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Important functions and molecular mechanisms of aquaporins family on respiratory diseases: potential translational values. 水汽蛋白家族对呼吸系统疾病的重要功能和分子机制:潜在的转化价值。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-10-07 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98829
Jinshan Li, Dongyong Yang, Lanlan Lin, Liying Yu, Luyang Chen, Kaiqiang Lu, Jieli Lan, Yiming Zeng, Yuan Xu

Aquaporins (AQPs) are a subgroup of small transmembrane transporters that are distributed in various types of tissues, including the lung, kidney, heart and central nervous system. It is evident that respiratory diseases represent a significant global health concern, with a considerable number of deaths occurring worldwide. Recent researches have demonstrated that AQPs play a pivotal role in respiratory diseases, including chronic obstructive pulmonary disease (COPD), asthma, acute respiratory distress syndrome (ARDS), and particularly non-small cell lung cancer (NSCLC). In the context of NSCLC, the overexpression of AQP1, AQP3, AQP4, and AQP5 has been demonstrated to facilitate tumor angiogenesis, as well as the proliferation, migration, and invasiveness of tumor cells. This review concisely explores the role of AQP family on respiratory diseases, to assess their clinical and translational significance for understanding molecular pathogenesis. However, the potential translation of AQPs biomarkers into clinical applications is promising and the understanding of the precise mechanisms influencing respiratory diseases is still ongoing. Addressing the challenges and outlining the future perspectives in AQPs development is essential for clinical progress in a concise manner.

水汽蛋白(AQPs)是小型跨膜转运体的一个亚群,分布于各类组织,包括肺、肾、心脏和中枢神经系统。很明显,呼吸系统疾病是全球关注的重大健康问题,在全世界造成了大量死亡。最新研究表明,AQPs 在慢性阻塞性肺病(COPD)、哮喘、急性呼吸窘迫综合征(ARDS),尤其是非小细胞肺癌(NSCLC)等呼吸系统疾病中发挥着关键作用。就非小细胞肺癌而言,AQP1、AQP3、AQP4 和 AQP5 的过度表达已被证明可促进肿瘤血管生成以及肿瘤细胞的增殖、迁移和侵袭性。这篇综述简明扼要地探讨了 AQP 家族在呼吸系统疾病中的作用,以评估其在了解分子发病机制方面的临床和转化意义。然而,将 AQPs 生物标记物转化为临床应用的潜力巨大,而对影响呼吸系统疾病的确切机制的理解仍在进行中。以简明扼要的方式应对 AQPs 开发中的挑战并勾勒出未来的发展前景对临床进展至关重要。
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引用次数: 0
Development and Validation of a Nomogram for Axillary Lymph Node Metastasis Risk in Breast Cancer. 乳腺癌腋窝淋巴结转移风险提名图的开发与验证
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-10-07 eCollection Date: 2024-01-01 DOI: 10.7150/jca.100651
Shijing Wang, He Zhang, Xin Wang, Juanhan Yu, Qingfu Zhang, Yiwen Zheng, Tangbo Zhang, Xiaoyun Mao

Purpose: Preoperative assessment of axillary lymph node (ALN) status is essential for breast cancer treatment planning. This study prospectively analyzed risk factors for ALN metastasis by comparing high-resolution computed tomography (HRCT) imaging with pathology and developed a nomogram to aid in diagnosis. Methods: From April 2023 to May 2024, breast cancer patients confirmed by pathology participated in the study. All had chest HRCT before surgery, and ALN samples were anatomically matched to HRCT imaging and pathology. The least absolute shrinkage and selection operator (LASSO) regression helped refine metastasis features, and a nomogram was constructed using the final selected features determined by multivariate logistic regression. The nomogram's performance was evaluated with concordance index (C-index), calibration plot, and decision curve analysis, with internal validation through bootstrapping. Results: A total of 302 ALN from 98 patients were included in this study. The predictors included in the nomogram encompassed the mean CT value, short diameter, border, and shape of ALN, as well as the Ki-67 status and histological grade of the primary tumor. The model exhibited satisfactory discrimination, with a C-index of 0.869 (95% CI: 0.826-0.912) and an AUC of 0.862 (95% CI, 0.815-0.909). The calibration curve demonstrated a high degree of concordance between the predicted and actual probabilities. The decision curve analysis demonstrated that the nomogram was clinically useful when the threshold for intervention was set at the metastasis possibility range of 1% to 86%. Conclusion: The nomogram combined with preoperative pathology and HRCT imaging have the potential to improve the evaluation of ALN status.

目的:术前评估腋窝淋巴结(ALN)状态对乳腺癌治疗计划至关重要。本研究通过比较高分辨率计算机断层扫描(HRCT)成像和病理结果,前瞻性地分析了ALN转移的风险因素,并开发了一种辅助诊断的提名图。研究方法2023年4月至2024年5月期间,经病理证实的乳腺癌患者参与了该研究。所有患者在手术前都进行了胸部 HRCT 检查,ALN 样本与 HRCT 成像和病理进行了解剖匹配。最小绝对收缩和选择算子(LASSO)回归法帮助完善了转移特征,并利用多变量逻辑回归法确定的最终选定特征构建了一个提名图。通过一致性指数(C-index)、校准图和决策曲线分析评估了提名图的性能,并通过引导法进行了内部验证。结果:本研究共纳入了 98 名患者的 302 个 ALN。提名图中的预测因素包括平均 CT 值、ALN 的短径、边界和形状,以及原发肿瘤的 Ki-67 状态和组织学分级。该模型的辨别能力令人满意,C指数为0.869(95% CI:0.826-0.912),AUC为0.862(95% CI:0.815-0.909)。校准曲线显示预测概率与实际概率高度一致。决策曲线分析表明,当干预阈值设定在转移可能性范围 1% 到 86% 时,提名图在临床上是有用的。结论:提名图结合术前病理学和 HRCT 成像有可能改善 ALN 状态的评估。
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引用次数: 0
Establishment and assessment of an oral squamous cell carcinoma N7-methylguanosine methyltransferase associated microRNA prognostic model. 口腔鳞状细胞癌 N7-甲基鸟苷甲基转移酶相关微RNA预后模型的建立与评估
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-30 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98350
Jianrong Li, Chu Li, Xiaolian Li, Yuling Chen, Zhangfu Li, Yuntao Lin, Huan Jing, Yufan Wang, Hongyu Yang

