models caused by hyperoxia exposure in vivo and in vitro. Mechanistically, circDNAJB6 can target the downstream DNAJB6 gene and promote the transcription of DNAJB6, exertive a protective effect on the experimental BPD model. Our results showed that circDNAJB6 alleviated damage and inhibited the proliferation of alveolar epithelial cells in the BPD model by promoting transcription of parent gene DNAJB6. Human milk exosome-derived circDNAJB6 provides new directions for preventing and treating BPD.

验证 circDNAJB6 对支气管肺发育不良(BPD)细胞和动物模型的保护作用,并探索其保护作用的可能机制。从细胞和动物水平研究 circDNAJB6 的功能。利用核和胞质RNA提取试剂盒和荧光原位杂交(FISH)技术探讨了circDNAJB6在细胞中的分布,并通过q-PCR、荧光素酶检测和拯救实验验证了circDNAJB6的潜在机制。circDNAJB6在母乳外泌体中含量丰富。过表达circDNAJB6可改善高氧暴露在体内和体外造成的BPD模型损伤。从机理上讲,circDNAJB6能靶向下游DNAJB6基因,促进DNAJB6的转录,对实验性BPD模型产生保护作用。我们的研究结果表明,circDNAJB6通过促进母基因DNAJB6的转录,减轻了BPD模型中肺泡上皮细胞的损伤并抑制了其增殖。人乳外泌体衍生的circDNAJB6为预防和治疗BPD提供了新的方向。
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引用次数: 0
Knockdown of circSlc8a1 inhibited the ferroptosis in the angiotensin II treated H9c2 cells via miR-673-5p/TFRC axis 通过 miR-673-5p/TFRC 轴敲除 circSlc8a1 可抑制血管紧张素 II 处理的 H9c2 细胞的铁卟啉沉积作用
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2023-12-30 DOI: 10.1007/s10863-023-10000-z
Kaidi Wu, Jiawei Du

Background

This study aimed to investigate the role of circSlc8a1 in cardiac hypertrophy (CH), a pathological change in various cardiovascular diseases.

Methods

An in vitro CH model was established using angiotensin II (AngII) treated H9c2 cells, followed by western blotting and RT-qPCR for detecting relative expressions. Cell viability and proliferation were analyzed using CCK-8 and EdU assays, while lactate dehydrogenase (LDH), reactive oxygen species (ROS), glutathione (GSH), and iron levels were determined using corresponding kits. Moreover, dual-luciferase reporter and RNA pull-down assays were performed to demonstrate whether miR-673-5p is bound to circSlc8a1 or transferrin receptor (TFRC).

Results

The results indicated that the expressions of circSlc8a1 and TFRC were increased, while miR-673-5p was decreased in the AngII treated H9c2 cells. The ferroptosis inhibitor treatment decreased the atrial natriuretic peptide (ANP), brain natriuretic peptide (BNP), and β-major histocompatibility complex (β-MHC) protein expressions, and circSlc8a1 expressions. Knocking down of circSlc8a1 inhibited promoted the cell viability and proliferation, increased the GSH content, glutathione peroxidase 4, and solute carrier family 7 member 11 protein expressions, and decreased the LDH, ROS, iron levels, and RAS protein expressions. The MiR-673-5p inhibitor antagonized the role of si-circSlc8a1, and the over-expressed TFRC reversed the miR-673-5p mimicking effects in AngII treated H9c2 cells.

Conclusion

CircSlc8a1 promoted the ferroptosis in CH via regulating the miR-673-5p/TFRC axis.

