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PD-1 Inhibitors Combined with Chemotherapy versus Re-irradiation/chemoradiotherapy for Unresectable Locally Recurrent T3-4 Nasopharyngeal Carcinoma: A Retrospective Study. PD-1抑制剂联合化疗与再放疗/化学放疗治疗不可切除的局部复发性T3-4鼻咽癌:一项回顾性研究。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-26 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98775
Tong-Xin Liu, Quan-Quan Sun, Yong-Hong Hua, Chang-Juan Tao, Feng Jiang

Objective: To evaluate the efficacy, toxicity, and long-term outcomes of PD1 inhibitors plus chemotherapy versus re-irradiation/chemoradiotherapy in patients with unresectable locally recurrent T3-4 nasopharyngeal carcinoma (NPC). Methods: A retrospective analysis was conducted on 42 patients with recurrent nasopharyngeal cancer (NPC) after receiving immunochemotherapy or re-irradiation between February 2018 and May 2022 in Zhejiang Cancer Hospital. Overall survival (OS), progression-free survival (PFS), local recurrence-free survival (LRFS), and distant metastasis-free survival (DMFS) were determined using the Kaplan-Meier method, log-rank test, and Cox proportional hazard regression. Results: With a median follow-up duration of 28.7 months (ranging from 7.2 to 63.9 months), the 3-year OS rate was 23.3% in the re-irradiotherapy (RI) group (N = 24) and 59.6% in the immunochemotherapy (IC) group (N = 18) (p = 0.042). The 3-year PFS, LRFS, and DMFS rates were not significantly different between the two groups (PFS: 45.3% vs. 62.6%, P = 0.482; LRFS: 54.4% vs. 62.6%, P =0.891; DMFS: 89.8% vs. 100.0%, P = 0.489). The univariate analysis revealed that regimen (HR: 0.354, 95% CI: 0.130-0.962, P = 0.042) was significantly correlated with OS. Multivariate analysis also showed that treatment regimen (HR: 0.329, 95% CI: 0.12-0.970, P =0.044) was the only significant prognostic factor associated with OS. The most common late toxicities in the RI group were xerostomia, deafness, and nasopharyngeal necrosis. Of these, nasopharyngeal necrosis was present in 16 patients (66.7%) and in 10 patients (41.7%) at a grade 3 or above. Nasopharyngeal necrosis is the main cause of death in the RI group. In contrast, in the IC group, grade 3 or higher immune-related adverse events or late adverse events were not observed. Conclusions: For unresectable locally recurrent NPC, re-irradiation is an effective treatment; nevertheless, the survival obtains are usually surpassed by serious late complications. For these individuals, chemotherapy in addition to an anti-PD-1 checkpoint inhibitor may be a helpful course of treatment.

目的评估PD1抑制剂加化疗与再放疗/化学放疗对不可切除的局部复发T3-4鼻咽癌(NPC)患者的疗效、毒性和长期预后。研究方法对浙江省肿瘤医院2018年2月至2022年5月期间接受免疫化疗或再放疗后复发的42例鼻咽癌(NPC)患者进行回顾性分析。采用Kaplan-Meier法、log-rank检验和Cox比例危险回归法测定总生存期(OS)、无进展生存期(PFS)、无局部复发生存期(LRFS)和无远处转移生存期(DMFS)。结果显示中位随访时间为28.7个月(从7.2个月到63.9个月不等),再次放疗(RI)组(24人)的3年OS率为23.3%,免疫化疗(IC)组(18人)的3年OS率为59.6%(P=0.042)。两组患者的 3 年 PFS、LRFS 和 DMFS 率无显著差异(PFS:45.3% vs. 62.6%,P = 0.482;LRFS:54.4% vs. 62.6%,P = 0.891;DMFS:89.8% vs. 100.0%,P = 0.489)。单变量分析显示,治疗方案(HR:0.354,95% CI:0.130-0.962,P = 0.042)与OS显著相关。多变量分析也显示,治疗方案(HR:0.329,95% CI:0.12-0.970,P =0.044)是与OS相关的唯一重要预后因素。RI 组最常见的晚期毒性反应是口腔干燥、耳聋和鼻咽部坏死。其中,16 名患者(66.7%)出现鼻咽坏死,10 名患者(41.7%)为 3 级或以上。鼻咽坏死是 RI 组患者死亡的主要原因。相比之下,在 IC 组未观察到 3 级或以上免疫相关不良事件或后期不良事件。结论对于无法切除的局部复发性鼻咽癌,再次放射治疗是一种有效的治疗方法;然而,严重的晚期并发症通常会影响患者的存活率。对于这些患者,化疗和抗PD-1检查点抑制剂可能是一种有效的治疗方法。
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引用次数: 0
Unveiling disulfidptosis-related genes in HBV-associated hepatocellular carcinoma: an integrated study incorporating transcriptome and Mendelian randomization analyses. 揭示 HBV 相关肝细胞癌中的二硫化相关基因:一项结合转录组和孟德尔随机分析的综合研究。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-26 eCollection Date: 2024-01-01 DOI: 10.7150/jca.93194
Xilong Wang, Ke Xiao, Zhipu Liu, Li Wang, Zhaogang Dong, Hongxing Wang, Yuhui Wang