Background: N7-methylguanosine (m7G) methyltransferases and microRNAs (miRNAs) are closely associated with tumor progression. However, the role of m7G methyltransferase-related miRNAs as prognostic markers in oral squamous cell carcinoma (OSCC) has not been studied. This study aimed to explore the m7G methyltransferase-related miRNAs in OSCC, establish a prognostic model based on m7G methyltransferase-related miRNAs, investigate their correlation with immune cell infiltration, and assess their potential prognostic value. Methods: Transcriptional and clinical data of patients with OSCC were obtained from The Cancer Genome Atlas (TCGA) database. TargetScan and miRWalk were used to predict m7G methyltransferase-related miRNAs. Subsequently, differentially expressed m7G methyltransferase-related miRNAs in TCGA-OSCC were selected. Cox and least absolute shrinkage and selection operator (LASSO) regression analyses were used to build an m7G methyltransferase-related miRNA risk prognostic model for TCGA-OSCC. Patients were stratified into high- and low-risk groups. The predictive and diagnostic accuracies of the risk prognostic model were further validated using Kaplan-Meier survival analysis, receiver operating characteristic (ROC) curve analysis, independent prognosis analysis, and nomogram plots. Finally, quantitative real-time polymerase chain reaction (qPCR) was used to validate the expression levels of m7G methyltransferase-related miRNAs in postoperative cancer and adjacent normal tissues from 60 patients with OSCC. Results: Through Cox and LASSO regression analysis, six candidate miRNAs (hsa-miR-338-3p, hsa-miR-1251-3p, hsa-miR-3129-5p, hsa-miR-4633-3p, hsa-miR-216a-3p, and hsa-miR-6503-3p) most relevant to the prognosis of patients with OSCC were identified to construct an m7G methyltransferase-related miRNA risk prognostic model. In this model, the overall survival (OS) of the high-risk group was significantly shorter than that of the low-risk group (P < 0.001). The model effectively predicted prognosis and served as an independent prognostic indicator for patients with OSCC. Compared with the low-risk group, the high-risk group exhibited a significantly increased capacity for immune cell infiltration (P < 0.05), while the activation and initiation abilities of immune cells were decreased. Finally, six m7G methyltransferase-related miRNAs were validated in OSCC tissue samples. Conclusion: The risk prognostic model based on six m7G methyltransferase-related miRNAs can predict the OS rate of patients with OSCC and has the potential to guide individualized treatment. This prognostic model is closely associated with immune cell infiltration in patients with OSCC.

背景:N7-甲基鸟苷(m7G)甲基转移酶和微RNA(miRNA)与肿瘤进展密切相关。然而,m7G甲基转移酶相关的miRNA在口腔鳞状细胞癌(OSCC)中作为预后标志物的作用尚未得到研究。本研究旨在探讨OSCC中的m7G甲基转移酶相关miRNA,建立基于m7G甲基转移酶相关miRNA的预后模型,研究其与免疫细胞浸润的相关性,并评估其潜在的预后价值。研究方法从癌症基因组图谱(TCGA)数据库中获取OSCC患者的转录和临床数据。利用TargetScan和miRWalk预测与m7G甲基转移酶相关的miRNA。随后,筛选出在 TCGA-OSCC 中差异表达的 m7G 甲基转移酶相关 miRNA。利用Cox和最小绝对收缩与选择算子(LASSO)回归分析建立了TCGA-OSCC的m7G甲基转移酶相关miRNA风险预后模型。患者被分为高风险组和低风险组。通过卡普兰-梅耶生存分析、接受者操作特征曲线分析、独立预后分析和提名图,进一步验证了风险预后模型的预测和诊断准确性。最后,利用实时定量聚合酶链反应(qPCR)验证了 60 例 OSCC 患者术后癌组织和邻近正常组织中 m7G 甲基转移酶相关 miRNA 的表达水平。结果显示通过Cox和LASSO回归分析,确定了与OSCC患者预后最相关的6个候选miRNA(hsa-miR-338-3p、hsa-miR-1251-3p、hsa-miR-3129-5p、hsa-miR-4633-3p、hsa-miR-216a-3p和hsa-miR-6503-3p),从而构建了m7G甲基转移酶相关miRNA风险预后模型。在该模型中,高风险组的总生存期(OS)明显短于低风险组(P < 0.001)。该模型能有效预测预后,是OSCC患者的独立预后指标。与低危组相比,高危组的免疫细胞浸润能力明显增强(P < 0.05),而免疫细胞的活化和启动能力下降。最后,在 OSCC 组织样本中验证了六种与 m7G 甲基转移酶相关的 miRNA。结论基于六个m7G甲基转移酶相关miRNA的风险预后模型可以预测OSCC患者的OS率,并有可能指导个体化治疗。该预后模型与 OSCC 患者的免疫细胞浸润密切相关。
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引用次数: 0
Jolkinolide B Inhibits Gastric Cancer Growth by Targeting the PANoptosis Molecular Switch Caspase-8. 乔尔金内酯 B 通过靶向泛凋亡分子开关 Caspase-8 抑制胃癌生长
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-30 eCollection Date: 2024-01-01 DOI: 10.7150/jca.101218
Chenhui Ma, Lei Gao, Kewei Song, Baohong Gu, Bofang Wang, Weigao Pu, Hao Chen

