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Broad-Purpose Solutions of N-Chlorotaurine: A Convenient Synthetic Approach and Comparative Evaluation of Stability and Antimicrobial Activity N-Chlorotaurine 的多用途溶液:便捷的合成方法以及稳定性和抗菌活性的比较评估
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-04-03 DOI: 10.1155/2024/8959915
Bohdan Murashevych, Dmitry Girenko, Iryna Koshova, Ganna Maslak, Konstantin Burmistrov, Dmytro Stepanskyi
Solutions of N-chlorotaurine (NCT) are effective microbiocidal agents with a broad spectrum of pharmacological activity and outstanding tolerability. The main problem limiting their medical use is their instability, which is generally inherent in solutions of all chlorine-active compounds. In this work, we developed a new synthetic approach to the synthesis of such solutions, which consists in the activation of granular and fibrous polymeric materials with immobilized N-chlorosulfonamide groups, which act here as a chlorinating agent. It was shown that when such polymers are added to taurine solutions, NCT solutions with a chemical composition suitable for immediate medical use can be obtained. The stability of such solutions under various conditions was analyzed in comparison with NCTs obtained by the classical method from sodium hypochlorite. It was confirmed that the process of decomposition of all studied solutions obeys the kinetic laws of the first-order reaction. It was proven that solutions obtained from granular polymers are more stable both in terms of active chlorine concentration and in terms of pH, and their additional buffering is not needed. The stability of solutions decreases when they are stored in the presence of polymers used, with an increase in the excess of taurine and with acidification. The high sensitivity of all obtained solutions to UV radiation was also noted. The antimicrobial properties of NCT solutions obtained from polymers are not inferior to those obtained from sodium hypochlorite at the same concentration of active chlorine. Considering the stability and compactness of the initial chlorine-active polymers, as well as the possibility of their multiple regeneration, the developed method can form the basis of the technology for obtaining multifunctional NCT solutions for medical purposes with the desired physical and chemical properties without using special equipment or specific reagents.
N-Clorotaurine (NCT) 溶液是一种有效的微生物杀灭剂,具有广泛的药理活性和出色的耐受性。限制其医疗用途的主要问题是其不稳定性,这是所有氯活性化合物溶液的固有特性。在这项工作中,我们开发了一种新的合成方法来合成此类溶液,即活化带有固定 N-氯磺酰胺基团的颗粒状和纤维状聚合物材料。研究表明,在牛磺酸溶液中加入这种聚合物后,可以获得化学成分适合直接用于医疗的 NCT 溶液。通过与用传统方法从次氯酸钠中获得的 NCT 进行比较,分析了这种溶液在各种条件下的稳定性。研究证实,所有研究溶液的分解过程都遵循一阶反应动力学规律。事实证明,从颗粒聚合物中获得的溶液在活性氯浓度和 pH 值方面都更加稳定,而且不需要额外的缓冲。当溶液在有所用聚合物存在的情况下储存时,其稳定性会随着牛磺酸过量的增加和酸化而降低。此外,所有获得的溶液对紫外线辐射都非常敏感。在活性氯浓度相同的情况下,用聚合物制成的 NCT 溶液的抗菌性能并不比用次氯酸钠制成的溶液差。考虑到初始氯活性聚合物的稳定性和紧凑性,以及其多次再生的可能性,所开发的方法可作为技术基础,在不使用特殊设备或特定试剂的情况下,获得具有所需物理和化学性质的医用多功能 NCT 溶液。
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引用次数: 0
Antidiabetic Potential of Phytochemicals Found in Vernonia amygdalina Vernonia amygdalina 中发现的植物化学物质的抗糖尿病潜力
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-03-26 DOI: 10.1155/2024/6111603
Archna Talwar, Neha Chakraborty, Manaal Zahera, Shruti Anand, Irshad Ahmad, Samra Siddiqui, Avni Nayyar, Ashanul Haque, Mohd Saeed
Type 2 diabetes mellitus (T2DM), or “insulin-independent diabetes mellitus,” is a worldwide health concern. Diabetes affects roughly 415 million individuals worldwide, with 193 million undiagnosed cases. The number of people afflicted in the following decades is predicted to double. Although various synthetic medications are currently available to treat/manage T2DM, their side effects compel researchers to seek novel treatment options. Because of their affinity for biological receptors and broad bioactivity, nature has long been a source of innovative medication. V. amygdalina is one of the numerous natural productswith antidiabetic properties. Several studies have shown that the extracts have antidiabetic effects in vitro and in vivo. This review examined the antidiabetic and pharmacokinetic characteristics of phytoconstituents found in V. amygdalina.
