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An approach for analysing the impact of data integration on complex network diffusion models 一种分析数据集成对复杂网络扩散模型影响的方法
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-06-23 DOI: 10.1093/comnet/cnad025
J. Nevin, Paul Groth, M. Lees
Complex networks are a powerful way to reason about systems with non-trivial patterns of interaction. The increased attention in this research area is accelerated by the increasing availability of complex network data sets, with data often being reused as secondary data sources. Typically, multiple data sources are combined to create a larger, fuller picture of these complex networks and in doing so scientists have to make sometimes subjective decisions about how these sources should be integrated. These seemingly trivial decisions can sometimes have significant impact on both the resultant integrated networks and any downstream network models executed on them. We highlight the importance of this impact in online social networks and dark networks, two use-cases where data are regularly combined from multiple sources due to challenges in measurement or overlap of networks. We present a method for systematically testing how different, realistic data integration approaches can alter both the networks themselves and network models run on them, as well as an associated Python package (NIDMod) that implements this method. A number of experiments show the effectiveness of our method in identifying the impact of different data integration setups on network diffusion models.
复杂网络是对具有重要交互模式的系统进行推理的有力方法。复杂网络数据集的可用性不断增加,数据经常被用作辅助数据源,这加快了对这一研究领域的关注。通常情况下,多个数据源被结合起来,以创建一个更大、更全面的这些复杂网络的图像,在这样做的过程中,科学家有时不得不对如何整合这些数据源做出主观的决定。这些看似微不足道的决策有时会对最终的集成网络和在其上执行的任何下游网络模型产生重大影响。我们强调这种影响在在线社交网络和暗网络中的重要性,这两个用例中,由于测量或网络重叠方面的挑战,数据经常从多个来源组合在一起。我们提出了一种方法,用于系统地测试不同的、现实的数据集成方法如何改变网络本身和在其上运行的网络模型,以及实现此方法的相关Python包(NIDMod)。许多实验表明,我们的方法在识别不同数据集成设置对网络扩散模型的影响方面是有效的。
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引用次数: 0
Spectral techniques for measuring bipartivity and producing partitions 测量双分性和产生分区的光谱技术
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-06-23 DOI: 10.1093/comnet/cnad026
Azhar Aleidan, P. Knight
Complex networks can often exhibit a high degree of bipartivity. There are many well-known ways for testing this, and in this article, we give a systematic analysis of characterizations based on the spectra of the adjacency matrix and various graph Laplacians. We show that measures based on these characterizations can be drastically different results and leads us to distinguish between local and global loss of bipartivity. We test several methods for finding approximate bipartitions based on analysing eigenvectors and show that several alternatives seem to work well (and can work better than more complex methods) when augmented with local improvement.
复杂的网络常常表现出高度的双方性。有许多众所周知的方法来测试这一点,在本文中,我们给出了基于邻接矩阵谱和各种图拉普拉斯算子的表征的系统分析。我们表明,基于这些特征的措施可能会产生截然不同的结果,并导致我们区分局部和全球双方性损失。我们测试了几种基于分析特征向量来寻找近似双分区的方法,并表明当增加局部改进时,几种替代方法似乎工作得很好(并且可以比更复杂的方法更好)。
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引用次数: 0
Improving mean-field network percolation models with neighbourhood information 利用邻域信息改进平均场网络渗流模型
4区 数学 Q2 Mathematics Pub Date : 2023-06-23 DOI: 10.1093/comnet/cnad029
Chris Jones, Karoline Wiesner
Abstract Mean field theory models of percolation on networks provide analytic estimates of network robustness under node or edge removal. We introduce a new mean field theory model based on generating functions that includes information about the tree-likeness of each node’s local neighbourhood. We show that our new model outperforms all other generating function models in prediction accuracy when testing their estimates on a wide range of real-world network data. We compare the new model’s performance against the recently introduced message-passing models and provide evidence that the standard version is also outperformed, while the ‘loopy’ version is only outperformed on a targeted attack strategy. As we show, however, the computational complexity of our model implementation is much lower than that of message-passing algorithms. We provide evidence that all discussed models are poor in predicting networks with highly modular structure with dispersed modules, which are also characterized by high mixing times, identifying this as a general limitation of percolation prediction models.
