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KunMingShanHaiTang formula reprograms macrophage metabolism and promotes M2 polarization via the HIF-1α pathway to alleviate ulcerative colitis symptoms in a rat model. 昆明山海棠方通过HIF-1α途径重编程巨噬细胞代谢,促进M2极化,减轻溃疡性结肠炎大鼠模型症状。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-06-01 Epub Date: 2025-04-02 DOI: 10.1007/s10863-025-10056-z
Zhiyun Zhang, Zhen Wang, Weiping Wan, Shumin Li, Wenzhi Yang, XiNan Shi

The KunMingShanHaiTang Formula (KMSHTF), adjusted by Professor Zhong Chuanhua for the treatment of ulcerative colitis (UC), is the work of a renowned veteran practitioner of Chinese medicine. However, its specific mechanism remains unknown. Consequently, it is intriguing to investigate the molecular mechanism by which KMSHTF treats UC. To elucidate the mechanism of KMSHTF in the treatment of UC in rats. Initially, the active ingredients and key target genes of KMSHTF in treating UC were analyzed using network pharmacology. Protein-Protein interaction and gene enrichment analyses were performed to predict key targets and pathways. Subsequently, UC rats were treated with KMSHTF, and the expression proteins in intestinal tissue were detected. Finally, the active compounds of KMSHTF intreating ulcerative colitis were further screened using Molecular Docking, and their pharmacological effects were validated through cell experiments. A total of 47 active compounds and 365 key target genes of KMSHTF for UC treatment were identified through the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform,along with the GeneCards database. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) Enrichment Analysis revealed that KMSHTF exerted its therapeutic effects on UC through regulating multiple pathways. In this study, the HIF-1α pathway was selected as the main molecular pathway of KMSHTF treating UC, and further validation was conducted through in vivo and in vitro experiments.Animal studies revealed that KMSHTF significantly ameliorated UC symptoms in rats, including diarrhea,rectal bleeding and specific pathological alterations in the intestinal wall. Furthermore, KMSHTF reduced pro-inflammatory cytokines IL-6 and TNF-α, up-regulated IL-4 of M2 macrophages and down-regulated iNOS and IL-1β of M1 macrophages. Additionally, it decreased the expression levels of HKII and GLUT1 related HIF-1α pathway. The three active compounds of KMSHTF, Baicalein, Palmatine and Triptonide-were selected based on their strong binding affinity with HIF-1α and HKII through computational molecular docking. Cellular experiments demonstrated that each of these compounds downregulated the protein expression levels of HIF-1α, HKII, GLUT1 and IL-6 in an intestinal wall cell model. Of Note, Baicalein exhibited the most pronounced effect. However, the overexpression of HIF-1α reversed the Baicalein-induced downregulation of HKII, GLUT1 and IL-6 at the protein level in vitro. KMSHTF may modulate macrophage metabolism to promote M2 polarization through the HIF-1α pathway, thereby contributing to its therapeutic efficacy in ulcerative colitis (UC). Baicalein, Palmatine, and Triptonide are the three core active compounds of KMSHTF that primarily contribute to this hypothesis.

