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Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals MMP mediated expression patterns by distinct tumor microenvironment immune profiles in cervical cancer. 单细胞 RNA-seq 和大量 RNA-seq 的综合分析揭示了宫颈癌中不同肿瘤微环境免疫图谱介导的 MMP 表达模式。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.96429
He Wang, Xinbo Li, Siyu Zhou, Wendi Guo, Zhao Wang, Linlin Sun, Zhongyi Zhao, Yanyan Han, Sanyuan Zhang, Jieping Lv, Yi Ping, Zhe Wang

Background: Few studies have analyzed the effect of matrix metalloproteinase (MMP) expression patterns on the tumor microenvironment (TME) during development of cervical cancer (CC). Methods: We elucidated the landscape and score of MMP expression in CC using single-cell RNA sequencing (scRNA-seq) and RNA sequencing datasets. Further, we aimed the MMPscore to probe the infiltration of immune cells. Further, MMP expression was measured by quantitative Real-Time Polymerase Chain Reaction (qRT-PCR). Results: We found MMPs were cell-type specific expressed in diverse types of CC cells, regulating the relative pathways of CC progression. Two distinct MMP expression patterns that associated infiltrated tumor microenvironment (TME) were identified. We discovered MMP expression patterns can predict the stage of tumor, subtype, stromal activity in the TME, genetic variation, and patient outcome. Patients with high MMPscore benefited from significantly better treatment and clinical outcomes. Conclusion: These results indicate high MMPscore in diverse cell types may regulate immune response and improve the survival of patients with CC, which assist in developing more effective immunization strategies.

背景:很少有研究分析基质金属蛋白酶(MMP)表达模式对宫颈癌(CC)发病过程中肿瘤微环境(TME)的影响。研究方法我们利用单细胞RNA测序(scRNA-seq)和RNA测序数据集阐明了MMP在宫颈癌中的表达格局和得分。此外,我们还利用 MMPscore 来探测免疫细胞的浸润情况。此外,我们还通过实时聚合酶链式反应(qRT-PCR)对 MMP 的表达进行了定量检测。结果显示我们发现MMPs在不同类型的CC细胞中表达具有细胞类型特异性,调节着CC进展的相对途径。我们发现两种不同的 MMP 表达模式与肿瘤微环境(TME)浸润有关。我们发现,MMP表达模式可以预测肿瘤的分期、亚型、TME中的基质活性、基因变异和患者预后。MMP评分高的患者治疗效果和临床预后明显更好。结论这些结果表明,不同细胞类型中的高MMPscore可调节免疫反应,提高CC患者的生存率,有助于制定更有效的免疫策略。
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引用次数: 0
Sushi Domain Containing 2 Dysfunction Contributes to Cancer Progression in Patients with Bladder Cancer. Sushi Domain Containing 2 功能障碍导致膀胱癌患者的癌症进展。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.97537
Wei-Ting Kuo, Yi-Chen Lee, Yi-Fang Yang, Ching-Feng Cheng, Ching-Jiunn Tseng, Kuo-Wang Tsai

Bladder cancer is the most prevalent type of cancer in Taiwan, and therefore, enhancing the diagnostic sensitivity of biomarkers for early-stage tumors and identifying therapeutic targets to improve patient survival rates are essential. Although Sushi Domain Containing 2 (SUSD2) dysfunction has been identified in several types of human cancer, its biological role in bladder cancer remains unclear. Analysis of The Cancer Genome Atlas revealed significantly higher expression of SUSD2 mRNA in bladder cancer tissues than in adjacent normal tissues. This elevated expression of SUSD2 significantly correlated with pathological stage (p = 0.029), pN stage (p < 0.001), and pM stage (p = 0.047). Univariate analysis revealed that high SUSD2 expression was associated with decreased overall survival (crude hazard ratio = 1.70, 95% confidence interval = 1.13-2.56, p = 0.01). Multivariate analysis revealed a significant correlation between high SUSD2 expression and poor survival outcomes (adjusted hazard ratio = 1.53, 95% confidence interval = 1.01-2.31, p = 0.043). IHC analysis revealed a significant correlation between elevated SUSD2 protein levels and unfavorable pathological stages (p < 0.001). SUSD2 suppression significantly reduced the proliferation, colony formation, and invasion of bladder cancer cells. In addition, cell cycle analysis revealed that SUSD2 knockdown induced G2/M phase arrestin bladder cancer cells. Tumor Immune Estimation Resource analysis indicated that expression of SUSD2 was significantly associated with macrophage infiltration and M2 macrophage polarization in bladder cancer. In addition, miR-383-5p directly targeted the 3'UTR of SUSD2, with its ectopic expression inhibiting the growth and motility of bladder cancer cells. Our study revealed that miR-383-5p/SUSD2 axis dysfunction may contribute to a poor prognosis for bladder cancer by affecting cell growth, metastasis, and the tumor microenvironment.