Background: To elucidate the mechanisms by which Jolkinolide B (JB), derived from Euphorbia fischeriana, suppresses gastric cancer (GC) development, given its known potent antitumor effects and the lack of detailed understanding of its impact and molecular processes in GC. Methods: The study utilized both cellular and animal models to investigate the effects of JB on GC. The GC cell lines AGS and MKN45 were used to assess JB's impact on cell growth, proliferation, migration, and invasion. Molecular techniques, including molecular docking and dynamics simulations, were employed to explore the binding interactions between JB and caspase-8. The inhibitor Z-IETD-FMK was used to examine the role of caspase-8 in JB-mediated PANoptosis. Xenograft tumor transplantation experiments were conducted to evaluate JB's effect on tumor growth and biotoxicity in vivo. Results: JB markedly inhibited the growth, proliferation, migration, and invasion of the AGS and MKN45 GC cell lines. It induced PANoptosis in GC cells by activating caspase-8, leading to increased expression of cleaved caspase-3/7 (apoptosis), GSDMD-N (pyroptosis), and p-RIPK1 and p-MLKL (necroptosis). Molecular docking and dynamics simulations revealed that JB binds effectively to caspase-8 with a binding free energy (ΔTotal) of -34.41 kcal/mol, suggesting specific binding-induced caspase-8 activation. The inhibition of caspase-8 by Z-IETD-FMK prevented JB-mediated PANoptosis. Additionally, JB significantly reduced tumor growth in xenograft models without causing biotoxicity. Conclusion: JB is a promising bioactive agent that inhibits gastric cancer growth through the activation of the PANoptosis pathway. This study highlights JB's potential as an effective therapeutic option for GC, underlining the importance of its binding interaction with caspase-8 and subsequent activation of apoptotic, pyroptotic, and necroptotic pathways.

背景:鉴于大戟科植物大戟内酯 B (JB) 已知具有强大的抗肿瘤作用,但对其在胃癌中的影响和分子过程缺乏详细了解,因此旨在阐明大戟内酯 B (JB) 抑制胃癌(GC)发展的机制。研究方法本研究利用细胞和动物模型来研究 JB 对 GC 的影响。GC 细胞系 AGS 和 MKN45 被用来评估 JB 对细胞生长、增殖、迁移和侵袭的影响。研究人员采用分子对接和动力学模拟等分子技术来探索 JB 与 caspase-8 之间的结合相互作用。抑制剂 Z-IETD-FMK 被用来研究 caspase-8 在 JB 介导的 PANoptosis 中的作用。进行了异种肿瘤移植实验,以评估 JB 对体内肿瘤生长和生物毒性的影响。结果显示JB 显著抑制了 AGS 和 MKN45 GC 细胞株的生长、增殖、迁移和侵袭。它通过激活 caspase-8诱导 GC 细胞的泛凋亡,导致裂解的 caspase-3/7(凋亡)、GSDMD-N(热凋亡)、p-RIPK1 和 p-MLKL (坏死)的表达增加。分子对接和动力学模拟显示,JB 能与 caspase-8 有效结合,其结合自由能(ΔTotal)为 -34.41 kcal/mol,表明特异性结合诱导了 caspase-8 的活化。Z-IETD-FMK 对 Caspase-8 的抑制阻止了 JB 介导的泛凋亡。此外,JB 还能显著降低异种移植模型中的肿瘤生长,且不会产生生物毒性。结论JB 是一种很有前景的生物活性剂,它能通过激活 PAN 细胞凋亡途径抑制胃癌生长。这项研究强调了 JB 作为胃癌有效治疗选择的潜力,并强调了其与 caspase-8 的结合相互作用以及随后激活凋亡、热凋亡和坏死途径的重要性。
{"title":"Jolkinolide B Inhibits Gastric Cancer Growth by Targeting the PANoptosis Molecular Switch Caspase-8.","authors":"Chenhui Ma, Lei Gao, Kewei Song, Baohong Gu, Bofang Wang, Weigao Pu, Hao Chen","doi":"10.7150/jca.101218","DOIUrl":"https://doi.org/10.7150/jca.101218","url":null,"abstract":"<p><p><b>Background:</b> To elucidate the mechanisms by which Jolkinolide B (JB), derived from Euphorbia fischeriana, suppresses gastric cancer (GC) development, given its known potent antitumor effects and the lack of detailed understanding of its impact and molecular processes in GC. <b>Methods:</b> The study utilized both cellular and animal models to investigate the effects of JB on GC. The GC cell lines AGS and MKN45 were used to assess JB's impact on cell growth, proliferation, migration, and invasion. Molecular techniques, including molecular docking and dynamics simulations, were employed to explore the binding interactions between JB and caspase-8. The inhibitor Z-IETD-FMK was used to examine the role of caspase-8 in JB-mediated PANoptosis. Xenograft tumor transplantation experiments were conducted to evaluate JB's effect on tumor growth and biotoxicity <i>in vivo</i>. <b>Results:</b> JB markedly inhibited the growth, proliferation, migration, and invasion of the AGS and MKN45 GC cell lines. It induced PANoptosis in GC cells by activating caspase-8, leading to increased expression of cleaved caspase-3/7 (apoptosis), GSDMD-N (pyroptosis), and p-RIPK1 and p-MLKL (necroptosis). Molecular docking and dynamics simulations revealed that JB binds effectively to caspase-8 with a binding free energy (ΔTotal) of -34.41 kcal/mol, suggesting specific binding-induced caspase-8 activation. The inhibition of caspase-8 by Z-IETD-FMK prevented JB-mediated PANoptosis. Additionally, JB significantly reduced tumor growth in xenograft models without causing biotoxicity. <b>Conclusion:</b> JB is a promising bioactive agent that inhibits gastric cancer growth through the activation of the PANoptosis pathway. This study highlights JB's potential as an effective therapeutic option for GC, underlining the importance of its binding interaction with caspase-8 and subsequent activation of apoptotic, pyroptotic, and necroptotic pathways.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 18","pages":"6038-6051"},"PeriodicalIF":3.3,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11493019/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142501040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In Silico Analysis Uncovers FOXA1 as a Potential Biomarker for Predicting Neoadjuvant Chemotherapy Response in Fine-Needle Aspiration Biopsies. 硅学分析发现 FOXA1 是预测细针抽吸活检中新辅助化疗反应的潜在生物标记物
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-30 eCollection Date: 2024-01-01 DOI: 10.7150/jca.101901
Zhenglang Yin, Jianfei Tao, Yanyan Liu, Haohao Chen, Kongwang Hu, Yao Wang, Maoming Xiong