由钟传华教授调制的治疗溃疡性结肠炎的“昆明山海棠方”,是著名老中医的作品。然而,其具体机制尚不清楚。因此,研究KMSHTF治疗UC的分子机制是很有趣的。目的:探讨KMSHTF治疗大鼠UC的作用机制。首先利用网络药理学分析KMSHTF治疗UC的有效成分和关键靶基因。通过蛋白-蛋白相互作用和基因富集分析来预测关键靶点和途径。随后,用KMSHTF处理UC大鼠,检测其在肠组织中的表达蛋白。最后,利用分子对接技术进一步筛选KMSHTF治疗溃疡性结肠炎的活性化合物,并通过细胞实验验证其药理作用。通过中药系统药理学数据库和分析平台,以及GeneCards数据库,共鉴定出47种KMSHTF治疗UC的活性化合物和365个关键靶基因。基因本体(GO)和京都基因基因组百科全书(KEGG)富集分析显示,KMSHTF通过调控多种途径发挥其对UC的治疗作用。本研究选择HIF-1α途径作为KMSHTF治疗UC的主要分子途径,并通过体内和体外实验进行进一步验证。动物实验显示,KMSHTF可显著改善大鼠UC症状,包括腹泻、直肠出血和肠壁特异性病理改变。此外,KMSHTF降低促炎因子IL-6和TNF-α,上调M2巨噬细胞IL-4,下调M1巨噬细胞iNOS和IL-1β。此外,它还能降低HKII和GLUT1相关HIF-1α通路的表达水平。基于KMSHTF与HIF-1α和HKII较强的结合亲和力,通过计算分子对接筛选出黄芩素、棕榈素和雷公藤素3个活性化合物。细胞实验表明,这些化合物在肠壁细胞模型中下调HIF-1α、HKII、GLUT1和IL-6的蛋白表达水平。值得注意的是,黄芩苷表现出最明显的效果。然而,HIF-1α的过表达在蛋白水平上逆转了黄芩素诱导的HKII、GLUT1和IL-6的下调。KMSHTF可能通过HIF-1α途径调节巨噬细胞代谢,促进M2极化,从而发挥其治疗溃疡性结肠炎(UC)的作用。黄芩素、棕榈碱和雷公藤内酯是KMSHTF的三种核心活性化合物,主要有助于这一假设。
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引用次数: 0
Mechanism of LncRNA CBR3-AS1 in regulating pyroptosis of intestinal epithelial cells in ulcerative colitis. LncRNA CBR3-AS1调控溃疡性结肠炎肠上皮细胞焦亡的机制
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-06-01 Epub Date: 2025-04-21 DOI: 10.1007/s10863-025-10060-3
Xi Li, Caiwen Yan, Suxia Li, Lujun Shen, Lijuan Huo

Ulcerative colitis (UC) is a common chronic relapsing inflammatory disease that threatens human life. This study aims to explore the mechanism of LncRNA CBR3-AS1 in pyroptosis of intestinal epithelial cells in UC. The levels of CBR3-AS1, KLF2, and SUGT1 in UC cells were detected. After downregulating CBR3-AS1 expression, cell viability and pyroptosis were measured, followed by the detection of SOD and MDA levels. The binding of CBR3-AS1 to EZH2, enrichment of EZH2 and H3K27me3 on the KLF2 promoter, and binding of KLF2 to the SUGT1 promoter were assayed. The role of CBR3-AS1 in pyroptosis was validated in animal models. We found that CBR3-AS1 and SUGT1 were increased in UC cells, and KLF2 was decreased. After downregulation of CBR3-AS1, cell viability was increased and pyroptosis was alleviated. CBR3-AS1 recruited EZH2 to occupy the KLF2 promoter, leading to increased H3K27me3 levels and suppressed KLF2 expression, reducing the enrichment of KLF2 on the SUGT1 promoter, finally promoting SUGT1 expression. SUGT1 overexpression or KLF2 downregulation alleviated the protective effect of silencing CBR3-AS1 on pyroptosis in UC cells. CBR3-AS1 downregulation alleviates cell pyroptosis in colonic tissues. In conclusion, CBR3-AS1 exacerbated pyroptosis of intestinal epithelial cells in UC via the KLF2/SUGT1 pathway.