膀胱癌是台湾发病率最高的癌症,因此,提高早期肿瘤生物标志物的诊断灵敏度和确定治疗靶点以提高患者生存率至关重要。虽然在多种类型的人类癌症中发现了 SUSD2(Sushi Domain Containing 2)功能障碍,但其在膀胱癌中的生物学作用仍不清楚。癌症基因组图谱分析显示,膀胱癌组织中 SUSD2 mRNA 的表达明显高于邻近的正常组织。SUSD2 表达的升高与病理分期(p = 0.029)、pN 分期(p < 0.001)和 pM 分期(p = 0.047)显著相关。单变量分析显示,SUSD2的高表达与总生存率下降有关(粗危险比=1.70,95%置信区间=1.13-2.56,p=0.01)。多变量分析显示,SUSD2高表达与不良生存结果之间存在显著相关性(调整后危险比=1.53,95%置信区间=1.01-2.31,P=0.043)。IHC分析显示,SUSD2蛋白水平升高与不利病理分期之间存在显著相关性(p < 0.001)。抑制 SUSD2 能明显减少膀胱癌细胞的增殖、集落形成和侵袭。此外,细胞周期分析表明,SUSD2敲除可诱导膀胱癌细胞G2/M期停滞。肿瘤免疫估算资源分析表明,SUSD2的表达与膀胱癌中巨噬细胞浸润和M2巨噬细胞极化显著相关。此外,miR-383-5p直接靶向SUSD2的3'UTR,其异位表达可抑制膀胱癌细胞的生长和运动。我们的研究发现,miR-383-5p/SUSD2轴功能障碍可能会影响细胞生长、转移和肿瘤微环境,从而导致膀胱癌预后不良。
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引用次数: 0
Robotic radical hysterectomy for cervical cancer: current trends and controversies. 宫颈癌机器人根治性子宫切除术:当前趋势与争议。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.99705
Jeeyeon Kim, Ha Kyun Chang, Jiheum Paek, Hyeon Ji Park, Hye Yeon Moon

Minimally invasive radical hysterectomy (MIRH) is widely performed as a treatment for early-stage cervical cancer. However, in 2018, a randomized controlled trial (RCT) called the Laparoscopic Approach to Cervical Cancer (LACC) trial showed that MIRH had poorer oncologic outcomes compared to laparotomy. Since then, several clinical studies have supported this finding, and most surgeons now perform MIRH with limited surgical indications. However, most of the reported studies evaluated laparoscopic radical hysterectomy rather than robotic radical hysterectomy (RRH). Robotic surgery has advantages for complex surgical procedures in the deep and narrow pelvic cavity in cervical cancer, making it necessary to evaluate the benefits and potential harms of RRH individually. Based on this systematic review, RRH is a safe and effective alternative to abdominal approach for early-stage cervical cancer. RRH offers significant perioperative benefits, including reduced blood loss, shorter hospital stays, and fewer complications, without compromising oncologic outcomes such as overall survival and progression-free survival. Additionally, surgeons should aim to minimize tumor cell spillage into the peritoneal cavity by eliminating the use of uterine manipulators or vaginal colpotomy. Ongoing RCTs will reveal whether we can perform RRH without oncologic compromise in cervical cancer.