Disulfidptosis, a recently unveiled mechanism of demise, has been linked to an unfavorable prognosis in the context of hepatocellular carcinoma (HCC). However, few studies have focused on the causal link between disulfidptosis and HBV-related HCC (HBV-HCC). In this study, the Mendelian randomization (MR) analysis demonstrated that the risk of HCC increased with increasing genetic susceptibility to HBV, and the genetic changes of disulfidptosis were significantly associated with the increased risk of HBV-HCC. Within both the TCGA and GEO cohorts, it is possible to accurately forecast the prognosis of HBV-HCC by utilizing a risk score that is derived from a combination of GYS1, RPN1, SLC7A11, LRPPRC and CAPZB genes. GYS1, a potential therapeutic target for HBV-HCC, exhibits a remarkable positive correlation with immune infiltration and MSI when compared to other molecules. Furthermore, we demonstrated that silencing GYS1 effectively inhibits the tumor proliferation and metastasis of HBV-HCC in vitro and in vivo. Overall, this study expands the understanding of the potential roles of disulfidptosis in HBV-HCC and highlights GYS1 as a promising target for HBV-HCC.

二硫化硫是一种最近才被发现的致死机制,它与肝细胞癌(HCC)的不良预后有关。然而,很少有研究关注二硫化硫与 HBV 相关 HCC(HBV-HCC)之间的因果关系。在这项研究中,孟德尔随机化(MR)分析表明,HCC 的风险随着 HBV 遗传易感性的增加而增加,而二硫化硫的遗传变化与 HBV-HCC 风险的增加显著相关。在 TCGA 和 GEO 队列中,通过利用 GYS1、RPN1、SLC7A11、LRPPRC 和 CAPZB 基因组合得出的风险评分,可以准确预测 HBV-HCC 的预后。GYS1 是 HBV-HCC 的潜在治疗靶点,与其他分子相比,GYS1 与免疫浸润和 MSI 呈显著正相关。此外,我们还证实沉默 GYS1 能有效抑制 HBV-HCC 在体外和体内的肿瘤增殖和转移。总之,这项研究拓宽了人们对二硫化硫在 HBV-HCC 中潜在作用的认识,并强调 GYS1 是治疗 HBV-HCC 的一个有前景的靶点。
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引用次数: 0
Bioinformatic Analyses and Integrated Machine Learning to Predict prognosis and therapeutic response Based on E3 Ligase-Related Genes in colon cancer. 基于结肠癌 E3 连接酶相关基因的生物信息分析和综合机器学习预测预后和治疗反应
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98723
Lunxi Liang, Xiao Liang, Xueke Yu, Wanting Xiang

Purpose: Colorectal cancer is the third most common cause of cancer death worldwide. We probed the correlations between E3 ubiquitin ligase (E3)-related genes (ERGs) and colon cancer prognosis and immune responses. Methods: Gene expression profiles and clinical data of patients with colon cancer were acquired from the TCGA, GTEx, GSE17537 and GSE29621 databases. ERGs were identified by coexpression analysis. WGCNA and differential expression analysis were subsequently conducted. Consensus clustering identified two molecular clusters. Differential analysis of the two clusters and Cox regression were then conducted. A prognostic model was constructed based on 10 machine learning algorithms and 92 algorithm combinations. The CIBERSORT, ssGSEA and TIMER algorithms were used to estimate immune infiltration. The OncoPredict algorithm and The Cancer Immunome Atlas (TCIA) predicted susceptibility to chemotherapeutic and targeted drugs and immunotherapy sensitivity. CCK-8, scratch-wound and RT‒PCR assays were subsequently conducted. Results: Two ERG-associated clusters were identified. The prognosis and immune function of patients in cluster A were superior to those of patients in cluster B. We constructed a prognostic model with perfect predictive capability and validated it in internal and external colon cancer datasets. We discovered significant discrepancies in immune infiltration and immune checkpoints between different risk groups. The group with high-risk had a reduced half-maximal inhibitory concentration (IC50) for some routine antitumor drugs and reduced susceptibility to immunotherapy. In vitro experiments demonstrated that the ectopic expression of PRELP inhibited the migration and proliferation of CRC cells. Conclusions: In summary, we identified novel molecular subtypes and developed a prognostic model, which will help a lot in the advancement of better forecasting and therapeutic approaches.