溃疡性结肠炎(UC)是一种常见的慢性复发性炎症性疾病,威胁着人类的生命安全。本研究旨在探讨LncRNA CBR3-AS1在UC肠上皮细胞焦亡中的作用机制。检测UC细胞中CBR3-AS1、KLF2、SUGT1水平。下调CBR3-AS1表达后,测定细胞活力和焦亡率,检测SOD和MDA水平。研究了CBR3-AS1与EZH2的结合、EZH2和H3K27me3在KLF2启动子上的富集以及KLF2与SUGT1启动子的结合。在动物模型中验证了CBR3-AS1在焦亡中的作用。我们发现CBR3-AS1和SUGT1在UC细胞中升高,KLF2降低。下调CBR3-AS1后,细胞活力增加,焦亡减轻。CBR3-AS1招募EZH2占据KLF2启动子,导致H3K27me3水平升高,抑制KLF2表达,减少了KLF2在SUGT1启动子上的富集,最终促进了SUGT1的表达。SUGT1过表达或KLF2下调可减轻沉默CBR3-AS1对UC细胞焦亡的保护作用。下调CBR3-AS1可减轻结肠组织细胞焦亡。综上所述,CBR3-AS1通过KLF2/SUGT1通路加重UC中肠上皮细胞的焦亡。
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引用次数: 0
Correction: Dexmedetomidine activates mitophagy and protects against pyroptosis in oxygen-glucose deprivation/reperfusion-induced brain damage via PINK1/Parkin pathway activation. 更正:右美托咪定通过激活PINK1/Parkin通路激活氧葡萄糖剥夺/再灌注诱导的脑损伤,激活线粒体自噬并防止焦凋亡。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-06-01 DOI: 10.1007/s10863-025-10058-x
Jieru Zhang, Ruxia Li, Luyong Wang, Shuqin Ni
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引用次数: 0
Amyloid beta (Aβ) fibrillation kinetics and its impact on membrane polarity. 淀粉样蛋白(Aβ)颤动动力学及其对膜极性的影响。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-02-01 Epub Date: 2025-01-06 DOI: 10.1007/s10863-024-10046-7
Arun Ajaikumar, Nozomi Morishita Watanabe, Keishi Suga, Yukihiro Okamoto, Hiroshi Umakoshi

Fibrillation of the amyloid beta (Aβ) peptide has often been associated with neurodegenerative pathologies such as Alzheimer's disease. In this study we examined the influence of several potential compositions of the lipid membrane on Aβ fibrillation by using liposomes as a basic model membrane. Firstly, it was revealed that Aβ fibrillation kinetics were enhanced and had the potential to occur at a faster rate on more fluid membranes compared to solid membranes. Next, the extent of fibril-related damage to membranes was examined with analysis of membrane polarity via the steady-state emission spectra of 6-dodecanoyl-2-dimethylaminonaphthalene (Laurdan). It was revealed that there was slight hydration behavior of the membrane during the lag phase (tlag) of the kinetic process, possibly coinciding with Aβ monomer binding. However, as the fibrillation kinetic process continued the membrane gradually dehydrated. Hydration states of membranes during and after Aβ fibrillation processes were further examined via deconvolution analysis of the obtained Laurdan spectra. This allows a mapping of membrane hydration from the interior to exterior regions of the lipid membrane. Results revealed slight but definitive variations in deeper region membrane polarity during the time course of Aβ fibrillation, suggesting Aβ aggregation impacts not only the surface level aggregating region but also the inner regions of the membrane. These results can ultimately contribute to the future investigations of the nature of the membrane damage caused by Aβ aggregation.

淀粉样蛋白β (Aβ)肽的纤颤常与神经退行性病变如阿尔茨海默病有关。在这项研究中,我们以脂质体作为基本模型膜,研究了脂膜的几种潜在成分对心房纤颤的影响。首先,发现与固体膜相比,在更多的流体膜上,a β颤动动力学得到增强,并且有可能以更快的速度发生。接下来,通过6-十二烷基-2-二甲氨基萘(Laurdan)的稳态发射光谱分析膜极性,研究了原纤维对膜的损伤程度。结果表明,在动力学过程的滞后期(flag),膜有轻微的水化行为,可能与Aβ单体结合相吻合。然而,随着纤颤动力学过程的继续,膜逐渐脱水。通过对得到的Laurdan光谱进行反褶积分析,进一步研究了纤颤过程中和纤颤过程后膜的水合状态。这允许从脂质膜的内部到外部区域的膜水合作用的映射。结果显示,在Aβ颤动的时间过程中,深层膜极性发生了轻微但明确的变化,表明Aβ聚集不仅影响表面聚集区域,而且影响膜的内部区域。这些结果最终有助于未来研究由Aβ聚集引起的膜损伤的性质。
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引用次数: 0
Acute CCl4-induced intoxication reduces complex I, but not complex II-based mitochondrial bioenergetics - protective role of succinate. 急性 CCl4 诱导的中毒会降低基于复合体 I 的线粒体生物能,但不会降低基于复合体 II 的线粒体生物能--琥珀酸的保护作用。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-02-01 Epub Date: 2024-12-13 DOI: 10.1007/s10863-024-10047-6
Fozila R Ikromova, Feruzbek A Khasanov, Malika J Saidova, Ravshan K Shokirov, Shakhlo Gazieva, Abdukhakim M Khadjibaev, Davron B Tulyaganov, Rustam N Akalaev, Yulia V Levitskaya, Amir A Stopnitskiy, Artyom Y Baev