背景本研究旨在探讨circSlc8a1在心肌肥厚(CH)中的作用,心肌肥厚是多种心血管疾病的一种病理变化。方法使用血管紧张素II(AngII)处理的H9c2细胞建立体外CH模型,然后进行Western印迹和RT-qPCR检测相对表达。细胞活力和增殖采用 CCK-8 和 EdU 检测法进行分析,乳酸脱氢酶(LDH)、活性氧(ROS)、谷胱甘肽(GSH)和铁水平则采用相应的试剂盒进行测定。结果表明,在 AngII 处理的 H9c2 细胞中,circSlc8a1 和 TFRC 的表达量增加,而 miR-673-5p 的表达量减少。铁变态反应抑制剂处理降低了心房利钠肽(ANP)、脑利钠肽(BNP)、β-主要组织相容性复合体(β-MHC)蛋白的表达和circSlc8a1的表达。敲除 circSlc8a1 可抑制细胞活力和增殖,增加 GSH 含量、谷胱甘肽过氧化物酶 4 和溶质运载家族 7 成员 11 蛋白表达,降低 LDH、ROS、铁水平和 RAS 蛋白表达。MiR-673-5p 抑制剂拮抗了 si-circSlc8a1 的作用,过表达的 TFRC 逆转了 AngII 处理的 H9c2 细胞的 miR-673-5p 模拟效应。
{"title":"Knockdown of circSlc8a1 inhibited the ferroptosis in the angiotensin II treated H9c2 cells via miR-673-5p/TFRC axis","authors":"Kaidi Wu, Jiawei Du","doi":"10.1007/s10863-023-10000-z","DOIUrl":"https://doi.org/10.1007/s10863-023-10000-z","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Background</h3><p>This study aimed to investigate the role of circSlc8a1 in cardiac hypertrophy (CH), a pathological change in various cardiovascular diseases.</p><h3 data-test=\"abstract-sub-heading\">Methods</h3><p>An in vitro CH model was established using angiotensin II (AngII) treated H9c2 cells, followed by western blotting and RT-qPCR for detecting relative expressions. Cell viability and proliferation were analyzed using CCK-8 and EdU assays, while lactate dehydrogenase (LDH), reactive oxygen species (ROS), glutathione (GSH), and iron levels were determined using corresponding kits. Moreover, dual-luciferase reporter and RNA pull-down assays were performed to demonstrate whether miR-673-5p is bound to circSlc8a1 or transferrin receptor (TFRC).</p><h3 data-test=\"abstract-sub-heading\">Results</h3><p>The results indicated that the expressions of circSlc8a1 and TFRC were increased, while miR-673-5p was decreased in the AngII treated H9c2 cells. The ferroptosis inhibitor treatment decreased the atrial natriuretic peptide (ANP), brain natriuretic peptide (BNP), and β-major histocompatibility complex (β-MHC) protein expressions, and circSlc8a1 expressions. Knocking down of circSlc8a1 inhibited promoted the cell viability and proliferation, increased the GSH content, glutathione peroxidase 4, and solute carrier family 7 member 11 protein expressions, and decreased the LDH, ROS, iron levels, and RAS protein expressions. The MiR-673-5p inhibitor antagonized the role of si-circSlc8a1, and the over-expressed TFRC reversed the miR-673-5p mimicking effects in AngII treated H9c2 cells.</p><h3 data-test=\"abstract-sub-heading\">Conclusion</h3><p>CircSlc8a1 promoted the ferroptosis in CH via regulating the miR-673-5p/TFRC axis.</p>","PeriodicalId":15080,"journal":{"name":"Journal of Bioenergetics and Biomembranes","volume":"216 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2023-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139072408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Progesterone improved the behavior of PC12 cells under OGD/R by reducing FABP5 expression and inhibiting TLR4/NF-κB signaling pathway 孕酮通过减少 FABP5 的表达和抑制 TLR4/NF-κB 信号通路,改善 PC12 细胞在 OGD/R 下的行为
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2023-12-18 DOI: 10.1007/s10863-023-09998-z
Chunlin Li, Bowen Li, Linglong Qu, Ruichang Song, Hui Liu, Shanshan Su