目的:结直肠癌是全球第三大常见癌症死因。我们研究了 E3 泛素连接酶(E3)相关基因(ERGs)与结肠癌预后和免疫反应之间的相关性。研究方法从TCGA、GTEx、GSE17537和GSE29621数据库获取结肠癌患者的基因表达谱和临床数据。通过共表达分析确定了ERG。随后进行了 WGCNA 和差异表达分析。共识聚类确定了两个分子群。然后对这两个群组进行了差异分析和 Cox 回归。基于 10 种机器学习算法和 92 种算法组合构建了预后模型。CIBERSORT、ssGSEA和TIMER算法用于估计免疫浸润。OncoPredict算法和癌症免疫组图谱(TCIA)预测了化疗和靶向药物的敏感性以及免疫疗法的敏感性。随后进行了 CCK-8、划痕-伤口和 RT-PCR 检测。结果显示发现了两个与ERG相关的集群。我们构建了一个具有完美预测能力的预后模型,并在内部和外部结肠癌数据集中进行了验证。我们发现,不同风险组之间的免疫浸润和免疫检查点存在明显差异。高危人群对一些常规抗肿瘤药物的半数最大抑制浓度(IC50)降低,对免疫疗法的敏感性降低。体外实验表明,异位表达 PRELP 可抑制 CRC 细胞的迁移和增殖。结论:总之,我们发现了新的分子亚型,并建立了一个预后模型,这将对更好的预测和治疗方法的发展有很大帮助。
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引用次数: 0
Research progress of epithelial-mesenchymal transformation-related transcription factors in peritoneal metastases. 腹膜转移瘤中上皮-间质转化相关转录因子的研究进展。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98409
Lei Wang, Xiaobei Peng, Chang Ma, Lin Hu, Min Li, Yuhong Wang

Metastasis is the leading cause of mortality in patients with malignant tumors, particularly characterized by peritoneal metastases originating from gastric, ovarian, and colorectal cancers. Regarded as the terminal phase of tumor progression, peritoneal metastasis presents limited therapeutic avenues and is associated with a dismal prognosis for patients. The epithelial-mesenchymal transition (EMT) is a crucial phenomenon in which epithelial cells undergo significant changes in both morphology and functionality, transitioning to a mesenchymal-like phenotype. This transition plays a pivotal role in facilitating tumor metastasis, with transcription factors being key mediators of EMT's effects. Consequently, we provide a retrospective summary of the efforts to identify specific targets among EMT-related transcription factors, aimed at modulating the onset and progression of peritoneal metastatic cancer. This summary offers vital theoretical underpinnings for developing treatment strategies against peritoneal metastasis.

转移是恶性肿瘤患者死亡的主要原因,尤其是胃癌、卵巢癌和结肠直肠癌引起的腹膜转移。腹膜转移被视为肿瘤发展的终末阶段,治疗途径有限,患者预后不佳。上皮-间质转化(EMT)是上皮细胞在形态和功能上发生显著变化、向间质样表型转化的重要现象。这种转变在促进肿瘤转移方面起着关键作用,而转录因子是 EMT 作用的关键介质。因此,我们回顾总结了为确定 EMT 相关转录因子的特定靶点所做的努力,目的是调节腹膜转移癌的发生和发展。这一总结为制定腹膜转移治疗策略提供了重要的理论基础。
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引用次数: 0
TRMT10C gene polymorphisms confer hepatoblastoma susceptibility: evidence from a seven-center case-control study. TRMT10C 基因多态性赋予肝母细胞瘤易感性:来自七中心病例对照研究的证据。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98555
Yanfei Liu, Jinhong Zhu, Xianqiang Wang, Wenli Zhang, Yong Li, Zhonghua Yang, Jiao Zhang, Jiwen Cheng, Li Li, Suhong Li, Jing He, Jun Bian

N1-methyladenosine (m1A) is a reversible epigenetic modification of RNAs. Aberrant m1A modification levels due to dysregulation of m1A regulators have been observed in multiple cancers. tRNA methyltransferase 10C (TRMT10C) can install m1A in RNAs; however, its role in hepatoblastoma remains unknown. We conducted this study to identify causal polymorphisms in the TRMT10C gene for hepatoblastoma susceptibility in a cohort of Chinese children (313 cases vs. 1446 controls). The genotypes of four potential functional polymorphisms (rs7641261 C>T, rs2303476 T>C, rs4257518 A>G, and rs3762735 C>G) were determined in participants using TaqMan real-time PCR. The associations of these polymorphisms with hepatoblastoma susceptibility were estimated by logistic regression analysis adjusted for age and sex. All four polymorphisms were significantly associated with hepatoblastoma risk. In particular, under the recessive genetic model, these polymorphisms conferred an increased risk of hepatoblastoma: rs7641261 C>T [adjusted odds ratio (OR)=1.64, 95% confidence interval (CI)=1.04-2.58, P=0.033], rs2303476 T>C (adjusted OR=1.87, 95% CI=1.16-3.02, P=0.010), rs4257518 A>G (adjusted OR=1.45, 95% CI=1.09-1.94, P=0.012), and rs3762735 C>G (adjusted OR=3.83, 95% CI=2.15-6.82, P<0.0001). Combined analysis revealed that kids had an increased risk of developing hepatoblastoma if they harbored at least one risk genotype (adjusted OR=1.94, 95% CI=1.48-2.54, P<0.0001). In addition, the combined risk effects of the four SNPs persisted across all the subgroups. We identified four hepatoblastoma susceptibility loci in the TRMT10C gene. Identifying more disease-causing loci may facilitate the development of genetic marker panels to predict individuals' hepatoblastoma predisposition.