2 型糖尿病(T2DM),又称 "胰岛素依赖型糖尿病",是一个世界性的健康问题。全世界约有 4.15 亿人患有糖尿病,其中有 1.93 亿人未经诊断。据预测,未来几十年患病人数将翻一番。尽管目前有多种合成药物可用于治疗/控制 T2DM,但其副作用迫使研究人员寻求新的治疗方案。由于它们对生物受体的亲和力和广泛的生物活性,大自然一直是创新药物的来源。V. amygdalina 是众多具有抗糖尿病特性的天然产品之一。多项研究表明,其提取物具有体外和体内抗糖尿病作用。这篇综述探讨了杏仁果中发现的植物成分的抗糖尿病和药代动力学特性。
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引用次数: 0
Characterization Analysis of Mudstone and Study of Its Pb (II) Adsorption Characteristics in Polluted Water Bodies 泥岩的特性分析及其在污染水体中的铅 (II) 吸附特性研究
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-03-25 DOI: 10.1155/2024/2510050
Baoqiang Zhang, Bo Zhao, Longfei Xia, Yingying Sun, Tianqing Chen, Hailan Shi
In order to explore a medium material for the efficient treatment of Pb(II) pollutants in groundwater, in this paper, mudstone is selected as the medium material, and the morphological structure of the mudstone is characterizes via X-ray diffraction (XRD), scanning electron microscopy (SEM), and Brunauer–Emmett–Teller (BET) analyses to study the feasibility of the mudstone adsorbing Pb(II) ions. Then, static adsorption experiments are carried out to investigate the removal effect of mudstone on Pb(II) in aqueous solutions under different conditions and to determine the optimal adsorption conditions. Finally, the results are fitted and analyzed using a thermodynamic model to explore the adsorption mechanism of the mudstone. The main results of this study are as follows. The main mineral composition of the mudstone used in the experiments includes CaCO3, SiO2, CaAl2O4·10H2O, and CaFe4O7. The specific surface area of the mudstone is as high as 23.027 m2·g−1, the pore size is 9.145 nm, and its surface structure is rough, with pores and fissures developed. The pore space and adsorption capacity of the mudstone were enhanced. When 1 g·L−1 of mudstone was added, the pH value of the solution was 6, the reaction time was 60 min, and the initial concentration of Pb(II) was 30 mg·L−1. The removal efficiency of Pb reached 84.5%, and the adsorption amount was 25.352 mg·g−1. For the removal of Pb(II) from the aqueous solution by the mudstone under different concentrations of Pb(II), the reaction was in accordance with the Langmuir adsorption isotherm model, and the maximum adsorption amount reached 54.975 mg·g−1. The relationship between the removal of Pb(II) and the reaction time was in accordance with the pseudo-second-order rate model. The results of this study suggest that mudstone can be used for the removal of Pb(II) from aqueous media.
为了探索一种高效处理地下水中铅(II)污染物的介质材料,本文选择泥岩作为介质材料,通过X射线衍射(XRD)、扫描电子显微镜(SEM)和Brunauer-Emmett-Teller(BET)分析对泥岩的形态结构进行表征,研究泥岩吸附铅(II)离子的可行性。然后,进行静态吸附实验,研究泥岩在不同条件下对水溶液中铅(II)的去除效果,并确定最佳吸附条件。最后,利用热力学模型对结果进行拟合和分析,探索泥岩的吸附机理。本研究的主要结果如下。实验所用泥岩的主要矿物成分包括 CaCO3、SiO2、CaAl2O4-10H2O 和 CaFe4O7。泥岩的比表面积高达 23.027 m2-g-1,孔径为 9.145 nm,表面结构粗糙,孔隙和裂隙发育。泥岩的孔隙空间和吸附能力都得到了提高。当加入 1 g-L-1 泥岩时,溶液的 pH 值为 6,反应时间为 60 分钟,Pb(II) 的初始浓度为 30 mg-L-1。铅的去除率达到 84.5%,吸附量为 25.352 mg-g-1。在不同浓度的 Pb(II)条件下,泥岩对水溶液中 Pb(II)的去除反应符合 Langmuir 吸附等温线模型,最大吸附量达到 54.975 mg-g-1。Pb(II) 的去除率与反应时间之间的关系符合假二阶速率模型。研究结果表明,泥岩可用于去除水介质中的铅(II)。
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引用次数: 0
Eco-Friendly Coffee Waste-Based Carbon Dots Coupled to ZnBi-Layered Double Hydroxide Heterojunction: Enhanced Control of Interfacial Charge Transfer for Highly Efficient Visible-Light Catalytic Activity 与 ZnBi- 层状双氢氧化物异质结耦合的环保型咖啡废料基碳点:增强界面电荷转移控制,实现高效可见光催化活性
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-03-20 DOI: 10.1155/2024/2792872
Nguyen Thi Thanh Huong, Dang Nguyen Nha Khanh, Ngo Thi Tuong Vy, Le Hai Khoa, Nguyen The Anh, Dang Vu Bao Tran, Tong Pham Phuong Thuan, Le Khue Tu, Nguyen Thanh Ha, Nguyen Ngoc Nghia, Nguyen Thi Kim Phuong