Background: The preoperative identification of neoadjuvant chemotherapy (NAC) treatment responsiveness in breast cancer (BC) patients is advantageous for tailoring treatment regimens. There is a relative scarcity in the current research exploring NAC treatment responsive biomarkers using bulk sequencing data obtained from fine-needle aspiration (FNA). Materials and Methods: Limma was employed for the selection of differentially expressed genes. Additionally, WGCNA, machine learning, and Genetic Perturbation Similarity Analysis (GPSA) were utilized to identify key genes associated with NAC treatment response. ConsensusClusterPlus was employed for unsupervised clustering. Rt-qPCR and WB were conducted to assess gene expression and protein levels in clinical tissues and cell lines. The Seahorse XF96 Extracellular Flux Analyzer was utilized to evaluate Extracellular Acidification Rate (ECAR) and Oxygen Consumption Rate (OCR). The "pRRophetic" package was used for drug sensitivity prediction, while CB-Dock2 was applied for molecular docking and optimal pose presentation. Spatial transcriptomic analysis was based on the CROST database. Results: Eleven biomarkers were identified associated with NAC treatment response in BC patients, with FOXA1 identified as a pivotal hub gene among them. The expression levels of FOXA1 showed a significant positive correlation with genomic stability and a marked negative correlation with the homologous recombination deficiency (HRD) score. Downregulation of the FOXA1 gene resulted in reduced glycolysis in MCF-7 cells.Additionally, FOXA1 were found to serve as a biomarker for both NAC and PARP inhibitor treatment sensitivity in BC patients. Spatial transcriptomic analysis indicates significantly elevated infiltration of T follicular helper (T-FH) cells and mast cells surrounding tumors exhibiting high FOXA1 expression. Conclusion: In summary, our study involved the analysis of diverse sequencing datasets derived from various FNA samples to identify biomarkers sensitive to NAC, thereby offering novel insights into resources for future personalized clinical treatment strategies.

背景:术前确定乳腺癌(BC)患者对新辅助化疗(NAC)治疗的反应性有利于调整治疗方案。目前,利用细针穿刺术(FNA)获得的大量测序数据探索新辅助化疗反应性生物标志物的研究相对较少。材料与方法:采用 Limma 筛选差异表达基因。此外,还利用 WGCNA、机器学习和遗传扰动相似性分析(GPSA)来确定与 NAC 治疗反应相关的关键基因。ConsensusClusterPlus 用于无监督聚类。采用 Rt-qPCR 和 WB 评估临床组织和细胞系中的基因表达和蛋白水平。海马 XF96 细胞外通量分析仪用于评估细胞外酸化率(ECAR)和耗氧量(OCR)。pRRophetic "软件包用于药物敏感性预测,CB-Dock2用于分子对接和最佳姿势展示。空间转录组分析基于 CROST 数据库。结果研究发现11个生物标志物与BC患者的NAC治疗反应相关,其中FOXA1是关键的枢纽基因。FOXA1的表达水平与基因组稳定性呈显著正相关,与同源重组缺陷(HRD)评分呈明显负相关。FOXA1基因的下调导致MCF-7细胞中糖酵解减少。空间转录组分析表明,FOXA1高表达的肿瘤周围T滤泡辅助细胞(T-FH)和肥大细胞的浸润明显升高。结论总之,我们的研究涉及对来自各种 FNA 样本的不同测序数据集进行分析,以确定对 NAC 敏感的生物标志物,从而为未来个性化临床治疗策略的资源提供新的见解。
{"title":"In Silico Analysis Uncovers FOXA1 as a Potential Biomarker for Predicting Neoadjuvant Chemotherapy Response in Fine-Needle Aspiration Biopsies.","authors":"Zhenglang Yin, Jianfei Tao, Yanyan Liu, Haohao Chen, Kongwang Hu, Yao Wang, Maoming Xiong","doi":"10.7150/jca.101901","DOIUrl":"https://doi.org/10.7150/jca.101901","url":null,"abstract":"<p><p><b>Background:</b> The preoperative identification of neoadjuvant chemotherapy (NAC) treatment responsiveness in breast cancer (BC) patients is advantageous for tailoring treatment regimens. There is a relative scarcity in the current research exploring NAC treatment responsive biomarkers using bulk sequencing data obtained from fine-needle aspiration (FNA). <b>Materials and Methods:</b> Limma was employed for the selection of differentially expressed genes. Additionally, WGCNA, machine learning, and Genetic Perturbation Similarity Analysis (GPSA) were utilized to identify key genes associated with NAC treatment response. ConsensusClusterPlus was employed for unsupervised clustering. Rt-qPCR and WB were conducted to assess gene expression and protein levels in clinical tissues and cell lines. The Seahorse XF96 Extracellular Flux Analyzer was utilized to evaluate Extracellular Acidification Rate (ECAR) and Oxygen Consumption Rate (OCR). The \"pRRophetic\" package was used for drug sensitivity prediction, while CB-Dock2 was applied for molecular docking and optimal pose presentation. Spatial transcriptomic analysis was based on the CROST database. <b>Results:</b> Eleven biomarkers were identified associated with NAC treatment response in BC patients, with FOXA1 identified as a pivotal hub gene among them. The expression levels of FOXA1 showed a significant positive correlation with genomic stability and a marked negative correlation with the homologous recombination deficiency (HRD) score. Downregulation of the FOXA1 gene resulted in reduced glycolysis in MCF-7 cells.Additionally, FOXA1 were found to serve as a biomarker for both NAC and PARP inhibitor treatment sensitivity in BC patients. Spatial transcriptomic analysis indicates significantly elevated infiltration of T follicular helper (T-FH) cells and mast cells surrounding tumors exhibiting high FOXA1 expression. <b>Conclusion:</b> In summary, our study involved the analysis of diverse sequencing datasets derived from various FNA samples to identify biomarkers sensitive to NAC, thereby offering novel insights into resources for future personalized clinical treatment strategies.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 18","pages":"6052-6072"},"PeriodicalIF":3.3,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11493000/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142501038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Preoperative Serum Cystatin C as an Independent Prognostic Factor for Survival in Patients with Renal Cell Carcinoma. 术前血清胱抑素 C 是影响肾细胞癌患者存活率的独立预后因素
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-23 eCollection Date: 2024-01-01 DOI: 10.7150/jca.97711
Hui Ma, Peipei Wang, Zhao Hou, Huiyu Zhou, Dingyang Lv, Fan Cui, Weibing Shuang