网络渗透的平均场理论模型提供了节点或边缘去除情况下网络鲁棒性的分析估计。我们引入了一种新的基于生成函数的平均场理论模型,该模型包含了每个节点局部邻域的树形信息。当在广泛的真实网络数据上测试它们的估计时,我们表明我们的新模型在预测精度方面优于所有其他生成函数模型。我们将新模型的性能与最近引入的消息传递模型进行比较,并提供证据表明标准版本也优于标准版本,而“循环”版本仅在有针对性的攻击策略上优于标准版本。然而,正如我们所展示的,我们的模型实现的计算复杂度远低于消息传递算法。我们提供的证据表明,所有讨论的模型在预测具有分散模块的高度模块化结构的网络时都很差,这些网络也具有高混合时间的特征,这是渗透预测模型的一般局限性。
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引用次数: 0
Hypergraph Artificial Benchmark for Community Detection (h–ABCD) 社区检测的超图人工基准
4区 数学 Q2 Mathematics Pub Date : 2023-06-23 DOI: 10.1093/comnet/cnad028
Bogumił Kamiński, Paweł Prałat, François Théberge
Abstract The Artificial Benchmark for Community Detection (ABCD) graph is a recently introduced random graph model with community structure and power-law distribution for both degrees and community sizes. The model generates graphs with similar properties as the well-known Lancichinetti, Fortunato, Radicchi (LFR) one, and its main parameter ξ can be tuned to mimic its counterpart in the LFR model, the mixing parameter μ. In this article, we introduce hypergraph counterpart of the ABCD model, h–ABCD, which also produces random hypergraph with distributions of ground-truth community sizes and degrees following power-law. As in the original ABCD, the new model h–ABCD can produce hypergraphs with various levels of noise. More importantly, the model is flexible and can mimic any desired level of homogeneity of hyperedges that fall into one community. As a result, it can be used as a suitable, synthetic playground for analyzing and tuning hypergraph community detection algorithms. [Received on 22 October 2022; editorial decision on 18 July 2023; accepted on 19 July 2023]
ABCD (Artificial Benchmark for Community Detection)图是近年来提出的一种随机图模型,它具有社团结构和社团大小的幂律分布。该模型生成的图与著名的Lancichinetti, Fortunato, Radicchi (LFR)模型具有相似的性质,并且其主要参数ξ可以被调整以模拟LFR模型中的对应参数,即混合参数μ。在本文中,我们引入了ABCD模型的对应超图h-ABCD, h-ABCD也产生了基于真值社区大小和度服从幂律分布的随机超图。与原来的ABCD一样,新模型h-ABCD可以产生具有不同程度噪声的超图。更重要的是,该模型是灵活的,可以模拟属于一个社区的任何期望级别的超边缘同质性。因此,它可以作为一个合适的综合平台,用于分析和调优超图社区检测算法。[2022年10月22日收到;2023年7月18日的编辑决定;于2023年7月19日接受]
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引用次数: 0
PageRank centrality with non-local random walk-based teleportation 基于非局部随机移动的PageRank中心性
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-06-23 DOI: 10.1093/comnet/cnad024
David Bowater, E. Stefanakis
PageRank is a popular measure of centrality that is often applied to rank nodes in real-world networks. However, in many cases, the notion of teleportation is counterintuitive because it implies that whatever is moving around the network will jump or ‘teleport’ directly from one node to any other, without considering how far apart the nodes are. To overcome this issue, we propose here a general measure of PageRank centrality whereby the teleportation probabilities depend, in some way, on the distance separating the nodes. We accomplish this by drawing upon recent advances in non-local random walks, which allow the proposed measure to be tailored for various real-world networks and applications. To illustrate the flexibility of the proposed measure and to demonstrate how it differs from PageRank centrality, we present and discuss experimental results for a selection of real-world spatial and social networks, including an air transportation network, a collaboration network and an urban street network.