Using a simple, low cost, and excellent efficient approach, carbon dots (CDs) were fabricated via a one-pot hydrothermal process of coffee waste. Amazingly, the combination of 2% CDs with ZnBi2O4 to form a new and excellent heterogeneous photocatalyst enabled the complete decomposition of 2, 4-dichlorophenoxyacetic acid (2, 4-D) into CO2 and H2O. The findings of this study provide a new perspective on the utilization of agricultural waste for creating products of scientific and practical significance. More than 91% of 2, 4-D (initial concentration of 30 mg/L) was completely decomposed and dechlorinated using 1.0 g/L of CDs (2%)-ZnBi2O4 at pH 4.0 after 120 min of exposure to visible light (with k = 0.0178 min−1), and more than 86% of the decomposed 2, 4-D was mineralized into CO2 and H2O. There was no sign of catalyst deactivation after four cycles of reuse, demonstrating the durability and efficiency of CDs (2%)-ZnBi2O4. The significant improvement in the photocatalytic efficiency of CDs (2%)-ZnBi2O4 compared with that of bare CDs or ZnBi2O4 is due to the formation of defects at the interfaces of the heterojunction; therefore, the movement of photogenerated electrons at the interface between the two components is rapid. The mineralization of 2, 4-D by CDs (2%)-ZnBi2O4 upon exposure to visible light is induced mainly by the photogenerated holes, followed by O2•−, and finally OH radicals.
利用一种简单、低成本、高效率的方法,通过咖啡废料的一锅水热法制造出了碳点(CD)。令人惊奇的是,2% 的碳点与 ZnBi2O4 结合形成了一种新型、优异的异相光催化剂,能将 2,4-二氯苯氧乙酸(2,4-D)完全分解成 CO2 和 H2O。这项研究的结果为利用农业废弃物创造具有科学和实用意义的产品提供了一个新的视角。在 pH 值为 4.0 的条件下,使用 1.0 g/L 的 CDs (2%)-ZnBi2O4 对可见光照射 120 分钟后(k = 0.0178 min-1),超过 91% 的 2,4-D(初始浓度为 30 mg/L)被完全分解和脱氯,超过 86% 的 2,4-D 被矿化成 CO2 和 H2O。在重复使用四个周期后,催化剂没有失活迹象,这表明 CDs (2%)-ZnBi2O4 具有耐久性和高效性。与裸 CD 或 ZnBi2O4 相比,CD(2%)-ZnBi2O4 的光催化效率明显提高,这是因为异质结的界面上形成了缺陷,因此光生电子在两种成分的界面上移动迅速。在可见光照射下,CD(2%)-ZnBi2O4 对 2,4-D 的矿化主要是由光生空穴诱导的,其次是 O2-,最后是 OH-自由基。
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引用次数: 0
Antibacterial Mechanisms of Constituents from Galla chinensis Revealed by Experimental and Virtual Screening-Based Studies 基于实验和虚拟筛选的研究揭示了五倍子成分的抗菌机制
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-03-18 DOI: 10.1155/2024/8963887
Meilan Liu, Tingting Lin, Liyuan Yao, Hongfeng Chen, Yu Lu, Zhengguo Tao, Haiquan Zhao, Sheng-Xiang Qiu, Liyun Zhao
Many traditional Chinese medicines (TCMs) have been confirmed to have antibacterial activities. However, very few substances have been found to be active against Gram-negative bacteria. This study aimed to identify antimicrobial activity substances against Gram-negative bacteria from fourteen TCMs. Fourteen TCMs with antibacterial potential were chosen for quantitative extraction and antibacterial activity assay, and the plant with the highest activity against Escherichia coli was selected to construct the component-target network. The following virtual screening and enzyme inhibition experiments were performed to analyse the antibacterial mechanisms of the compounds from Galla chinensis. The chemical constituents of Galla chinensis were identified by chemical fingerprinting. 1, 2, 3, 4, 6-Penta-O-galloyl-β-D-glucose (PGG) from Galla chinensis exhibited significant inhibition activity against adenylyl transferase (ATase) of E. coli and antibacterial activity against E. coli. Meanwhile, PGG was identified in the Galla chinensis ethanol extract as the abundant ingredient with a high content of 1.95% (w/w). PGG enriched in Galla chinensis is a promising natural antibiotic with the mode of action inhibiting ATase activity. To our knowledge, this is the first study attributing the antibacterial activity of PGG to its affinity with ATase.