N1-甲基腺苷(m1A)是 RNA 的一种可逆表观遗传修饰。tRNA甲基转移酶10C(TRMT10C)可在RNA中安装m1A,但它在肝母细胞瘤中的作用尚不清楚。我们在一组中国儿童(313 例病例与 1446 例对照)中进行了这项研究,以确定 TRMT10C 基因中与肝母细胞瘤易感性相关的多态性。研究人员使用 TaqMan 实时 PCR 测定了四个潜在功能性多态性(rs7641261 C>T、rs2303476 T>C、rs4257518 A>G 和 rs3762735 C>G)的基因型。这些多态性与肝母细胞瘤易感性的关系通过逻辑回归分析进行了估计,并对年龄和性别进行了调整。所有四种多态性都与肝母细胞瘤风险有显著相关性。特别是,在隐性遗传模型下,这些多态性会增加肝母细胞瘤的风险:rs7641261 C>T [调整后的几率比(OR)=1.64,95% 置信区间(CI)=1.04-2.58,P=0.033]、rs2303476 T>C(调整后 OR=1.87,95% CI=1.16-3.02,P=0.010)、rs4257518 A>G(调整后 OR=1.45,95% CI=1.09-1.94,P=0.012)和 rs3762735 C>G(调整后 OR=3.83,95% CI=2.15-6.82,PPTRMT10C 基因)。确定更多的致病位点可能有助于开发基因标记板,以预测个体的肝母细胞瘤易感性。
{"title":"<i>TRMT10C</i> gene polymorphisms confer hepatoblastoma susceptibility: evidence from a seven-center case-control study.","authors":"Yanfei Liu, Jinhong Zhu, Xianqiang Wang, Wenli Zhang, Yong Li, Zhonghua Yang, Jiao Zhang, Jiwen Cheng, Li Li, Suhong Li, Jing He, Jun Bian","doi":"10.7150/jca.98555","DOIUrl":"10.7150/jca.98555","url":null,"abstract":"<p><p>N1-methyladenosine (m<sup>1</sup>A) is a reversible epigenetic modification of RNAs. Aberrant m<sup>1</sup>A modification levels due to dysregulation of m<sup>1</sup>A regulators have been observed in multiple cancers. tRNA methyltransferase 10C (TRMT10C) can install m<sup>1</sup>A in RNAs; however, its role in hepatoblastoma remains unknown. We conducted this study to identify causal polymorphisms in the <i>TRMT10C</i> gene for hepatoblastoma susceptibility in a cohort of Chinese children (313 cases vs. 1446 controls). The genotypes of four potential functional polymorphisms (rs7641261 C>T, rs2303476 T>C, rs4257518 A>G, and rs3762735 C>G) were determined in participants using TaqMan real-time PCR. The associations of these polymorphisms with hepatoblastoma susceptibility were estimated by logistic regression analysis adjusted for age and sex. All four polymorphisms were significantly associated with hepatoblastoma risk. In particular, under the recessive genetic model, these polymorphisms conferred an increased risk of hepatoblastoma: rs7641261 C>T [adjusted odds ratio (OR)=1.64, 95% confidence interval (CI)=1.04-2.58, <i>P</i>=0.033], rs2303476 T>C (adjusted OR=1.87, 95% CI=1.16-3.02, <i>P</i>=0.010), rs4257518 A>G (adjusted OR=1.45, 95% CI=1.09-1.94, <i>P</i>=0.012), and rs3762735 C>G (adjusted OR=3.83, 95% CI=2.15-6.82, <i>P</i><0.0001). Combined analysis revealed that kids had an increased risk of developing hepatoblastoma if they harbored at least one risk genotype (adjusted OR=1.94, 95% CI=1.48-2.54, <i>P</i><0.0001). In addition, the combined risk effects of the four SNPs persisted across all the subgroups. We identified four hepatoblastoma susceptibility loci in the <i>TRMT10C</i> gene. Identifying more disease-causing loci may facilitate the development of genetic marker panels to predict individuals' hepatoblastoma predisposition.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 16","pages":"5396-5402"},"PeriodicalIF":3.3,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11375554/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154163","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification and Validation of MYADM as a Novel Prognostic Marker Related to EMT in ESCC. 将 MYADM 鉴定和验证为 ESCC 中与 EMT 相关的新型预后标记物
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.88767
Qiuxing Yang, Bo Cai, Shudong Zhu, Guomei Tai, Aiguo Shen