微创根治性子宫切除术(MIRH)作为一种治疗早期宫颈癌的方法被广泛采用。然而,2018 年,一项名为 "宫颈癌腹腔镜治疗方法(LACC)"的随机对照试验(RCT)显示,与开腹手术相比,微创根治性子宫切除术的肿瘤治疗效果较差。此后,又有多项临床研究证实了这一结论,现在大多数外科医生都在有限的手术适应症下实施 MIRH。然而,大多数报道的研究评估的是腹腔镜根治性子宫切除术,而不是机器人根治性子宫切除术(RRH)。机器人手术对于宫颈癌盆腔深部和狭窄部位的复杂手术具有优势,因此有必要单独评估RRH的益处和潜在危害。根据本系统综述,RRH 是一种安全有效的早期宫颈癌腹腔手术替代方法。RRH 具有显著的围手术期优势,包括减少失血量、缩短住院时间和减少并发症,同时不会影响总生存期和无进展生存期等肿瘤学结果。此外,外科医生应避免使用子宫操作器或阴道结肠切除术,以尽量减少肿瘤细胞溢入腹腔。正在进行的 RCT 将揭示我们能否在不影响宫颈癌肿瘤学的情况下实施 RRH。
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引用次数: 0
Association of MTHFR gene polymorphisms with non-Hodgkin lymphoma risk: Evidence from 31 articles. MTHFR 基因多态性与非霍奇金淋巴瘤风险的关系:来自 31 篇文章的证据。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.99351
Gang Wang, Yuluo Wu, Zuolei Jing, Ruiting Wen, Yuanrui Song, Yin Feng, Guangru Li, Xiaopeng Zou, Gaoxiang Huang, Zhirong Jia, Yunmiao Guo, Zhigang Yang

Background: Methylenetetrahydrofolate reductase (MTHFR) gene polymorphisms, particularly C677T and A1298C, have been implicated in various cancers, including non-Hodgkin lymphoma (NHL); however, their association with NHL risk remains inconclusive. Methods: We conducted an updated meta-analysis to assess the relationship between MTHFR gene polymorphisms (C677T and A1298C) and NHL risk. Relevant studies were identified through systematic literature searches in multiple databases. Pooled odds ratios (ORs) with 95% confidence intervals (CIs) were calculated to evaluate the strength of the associations. Results: The meta-analysis included 32 studies (8222 cases vs. 12956 controls) for MTHFR C677T and 26 studies (6930 cases vs. 11611 controls) for the A1298C polymorphism. Our meta-analysis revealed no significant associations between MTHFR gene polymorphisms (C677T and A1298C) and NHL risk. However, subgroup analysis stratified by ethnicity and NHL subtype yielded interesting findings for the C677T polymorphism. Specifically, in the subgroup analysis of Caucasians, the C677T polymorphism was significantly associated with NHL risk (heterozygous: OR=1.16, 95% CI=1.02-1.32; allele comparison: OR=1.07, 95% CI=1.01-1.13). Furthermore, in the analysis stratified by NHL subtype, the C677T polymorphism was significantly associated with increased follicular lymphoma (FL) risk (homozygous: OR=1.25, 95% CI=1.02-1.53; recessive: OR=1.28, 95% CI=1.06-1.56). False-positive result possibility (FPRP) analysis verified that the association of the MTHFR C677T polymorphism with NHL risk for Caucasians and FL subtypes was a true positive and deserves attention. We also determined that the C677T polymorphism is an expression quantitative trait locus (eQTL) since it is associated with MTHFR gene expression. Conclusion: There was no overall association between MTHFR gene polymorphisms (C677T and A1298C) and NHL risk, but stratified analyses revealed significant associations in specific subgroups. While meta-analyses inherently build upon existing studies, our work distinguishes itself by incorporating recent data, applying rigorous analytical techniques, and providing more evidence of the MTHFR C677T polymorphism as an eQTL.