The main therapeutic strategy for the treatment of patients with toxic liver failure is the elimination of the toxic agent in combination with the targeted mitigation of pathological processes that have been initiated due to the toxicant. In the current research we evaluated the strategy of metabolic supplementation to improve mitochondrial bioenergetics during acute liver intoxication. In our study, we have shown that acute CCl4-induced intoxication negatively affects Complex I (in the presence of glutamate-malate as energy substrates) based respiration, generation of mitochondrial membrane potential (ΔΨm), mitochondrial NAD(P)H pool and NADH redox index, mitochondrial calcium retention capacity (CRC) and structure and functions of the liver. Boosting of mitochondrial bioenergetics through the complex II, using succinate as metabolic substrate in vitro, significantly improved mitochondrial respiration and generation of ΔΨm, but not mitochondrial CRC. Co-application of rotenone along with succinate, to prevent possible reverse electron flow, didn't show significant differences compared to the effects of succinate alone. Treatment of animals with acute liver failure, using a metabolic supplement containing succinate, inosine, methionine and nicotinamide improved Complex I based respiration, generation of ΔΨm, mitochondrial NAD(P)H pool and NADH redox index, mitochondrial CRC and slightly decreased the level of oxidative stress. These changes resulted in averting destructive and dystrophic changes in the structure of rat liver tissue caused by CCl4 intoxication, concomitantly enhancing hepatic functionality. Thus, we propose that metabolic supplementation targeting complex II could serve as a potential adjunctive therapy in the management of acute liver intoxication.

治疗中毒性肝衰竭患者的主要治疗策略是消除毒性药物,并结合有针对性地减轻由毒性药物引起的病理过程。在目前的研究中,我们评估了代谢补充的策略,以改善线粒体生物能量在急性肝中毒。在我们的研究中,我们已经表明,急性ccl4诱导的中毒对复合物I(谷氨酸-苹果酸盐作为能量底物存在)为基础的呼吸、线粒体膜电位的产生(ΔΨm)、线粒体NAD(P)H池和NADH氧化还原指数、线粒体钙保留能力(CRC)以及肝脏的结构和功能产生负面影响。体外使用琥珀酸盐作为代谢底物,通过复合物II提高线粒体生物能量,显著改善线粒体呼吸和ΔΨm的产生,但没有改善线粒体CRC。鱼藤酮与琥珀酸盐共同应用,以防止可能的反向电子流,与琥珀酸盐单独应用相比,效果没有显着差异。使用含有琥珀酸、肌苷、蛋氨酸和烟酰胺的代谢补充剂治疗急性肝衰竭动物,改善了复合物I为基础的呼吸、ΔΨm的产生、线粒体NAD(P)H库和NADH氧化还原指数、线粒体CRC,并略微降低了氧化应激水平。这些变化避免了CCl4中毒引起的大鼠肝组织结构的破坏性和营养不良变化,同时增强了肝功能。因此,我们提出针对复合物II的代谢补充可以作为急性肝中毒管理的潜在辅助治疗。
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引用次数: 0
Sirt6 regulates the Notch signaling pathway and mediates autophagy and regulates podocyte damage in diabetic nephropathy. Sirt6调节Notch信号通路,介导自噬,调节糖尿病肾病足细胞损伤。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-02-01 Epub Date: 2025-01-04 DOI: 10.1007/s10863-024-10049-4
Ping Ma, Hailin Shao, Donghong Xu, Xiaoyu Qi