Background: Esophageal squamous cell carcinoma (ESCC), one of the most aggressive gastrointestinal malignancies, remains an enormous challenge in terms of medical treatment and prognostic improvement. Based on the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases in R language, the myeloid-associated differentiation marker (MYADM) was confirmed using bioinformatics analysis and experimental verification. MYADM is upregulated in multiple cancer types; however, the oncogenic mechanism by which MYADM promotes ESCC remains largely unknown. Methods: In the present study, we used weighted gene coexpression network analysis to filter four hub genes (AKAP12, ITGA1, JAM2, and MYADM) in GSE45670 and GSE23400 that are related to the malignant progression of ESCC. Transcription factors and target miRNAs of the hub genes were predicted using the TarBase and JASPRAR databases, respectively, and a regulatory network was established. MYADM was selected based on the analysis of expression differences and prognostic value in ESCC. Next, we confirmed the level of MYADM in ESCC samples using immunohistochemistry of the tissue microarray. The molecular mechanisms of MYADM were further elucidated by experimental analyses, including Transwell assays, wound healing assays, and CCK8. Results: The correlation between MYADM levels and the clinical data of patients with ESCC was confirmed, including tumor differentiation, the node and metastasis stage, T stage, lymphatic metastasis, and postoperative distant metastasis. MYADM was significantly upregulated in ESCC and positively correlated with overall survival. MYADM induced cell proliferation, migration, invasion, and wound healing via the epithelial to mesenchymal transition (EMT) pathway in multiple experiments. Moreover, our results supported the hypothesis that MYADM promotes EMT during paclitaxel resistance. Conclusion: MYADM is closely correlated with ESCC progression, metastasis, and paclitaxel resistance and could be regarded as a novel biomarker and therapeutic target for ESCC patients.

背景:食管鳞状细胞癌(ESCC)是侵袭性最强的胃肠道恶性肿瘤之一,在治疗和改善预后方面仍面临巨大挑战。基于基因表达总库(GEO)和癌症基因组图谱(TCGA)数据库,使用 R 语言,通过生物信息学分析和实验验证,确认了髓相关分化标志物(MYADM)。MYADM在多种癌症类型中上调;然而,MYADM促进ESCC的致癌机制在很大程度上仍然未知。研究方法在本研究中,我们利用加权基因共表达网络分析筛选了 GSE45670 和 GSE23400 中与 ESCC 恶性进展相关的四个枢纽基因(AKAP12、ITGA1、JAM2 和 MYADM)。利用 TarBase 和 JASPRAR 数据库分别预测了枢纽基因的转录因子和靶 miRNA,并建立了调控网络。根据对MYADM在ESCC中的表达差异和预后价值的分析,我们选择了MYADM。接下来,我们利用组织芯片的免疫组化技术确认了 ESCC 样本中的 MYADM 水平。通过Transwell实验、伤口愈合实验和CCK8等实验分析进一步阐明了MYADM的分子机制。结果证实了MYADM水平与ESCC患者临床数据的相关性,包括肿瘤分化、结节和转移分期、T分期、淋巴转移和术后远处转移。MYADM在ESCC中明显上调,并与总生存率呈正相关。在多个实验中,MYADM通过上皮到间质转化(EMT)途径诱导细胞增殖、迁移、侵袭和伤口愈合。此外,我们的结果支持了 MYADM 在紫杉醇耐药过程中促进 EMT 的假设。结论MYADM与ESCC的进展、转移和紫杉醇耐药密切相关,可被视为ESCC患者的新型生物标记物和治疗靶点。
{"title":"Identification and Validation of MYADM as a Novel Prognostic Marker Related to EMT in ESCC.","authors":"Qiuxing Yang, Bo Cai, Shudong Zhu, Guomei Tai, Aiguo Shen","doi":"10.7150/jca.88767","DOIUrl":"10.7150/jca.88767","url":null,"abstract":"<p><p><b>Background:</b> Esophageal squamous cell carcinoma (ESCC), one of the most aggressive gastrointestinal malignancies, remains an enormous challenge in terms of medical treatment and prognostic improvement. Based on the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases in R language, the myeloid-associated differentiation marker (MYADM) was confirmed using bioinformatics analysis and experimental verification. MYADM is upregulated in multiple cancer types; however, the oncogenic mechanism by which MYADM promotes ESCC remains largely unknown. <b>Methods:</b> In the present study, we used weighted gene coexpression network analysis to filter four hub genes (AKAP12, ITGA1, JAM2, and MYADM) in GSE45670 and GSE23400 that are related to the malignant progression of ESCC. Transcription factors and target miRNAs of the hub genes were predicted using the TarBase and JASPRAR databases, respectively, and a regulatory network was established. MYADM was selected based on the analysis of expression differences and prognostic value in ESCC. Next, we confirmed the level of MYADM in ESCC samples using immunohistochemistry of the tissue microarray. The molecular mechanisms of MYADM were further elucidated by experimental analyses, including Transwell assays, wound healing assays, and CCK8. <b>Results:</b> The correlation between MYADM levels and the clinical data of patients with ESCC was confirmed, including tumor differentiation, the node and metastasis stage, T stage, lymphatic metastasis, and postoperative distant metastasis. MYADM was significantly upregulated in ESCC and positively correlated with overall survival. MYADM induced cell proliferation, migration, invasion, and wound healing via the epithelial to mesenchymal transition (EMT) pathway in multiple experiments. Moreover, our results supported the hypothesis that MYADM promotes EMT during paclitaxel resistance. <b>Conclusion:</b> MYADM is closely correlated with ESCC progression, metastasis, and paclitaxel resistance and could be regarded as a novel biomarker and therapeutic target for ESCC patients.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 16","pages":"5351-5366"},"PeriodicalIF":3.3,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11375559/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative analysis of adhesion virulence protein FadA from gut-associated bacteria of colorectal cancer patients (F. nucleatum) and healthy individuals (E. cloacae). 大肠癌患者肠道相关细菌(F. nucleatum)和健康人肠道相关细菌(E. cloacae)粘附毒力蛋白 FadA 的比较分析。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98951
Nadia Hussain, Fatima Muccee, Naeem Mahmood Ashraf, Tayyaba Afsar, Fohad Mabood Husain, Arslan Hamid, Suhail Razak