背景:亚甲基四氢叶酸还原酶(MTHFR)基因多态性,尤其是 C677T 和 A1298C,已被认为与包括非霍奇金淋巴瘤(NHL)在内的多种癌症有关;然而,它们与 NHL 风险的关系仍无定论。研究方法我们进行了一项最新的荟萃分析,以评估 MTHFR 基因多态性(C677T 和 A1298C)与 NHL 风险之间的关系。通过在多个数据库中进行系统性文献检索,确定了相关研究。计算了汇总的几率比(ORs)和 95% 的置信区间(CIs),以评估相关性的强度。结果荟萃分析包括 32 项关于 MTHFR C677T 的研究(8222 例病例与 12956 例对照)和 26 项关于 A1298C 多态性的研究(6930 例病例与 11611 例对照)。我们的荟萃分析表明,MTHFR基因多态性(C677T和A1298C)与NHL风险之间没有明显的关联。然而,按种族和 NHL 亚型进行的亚组分析对 C677T 多态性产生了有趣的发现。具体来说,在白种人亚组分析中,C677T 多态性与 NHL 风险显著相关(杂合子:OR=1.16,95% NHL:A1298C):OR=1.16,95% CI=1.02-1.32;等位基因比较:OR=1.07,95% CI=1.01-1.13)。此外,在按 NHL 亚型分层的分析中,C677T 多态性与滤泡性淋巴瘤(FL)风险增加显著相关(同基因:OR=1.25,95% CI=1.02-1.53;隐性:OR=1.28,95% CI=1.06-1.56)。假阳性结果可能性(FPRP)分析证实,白种人和 FL 亚型的 MTHFR C677T 多态性与 NHL 风险的相关性为真阳性,值得关注。我们还确定,C677T 多态性是一个表达定量性状位点(eQTL),因为它与 MTHFR 基因的表达有关。结论MTHFR基因多态性(C677T和A1298C)与NHL风险之间没有整体关联,但分层分析显示在特定亚组中存在显著关联。虽然荟萃分析本质上是建立在现有研究的基础上,但我们的工作与众不同,它纳入了最新数据,应用了严格的分析技术,并提供了更多证据证明 MTHFR C677T 多态性是一种 eQTL。
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引用次数: 0
CDH3 Is an Effective Serum Biomarker of Colorectal Cancer Distant Metastasis Patients. CDH3是结直肠癌远处转移患者的有效血清生物标志物
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98337
Jiayin Song, Yu Jin, Shuoqing Fan, Yue Wei, Dong Dong, Li Jia, Shuxuan Fan, Aimin Zhang, Wei Zhou, Wenna Jiang, Li Ren

Few robust biomarkers are available for distant metastatic colorectal cancer (CRC) patients. Aberrant high expression of CDH3 has been reported in advanced CRC patients, but the value of CDH3 as a biomarker for the diagnosis and prognosis of distant metastatic CRC patients remains to be evaluated. In this study, we explored the serum levels of CDH3 in different stages of CRC patients and sought to determine whether serum CDH3 serves as an independent biomarker for distant metastatic CRC patients. We analyzed the serum CDH3 levels by ELISA in a cohort of CRCs (n=96) and normal controls (n=28). We compared the serum CDH3 levels between normal controls and different stages of CRCs. As a potential diagnostic marker of distant metastatic CRC, the specificity and sensitivity of serum CDH3 were evaluated. Multivariate analysis was also performed to determine whether serum CDH3 was an independent risk factor. Moreover, the changes of serum CDH3 levels were monitored and analyzed before and after palliative chemotherapy. Serum levels of CDH3, CA24-2, CA19-9, CA72-4, and CEA were significantly elevated in distant metastatic CRCs. CA24-2 (r=0.24, P=0.01), CA19-9 (r=0.20, P=0.03), CA72-4 (r=0.64, P<0.0001), and CEA (r=0.31, P=0.0012) all had a certain correlation with CDH3. After three cycles of palliative chemotherapy, levels of CDH3, CA24-2, CA19-9, CA72-4, and CEA of partial response CRCs were reduced to 38.8% (95% confidence interval [CI]: 30.95%-53.77%), 57.73% (95% CI: 2.085%-73.83%), 50.33% (95% CI: 9.935%-79.42%), 74.74% (95% CI: 25.21%-88.00%), and 59.16% (95% CI: 12.65%-83.56%) of baseline, respectively. The areas under the receiver operating characteristic curves of CDH3, CA24-2, CA19-9, CA72-4, and CEA with chemotherapy response were 0.900, 0.597, 0.635, 0.608, and 0.507, respectively. Serum CDH3 is an effective serum biomarker for the diagnosis of distant metastatic CRCs and monitoring response to palliative chemotherapy in distant metastatic CRCs.