PageRank是一种流行的中心性度量,通常用于对现实世界网络中的节点进行排名。然而,在许多情况下,隐形传态的概念是违反直觉的,因为它意味着任何在网络上移动的东西都会直接从一个节点跳到另一个节点,而不考虑节点之间的距离。为了克服这个问题,我们在这里提出了一个通用的PageRank中心性度量,其中隐形传态概率在某种程度上取决于节点之间的距离。我们通过借鉴非局部随机漫步的最新进展来实现这一目标,这使得所提出的措施能够针对各种现实世界的网络和应用进行定制。为了说明所提议措施的灵活性,并展示它与PageRank中心性的不同之处,我们提出并讨论了一系列现实世界空间和社会网络的实验结果,包括航空运输网络、协作网络和城市街道网络。
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引用次数: 0
A multi-level generative framework for community detection in attributed networks 属性网络中社区检测的多级生成框架
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-04-21 DOI: 10.1093/comnet/cnad020
Yimei Zheng, Caiyan Jia, Xuanya Li
Community detection in attributed networks is one of the most important tasks in complex network analysis. Many existing methods propose to integrate the network topology and node attribute from a generative aspect, which models an attributed network as a probabilistic generation process with the community distribution described by hidden variables. Though they can provide good interpretability to the community structure, it is difficult to infer community membership quickly due to their high computational complexity when inferring. Motivated by the multi-level strategy, in this study, we propose a multi-level generative framework to reduce the time cost of generative models for community detection in attributed networks. We first coarsen an attributed network into smaller ones by node matching. Then, we employ the existing generative model on the coarsest network without any modification for community detection, thus efficiently obtaining community memberships of nodes in this small coarsest network. Last, we project the assignments back to the original network through a local refinement mechanism to get communities. Extensive experiments on several real-world and artificial attributed networks show that our multi-level-based method is significantly faster than original generative models and is able to achieve better or more competitive results.
属性网络中的社区检测是复杂网络分析中的重要任务之一。现有的许多方法从生成的角度将网络拓扑与节点属性相结合,将属性网络建模为一个概率生成过程,该过程具有隐变量描述的群体分布。虽然它们可以为社区结构提供很好的可解释性,但由于在推断时计算复杂度高,难以快速推断社区成员。在多级策略的激励下,本研究提出了一种多级生成框架,以减少属性网络中社区检测生成模型的时间成本。我们首先通过节点匹配将一个属性网络粗化成更小的网络。然后,我们在不做任何修改的情况下,在最粗网络上使用现有的生成模型进行社区检测,从而有效地获得这个小型最粗网络中节点的社区隶属度。最后,我们通过局部优化机制将分配映射回原始网络以获得社区。在几个真实世界和人工属性网络上的大量实验表明,我们的基于多层的方法比原始的生成模型要快得多,并且能够获得更好或更具竞争力的结果。
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引用次数: 0
Information-based estimation of causality networks from high-dimensional multivariate time series 基于信息的高维多元时间序列因果网络估计
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-04-21 DOI: 10.1093/comnet/cnad015
Akylas Fotiadis, D. Kugiumtzis
One of the most challenging aspects in the study of the complex dynamical systems is the estimation of their underlying, interdependence structure. Being in the era of Big Data, this problem gets even more complicated since more observed variables are available. To estimate direct causality effects in this setting, dimension reduction has to be employed in the Granger causality measure. The measure should also be capable to detect non-linear effects, persistently present in real-world complex systems. The model-free information-based measure of partial mutual information from mixed embedding (PMIME) has been developed to address these issues and it was found to perform well on multivariate time series of moderately high dimension. Here, the problem of forming complex networks from direct, possibly non-linear, high-dimensional time series at the order of hundreds is investigated. The performance of the measure PMIME is tested on two coupled dynamical systems in discrete time (coupled Hénon maps) and continuous time (coupled Mackey–Glass delay differential equations). It is concluded that the correct detection of the underlying causality network depends mainly on the network density rather than on its size (number of nodes). Finally, the effect of network size is investigated in the study of the British stock market in the period around Brexit.