Background: Colorectal cancer (CRC) is a gastrointestinal disease linked with GIT microbial dysbiosis. The present study has targeted the comparative analysis of virulent factor FadA from gut-associated bacteria of CRC patients (F. nucleatum) and healthy individuals (E. cloacae). Methods: For this purpose, FadA protein sequences of fifteen strains of F. nucleatum and four strains of E. cloacae, were retrieved from the UniProt database. These sequences were analysed through VirulentPred, PSLpred, ProtParam, PFP-FunDSeqE, PROTEUS Structure Prediction Server, SWISS-MODEL, SAVES validation server, MEME suite 5.5.0, CAVER Web tool, Webserver VaxinPAD, HPEPDOCK and HDOCK servers. Results: FadA protein from F. nucleatum was found to exhibit significant differences as compared to E. nucleatum i.e. it exhibited helical configuration, cytoplasmic, periplasmic, outer-membrane and extracellular localisation, 2D structure comprising of 70-96% helix, 0% beta-sheet, 4-30% coils and 17-20 signal peptide residues, hydrophilicity, strongly acidic character and smaller number of antigenic epitopes. In contrast, FadA protein from E. nucleatum was found to have globular 3D configuration, cytoplasmic localisation, 2D structure (30-56% helix, 12-21% beta-sheet, 33-50% coils and 43 signal peptide residues), highly hydrophobic, slightly acidic and more number of antigenic epitopes. Docking analyses of virulent factors revealed their high binding affinities with previously reported inhibitory peptide and FAD-approved drug COX2. Conclusion: The wide range of differences not only provided us the reason for the role of FadA protein as a virulent factor in F. nucleatum but also might help us in designing virulent FadA protein inhibiting strategies including peptide-based vaccine adjuvants and drugs designing, modification of tunnels and catalytic pockets to reduce substrate binding and FAD approved drugs selection. Inhibition of this virulent factor in CRC patients' gut bacteria might result in oncogenesis regression and reduced death rate.

背景:大肠癌(CRC)是一种与胃肠道微生物菌群失调有关的胃肠道疾病。本研究旨在对 CRC 患者肠道相关细菌(F. nucleatum)和健康人肠道相关细菌(E. cloacae)中的毒性因子 FadA 进行比较分析。方法:为此,从 UniProt 数据库中检索了 15 株 F. nucleatum 和 4 株 E. cloacae 的 FadA 蛋白序列。这些序列通过 VirulentPred、PSLpred、ProtParam、PFP-FunDSeqE、PROTEUS Structure Prediction Server、SWISS-MODEL、SAVES 验证服务器、MEME suite 5.5.0、CAVER 网络工具、Webserver VaxinPAD、HPEPDOCK 和 HDOCK 服务器进行分析。研究结果结果发现,F. nucleatum 的 FadA 蛋白与 E. nucleatum 的 FadA 蛋白相比有显著差异,即:F. nucleatum 的 FadA 蛋白呈螺旋构型,定位在细胞质、周质、外膜和细胞外,二维结构包括 70-96% 的螺旋、0% 的β-片、4-30% 的线圈和 17-20 个信号肽残基,具有亲水性、强酸性和较少的抗原表位。与此相反,研究发现来自 E. nucleatum 的 FadA 蛋白具有球状三维构型、细胞质定位、二维结构(30-56% 的螺旋、12-21% 的β-片、33-50% 的线圈和 43 个信号肽残基)、高度疏水性、微酸性和较多的抗原表位。毒力因子的对接分析表明,它们与之前报道的抑制肽和 FAD 批准的 COX2 药物具有很高的结合亲和力。结论这些广泛的差异不仅为我们提供了 FadA 蛋白作为 F. nucleatum 致病因子的原因,而且可能有助于我们设计 FadA 蛋白的毒性抑制策略,包括基于多肽的疫苗佐剂和药物设计、隧道和催化口袋的改造以减少底物结合以及 FAD 批准药物的选择。抑制 CRC 患者肠道细菌中的这一毒性因子可能会导致肿瘤发生的消退和死亡率的降低。
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引用次数: 0
DPP7 as a Potential Therapeutic Marker for Colorectal Cancer. 作为结直肠癌潜在治疗标志物的 DPP7
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.93112
Li Ma, Hailang Yang, Shuwei Wu, Chunliang Wang, Jinhong Mei