对于远处转移的结直肠癌(CRC)患者,几乎没有可靠的生物标志物。有报道称 CDH3 在晚期 CRC 患者中异常高表达,但 CDH3 作为远处转移 CRC 患者诊断和预后的生物标志物的价值仍有待评估。在这项研究中,我们探讨了不同阶段 CRC 患者血清中 CDH3 的水平,并试图确定血清 CDH3 是否可作为远处转移 CRC 患者的独立生物标记物。我们通过ELISA分析了一组CRC患者(96人)和正常对照组(28人)的血清CDH3水平。我们比较了正常对照组和不同分期的 CRC 之间的血清 CDH3 水平。作为远处转移性 CRC 的潜在诊断标志物,我们评估了血清 CDH3 的特异性和敏感性。我们还进行了多变量分析,以确定血清 CDH3 是否是一个独立的风险因素。此外,研究人员还监测并分析了姑息化疗前后血清 CDH3 水平的变化。远处转移性 CRC 的血清 CDH3、CA24-2、CA19-9、CA72-4 和 CEA 水平显著升高。CA24-2(r=0.24,P=0.01)、CA19-9(r=0.20,P=0.03)、CA72-4(r=0.64,Pr=0.31,P=0.0012)均与CDH3有一定的相关性。经过三个周期的姑息化疗后,部分反应 CRC 的 CDH3、CA24-2、CA19-9、CA72-4 和 CEA 水平降低至 38.8%(95% 置信区间[CI]:30.95%-53.77%)、57.73%(95% CI:2.085%-73.83%)、50.33%(95% CI:9.935%-79.42%)、74.74%(95% CI:25.21%-88.00%)和59.16%(95% CI:12.65%-83.56%)。CDH3、CA24-2、CA19-9、CA72-4和CEA与化疗反应的接收者操作特征曲线下面积分别为0.900、0.597、0.635、0.608和0.507。血清CDH3是诊断远处转移性CRC和监测远处转移性CRC姑息化疗反应的有效血清生物标志物。
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引用次数: 0
Tuberculosis to lung cancer: application of tuberculosis signatures in identification of lung adenocarcinoma subtypes and marker screening. 肺结核与肺癌:肺结核特征在肺腺癌亚型鉴定和标志物筛选中的应用。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.97898
Fan Feng, Wanjie Xu, Chaoqun Lian, Luyao Wang, Ziqiang Wang, Huili Chen, Xiaojing Wang, Hongtao Wang, Jing Zhang

Background: There is an association between LUAD and TB, and TB increases the risk of lung adenocarcinogenesis. However, the role of TB in the development of lung adenocarcinoma has not been clarified. Methods: DEGs from TB and LUAD lung samples were obtained to identify TB-LUAD-shared DEGs. Consensus Clustering was performed on the TCGA cohort to characterize unique changes in TB transcriptome-derived lung adenocarcinoma subtypes. Prognostic models were constructed based on TB signatures to explore the characterization of subgroups. Finally, experimental validation and single-cell analysis of potential markers were performed. Results: We characterized three molecular subtypes with unique clinical features, cellular infiltration, and pathway change manifestations. We constructed and validated TB-related Signature in six cohorts. TB-related Signature has characteristic alterations, and can be used as an effective predictor of immunotherapy response. Prognostically relevant novel markers KRT80, C1QTNF6, and TRPA1 were validated by RT-qPCR. The association between KRT80 and lung adenocarcinoma disease progression was verified in Bulk transcriptome and single-cell transcriptome. Conclusion: For the first time, a comprehensive bioinformatics analysis of tuberculosis signatures was used to identify subtypes of lung adenocarcinoma. The TB-related Signature predicted prognosis and identified potential markers. This result reveals a potential pathogenic association of tuberculosis in the progression of lung adenocarcinoma.