Purpose: This study aims to evaluate the prognostic significance of preoperative serum cystatin C (Cys-C) in patients with renal cell carcinoma (RCC). Methods: We analyzed clinicopathological data and follow-up information of 624 RCC patients who underwent partial or radical nephrectomy at our institution. The optimal cutoff value of Cys-C was determined using X-tile software. Survival outcomes, including overall survival (OS) and cancer-specific survival (CSS), were evaluated using the Kaplan-Meier method and log-rank test. To avoid overfitting and collinearity, we used LASSO-based multivariable Cox regression analysis to identify independent predictors of OS and CSS. The predictive accuracy of the established model, including preoperative serum Cys-C, was evaluated using the time-dependent receiver operating characteristic (ROC) curves and the area under the curve (AUC). Results: The median follow-up period was 40 months. The optimal cutoff value of preoperative serum Cys-C levels was 0.95 mg/L. Compared with the low Cys-C group, patients in the high Cys-C group had significantly shorter OS and CSS. Multivariable Cox regression analysis indicated that elevated preoperative serum Cys-C level was an independent adverse predictor for RCC patients post-nephrectomy. After adjusting for all covariates, high preoperative serum Cys-C level was associated with worse OS (hazard ratio [HR]: 2.254; 95% confidence interval [CI]: 1.144, 4.439; P = 0.019) and CSS (HR: 3.621; 95% CI: 1.386, 9.456; P = 0.009). Time-dependent ROC analysis demonstrated that our model, including preoperative serum Cys-C, performed well in predicting accuracy of survival. Conclusions: Preoperative serum Cys-C level is an effective prognostic indicator for OS and CSS in RCC patients undergoing nephrectomy.