Background: Dipeptidyl peptidase 7 (DPP7) is overexpressed in various tumors, but its role in colorectal cancer (CRC) remains unclear. Study the Impact of DPP7 on malignant progression and tumor immunity in CRC. Methods: We utilized Tumor Immune Estimation Resource 2.0 (TIMER2.0) and The Cancer Genome Atlas (TCGA) analyses to assess the expression of DPP7 in tumors and validated it through immunohistochemistry and immunoblotting. Additionally, we investigated the relationship between DPP7 and immune cell infiltration using single-sample Gene Set Enrichment Analysis (ssGSEA) analysis. Finally, the impact of DPP7 on cell proliferation, invasion, migration, and immune cell function in the tumor microenvironment was confirmed through cell experiments and animal studies. Results: DPP7 is highly expressed in CRC, and high expression of DPP7 is associated with poor prognosis. Cell experiments demonstrate that overexpression of DPP7 enhances the proliferation, migration, and invasion capabilities of colorectal cancer cells both in vitro and in vivo. Immune infiltration analysis and co-culture results indicate that overexpression of DPP7 suppresses the immune cell's cytotoxic function against tumors in the tumor microenvironment. Conclusions: DPP7 promotes the malignant potential of colorectal cancer cells and inhibits tumor immune function, thereby promoting the progression of colorectal cancer.

背景:二肽基肽酶 7(DPP7)在多种肿瘤中过表达,但其在结直肠癌(CRC)中的作用仍不清楚。研究 DPP7 对 CRC 恶性进展和肿瘤免疫的影响。研究方法我们利用肿瘤免疫估算资源 2.0(TIMER2.0)和癌症基因组图谱(TCGA)分析评估了 DPP7 在肿瘤中的表达,并通过免疫组化和免疫印迹进行了验证。此外,我们还利用单样本基因组富集分析(ssGSEA)研究了DPP7与免疫细胞浸润之间的关系。最后,我们通过细胞实验和动物实验证实了 DPP7 对肿瘤微环境中细胞增殖、侵袭、迁移和免疫细胞功能的影响。研究结果DPP7 在 CRC 中高表达,DPP7 的高表达与预后不良有关。细胞实验证明,过表达 DPP7 可增强结直肠癌细胞在体外和体内的增殖、迁移和侵袭能力。免疫浸润分析和共培养结果表明,过表达 DPP7 会抑制肿瘤微环境中免疫细胞对肿瘤的细胞毒功能。结论DPP7 促进了结直肠癌细胞的恶性潜能,抑制了肿瘤免疫功能,从而促进了结直肠癌的进展。
{"title":"DPP7 as a Potential Therapeutic Marker for Colorectal Cancer.","authors":"Li Ma, Hailang Yang, Shuwei Wu, Chunliang Wang, Jinhong Mei","doi":"10.7150/jca.93112","DOIUrl":"10.7150/jca.93112","url":null,"abstract":"<p><p><b>Background:</b> Dipeptidyl peptidase 7 (DPP7) is overexpressed in various tumors, but its role in colorectal cancer (CRC) remains unclear. Study the Impact of DPP7 on malignant progression and tumor immunity in CRC. <b>Methods:</b> We utilized Tumor Immune Estimation Resource 2.0 (TIMER2.0) and The Cancer Genome Atlas (TCGA) analyses to assess the expression of DPP7 in tumors and validated it through immunohistochemistry and immunoblotting. Additionally, we investigated the relationship between DPP7 and immune cell infiltration using single-sample Gene Set Enrichment Analysis (ssGSEA) analysis. Finally, the impact of DPP7 on cell proliferation, invasion, migration, and immune cell function in the tumor microenvironment was confirmed through cell experiments and animal studies. <b>Results:</b> DPP7 is highly expressed in CRC, and high expression of DPP7 is associated with poor prognosis. Cell experiments demonstrate that overexpression of DPP7 enhances the proliferation, migration, and invasion capabilities of colorectal cancer cells both <i>in vitro</i> and <i>in vivo</i>. Immune infiltration analysis and co-culture results indicate that overexpression of DPP7 suppresses the immune cell's cytotoxic function against tumors in the tumor microenvironment. <b>Conclusions:</b> DPP7 promotes the malignant potential of colorectal cancer cells and inhibits tumor immune function, thereby promoting the progression of colorectal cancer.</p>","PeriodicalId":15183,"journal":{"name":"Journal of Cancer","volume":"15 16","pages":"5425-5439"},"PeriodicalIF":3.3,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11375546/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154174","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Oncogenic-tsRNA: A novel diagnostic and therapeutic molecule for cancer clinic. 致癌-tsRNA:用于癌症临床的新型诊断和治疗分子。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.98656
Lin Chen, Yao Wu, Qi Tang, Faqing Tang

tsRNA (tRNA-derived small RNA) is derived from mature tRNA or precursor tRNA (pre-tRNAs). It is lately found that tsRNA's aberrant expression is associated with tumor occurrence and development, it may be used a molecule of diagnosis and therapy. Based on the cleavage position of pre-tRNAs or mature tRNAs, tsRNAs are classified into two categories: tRNA-derived fragments (tRFs) and tRNA halves (also named tiRNAs or tRHs). tsRNAs display more stability within cells, tissues, and peripheral blood than other small non-coding RNAs (sncRNAs), and play a role of stable entities that function in various biological contexts, thus, they may serve as functional molecules in human disease. Recently, tsRNAs have been found in a large number of tumors including such as lung cancer, breast cancer, gastric cancer, colorectal cancer, liver cancer, and prostate cancer. Although the biological function of tsRNAs is still poorly understood, increasing evidences have indicated that tsRNAs have a great significance and potential in early tumor screening and diagnosis, therapeutic targets and application, and prognosis. In the present review, we mainly describe tsRNAs in tumors and their potential clinical value in early screening and diagnosis, therapeutic targets and application, and prognosis, it provides theoretical support and guidance for further revealing the therapeutic potential of tsRNAs in tumor.