背景:肺腺癌与肺结核之间存在关联,肺结核会增加肺腺癌的发病风险。然而,肺结核在肺腺癌发病中的作用尚未明确。研究方法从肺结核和肺腺癌样本中获取 DEGs,以确定肺结核-肺腺癌共有的 DEGs。在 TCGA 队列中进行共识聚类,以确定肺结核转录组衍生肺腺癌亚型的独特变化。根据肺结核特征构建了预后模型,以探索亚组的特征。最后,对潜在标记物进行了实验验证和单细胞分析。结果:我们发现了三种具有独特临床特征、细胞浸润和通路变化表现的分子亚型。我们在六个队列中构建并验证了结核病相关 Signature。结核病相关特征具有特征性改变,可作为免疫疗法反应的有效预测指标。我们通过 RT-qPCR 验证了与预后相关的新标记物 KRT80、C1QTNF6 和 TRPA1。KRT80与肺腺癌疾病进展之间的关联在大体转录组和单细胞转录组中得到了验证。结论这是首次利用结核病特征的综合生物信息学分析来确定肺腺癌的亚型。肺结核相关特征预测了预后并确定了潜在的标记物。这一结果揭示了肺结核与肺腺癌进展的潜在致病关系。
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引用次数: 0
Analysis of ZNF208 Polymorphisms on the Clinicopathologic Characteristics of Asian Patients with Hepatocellular Carcinoma. ZNF208多态性对亚洲肝细胞癌患者临床病理特征的影响分析
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98520
Yi-Chung Chien, Hsiang-Lin Lee, Whei-Ling Chiang, Li-Yuan Bai, Yu-Ju Hung, Shuo-Chueh Chen, Hsiang-Ling Wang, Shun-Fa Yang, Yung-Luen Yu

Hepatocellular carcinoma (HCC), a major form of liver cancer, is characterized by high lethality and a multifactorial etiology that includes hepatitis virus infections, lifestyle factors, and genetic predispositions. This study aimed to explore the impact of ZNF208 gene polymorphisms on the clinicopathological features of Taiwanese HCC patients, focusing on three specific single nucleotide polymorphisms (SNPs): rs2188971, rs2188972, and rs8105767. Our cohort consisted of 438 HCC patients and 1193 control individuals. Clinical staging was determined using the tumor/node/metastasis (TNM) system, and various clinical indicators were collected. Our analysis revealed a statistically significant increase in ZNF208 expression in HCC patients compared to controls, indicating a potential role in HCC progression. Although no substantial association was observed between ZNF208 SNPs and increased HCC risk, specific clinical features such as distant metastasis and vascular invasion showed significant associations with these SNPs, suggesting their influence on disease aggressiveness. Demographic analyses highlighted the importance of factors like alcohol consumption and viral hepatitis markers in HCC. Our study underscores the complexity of genetic influences on HCC, with ZNF208 polymorphisms potentially affecting tumor progression and patient outcomes.

肝细胞癌(HCC)是肝癌的一种主要形式,其特点是致死率高,病因包括肝炎病毒感染、生活方式因素和遗传易感性等多因素。本研究旨在探讨 ZNF208 基因多态性对台湾 HCC 患者临床病理特征的影响,重点研究三个特定的单核苷酸多态性(SNP):rs2188971、rs2188972 和 rs8105767。我们的研究队列由 438 名 HCC 患者和 1193 名对照者组成。采用肿瘤/结节/转移(TNM)系统确定临床分期,并收集各种临床指标。我们的分析表明,与对照组相比,HCC 患者中 ZNF208 的表达有统计学意义的显著增加,这表明 ZNF208 在 HCC 的进展过程中可能发挥作用。虽然在ZNF208 SNPs与HCC风险增加之间没有观察到实质性关联,但远处转移和血管侵犯等特定临床特征与这些SNPs有显著关联,表明它们对疾病的侵袭性有影响。人口统计学分析强调了饮酒和病毒性肝炎标记物等因素在 HCC 中的重要性。我们的研究强调了遗传因素对 HCC 影响的复杂性,ZNF208 多态性可能会影响肿瘤的进展和患者的预后。
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引用次数: 0
Anoectochilusroxburghii extract down-regulates METTL3 to reduce RNA m6A on WNT pathway and inhibit melanoma cancer cell metastasis. 黑木耳提取物能下调 METTL3,从而减少 WNT 通路上的 RNA m6A,抑制黑色素瘤癌细胞转移。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.92212
Yingyi Ye, Yazhi Tian, Jinchun Chen, Jingjun Zhao

Characterized by high invasiveness and expansive growth, melanoma progression is intricately regulated, with RNA m6A modifications playing a pivotal role. Among these regulators, METTL3 modulates the migratory capabilities of melanoma cells, specifically by modifying the RNA m6A of UCK2. The extract of Anoectochilusroxburghii, a plant known for its broad-spectrum antitumour properties, has been shown to effectively curb the invasion and migration of melanoma cells and impede tumour growth. The primary mechanism involves the downregulation of METTL3 expression. By doing so, the Anoectochilus roxburghii extract reduces the m6A level on the mRNA of UCK2, accelerating UCK2 mRNA degradation and, consequently, decreasing UCK2 expression. This process, in turn, suppresses gene expression within the Wnt/β-catenin pathway, contributing to its antimelanoma effects.