Herein, PC12 cells were applied to detect the impact of progesterone under oxygen glucose deprivation/reperfusion (OGD/R) stimulation. The cell proliferation of PC12 cells was evaluated by cell counting kit-8 assay, and the concentrations of MDA, ROS and SOD were examined by their corresponding Enzyme Linked Immunosorbent Assay kits. The invasion and migration properties of PC12 cells were evaluated by transwell and wound healing assays, respectively. The expression patterns of related genes were evaluated by western blot and qPCR. Under OGD/R stimulation, progesterone treatment could elevate the viability of PC12 cells, reduce the levels of MDA and ROS, and elevate the concentration of SOD. Moreover, progesterone treatment could strengthen the invasion and migration abilities of PC12 cells under OGD/R condition, as well as decrease the apoptosis and inflammation. FABP5 expression was significantly increased in PC12 cells under OGD/R stimulation, which was reversed after progesterone stimulation. Under OGD/R stimulation, the protective effects of progesterone on PC12 cells were strengthened after si-FABP5 treatment. The protein levels of TLR4, p-P65 NF-κB, and P65 NF-κB in OGD/R-induced PC12 cells were increased, which were inhibited after progesterone treatment. Progesterone exerted protective effects on PC12 cells by targeting FABP5 under OGD/R stimulation.

本文应用PC12细胞检测黄体酮在氧糖剥夺/再灌注(OGD/R)刺激下的影响。PC12 细胞的细胞增殖由细胞计数试剂盒-8 评估,MDA、ROS 和 SOD 的浓度由相应的酶联免疫吸附试剂盒检测。PC12 细胞的侵袭和迁移特性分别通过跨孔试验和伤口愈合试验进行了评估。通过 Western 印迹和 qPCR 评估了相关基因的表达模式。在 OGD/R 刺激下,黄体酮处理可提高 PC12 细胞的存活率,降低 MDA 和 ROS 的水平,并提高 SOD 的浓度。此外,黄体酮还能增强 PC12 细胞在 OGD/R 条件下的侵袭和迁移能力,减少细胞凋亡和炎症反应。PC12细胞在OGD/R刺激下,FABP5的表达明显增加,而黄体酮刺激后,FABP5的表达被逆转。在OGD/R刺激下,黄体酮对PC12细胞的保护作用在si-FABP5处理后得到加强。OGD/R-诱导的PC12细胞中TLR4、p-P65 NF-κB和P65 NF-κB的蛋白水平升高,黄体酮处理后这些蛋白水平被抑制。在OGD/R刺激下,孕酮通过靶向FABP5对PC12细胞产生保护作用。
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引用次数: 0
Identification of natural antimicrobial peptides mimetic to inhibit Ca2+ influx DDX3X activity for blocking dengue viral infectivity 鉴定抑制 Ca2+ 流入 DDX3X 活性的天然抗菌肽模拟物,以阻断登革热病毒的感染性
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2023-12-14 DOI: 10.1007/s10863-023-09996-1
Amer H. Asseri, Md Rashedul Islam, Reem M. Alghamdi, Hisham N. Altayb

Viruses are microscopic biological entities that can quickly invade and multiply in a living organism. Each year, over 36,000 people die and nearly 400 million are infected with the dengue virus (DENV). Despite dengue being an endemic disease, no targeted and effective antiviral peptide resource is available against the dengue species. Antiviral peptides (AVPs) have shown tremendous ability to fight against different viruses. Accelerating antiviral drug discovery is crucial, particularly for RNA viruses. DDX3X, a vital cell component, supports viral translation and interacts with TRPV4, regulating viral RNA metabolism and infectivity. Its diverse signaling pathway makes it a potential therapeutic target. Our study focuses on inhibiting viral RNA translation by blocking the activity of the target gene and the TRPV4-mediated Ca2+ cation channel. Six major proteins from camel milk were first extracted and split with the enzyme pepsin. The antiviral properties were then analyzed using online bioinformatics programs, including AVPpred, Meta-iAVP, AMPfun, and ENNAVIA. The stability of the complex was assessed using MD simulation, MM/GBSA, and principal component analysis. Cytotoxicity evaluations were conducted using COPid and ToxinPred. The top ten AVPs, determined by optimal scores, were selected and saved for docking studies with the GalaxyPepDock tools. Bioinformatics analyses revealed that the peptides had very short hydrogen bond distances (1.8 to 3.6 Å) near the active site of the target protein. Approximately 76% of the peptide residues were 5–11 amino acids long. Additionally, the identified peptide candidates exhibited desirable properties for potential therapeutic agents, including a net positive charge, moderate toxicity, hydrophilicity, and selectivity. In conclusion, this computational study provides promising insights for discovering peptide-based therapeutic agents against DENV.