目的:本研究旨在评估肾细胞癌(RCC)患者术前血清胱抑素 C(Cys-C)的预后意义。研究方法我们分析了在本院接受部分或根治性肾切除术的 624 例 RCC 患者的临床病理数据和随访信息。使用 X-tile 软件确定了 Cys-C 的最佳临界值。采用 Kaplan-Meier 法和对数秩检验对包括总生存期(OS)和癌症特异性生存期(CSS)在内的生存结果进行了评估。为避免过度拟合和共线性,我们使用基于 LASSO 的多变量 Cox 回归分析来确定 OS 和 CSS 的独立预测因素。使用随时间变化的接收者操作特征曲线(ROC)和曲线下面积(AUC)评估了已建立模型(包括术前血清 Cys-C)的预测准确性。结果显示中位随访期为 40 个月。术前血清 Cys-C 水平的最佳临界值为 0.95 mg/L。与低 Cys-C 组相比,高 Cys-C 组患者的 OS 和 CSS 明显更短。多变量 Cox 回归分析表明,术前血清 Cys-C 水平升高是肾切除术后 RCC 患者的独立不良预测因素。调整所有协变量后,术前血清 Cys-C 水平高与较差的 OS 相关(危险比 [HR]:2.254;95% 置信区间 [CI]:1.144, 4.440):1.144,4.439;P = 0.019)和 CSS(HR:3.621;95% CI:1.386,9.456;P = 0.009)。时间依赖性 ROC 分析表明,我们的模型(包括术前血清 Cys-C)在预测生存准确性方面表现良好。结论术前血清 Cys-C 水平是肾切除术 RCC 患者 OS 和 CSS 的有效预后指标。
{"title":"Preoperative Serum Cystatin C as an Independent Prognostic Factor for Survival in Patients with Renal Cell Carcinoma.","authors":"Hui Ma, Peipei Wang, Zhao Hou, Huiyu Zhou, Dingyang Lv, Fan Cui, Weibing Shuang","doi":"10.7150/jca.97711","DOIUrl":"https://doi.org/10.7150/jca.97711","url":null,"abstract":"<p><p><b>Purpose:</b> This study aims to evaluate the prognostic significance of preoperative serum cystatin C (Cys-C) in patients with renal cell carcinoma (RCC). <b>Methods:</b> We analyzed clinicopathological data and follow-up information of 624 RCC patients who underwent partial or radical nephrectomy at our institution. The optimal cutoff value of Cys-C was determined using X-tile software. Survival outcomes, including overall survival (OS) and cancer-specific survival (CSS), were evaluated using the Kaplan-Meier method and log-rank test. To avoid overfitting and collinearity, we used LASSO-based multivariable Cox regression analysis to identify independent predictors of OS and CSS. The predictive accuracy of the established model, including preoperative serum Cys-C, was evaluated using the time-dependent receiver operating characteristic (ROC) curves and the area under the curve (AUC). <b>Results:</b> The median follow-up period was 40 months. The optimal cutoff value of preoperative serum Cys-C levels was 0.95 mg/L. Compared with the low Cys-C group, patients in the high Cys-C group had significantly shorter OS and CSS. Multivariable Cox regression analysis indicated that elevated preoperative serum Cys-C level was an independent adverse predictor for RCC patients post-nephrectomy. After adjusting for all covariates, high preoperative serum Cys-C level was associated with worse OS (hazard ratio [HR]: 2.254; 95% confidence interval [CI]: 1.144, 4.439; <i>P</i> = 0.019) and CSS (HR: 3.621; 95% CI: 1.386, 9.456; <i>P</i> = 0.009). Time-dependent ROC analysis demonstrated that our model, including preoperative serum Cys-C, performed well in predicting accuracy of survival. <b>Conclusions:</b> Preoperative serum Cys-C level is an effective prognostic indicator for OS and CSS in RCC patients undergoing nephrectomy.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 18","pages":"5978-5985"},"PeriodicalIF":3.3,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11493004/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142501043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification and Validation of a Prognostic Signature Based on Fibroblast Immune-related Genes to Predict the Prognosis and Therapeutic Response of renal clear cell carcinoma by Integrated Analysis of Single-Cell and Bulk RNA Sequencing Data. 通过综合分析单细胞和大容量RNA测序数据,鉴定和验证基于成纤维细胞免疫相关基因的预后特征,以预测肾透明细胞癌的预后和治疗反应
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-23 eCollection Date: 2024-01-01 DOI: 10.7150/jca.100194
Shuwen Zhang, Yuqian Yang, Liyi Zhang, Yijiang Liu, Zihun Guo, Jiajun Wu, Weijun Zhou, Zhengdong Hong, Wenxiong Zhang

Background: The importance of fibroblasts in cancer progression is becoming more acknowledged, particularly the significance of their immune-related genes. However, the precise roles these genes play in fibroblasts throughout tumor development remains unclear. Exploring how these genes function in advancing kidney renal clear cell carcinoma (KIRC) could provide answers to these uncertainties. Material and method: The Cancer Genome Atlas (TCGA) database served as the source of data for KIRC patients. We distinguished fibroblast immune-related genes (FIGs), which are used to construct risk score. Further analysis conducted including enrichment analysis, assessment of tumor mutation burden (TMB), evaluation of tumor microenvironment (TME), analysis of immune cell infiltration, and drug sensitivity prediction. Result: The risk score using 6 FIGs effectively predicts the outcomes for KIRC patients. Nomogram which is based on the risk score and clinical data, demonstrated superior predictive performance compared to the version without the risk score. Enrichment analysis identified that coagulation pathway predominates in high-risk group, the protein secretion pathway is prevalent in low-risk patients' cohort. The adverse prognosis in high-risk patient cohort could be linked to an elevated TMB. TME analysis showed that high-risk group's tumor tissues contain more immune and stromal cells. Furthermore, the amount of regulatory T cells increases with the risk score. Low-risk group response better to immunotherapy. Finally, RT-qPCR confirmed the differential expression of FIGs in KIRC patients. Conclusion: This risk score and nomogram are valuable tools assessing KIRC patients' prognosis. Poorer prognosis in high-risk categories may have relationship with activation of coagulation pathway and a higher TMB.