黑色素瘤具有高侵袭性和扩张性生长的特点,其发展过程受到错综复杂的调控,其中 RNA m6A 的修饰起着关键作用。在这些调控因子中,METTL3 特别通过修饰 UCK2 的 RNA m6A 来调节黑色素瘤细胞的迁移能力。Anoectochilusroxburghii 是一种具有广谱抗肿瘤特性的植物,其提取物已被证明能有效抑制黑色素瘤细胞的侵袭和迁移,阻碍肿瘤生长。其主要机制是下调 METTL3 的表达。Anoectochilus roxburghii 提取物可降低 UCK2 mRNA 的 m6A 水平,加速 UCK2 mRNA 降解,从而降低 UCK2 的表达。这一过程反过来又抑制了 Wnt/β-catenin 通路中的基因表达,从而产生了抗黑色素瘤的作用。
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引用次数: 0
Establishment of Chemotherapy Prediction Model Based on Hypoxia-Related Genes for Oral Cancer. 根据缺氧相关基因建立口腔癌化疗预测模型
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.96654
Chuhuan Zhou, Hanqi Jia, Nan Jiang, Jingli Zhao, Xinrong Nan

Purpose: Identify the hypoxia genes related to chemotherapy resistance of oral cancer, and construct a chemotherapy response model by machine learning algorithm. Methods: 72 oral cancer patients with complete chemotherapy records and chemotherapy reactions were screened from the Cancer Genome Atlas (TCGA) database. According to the chemotherapy reactions, they were divided into chemotherapy sensitive group and chemotherapy resistant group. The differential genes were screened by Limma package. Then the chemotherapy response gene were screened by univariate analysis. Based on the gene expression profile of chemotherapy response, four machine learning algorithms were used to construct the prediction model of chemotherapy response. The core genes were screened by lasso regression analysis. Finally, the prognosis and immune infiltration of the core genes were analyzed. The results were verified by immunohistochemistry (IHC). Results: We obtained 22 hypoxia related differential genes. Univariate analysis found 6 Chemotherapy response genes. Machine learning algorithms show that XGBoost have the best predictive performance for chemotherapy response. ALDOA is the core gene of chemotherapy resistance. Conclusions: Successfully constructed a chemotherapy prediction model for oral cancer by machine learning algorithm. Under hypoxia, the high expression of ALDOA is associated with chemotherapy resistance in oral cancer.

目的:发现与口腔癌化疗耐药相关的缺氧基因,并通过机器学习算法构建化疗反应模型。方法:从癌症基因组图谱(TCGA)数据库中筛选出72例有完整化疗记录和化疗反应的口腔癌患者。根据化疗反应分为化疗敏感组和化疗耐药组。使用 Limma 软件包筛选差异基因。然后通过单变量分析筛选出化疗反应基因。根据化疗反应基因表达谱,使用四种机器学习算法构建化疗反应预测模型。通过拉索回归分析筛选出核心基因。最后,分析了核心基因的预后和免疫浸润情况。结果经免疫组化(IHC)验证。结果我们获得了 22 个与缺氧相关的差异基因。单变量分析发现了 6 个化疗反应基因。机器学习算法显示,XGBoost 对化疗反应的预测效果最好。ALDOA是化疗耐药的核心基因。结论利用机器学习算法成功构建了口腔癌化疗预测模型。在缺氧条件下,ALDOA的高表达与口腔癌的化疗耐药有关。
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引用次数: 0
Evaluation of ENG/CD105 expression, methylation, immuno-response, and cordycepin (CD) regulation as a novel biomarker of breast invasive carcinoma (BRCA). 将 ENG/CD105 的表达、甲基化、免疫反应和虫草素 (CD) 调节作为乳腺浸润癌 (BRCA) 的新型生物标记物进行评估。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-13 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98767
Dabing Li, Meiling Zheng, Wenqian Zhang, Jiayue He, Lianmei Zhang, Qi Tan, Mazaher Maghsoudloo, Kemeng Liu, Ting Li, Ranbin Yao, Chunli Wei, Jingliang Cheng, Junjiang Fu