病毒是一种微小的生物实体,可以在生物体内迅速入侵和繁殖。每年有超过 36,000 人死于登革热病毒(DENV),近 4 亿人受到感染。尽管登革热是一种地方性疾病,但目前还没有针对登革热病毒的靶向有效抗病毒肽资源。抗病毒肽(AVPs)已显示出对抗不同病毒的巨大能力。加快抗病毒药物的发现至关重要,尤其是针对 RNA 病毒。DDX3X 是一种重要的细胞成分,支持病毒翻译并与 TRPV4 相互作用,调节病毒 RNA 代谢和感染性。其多样的信号通路使其成为潜在的治疗靶点。我们的研究重点是通过阻断靶基因和 TRPV4 介导的 Ca2+ 阳离子通道的活性来抑制病毒 RNA 翻译。我们首先从骆驼奶中提取了六种主要蛋白质,并用胃蛋白酶将其分离。然后使用在线生物信息学程序(包括 AVPpred、Meta-iAVP、AMPfun 和 ENNAVIA)分析其抗病毒特性。利用 MD 模拟、MM/GBSA 和主成分分析评估了复合物的稳定性。使用 COPid 和 ToxinPred 进行了细胞毒性评估。根据最佳得分确定的前十个 AVPs 被选中并保存起来,以便使用 GalaxyPepDock 工具进行对接研究。生物信息学分析表明,这些肽在目标蛋白质活性位点附近的氢键距离很短(1.8 至 3.6 Å)。约 76% 的多肽残基长度为 5-11 个氨基酸。此外,鉴定出的候选肽具有潜在治疗药物的理想特性,包括净正电荷、中等毒性、亲水性和选择性。总之,这项计算研究为发现基于多肽的抗 DENV 治疗药物提供了很有前景的见解。
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引用次数: 0
Analyzing fuzzy boundary value problems: a study on the influence of mitochondria and ER fluxes on calcium ions in neuron cells 分析模糊边界值问题:线粒体和ER通量对神经元细胞中钙离子影响的研究
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2023-12-08 DOI: 10.1007/s10863-023-09994-3
Rituparna Bhattacharyya, Brajesh Kumar Jha

Cytosolic-free calcium ions play an important role in various physical and physiological processes. A vital component of neural signaling is the free calcium ion concentration often known as the second messenger. There are many parameters that effect the cytosolic free calcium concentration like buffer, voltage-gated ion channels, Endoplasmic reticulum, Mitochondria, etc. Mitochondria are small organelles located within the nervous system that are involved in processes within cells such as calcium homeostasis management, energy generation, response to stress, and cell demise pathways. In this work, a mathematical model with fuzzy boundary values has been developed to study the effect of Mitochondria and ER fluxes on free Calcium ions. The intended findings are displayed utilizing the physiological understanding that amyloid beta plaques and tangles of neurofibrillary fibers have been identified as the two main causes of AD. The key conclusion of the work is the investigation of ({Ca}^{2+}) for healthy cells and cells affected by Alzheimer's disease, which may aid in the study of such processes for computational scientists and medical practitioners. Also, it has been shown that when a unique solution is found for a specific precise problem, it also successfully deals with any underlying ambiguity within the problem by utilizing a technique based on the principles of linear transformation. Furthermore, the comparison between the analytical approach and the generalized hukuhara derivative approach is shown here, which illustrates the benefits of the analytical approach. The simulation is carried out in MATLAB.