许多传统中药已被证实具有抗菌活性。然而,很少发现对革兰氏阴性菌有活性的物质。本研究旨在从 14 种中药中找出对革兰氏阴性菌具有抗菌活性的物质。研究选择了 14 种具有抗菌潜力的中药进行定量提取和抗菌活性检测,并选择对大肠杆菌活性最高的植物构建成分-靶标网络。随后进行了虚拟筛选和酶抑制实验,以分析五倍子化合物的抗菌机理。通过化学指纹图谱鉴定了五倍子的化学成分。五倍子中的 1, 2, 3, 4, 6-五-O-galloyl-β-D-葡萄糖(PGG)对大肠杆菌腺苷酸转移酶(ATase)具有显著的抑制活性,对大肠杆菌具有抗菌活性。同时,在五倍子乙醇提取物中发现了丰富的 PGG 成分,其含量高达 1.95%(重量比)。五倍子中富含的 PGG 是一种很有前途的天然抗生素,其作用模式是抑制 AT 酶的活性。据我们所知,这是首次将 PGG 的抗菌活性归因于其与 ATase 的亲和力的研究。
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引用次数: 0
Effect of Ripening and Extraction Method on the Physicochemical Properties of Pectin Extracted from Peels of Apem and Apantu Plantain Cultivars in Ghana 成熟和提取方法对从加纳 Apem 和 Apantu 车前草品种果皮中提取的果胶理化性质的影响
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-03-14 DOI: 10.1155/2024/6677179
Desmond Asamoah Bruce Otu, Frederick William Akuffo Owusu, Prince George Jnr Acquah, Mariam El Boakye-Gyasi, Yayra Edzor-Agbo, Raphael Johnson, Marcel Tunkumgnen Bayor, Mary-Ann Archer
Fruit waste has emerged as a significant environmental issue in recent years, adding to the global burden. In Ghana, the extensive use of plantains at various stages of ripeness results in substantial waste during each processing stage, leading to disposal challenges. Interestingly, these wastes often hold considerable economic value and can be repurposed as a source of valuable raw materials or products. Given the broad range of uses for plantains and the significant pollution problems associated with their processing, finding new uses for this organic waste has become a pressing necessity. This study investigated the impact of the method of extraction and ripening stages on the physicochemical characteristics of pectin obtained from two different cultivars of plantains, namely, Apem (M) and Apantu (T), which are indigenous to Ghana. Pectin samples were extracted from different stages of ripening (matured-green (G), half-ripe (H), and full-ripe (R)) by the utilization of acidic (D) and alkaline (L) extraction methods. The analyses conducted on the extracted pectin included proximate composition and moisture content determination, assessment of mineral/elemental composition, and solubility testing. Phytochemical investigations were performed to determine the phytoconstituents present in these pectin extracts. The pectin samples were characterized by determining their equivalent weight, methoxyl and anhydrouronic acid content, and the degree of esterification. The pectin yields obtained from the samples ranged from 10.01% to 46.55%. The moisture levels of all the pectins were below 20%. All pectin samples had swelling indexes between 37.5 ± 0.01% and 185.71 ± 0.02%. The equivalent weight (EW) of the pectin samples ranged from 1351.00 ± 0.6 g/mol to 10000.00 ± 0.07 g/mol. The methoxyl content (MeO) fell within the range of 6.2 ± 0.07% to 14.88 ± 0.14%, while the anhydrouronic acid content (AUA) varied between 38.72 ± 0.28% and 86.59 ± 0.21%. The degree of esterification (DE) ranged from 81.22 ± 0.21% to 97.56 ± 0.14%. Furthermore, the result of the micronutrient and mineral analysis indicated compliance with nutritional requirements. The levels of heavy metals were also within acceptable thresholds, thereby adhering to existing regulatory requirements. These findings highlight the significance of both the extraction technique and the ripening stage on the physicochemical properties of the extracted pectins. Generally, the extracted pectins possess excellent nutritional quality and physicochemical properties, rendering them a very valuable resource that holds promising potential for use in the food and pharmaceutical sectors.