To investigate the role of silent information regulator 6 (SIRT6) in regulating podocyte injury in diabetic nephropathy (DN) through autophagy mediated by Notch signaling pathway. A blank control group (group A), a diabetic nephropathy group (group B), and a Sirt6 intervention group (group C) were established. The group A cells were human normal glomerular podocyte cell lines (HGPCs) without any treatment. In group B, the cells were cultivated in glucose medium containing 30 mmol/L and a 10 µmol/L anti-LSirt6 antibody solution. Three sets of cells were tested for their capacity to proliferate via CCK8, for protein expression via Western blot, for associated mRNA expression levels via qPCR, and for cell migration and invasion ability via Transwell. The podocyte proliferation and migration activity in group B were reduced compared to group A, while these properties in group C were elevated compared to group B (DN). B Group is diabetes nephropathy. Compared with those in group B, the number of invading podocytes in group C were greater than those in group A, and the overall apoptosis rate in group C was lower than that in group B. The expression levels of apoptotic proteins in the podocytes in group C were greater than those in group B, and the bcl-2 level was lower than those in group B. The Notch1 and Jagged1 mRNA and protein levels in the podocytes in group B were greater than those in group A, whereas those in the podocytes in group C were lower than those in group B. Sirt6 can protect against podocyte autophagy injury in DN by regulating the Notch1 signaling pathway.

探讨沉默信息调节因子6 (SIRT6)通过Notch信号通路介导的自噬调节糖尿病肾病(DN)足细胞损伤的作用。设空白对照组(A组)、糖尿病肾病组(B组)、Sirt6干预组(C组)。A组细胞为未经任何处理的人正常肾小球足细胞(HGPCs)。B组细胞在含有30 mmol/L和10µmol/L抗lsirt6抗体溶液的葡萄糖培养基中培养。通过CCK8检测三组细胞的增殖能力,通过Western blot检测蛋白质表达,通过qPCR检测相关mRNA表达水平,通过Transwell检测细胞迁移和侵袭能力。B组足细胞增殖和迁移活性较A组降低,而C组足细胞增殖和迁移活性较B组升高(DN)。B组为糖尿病肾病。与B组相比,C组的入侵足细胞数量大于A组,和整体在C组细胞凋亡率低于B组在足细胞凋亡蛋白的表达水平在C组高于B组,和bcl - 2水平低于B组Notch1和Jagged1信使rna和蛋白质水平的足细胞在B组高于A组,Sirt6通过调节Notch1信号通路对DN足细胞自噬损伤起到保护作用。
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引用次数: 0
Nigericin modifies the mechanism of the uncoupling action of bile acids in rat liver mitochondria by converting ΔpH into Δψ. 尼日利亚菌素通过将ΔpH转化为Δψ来改变胆汁酸在大鼠肝脏线粒体中解偶联作用的机制。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-02-01 Epub Date: 2024-12-19 DOI: 10.1007/s10863-024-10048-5
Evgeniya K Pavlova, Victor N Samartsev, Mikhail V Dubinin