背景:成纤维细胞在癌症进展中的重要性日益得到认可,尤其是其免疫相关基因的重要性。然而,这些基因在成纤维细胞整个肿瘤发生过程中发挥的确切作用仍不清楚。探索这些基因在肾透明细胞癌(KIRC)进展过程中的功能,可以为这些不确定性提供答案。材料和方法:癌症基因组图谱(TCGA)数据库是 KIRC 患者的数据来源。我们对成纤维细胞免疫相关基因(FIGs)进行了区分,用于构建风险评分。进一步的分析包括富集分析、肿瘤突变负荷(TMB)评估、肿瘤微环境(TME)评估、免疫细胞浸润分析和药物敏感性预测。结果:使用 6 个 FIG 的风险评分能有效预测 KIRC 患者的预后。与没有风险评分的版本相比,基于风险评分和临床数据的提名图显示出更优越的预测性能。富集分析表明,高危人群主要通过凝血途径,而低危人群则主要通过蛋白质分泌途径。高危患者群的不良预后可能与 TMB 升高有关。TME分析显示,高危人群的肿瘤组织中含有更多的免疫细胞和基质细胞。此外,调节性T细胞的数量随着风险评分的增加而增加。低风险组对免疫疗法的反应更好。最后,RT-qPCR 证实了 FIGs 在 KIRC 患者中的不同表达。结论该风险评分和提名图是评估 KIRC 患者预后的重要工具。高风险组预后较差可能与凝血途径激活和 TMB 较高有关。
{"title":"Identification and Validation of a Prognostic Signature Based on Fibroblast Immune-related Genes to Predict the Prognosis and Therapeutic Response of renal clear cell carcinoma by Integrated Analysis of Single-Cell and Bulk RNA Sequencing Data.","authors":"Shuwen Zhang, Yuqian Yang, Liyi Zhang, Yijiang Liu, Zihun Guo, Jiajun Wu, Weijun Zhou, Zhengdong Hong, Wenxiong Zhang","doi":"10.7150/jca.100194","DOIUrl":"https://doi.org/10.7150/jca.100194","url":null,"abstract":"<p><p><b>Background</b>: The importance of fibroblasts in cancer progression is becoming more acknowledged, particularly the significance of their immune-related genes. However, the precise roles these genes play in fibroblasts throughout tumor development remains unclear. Exploring how these genes function in advancing kidney renal clear cell carcinoma (KIRC) could provide answers to these uncertainties. <b>Material and method</b>: The Cancer Genome Atlas (TCGA) database served as the source of data for KIRC patients. We distinguished fibroblast immune-related genes (FIGs), which are used to construct risk score. Further analysis conducted including enrichment analysis, assessment of tumor mutation burden (TMB), evaluation of tumor microenvironment (TME), analysis of immune cell infiltration, and drug sensitivity prediction. <b>Result</b>: The risk score using 6 FIGs effectively predicts the outcomes for KIRC patients. Nomogram which is based on the risk score and clinical data, demonstrated superior predictive performance compared to the version without the risk score. Enrichment analysis identified that coagulation pathway predominates in high-risk group, the protein secretion pathway is prevalent in low-risk patients' cohort. The adverse prognosis in high-risk patient cohort could be linked to an elevated TMB. TME analysis showed that high-risk group's tumor tissues contain more immune and stromal cells. Furthermore, the amount of regulatory T cells increases with the risk score. Low-risk group response better to immunotherapy. Finally, RT-qPCR confirmed the differential expression of FIGs in KIRC patients. <b>Conclusion</b>: This risk score and nomogram are valuable tools assessing KIRC patients' prognosis. Poorer prognosis in high-risk categories may have relationship with activation of coagulation pathway and a higher TMB.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 18","pages":"5942-5955"},"PeriodicalIF":3.3,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11493018/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142501036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrating Bulk and Single-cell RNA-seq to Construct a Macrophage-related Prognostic Model for Prognostic Stratification in Triple-negative Breast Cancer. 整合大量和单细胞 RNA-seq,构建巨噬细胞相关预后模型,用于三阴性乳腺癌的预后分层
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-23 eCollection Date: 2024-01-01 DOI: 10.7150/jca.101042
Hongmeng Zhao, Xuejie Zhou, Guixin Wang, Yue Yu, Yingxi Li, Zhaohui Chen, Wenbin Song, Liwei Zhao, Li Wang, Xin Wang, Xuchen Cao, Yao Tian

Background: Triple-negative breast cancer (TNBC) is a poor prognostic subtype of breast cancer due to limited treatment. Macrophage plays a critical role in tumor growth and survival. Our study intends to explore the heterogeneity of macrophage in TNBC and establish a macrophage-related prognostic model for TNBC prognostic stratification. Materials and Methods: Seurat package was conducted to analyze the single-cell RNA expression profilers. The cell types were identified by the markers derived from public research and online database. The cell-cell interactions were calculated by the CellChat package. Monocle package was used to visualize the cell trajectory of macrophages. The prognostic model was constructed by six macrophage-related genes after a series of selections. The expression of six genes were validated in normal and TNBC tissues. And several potential agents for high-risk TNBC patients were analyzed by Connectivity Map analysis. Results: Nine cell types were identified, and the macrophages were highly enriched in TNBC samples. five distinct subgroups of macrophage were identified. Notably, SPP1+ tumor-associated macrophages exhibited a poor prognosis. The prognostic model was constructed by HSPA6, LPL, IDO1, ALDH2, TK1, and QPCT with good predictive accuracy at 3-, 5- years overall survival for TNBC patients in both training and external test cohorts. Finally, several drugs were identified for the high-risk TNBC patients decided by model. Conclusion: Our study provides a valuable source for clarifying macrophage heterogeneity in TNBC, and a promising tool for prognostic risk stratification of TNBC.

背景:由于治疗手段有限,三阴性乳腺癌(TNBC)是预后较差的乳腺癌亚型。巨噬细胞在肿瘤的生长和存活中起着关键作用。我们的研究旨在探索巨噬细胞在 TNBC 中的异质性,并为 TNBC 预后分层建立一个与巨噬细胞相关的预后模型。材料与方法:采用Seurat软件包分析单细胞RNA表达谱。细胞类型由来自公共研究和在线数据库的标记物确定。细胞-细胞相互作用由 CellChat 软件包计算。Monocle软件包用于可视化巨噬细胞的细胞轨迹。经过一系列筛选,六个与巨噬细胞相关的基因构建了预后模型。六个基因在正常组织和 TNBC 组织中的表达得到了验证。并通过连接图分析了针对高危 TNBC 患者的几种潜在药物。结果共鉴定出九种细胞类型,巨噬细胞在 TNBC 样本中高度富集。值得注意的是,SPP1+肿瘤相关巨噬细胞的预后较差。通过HSPA6、LPL、IDO1、ALDH2、TK1和QPCT构建的预后模型对训练组和外部测试组中TNBC患者的3年、5年总生存期具有良好的预测准确性。最后,通过模型确定了几种针对高危 TNBC 患者的药物。结论我们的研究为阐明TNBC中巨噬细胞的异质性提供了宝贵的资料,也为TNBC的预后风险分层提供了有前途的工具。
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引用次数: 0
Application of target scanning combined with three-dimensional reconstruction in the diagnosis of early-stage lung adenocarcinoma. 靶向扫描结合三维重建在早期肺腺癌诊断中的应用。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-23 eCollection Date: 2024-01-01 DOI: 10.7150/jca.92408
Li Sun, Binbin Zhang, Pulin Li, Guanghe Fei, Ran Wang