近年来,水果废物已成为一个重要的环境问题,加重了全球负担。在加纳,大蕉在不同成熟阶段的广泛使用导致在每个加工阶段都产生大量废物,给处理工作带来挑战。有趣的是,这些废物往往具有相当大的经济价值,可以重新用作有价值的原材料或产品来源。鉴于大蕉的广泛用途及其加工过程中产生的严重污染问题,为这种有机废物寻找新的用途已成为当务之急。本研究调查了提取方法和成熟阶段对果胶理化特性的影响,果胶取自加纳本土的两种不同的芭蕉品种,即 Apem (M) 和 Apantu (T)。采用酸性(D)和碱性(L)萃取法,从不同成熟阶段(青熟(G)、半熟(H)和全熟(R))提取果胶样本。对提取的果胶进行的分析包括近似成分和水分含量测定、矿物质/元素成分评估以及溶解度测试。为确定这些果胶提取物中的植物成分,还进行了植物化学调查。果胶样品的特征是测定其等效重量、甲氧基和无水酸含量以及酯化程度。从样品中获得的果胶产量从 10.01% 到 46.55% 不等。所有果胶的水分含量都低于 20%。所有果胶样品的膨胀指数在 37.5 ± 0.01% 和 185.71 ± 0.02% 之间。果胶样品的等效重量(EW)介于 1351.00 ± 0.6 g/mol 到 10000.00 ± 0.07 g/mol 之间。甲氧基含量(MeO)在 6.2 ± 0.07% 到 14.88 ± 0.14% 之间,而无水酸含量(AUA)在 38.72 ± 0.28% 到 86.59 ± 0.21% 之间。酯化度(DE)在 81.22 ± 0.21% 到 97.56 ± 0.14% 之间。此外,微量元素和矿物质的分析结果表明符合营养要求。重金属含量也在可接受的阈值范围内,因此符合现有的监管要求。这些发现凸显了提取技术和成熟阶段对提取果胶理化性质的重要影响。总体而言,提取的果胶具有优异的营养质量和理化特性,是一种非常宝贵的资源,在食品和制药领域具有广阔的应用前景。
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引用次数: 0
Multistaged In Silico Discovery of the Best SARS-CoV-2 Main Protease Inhibitors amongst 3009 Clinical and FDA-Approved Compounds 从 3009 种临床和 FDA 批准的化合物中分阶段发现 SARS-CoV-2 主要蛋白酶的最佳抑制剂
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-03-06 DOI: 10.1155/2024/5084553
Ibrahim H. Eissa, Abdulrahman M. Saleh, Sara T. Al-Rashood, Abdul-Aziz M. M. El-Attar, Ahmed M. Metwaly
As a follow-up to our teamwork’s former work against SARS-CoV-2, eight compounds (ramelteon (68), prilocaine (224), nefiracetam (339), cyclandelate (911), mepivacaine (2325), ropivacaine (2351), tasimelteon (2384), and levobupivacaine (2840)) were revealed as the best potentially active SARS-CoV-2 inhibitors targeting the main protease (PDB ID: 5R84), Mpro. The compounds were named in the midst of 3009 FDA and clinically approved compounds employing a multistaged in silico method. A molecular fingerprints study with GWS, the cocrystallized ligand of the Mpro, indicated the resemblance of 150 candidates. Consequently, a structure similarity experiment disclosed the best twenty-nine analogous. Then, molecular docking studies were done against the Mpro active site and showed the binding of the best compounds. Next, a 3D-pharmacophore study confirmed the obtained results for the eight compounds by exhibiting relative fit values of more than 90% (except for 68, 74%, and 2384, 83%). Levobupivacaine (2840) showed the most accurate docking and pharmacophore scores and was picked for further MD simulations experiments (RMSD, RMSF, Rg, SASA, and H-H bonding) over 100 ns. The MD simulations results revealed the accurate binding as well as the optimum dynamics of the Mpro-levobupivacaine complex. Finally, MM-PBSA studies were conducted and indicated the favorable bonding of the Mpro-levobupivacaine complex with a free energy value of −235 kJ/mol. The fulfilled outcomes hold out hope of beating COVID-19 through more in vitro and in vivo research for the named compounds.
作为我们团队之前针对 SARS-CoV-2 所做工作的后续,8 个化合物(ramelteon (68)、prilocaine (224)、nefiracetam (339)、cyclandelate (911)、mepivacaine (2325)、ropivacaine (2351)、tasimelteon (2384) 和 levobupivacaine (2840))被揭示为针对主要蛋白酶(PDB ID:5R84),即 Mpro。这些化合物是采用多阶段硅学方法,从 3009 种美国食品药物管理局和临床批准的化合物中挑选出来的。与 Mpro 的共晶配体 GWS 的分子指纹研究表明,150 个候选化合物具有相似性。因此,结构相似性实验揭示了最佳的 29 个类似物。然后,针对 Mpro 的活性位点进行了分子对接研究,结果显示了最佳化合物的结合情况。接着,三维药效研究证实了所获得的结果,八个化合物的相对拟合值超过了 90%(68(74%)和 2384(83%)除外)。左旋布比卡因(2840)的对接和药效学得分最为准确,因此被选中进行进一步的 MD 模拟实验(RMSD、RMSF、Rg、SASA 和 H-H 键合),实验时间超过 100 ns。MD 模拟结果表明,Mpro-levobupivacaine 复合物具有精确的结合力和最佳的动力学特性。最后,还进行了 MM-PBSA 研究,结果表明 Mpro-levobupivacaine 复合物的自由能值为 -235 kJ/mol,具有良好的结合性能。所取得的成果使我们看到了通过对所命名的化合物进行更多的体外和体内研究来战胜 COVID-19 的希望。