Cholestasis caused by impaired bile secretion in the liver is associated with the accumulation of primary bile acids (BA): cholic acid (CA) and chenodeoxycholic acid (CDCA) in the cells of this organ. The paper studies the uncoupling effect of the CA and CDCA on the succinate-fueled rat liver mitochondria under conditions of ΔpH to Δψ conversion by nigericin. It has been established that without nigericin, the dependence of the resting-state (state 4) respiration rate on the concentrations of these BA is nonlinear and is described by a parabolic equation. Under these conditions, the specific inhibitor of the ADP/ATP-antiporter - carboxyatractylate and the substrate of the aspartate/glutamate-antiporter - glutamate do not affect the state 4 respiration of mitochondria stimulated by these BA. It is suggested that without nigericin, the protonophore action of BA is due to the formation of a dimeric complex of their anion with the acid. In the presence of nigericin, the dependence of state 4 respiration rate on BA concentration is linear. Under these conditions, carboxyatractylate inhibits BA-stimulated respiration. Unlike the CDCA, the uncoupling action of CA is also suppressed by the substrates of the aspartate/glutamate-antiporter. The obtained results are considered as evidence that in the presence of nigericin, uncoupling action of CDCA is carried out primarily with the participation of ADP/ATP-antiporter. Both ADP/ATP-antiporter and aspartate/glutamate-antiporter are involved in the uncoupling action of CA. It is concluded that nigericin modifies the mechanism of the uncoupling action of BA in liver mitochondria by converting ΔpH to Δψ.

胆汁分泌受损引起的胆汁淤积与原发性胆汁酸(BA):胆酸(CA)和鹅去氧胆酸(CDCA)在肝脏细胞中的积累有关。本文研究了在尼日利亚菌素ΔpH转化为Δψ的条件下,CA和CDCA对琥珀酸燃料大鼠肝脏线粒体的解偶联作用。已经确定,在没有尼日利亚菌素的情况下,静息状态(状态4)呼吸速率对这些BA浓度的依赖是非线性的,并由抛物线方程描述。在这些条件下,ADP/ atp -反转运蛋白的特异性抑制剂-羧atractylate和天冬氨酸/谷氨酸-反转运蛋白的底物-谷氨酸不影响这些BA刺激的线粒体的状态4呼吸。这表明,在没有尼日利亚菌素的情况下,BA的质子团作用是由于它们的阴离子与酸形成二聚体配合物。在尼日利亚菌素存在的情况下,状态4呼吸速率与BA浓度呈线性关系。在这些条件下,羧酸atractyate抑制ba刺激的呼吸。与CDCA不同,CA的解偶联作用也受到天冬氨酸/谷氨酸反转运蛋白底物的抑制。得到的结果被认为是证据,在尼日利亚菌素存在下,CDCA的解偶联作用主要是在ADP/ atp反转运蛋白的参与下进行的。ADP/ atp -反转运蛋白和天冬氨酸/谷氨酸-反转运蛋白均参与CA的解偶联作用。由此可见,尼日利亚菌素通过将ΔpH转化为Δψ来改变BA在肝脏线粒体中的解偶联作用机制。
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引用次数: 0
Lithium compromises the bioenergetic reserve of cardiomyoblasts mitochondria. 锂损害了心肌细胞线粒体的生物能量储备。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2025-02-01 Epub Date: 2025-01-24 DOI: 10.1007/s10863-024-10050-x
Marian Grman, Maria Balazova, Anton Horvath, Katarina Polcicova, Katarina Ondacova, Jakub Stepanovsky, Zuzana Sevcikova Tomaskova

Lithium is used in the long-term treatment of bipolar disorder, exhibiting a beneficial effect on the neuronal cells. The concentration of lithium in the blood serum can vary and can easily approach a level that is related to cardiotoxic adverse effects. This is due to its narrow therapeutic index. In this study, we investigated the effect of higher than therapeutic dose of lithium. Rat cardiomyoblast cells were treated with 2 mM LiCl for 48 h, after which the mitochondrial parameters of the cells were analyzed. Lithium exposure reduced maximal respiratory capacity by diminishing reserve respiratory capacity (RRC), linked to a decrease in complex I (NADH dehydrogenase) activity and elevated superoxide radical levels. In addition, lithium treatment altered the composition of cellular membranes, including mitochondrial cardiolipin, a lipid essential for mitochondrial function. These findings suggest that impaired complex I activity, oxidative stress, and cardiolipin depletion collectively impair the ability of cells to meet high energy demands.