细胞膜游离钙离子在各种物理和生理过程中发挥着重要作用。神经信号的一个重要组成部分是游离钙离子浓度,通常被称为第二信使。影响细胞膜游离钙离子浓度的参数有很多,如缓冲液、电压门离子通道、内质网、线粒体等。线粒体是位于神经系统内的小型细胞器,参与细胞内的各种过程,如钙平衡管理、能量生成、应激反应和细胞死亡途径。在这项工作中,开发了一个具有模糊边界值的数学模型,以研究线粒体和 ER 通量对游离钙离子的影响。淀粉样 beta 斑块和神经纤维缠结已被确定为导致注意力缺失症的两个主要原因。这项工作的主要结论是研究健康细胞和受阿尔茨海默病影响的细胞的({Ca}^{2+}),这可能有助于计算科学家和医疗从业者研究此类过程。此外,研究还表明,当为特定的精确问题找到唯一解时,还可以利用基于线性变换原理的技术,成功处理问题中的任何潜在模糊性。此外,本文还展示了分析方法与广义赫库哈拉导数方法之间的比较,说明了分析方法的优势。仿真在 MATLAB 中进行。
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引用次数: 0
In vitro evaluation of 2-(1H-pyrazol-1-yl)-1,3,4-thiadiazole derivatives against replicative and infective stages of Trypanosoma cruzi. 2-(1H-吡唑-1-基)-1,3,4-噻二唑衍生物对克氏锥虫复制期和感染期的体外评价。
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2023-12-01 Epub Date: 2023-11-03 DOI: 10.1007/s10863-023-09982-7
Ana Flávia Martins Faria, Caroline de Souza Ferreira Pereira, Guilherme Pegas Teixeira, Raíssa Maria Dos Santos Galvão, Paulo Anastácio F Pacheco, Murilo Lamim Bello, Daiane Hardoim de Jesus, Kátia Calabrese, Daniel Tadeu Gomes Gonzaga, Nubia Boechat, Robson Xavier Faria

Current treatment of Chagas disease (CD) is based on two substances, nifurtimox (NT) and benzonidazole (BZ), both considered unsatisfactory mainly due to their low activities and high toxicity profile. One of the main challenges faced in CD management concerns the identification of new drugs active in the acute and chronic phases and with good pharmacokinetic profiles. In this work, we studied the bioactivity of twenty 2-(1H-pyrazol-1-yl)-1,3,4-thiadiazole derivatives against Trypanosoma cruzi epimastigotes and trypomastigotes. We identified seven derivatives with promising activity against epimastigote forms with IC50 values ranging from 6 µM to 44 µM. Most of the compounds showed no significant toxicity against murine macrophages. Our initial investigation on the mechanism of action indicates that this series of compounds may exert their anti-parasitic effect, inducing cell membrane damage. The results in trypomastigotes showed that one derivative, PDAN 78, satisfactorily inhibited metabolic alteration at all concentrations. Moreover, we used molecular modeling to understand how tridimensional and structural aspects might influence the observed bioactivities. Finally, we also used in silico approaches to assess the potential pharmacokinetic and toxicological properties of the most active compounds. Our initial results indicate that this molecular scaffold might be a valuable prototype for novel and safe trypanocidal compounds.

目前对恰加斯病(CD)的治疗是基于两种物质,硝呋噻肟(NT)和苯甲硝唑(BZ),这两种物质都被认为是不令人满意的,主要是因为它们的低活性和高毒性。CD管理面临的主要挑战之一涉及鉴定在急性期和慢性期具有活性且具有良好药代动力学特征的新药。在本工作中,我们研究了二十种2-(1H-吡唑-1-基)-1,3,4-噻二唑衍生物对克氏锥虫差向性和锥虫体的生物活性。我们鉴定了七种对差向异构体形式具有良好活性的衍生物,其IC50值范围为6µM至44µM。大多数化合物对小鼠巨噬细胞没有显示出显著的毒性。我们对其作用机制的初步研究表明,这一系列化合物可能发挥其抗寄生虫作用,诱导细胞膜损伤。胰蛋白酶的结果表明,一种衍生物PDAN78在所有浓度下都能令人满意地抑制代谢变化。此外,我们使用分子建模来了解三维和结构方面如何影响观察到的生物活性。最后,我们还使用了计算机模拟方法来评估最具活性化合物的潜在药代动力学和毒理学特性。我们的初步结果表明,这种分子支架可能是新的和安全的杀锥虫化合物的有价值的原型。
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引用次数: 0
DMPP attenuates lipopolysaccharide-induced lung injury by inhibiting glycocalyx degradation through activation of the cholinergic anti-inflammatory pathway. DMPP通过激活胆碱能抗炎途径抑制糖盏降解,从而减轻脂多糖诱导的肺损伤。
IF 3 4区 生物学 Q2 BIOPHYSICS Pub Date : 2023-12-01 Epub Date: 2023-10-18 DOI: 10.1007/s10863-023-09989-0
Feng Qi, Chengwei Duan, Tianpeng Chen, Feng Li, Jinsong Zhang