{"title":"Multistaged In Silico Discovery of the Best SARS-CoV-2 Main Protease Inhibitors amongst 3009 Clinical and FDA-Approved Compounds","authors":"Ibrahim H. Eissa, Abdulrahman M. Saleh, Sara T. Al-Rashood, Abdul-Aziz M. M. El-Attar, Ahmed M. Metwaly","doi":"10.1155/2024/5084553","DOIUrl":"https://doi.org/10.1155/2024/5084553","url":null,"abstract":"As a follow-up to our teamwork’s former work against SARS-CoV-2, eight compounds (ramelteon (<b>68</b>), prilocaine (<b>224</b>), nefiracetam (<b>339</b>), cyclandelate (<b>911</b>), mepivacaine (<b>2325</b>), ropivacaine (<b>2351</b>), tasimelteon (<b>2384</b>), and levobupivacaine (<b>2840</b>)) were revealed as the best potentially active SARS-CoV-2 inhibitors targeting the main protease (PDB ID: 5R84), M<sup>pro</sup>. The compounds were named in the midst of 3009 FDA and clinically approved compounds employing a multistaged <i>in silico</i> method. A molecular fingerprints study with <b>GWS</b>, the cocrystallized ligand of the M<sup>pro</sup>, indicated the resemblance of 150 candidates. Consequently, a structure similarity experiment disclosed the best twenty-nine analogous. Then, molecular docking studies were done against the M<sup>pro</sup> active site and showed the binding of the best compounds. Next, a 3D-pharmacophore study confirmed the obtained results for the eight compounds by exhibiting relative fit values of more than 90% (except for <b>68</b>, 74%, and <b>2384</b>, 83%). Levobupivacaine (<b>2840</b>) showed the most accurate docking and pharmacophore scores and was picked for further MD simulations experiments (RMSD, RMSF, R<sub>g</sub>, SASA, and H-H bonding) over 100 ns. The MD simulations results revealed the accurate binding as well as the optimum dynamics of the M<sup>pro</sup>-levobupivacaine complex. Finally, MM-PBSA studies were conducted and indicated the favorable bonding of the M<sup>pro</sup>-levobupivacaine complex with a free energy value of −235 kJ/mol. The fulfilled outcomes hold out hope of beating COVID-19 through more <i>in vitro</i> and <i>in vivo</i> research for the named compounds.","PeriodicalId":15348,"journal":{"name":"Journal of Chemistry","volume":"38 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140045493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design and In Silico and In Vitro Evaluations of a Novel Nicotinamide Derivative as a VEGFR-2 Inhibitor 一种新型烟酰胺衍生物作为 VEGFR-2 抑制剂的设计、硅学和体外评估
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-03-01 DOI: 10.1155/2024/2176512
Ibrahim H. Eissa, Muhammad Abd ElGayed Bkrah, Reda G. Yousef, Hazem Elkady, Eslam B. Elkaeed, Bshra A. Alsfouk, Ibrahim M. Ibrahim, Ahmed M. Metwaly, Dalal Z. Husein
A new nicotinamide derivative, (E)-N-(4-(1-(2-(4-benzamidobenzoyl)hydrazone)ethyl)phenyl)nicotinamide, was designed as a VEGFR-2 inhibitor. Utilizing the density functional theory (DFT) calculations, the three-dimensional structure of the designed compound was determined, shedding light on its stability and reactivity. Molecular docking revealed its capability to inhibit VEGFR-2, which was further supported by molecular dynamics (MD) simulations confirming its binding to the target protein. In addition, molecular mechanics-generalized born surface area (MM-GBSA), protein-ligand interactions profiler (PLIP), and essential dynamics studies provided further validation of the compound’s precise binding with optimal energy. Then, the “compound 10” was synthesized and subjected to in vitro assays. Compound 10 inhibited VEGFR-2 with an IC50 value of 105.4 ± 0.896 nM, comparing sorafenib’s IC50 value of 61.65 ± 0.934 nM. Besides, it exhibited cytotoxicity against HepG2 and MCF-7 cancer cell lines, with IC50 values of 35.78 ± 0.863 μM and 57.62 μM ± 0.871, comparing sorafenib’s IC50 values of 5.95 ± 0.917 μM and 8.45 ± 0.912 μM. Furthermore, compound 10 demonstrated a lower level of toxicity towards Vero cell lines, with an IC50 value of 127.3 μM. Likewise, compound 10 induced apoptosis in HepG2 cell lines through a flow cytometric analysis in addition to an increase in the levels of caspase-3 and caspase-9. Moreover, compound 10 hindered the migration and healing abilities of HepG2 cells. In conclusion, our study positions compound 10 as a promising candidate for further chemical modifications and biological evaluations.