锂用于双相情感障碍的长期治疗,显示出对神经元细胞有益的影响。血清中锂的浓度可以变化,并且很容易接近与心脏毒性不良反应有关的水平。这是由于其狭窄的治疗指数。在本研究中,我们研究了高于治疗剂量的锂的影响。用2 mM LiCl处理大鼠成心肌细胞48 h,分析细胞线粒体参数。锂暴露通过降低储备呼吸能力(RRC)来降低最大呼吸能力,这与复合物I (NADH脱氢酶)活性降低和超氧化物自由基水平升高有关。此外,锂处理改变了细胞膜的组成,包括线粒体心磷脂,这是线粒体功能所必需的脂质。这些发现表明,复合物I活性受损、氧化应激和心磷脂耗竭共同损害了细胞满足高能量需求的能力。
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引用次数: 0
Modifications of the respiratory chain of Bacillus licheniformis as an alkalophilic and cyanide-degrading microorganism. 地衣芽孢杆菌作为一种嗜碱和降解氰化物微生物的呼吸链改造。
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2024-12-01 Epub Date: 2024-11-05 DOI: 10.1007/s10863-024-10041-y
Daniel Uribe-Ramírez, Lucero Romero-Aguilar, Héctor Vázquez-Meza, Eliseo Cristiani-Urbina, Juan Pablo Pardo

Bacillus licheniformis can use cyanide as a nitrogen source for its growth. However, it can also carry out aerobic respiration in the presence of this compound, a classic inhibitor of mammalian cytochrome c oxidase, indicating that B. licheniformis has a branched respiratory chain with various terminal oxidases. Here, we studied the modifications in the respiratory chain of B. licheniformis when cells were cultured in Nutrient Broth, an alkaline medium with ammonium, or an alkaline medium with cyanide. Then, we measured oxygen consumption in intact cells and membranes, enzyme activities, carried out 1D and 2D-BN-PAGE, followed by mass spectrometry analysis of BN-PAGE bands associated with NADH, NADPH, and succinate dehydrogenase activities. We found that cell growth was favored in a nutrient medium than in an alkaline medium with cyanide. In parallel, respiratory activity progressively decreased in cells cultured in the rich medium, alkaline medium with ammonium, and the lowest activity was in the cells growing in the alkaline medium with cyanide. B. licheniformis membranes contain NADH, NADPH, and succinate dehydrogenases, and the proteomic analysis detected the nitrate reductase and the bc, caa3, aa3, and bd complexes. The succinate dehydrogenase migrated with a molecular mass of 375 kDa, indicating its association with the nitrate reductase (115 kDa + 241 kDa, respectively). The NADH dehydrogenase of B. licheniformis forms aggregates of different molecular mass.

地衣芽孢杆菌可以利用氰化物作为其生长的氮源。然而,地衣芽孢杆菌在这种化合物(哺乳动物细胞色素 c 氧化酶的典型抑制剂)存在的情况下也能进行有氧呼吸,这表明地衣芽孢杆菌有一条带有多种末端氧化酶的分支呼吸链。在此,我们研究了地衣芽孢杆菌在营养肉汤、含铵的碱性培养基或含氰化物的碱性培养基中培养细胞时呼吸链的变化。然后,我们测量了完整细胞和细胞膜的耗氧量、酶活性,进行了一维和二维-BN-PAGE 分析,并对与 NADH、NADPH 和琥珀酸脱氢酶活性相关的 BN-PAGE 条带进行了质谱分析。我们发现,细胞在营养培养基中比在含有氰化物的碱性培养基中更容易生长。同时,在富营养化培养基和含铵的碱性培养基中培养的细胞呼吸活性逐渐降低,而在含氰的碱性培养基中生长的细胞呼吸活性最低。地衣芽孢杆菌膜含有 NADH、NADPH 和琥珀酸脱氢酶,蛋白质组分析检测到硝酸还原酶和 bc、caa3、aa3 和 bd 复合物。琥珀酸脱氢酶迁移的分子质量为 375 kDa,表明它与硝酸还原酶(分别为 115 kDa + 241 kDa)有关联。地衣芽孢杆菌的 NADH 脱氢酶形成了不同分子质量的聚集体。
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引用次数: 0
Effects of MMP2 and its inhibitor TIMP2 on DNA damage, apoptosis and senescence of human lens epithelial cells induced by oxidative stress. MMP2 及其抑制剂 TIMP2 对氧化应激诱导的人晶状体上皮细胞 DNA 损伤、凋亡和衰老的影响
IF 2.9 4区 生物学 Q2 BIOPHYSICS Pub Date : 2024-12-01 Epub Date: 2024-11-14 DOI: 10.1007/s10863-024-10044-9
Xinran Deng, Yan Zhang, Xiwei He, Li Li, Zhongbin Yue, Yong Liang, Yue Huang