ENG/CD105 encodes a vascular endothelial glycoprotein and plays a crucial role in modulating angiogenesis. However, the significance of ENG expression, DNA methylation, immuno-response, and cordycepin (CD) regulation as diagnostic, prognostic, and therapeutic markers for breast invasive carcinoma (BRCA) remains unclear. As a result, ENG is decreased in BRCA tissues compared with corresponding healthy tissues. Five isoforms were found, and the utilization for ENG isoform (ENG-002) was the highest, suggesting its potential involvement in important roles in BRCA. ENG DNA was frequently altered in most types of cancer, and overall survival (OS) for mutant ENG was significantly longer than for wild-type cases. High expressions of ENG remarkably correlate with long relapse-free survival (RFS) for breast cancer (BC). Additionally, the ENG methylation level was higher in BRCA tissues compared with matched healthy tissues. The ENG expression and DNA methylation showed a significantly reverse correlation, demonstrating that ENG methylation may be a regulatory mechanism. By constructing diagnostic and prognostic models of ENG methylation for BRCA, we found four CpGs (CpG sites) that ranked with high importance. High methylation for cg14185922 of ENG in BRCA tissues showed shorter OS (high risk), indicating that ENG CpGs' methylation has potential as a diagnostic and prognostic biomarker for BRCA. Moreover, ENG might be a novel target for tumor immune response and immunotherapy in pancancer, including BC. CD, an adenosine analog and anti-cancer agent, increased ENG levels in a dose-dependent manner in animal models. This suggests that CD repressed BC growth and metastasis, at least partially through increasing the expression of the tumor suppressor gene ENG. Thus, our study successfully evaluated ENG/CD105 expression, DNA methylation, immune response, and CD regulation, which act as a novel diagnostic, prognostic, and therapeutic biomarker for BRCA. This research also fills critical knowledge gaps in this ENG/cancer field and highlights ENG's potential importance for the diagnosis, prognosis, and treatment of BRCA.

ENG/CD105编码一种血管内皮糖蛋白,在调节血管生成方面起着至关重要的作用。然而,ENG 的表达、DNA 甲基化、免疫反应和虫草素(CD)调节作为乳腺浸润癌(BRCA)的诊断、预后和治疗标志物的意义仍不清楚。因此,与相应的健康组织相比,ENG 在 BRCA 组织中的含量降低。研究发现了五种同工酶,其中ENG同工酶(ENG-002)的利用率最高,这表明它可能在BRCA中扮演重要角色。在大多数类型的癌症中,ENG DNA经常发生改变,突变型ENG的总生存期(OS)明显长于野生型病例。ENG的高表达与乳腺癌(BC)较长的无复发生存期(RFS)明显相关。此外,与匹配的健康组织相比,BRCA组织中的ENG甲基化水平更高。ENG表达与DNA甲基化呈显著反向相关,这表明ENG甲基化可能是一种调控机制。通过构建ENG甲基化对BRCA的诊断和预后模型,我们发现有四个CpGs(CpG位点)具有很高的重要性。在 BRCA 组织中,ENG 的 cg14185922 的高甲基化显示了较短的 OS(高风险),这表明 ENG CpGs 的甲基化具有作为 BRCA 诊断和预后生物标志物的潜力。此外,ENG 可能是胰腺癌(包括 BC)的肿瘤免疫反应和免疫疗法的新靶点。CD是一种腺苷类似物和抗癌剂,在动物模型中能以剂量依赖的方式增加ENG水平。这表明,CD至少部分通过增加肿瘤抑制基因ENG的表达来抑制BC的生长和转移。因此,我们的研究成功地评估了ENG/CD105的表达、DNA甲基化、免疫反应和CD调控,它们可作为BRCA的新型诊断、预后和治疗生物标志物。这项研究还填补了ENG/癌症领域的重要知识空白,并强调了ENG对BRCA的诊断、预后和治疗的潜在重要性。
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引用次数: 0
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Journal of Cancer
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