tsRNA(tRNA-derived small RNA)来源于成熟的 tRNA 或前体 tRNA(pre-tRNAs)。最近发现,tsRNA 的异常表达与肿瘤的发生和发展有关,可作为诊断和治疗的分子。根据前 tRNA 或成熟 tRNA 的裂解位置,tsRNA 可分为两类:tRNA 衍生片段(tRFs)和 tRNA 半片段(又称 tiRNAs 或 tRHs)。tsRNAs 在细胞、组织和外周血中比其他小非编码 RNAs(sncRNAs)更稳定,是在各种生物环境中发挥作用的稳定实体,因此可作为人类疾病的功能分子。最近,tsRNAs 在肺癌、乳腺癌、胃癌、结直肠癌、肝癌和前列腺癌等大量肿瘤中被发现。尽管人们对 tsRNAs 的生物学功能还知之甚少,但越来越多的证据表明,tsRNAs 在肿瘤早期筛查和诊断、治疗靶点和应用以及预后判断等方面具有重要的意义和潜力。本综述主要阐述了肿瘤中的 tsRNAs 及其在肿瘤早期筛查和诊断、治疗靶点和应用、预后判断等方面的潜在临床价值,为进一步揭示 tsRNAs 在肿瘤中的治疗潜力提供理论支持和指导。
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引用次数: 0
circTP63 promotes prostate cancer progression via miR-421/VAMP associated protein A axis. circTP63 通过 miR-421/VAMP 相关蛋白 A 轴促进前列腺癌的进展。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.7150/jca.99561
Jianfeng Xu, Siwei Xu, Weihui Liu, Jiabi Chen, Longbo Cai, Wei Zhuang

Background: Circular RNAs (circRNA) have a vital role in the progression of cancers. For instance, circTP63 is upregulated in prostate cancer (PCa) tissues compared with adjacent normal tissues. However, the role of circTP63 in prostate cancer is still unclear. Methods: qRT-PCR assays were applied to detected the expression of circTP63 and miR-421 in PCa samples. Functionally, CCK-8, apoptosis assay, and transwell migration and invasion assays were used to explore the role of circTP63 in PCa progression. Mechanistically, the interaction between circTP63 and miR-421 were verified using qRT-PCR and dual-luciferase report assay. Western blot, qRT-PCR, and dual-luciferase report assay were applied to detect the interaction between miR-421 and VAMP associated protein A (VAPA). And xenograft animal model was used to detect the role of circTP63 in vivo. Results: circTP63 was upregulated and miR-421 was downregulated in PCa tissues. Functional assays revealed that circTP63 promoted the proliferation and metastasis of PCa cells in vitro. In addition, the inhibition effect of circTP63 knockdown could be rescued by miR-421 inhibition or VAPA overexpression. Mechanistically, circTP63-mediated PCa progression through directly binding to miR-421, and subsequently releasing the VAPA. In vivo, silencing of circTP63 significantly impaired PCa progression. Conclusion: In summary, our study identified circTP63 as an oncogenic circRNA, which could be a promising diagnostic and therapeutic target for PCa treatment.

背景环状 RNA(circRNA)在癌症进展过程中起着至关重要的作用。例如,与邻近的正常组织相比,circTP63在前列腺癌(PCa)组织中上调。然而,circTP63 在前列腺癌中的作用仍不清楚。方法:应用 qRT-PCR 检测 PCa 样本中 circTP63 和 miR-421 的表达。在功能上,采用CCK-8、细胞凋亡检测、transwell迁移和侵袭检测来探讨circTP63在PCa进展中的作用。在机理上,利用 qRT-PCR 和双荧光素酶报告实验验证了 circTP63 和 miR-421 之间的相互作用。应用 Western 印迹、qRT-PCR 和双荧光素酶报告检测 miR-421 与 VAMP 相关蛋白 A(VAPA)之间的相互作用。并采用异种移植动物模型检测 circTP63 在体内的作用。结果:在 PCa 组织中,circTP63 上调,miR-421 下调。功能检测显示,circTP63 在体外促进了 PCa 细胞的增殖和转移。此外,miR-421抑制或VAPA过表达可挽救circTP63敲除的抑制作用。从机理上讲,circTP63通过直接与miR-421结合,随后释放VAPA来介导PCa进展。在体内,沉默 circTP63 能显著抑制 PCa 的进展。结论总之,我们的研究发现 circTP63 是一种致癌的 circRNA,它可能是治疗 PCa 的一个有前景的诊断和治疗靶点。
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引用次数: 0
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Journal of Cancer
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