研究人员设计了一种新的烟酰胺衍生物--(E)-N-(4-(1-(2-(4-苯甲酰胺苯甲酰基)腙)乙基)苯基)烟酰胺,作为 VEGFR-2 抑制剂。利用密度泛函理论(DFT)计算,确定了所设计化合物的三维结构,从而揭示了其稳定性和反应活性。分子对接显示了其抑制 VEGFR-2 的能力,分子动力学(MD)模拟进一步证实了其与靶蛋白的结合。此外,分子力学-广义生比表面积(MM-GBSA)、蛋白质-配体相互作用剖析器(PLIP)和基本动力学研究进一步验证了该化合物与最佳能量的精确结合。然后,合成了 "化合物 10 "并进行了体外试验。化合物 10 抑制 VEGFR-2 的 IC50 值为 105.4 ± 0.896 nM,而索拉非尼的 IC50 值为 61.65 ± 0.934 nM。此外,它还对 HepG2 和 MCF-7 癌细胞株具有细胞毒性,IC50 值分别为 35.78 ± 0.863 μM 和 57.62 μM ± 0.871,而索拉非尼的 IC50 值分别为 5.95 ± 0.917 μM 和 8.45 ± 0.912 μM。此外,化合物 10 对 Vero 细胞株的毒性较低,IC50 值为 127.3 μM。同样,通过流式细胞分析,化合物 10 除了增加了 caspase-3 和 caspase-9 的水平外,还诱导了 HepG2 细胞株的凋亡。此外,化合物 10 还阻碍了 HepG2 细胞的迁移和愈合能力。总之,我们的研究将化合物 10 定位为有希望进一步进行化学修饰和生物学评估的候选化合物。
{"title":"Design and In Silico and In Vitro Evaluations of a Novel Nicotinamide Derivative as a VEGFR-2 Inhibitor","authors":"Ibrahim H. Eissa, Muhammad Abd ElGayed Bkrah, Reda G. Yousef, Hazem Elkady, Eslam B. Elkaeed, Bshra A. Alsfouk, Ibrahim M. Ibrahim, Ahmed M. Metwaly, Dalal Z. Husein","doi":"10.1155/2024/2176512","DOIUrl":"https://doi.org/10.1155/2024/2176512","url":null,"abstract":"A new nicotinamide derivative, (<i>E</i>)-<i>N</i>-(4-(1-(2-(4-benzamidobenzoyl)hydrazone)ethyl)phenyl)nicotinamide, was designed as a VEGFR-2 inhibitor. Utilizing the density functional theory (DFT) calculations, the three-dimensional structure of the designed compound was determined, shedding light on its stability and reactivity. Molecular docking revealed its capability to inhibit VEGFR-2, which was further supported by molecular dynamics (MD) simulations confirming its binding to the target protein. In addition, molecular mechanics-generalized born surface area (MM-GBSA), protein-ligand interactions profiler (PLIP), and essential dynamics studies provided further validation of the compound’s precise binding with optimal energy. Then, the “compound <b>10</b>” was synthesized and subjected to <i>in vitro</i> assays. Compound <b>10</b> inhibited VEGFR-2 with an IC<sub>50</sub> value of 105.4 ± 0.896 nM, comparing sorafenib’s IC<sub>50</sub> value of 61.65 ± 0.934 nM. Besides, it exhibited cytotoxicity against HepG2 and MCF-7 cancer cell lines, with IC<sub>50</sub> values of 35.78 ± 0.863 <i>μ</i>M and 57.62 <i>μ</i>M ± 0.871, comparing sorafenib’s IC<sub>50</sub> values of 5.95 ± 0.917 <i>μ</i>M and 8.45 ± 0.912 <i>μ</i>M. Furthermore, compound <b>10</b> demonstrated a lower level of toxicity towards Vero cell lines, with an IC<sub>50</sub> value of 127.3 <i>μ</i>M. Likewise, compound <b>10</b> induced apoptosis in HepG2 cell lines through a flow cytometric analysis in addition to an increase in the levels of caspase-3 and caspase-9. Moreover, compound <b>10</b> hindered the migration and healing abilities of HepG2 cells. In conclusion, our study positions compound <b>10</b> as a promising candidate for further chemical modifications and biological evaluations.","PeriodicalId":15348,"journal":{"name":"Journal of Chemistry","volume":"44 1","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140007649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sea Urchin-Like MnO2/Biomass Carbon Composite Electrode Material for High-Performance Supercapacitors 用于高性能超级电容器的海胆状 MnO2/生物质碳复合电极材料
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-02-27 DOI: 10.1155/2024/2779104
Xiaoyu Zhao, Ning Wang, Lei Li, Zixun Fang, Shoufeng Tang, Jianmin Gu
Manganese oxide materials for high-performance supercapacitors are as popular electrode materials of energy storage devices based on their high theoretical capacitance. However, its development is limited by its poor electrical conductivity and insufficient contact surface area, which causes the supercapacitor to fail to achieve its theoretical specific capacitance. In this paper, unique sea urchin-like MnO2/biomass carbon (BC) composite materials were prepared for supercapacitors, showing the lower resistance compared with pure MnO2, which possesses superior electrochemical performance due to the advances in outstanding electrical conductivity. The single electrode test results show that the composite material achieves a specific capacitance of 205.5 F·g−1 at the current density of 0.5 A·g−1; with the current density increasing by a factor of 20, the supercapacitor loaded with this composite still retained 63.2% of its initial capacitance, showing its high rate performance. Meanwhile, the constructed asymmetric supercapacitor can change the color of electrochromic devices and drive the light of electrochemiluminescent devices, indicating its promising application. This work provided a promising route for the rational construction of multiple dimensioned high-performance electrode materials for use in new energy storage devices.