Objective: This study aimed to assess the diagnostic value of target scanning combined with three-dimensional reconstruction in early-stage lung adenocarcinoma. Methods: A retrospective analysis was conducted on 2017 patients with pathologically confirmed early-stage lung adenocarcinoma who underwent thoracoscopic lobectomy at the First Affiliated Hospital of Anhui Medical University from September 2018 to May 2023. These patients were initially diagnosed using conventional spiral CT scanning, and the study explored the application of target scanning combined with three-dimensional reconstruction in the diagnosis of early-stage lung adenocarcinoma. Results: the pulmonary nodules were classified into three groups according to the pathological classification: Pre-Invasive lesion (PI), Microinvasive adenocarcinoma (MIA), and Invasive adenocarcinoma (IA), there were significant differences in the mean diameter of pulmonary nodules, the mean diameter of solid components, the proportion of solid components, pleural indentation, lobulation, spinous process, spiculation, and vascular convergence among the three groups. There were no significant differences between conventional spiral CT scanning and target scanning combined with three-dimensional reconstruction in terms of the number of cases with pure ground-glass nodules, mixed density nodules, pure solid nodules, the detection rate of vacuole signs, the CT value of the solid component and ground-glass component, and the maximum nodule diameter (P>0.05). However, target scanning combined with three-dimensional reconstruction detected a higher number of cases with lobulation signs, spinous process signs, pleural depression signs, burr signs, vessel convergence signs, and larger maximum diameters of the solid component compared to conventional spiral CT scanning (P<0.05). Conclusions: Target scanning combined with three-dimensional reconstruction provides more reliable imaging evidence for the diagnosis of early-stage lung adenocarcinoma, particularly in identifying specific signs and characterizing solid components.

研究目的本研究旨在评估靶向扫描结合三维重建对早期肺腺癌的诊断价值。方法:对2018年9月至2023年5月在安徽医科大学第一附属医院接受胸腔镜肺叶切除术的2017例病理确诊早期肺腺癌患者进行回顾性分析。这些患者均采用常规螺旋CT扫描进行初步诊断,研究探讨了靶向扫描结合三维重建在早期肺腺癌诊断中的应用。结果:根据病理分类,肺结节被分为三组:三组肺结节的平均直径、实性成分的平均直径、实性成分所占比例、胸膜压痕、分叶、棘突、棘突和血管汇聚均有显著差异。传统螺旋 CT 扫描与靶向扫描结合三维重建在纯磨玻璃结节、混合密度结节、纯实性结节的病例数、空泡征检出率、实性成分和磨玻璃成分的 CT 值以及结节最大直径方面均无明显差异(P>0.05)。然而,与传统螺旋 CT 扫描相比,靶扫描结合三维重建检测出的分叶状征、棘突征、胸膜凹陷征、毛刺征、血管汇聚征和实性成分最大直径更大的病例数更多(PConclusions:靶扫描结合三维重建可为早期肺腺癌的诊断提供更可靠的成像证据,尤其是在识别特殊征象和确定实性成分的特征方面。
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引用次数: 0
siRNAs Targeting Non-Human Species-Specific lncRNAs Trigger Cell Death in Human Colorectal Cancer Cells. 靶向非人类物种特异性 lncRNA 的 siRNA 触发人类结直肠癌细胞死亡
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-09-23 eCollection Date: 2024-01-01 DOI: 10.7150/jca.99462
Wan-Ying Feng, Jun-Xiang Zeng, Yan-Ru Chen, Zhe-Ping Fang, Yi Gao, Wei-Jie Zhou

Species-specific long non-coding RNAs (lncRNAs) possess numerous unknown functions. We have recently reported that short interfering RNAs (siRNAs) designed to target mouse-specific lncRNAs caused cell death exclusively in human cancer cells, sparing normal human cells and mouse cancer cells. However, it is uncertain whether other non-human species-specific lncRNAs could also be applied as sequential targets for designing anti-tumor therapeutic siRNAs. In this research, we showed that siRNAs targeting rat or zebrafish-specific lncRNAs could exert similar cytotoxic effects against human colorectal cancer (CRC) cells while leaving normal human cells unaffected. Mechanistic investigations revealed that these siRNAs prompted apoptosis or pyroptosis in human CRC cells by triggering an IRF3-independent immune response against exogenous dsRNAs, based on the expression of protein gasdermin E (GSDME). Our study demonstrates that utilizing siRNAs to target non-human species-specific lncRNAs can trigger cell death in human CRC cells, indicating that non-human species-specific lncRNAs could serve as a promising reservoir for target libraries when designing anti-tumor siRNAs.

物种特异性长非编码 RNA(lncRNA)具有许多未知功能。我们最近报告说,针对小鼠特异性 lncRNA 设计的短干扰 RNAs(siRNAs)只会导致人类癌细胞的细胞死亡,而正常人细胞和小鼠癌细胞则不受影响。然而,其他非人类物种特异性的 lncRNA 是否也能作为设计抗肿瘤治疗 siRNA 的连续靶点尚不确定。在这项研究中,我们发现靶向大鼠或斑马鱼特异性 lncRNA 的 siRNAs 对人类结直肠癌(CRC)细胞具有类似的细胞毒性作用,而正常人细胞不受影响。机理研究发现,这些 siRNAs 可通过触发针对外源 dsRNAs 的不依赖 IRF3 的免疫反应(基于蛋白质 gasdermin E (GSDME) 的表达),促使人 CRC 细胞凋亡或热凋亡。我们的研究表明,利用siRNAs靶向非人类物种特异性lncRNAs能引发人类CRC细胞死亡,这表明非人类物种特异性lncRNAs可作为设计抗肿瘤siRNAs靶标库的一个有前途的储备库。
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引用次数: 0
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