Oxidative stress-induced lens epithelial cells (LECs) death plays a pivotal role in pathogenesis of age-related cataract (ARC), causing significant visual impairment. Apoptosis of porcine granulosa cells mediated by MMP2 is linked to DNA damage. The current study aimed to investigate the potential mechanism of MMP2 in DNA damage, apoptosis and senescence of lens epithelial cells caused by oxidative stress. HLE-B3 cells were treated with different doses of H2O2 for 24 h, and CCK-8 was used to detect cell viability. Furthermore, western blotting was used to detect the expressions of MMP2, Bcl2, Bax, cleaved caspase3, γ-H2AX, p16, p21, and TIMP2. DCFH-DA staining was used to assess ROS levels. Moreover, EdU staining was used to detect cell proliferation, and flow cytometry was used to detect cell apoptosis. Then, 15A3 immunofluorescence staining and γ-H2AX staining were used to detect DNA damage. In addition, SA-β-gal staining was used to observe cell senescence. The present findings suggest that oxidative stress triggers damage to LECs viability and elevates the expression of MMP2. Furthermore, MMP2 interference attenuates H2O2-induced active damage, apoptosis, DNA damage, and cellular senescence in LECs. Additionally, TIMP2 expression is down-regulated in H2O2-induced LECs, which suppresses the expression of MMP2 induced by H2O2. These findings highlight the crucial role of MMP2 and TIMP2 in the modulation of oxidative stress-induced cellular responses in LECs. Collectively, TIMP2 alleviates H2O2-induced lens epithelial cell viability damage, apoptosis, DNA damage and cell senescence in LECs by inhibiting MMP2.

氧化应激诱导的晶状体上皮细胞(LECs)死亡在老年性白内障(ARC)的发病机制中起着关键作用,会导致严重的视力损伤。MMP2介导的猪颗粒细胞凋亡与DNA损伤有关。本研究旨在探讨MMP2在氧化应激导致的晶状体上皮细胞DNA损伤、凋亡和衰老中的潜在机制。用不同剂量的 H2O2 处理 HLE-B3 细胞 24 小时,并用 CCK-8 检测细胞活力。此外,还采用 Western 印迹法检测 MMP2、Bcl2、Bax、裂解的 caspase3、γ-H2AX、p16、p21 和 TIMP2 的表达。DCFH-DA 染色用于评估 ROS 水平。此外,EdU 染色用于检测细胞增殖,流式细胞术用于检测细胞凋亡。然后,用 15A3 免疫荧光染色和 γ-H2AX 染色检测 DNA 损伤。此外,还采用 SA-β-gal 染色法观察细胞衰老。本研究结果表明,氧化应激会导致 LECs 的活力受损,并升高 MMP2 的表达。此外,MMP2干扰可减轻H2O2诱导的LECs活性损伤、细胞凋亡、DNA损伤和细胞衰老。此外,H2O2 诱导的 LEC 中 TIMP2 表达下调,从而抑制了 H2O2 诱导的 MMP2 的表达。这些发现凸显了 MMP2 和 TIMP2 在调节氧化应激诱导的 LECs 细胞反应中的关键作用。总之,TIMP2 通过抑制 MMP2 减轻了 H2O2 诱导的 LECs 晶状体上皮细胞活力损伤、凋亡、DNA 损伤和细胞衰老。
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引用次数: 0
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Journal of Bioenergetics and Biomembranes
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