用于高性能超级电容器的氧化锰材料因其理论电容较高而成为储能设备的常用电极材料。然而,由于其导电性差、接触表面积不足,导致超级电容器无法达到理论比电容,从而限制了其发展。本文制备了独特的超级电容器用海胆状 MnO2/ 生物质碳(BC)复合材料,与纯 MnO2 相比,MnO2 的电阻更低,其优异的导电性能使其具有更优越的电化学性能。单电极测试结果表明,在电流密度为 0.5 A-g-1 时,复合材料的比电容达到 205.5 F-g-1;在电流密度增加 20 倍的情况下,装载该复合材料的超级电容器仍能保持 63.2% 的初始电容,显示出其高倍率性能。同时,所构建的不对称超级电容器可以改变电致变色装置的颜色,并驱动电致化学发光装置发光,表明其具有广阔的应用前景。这项工作为合理构建用于新型储能设备的多维高性能电极材料提供了一条可行的途径。
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引用次数: 0
Antioxidant and Neuroproliferative Effects of THL-3-PTD5 Peptide Derived from Hydramacin-1 Antimicrobial Peptide 从 Hydramacin-1 抗菌肽中提取的 THL-3-PTD5 肽的抗氧化和神经增生作用
IF 3 4区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-02-24 DOI: 10.1155/2024/8897847
Ping-Chien Lee, Ching-Chun Lin, Hui-Hsuan Hsu, Feng-Di T. Lung
Parkinson’s disease (PD) is a neurodegenerative disorder characterized by reduced dopamine levels in the brain, affecting over 6 million people worldwide. While current treatments for patients primarily focus on symptom relief, there is a necessity for the development of novel therapeutic agents due to the presence of side effects and declining effectiveness. Functional peptides, known for their high selectivity, specificity, and diverse bioactivities, have shown the potential to develop therapeutic candidates for neurodegenerative diseases. Notably, the macin family of proteins exhibits potent antimicrobial activity and nerve repair effects. In this study, we investigated the antioxidant activity and neuroproliferative effects of a series of truncated peptides (THL, THL-1, THL-2, and THL-3) derived from the C-terminal sequence of hydramacin-1. Results showed that THL-3 exhibited the strongest antioxidant activity (EC50 of 22.5 μM) in ABTS-radical scavenging assays, with amino acid residues Cys5, Pro6, Leu7, Lys9, and Lys10 playing critical roles in its activity. Upon conjugation with the cell-penetrating PTD5 peptide to form THL-3-PTD5, it exhibited a significant dose-dependent neuroproliferative effect, increasing the viability of SH-SY5Y cells by 118% at 100 μM. However, it did not exhibit neuroprotective effects under in vitro conditions of oxidative stress induced by an exogenous oxidizing agent. This study suggests that THL-3-PTD5 may serve as a potential candidate for developing therapeutic agents against neurodegenerative diseases.
帕金森病(Parkinson's disease,PD)是一种神经退行性疾病,其特征是大脑中多巴胺水平降低,全球有 600 多万人受到该病的影响。虽然目前对患者的治疗主要集中在缓解症状上,但由于副作用的存在和疗效的下降,有必要开发新型治疗药物。功能肽以其高选择性、特异性和多样化的生物活性而著称,已显示出开发神经退行性疾病候选疗法的潜力。值得注意的是,macin 蛋白家族具有强大的抗菌活性和神经修复作用。在这项研究中,我们研究了一系列截短肽的抗氧化活性和神经增殖效应(THL、THL-1、THL-2 和 THL-3),这些肽来源于水黄素-1 的 C 端序列。结果表明,在 ABTS 自由基清除试验中,THL-3 表现出最强的抗氧化活性(EC50 为 22.5 μM),其中 Cys5、Pro6、Leu7、Lys9 和 Lys10 等氨基酸残基对其活性起着关键作用。在与细胞穿透性 PTD5 多肽共轭形成 THL-3-PTD5 后,它表现出显著的剂量依赖性神经增殖效应,在 100 μM 时可将 SH-SY5Y 细胞的存活率提高 118%。然而,在外源性氧化剂诱导的体外氧化应激条件下,它并没有表现出神经保护作用。这项研究表明,THL-3-PTD5 可作为开发神经退行性疾病治疗药物的潜在候选物质。
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