The study aimed to investigate the therapeutic potential of 1,1-dimethyl-4-phenylpiperazinium iodide (DMPP), an agonist of nicotinic acetylcholine receptor (nAChR), in treating acute lung injury (ALI) induced by lipopolysaccharide (LPS). A murine ALI model was developed utilizing intraperitoneal injection of LPS. We evaluated the therapeutic efficacy of DMPP treatment in LPS-induced lung injury using various approaches, including pathohistological evaluation, appraisal of pulmonary edema, and measurement of inflammatory cytokine levels and their associated pathways within lung tissues. The gene chip data of LPS-induced acute lung injury mice were retrieved from the Gene Expression Omnibus (GEO) database for gene differential expression analysis and Gene Set Enrichment Analysis (GSEA) analysis. The impact of DMPP on glycocalyx shedding was assessed by measuring the expression levels of syndecan-1 (SDC-1) and matrix metalloproteinase-9 (MMP-9). DMPP treatment significantly improved pathomorphological changes and pathological lung injury scores in the LPS-induced ALI mouse model. The genes expressed differentially in the LPS-induced ALI group in GSE2411 were found to be involved in multiple processes, including the NF-κB signaling pathway, NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, as well as the JAK-STAT signaling pathway. DMPP treatment effectively downregulated pro-inflammatory cytokines, suppressed the NF-κB signaling pathway, and effectively restrained the LPS-induced upregulation of MMP-9 and shedding of syndecan-1, thereby contributing to the preservation of endothelial glycocalyx and attenuation of endothelial barrier dysfunction. The administration of DMPP has been shown to confer protection against LPS-induced acute lung injury via a cholinergic anti-inflammatory pathway, which effectively inhibits endothelial glycocalyx degradation.

本研究旨在探讨烟碱型乙酰胆碱受体(nAChR)激动剂1,1-二甲基-4-苯基哌嗪鎓碘化物(DMPP)对脂多糖(LPS)诱导的急性肺损伤(ALI)的治疗潜力。利用腹腔注射LPS建立小鼠ALI模型。我们使用各种方法评估了DMPP治疗LPS诱导的肺损伤的疗效,包括病理学评估、肺水肿的评估以及肺组织内炎症细胞因子水平及其相关途径的测量。从基因表达综合数据库(GEO)中检索LPS诱导的急性肺损伤小鼠的基因芯片数据,用于基因差异表达分析和基因集富集分析(GSEA)分析。通过测量syndecan-1(SDC-1)和基质金属蛋白酶-9(MMP-9)的表达水平来评估DMPP对糖盏脱落的影响。DMPP治疗显著改善了LPS诱导的ALI小鼠模型的病理形态学变化和病理性肺损伤评分。发现GSE2411中LPS诱导的ALI组中差异表达的基因参与多个过程,包括NF-κB信号通路、NOD样受体信号通路、Toll样受体信号途径以及JAK-STAT信号通路。DMPP治疗有效下调促炎细胞因子,抑制NF-κB信号通路,并有效抑制LPS诱导的MMP-9上调和syndecan-1的脱落,从而有助于保护内皮糖盏和减轻内皮屏障功能障碍。DMPP的给药已被证明通过胆碱能抗炎途径对LPS诱导的急性肺损伤提供保护,该途径有效抑制内皮糖盏降解。
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引用次数: 0
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Journal of Bioenergetics and Biomembranes
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