在复杂动力系统的研究中,最具挑战性的方面之一是对其潜在的相互依存结构的估计。在大数据时代,这个问题变得更加复杂,因为有更多的观察变量可用。为了估计在这种情况下的直接因果关系效应,在格兰杰因果关系测度中必须采用降维。该措施还应该能够检测非线性效应,持续存在于现实世界的复杂系统。基于无模型信息的混合嵌入部分互信息度量(PMIME)已被开发用于解决这些问题,并被发现在中高维的多变量时间序列上表现良好。本文研究了由直接的、可能是非线性的、高维的数百阶时间序列形成复杂网络的问题。在离散时间(耦合hsamnon映射)和连续时间(耦合Mackey-Glass延迟微分方程)两个耦合动力系统上测试了PMIME测度的性能。由此得出结论,对潜在因果网络的正确检测主要取决于网络密度,而不是其大小(节点数)。最后,通过对英国脱欧前后英国股票市场的研究,考察了网络规模的影响。
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引用次数: 0
Network of compression networks to extract useful information from multivariate time series 网络压缩网络从多变量时间序列中提取有用信息
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-04-21 DOI: 10.1093/comnet/cnad018
David M Walker, Débora C. Corrêa
Compression networks are the result of a recently proposed method to transform univariate time series to a complex network representation by using a compression algorithm. We show how a network of compression networks can be constructed to capture relationships among multivariate time series. This network is a weighted graph with edge weights corresponding to how well the compression codewords of one time series compress another time series. Subgraphs of this network obtained by thresholding of the relative compression edge weights are shown to possess properties which can track dynamical change. Furthermore, community structures—groups of vertices more densely connected together—within these networks can identify partially synchronized states in the dynamics of networked oscillators, as well as perform genre classification of musical compositions. An additional example incorporates temporal windowing of the data and demonstrates the potential of the method to identify tipping point behaviour through the analysis of multivariate electroencephalogram time series of patients undergoing seizure.
压缩网络是最近提出的一种利用压缩算法将单变量时间序列转换为复杂网络表示的方法的结果。我们展示了如何构建一个压缩网络网络来捕获多元时间序列之间的关系。该网络是一个加权图,其边缘权重对应于一个时间序列的压缩码字对另一个时间序列的压缩程度。通过对相对压缩边权值进行阈值处理得到的网络子图具有跟踪动态变化的特性。此外,在这些网络中,社区结构——更紧密连接在一起的顶点群——可以识别网络振荡器动态中的部分同步状态,以及对音乐作品进行类型分类。另一个例子结合了数据的时间窗口,并展示了该方法通过分析癫痫发作患者的多变量脑电图时间序列来识别临界点行为的潜力。
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引用次数: 1
Neuronal motifs reveal backbone structure and influential neurons of neural network in C. elegans 神经元基序揭示了秀丽隐杆线虫神经网络的骨干结构和有影响的神经元
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-04-21 DOI: 10.1093/comnet/cnad013
Jian Liu, Ye Yuan, Peng Zhao, Xiao Gu, H. Huo, Zhaoyu Li, T. Fang
Neural network elements such as motif, backbone and influential nodes play important roles in neural network computation. Increasing researches have been applying complex network methods in order to identify different essential structures within complex neural networks. However, the distinct properties of synapses that build the neural network are often neglected, such as the difference between chemical synapses and electrical synapses. By separating these distinct synapses, we can identify a novel repertoire of neural motifs and greatly expand neural motif families in neural systems. Based on the expanded motif families, we further propose a novel neural-motif-based algorithm to extract the backbone in the neural network. The backbone circuit we extracted from Caenorhabditis elegans connectome controls an essential motor behaviour in C. elegans. Furthermore, we develop a novel neural-motif-based algorithm to identify influential neurons. Compared with the influential neurons identified using existing methods, the neurons identified in this work provide more information in related to their functions. These methods have been successfully applied to identify a series of network features in C. elegans, providing a biologically interpretable way of exploring the structure of neural network.
基序、骨干和影响节点等神经网络元素在神经网络计算中起着重要作用。越来越多的研究应用复杂网络方法来识别复杂神经网络中不同的基本结构。然而,构建神经网络的突触的独特特性经常被忽视,比如化学突触和电突触之间的区别。通过分离这些不同的突触,我们可以识别出新的神经基序,并大大扩展神经系统中的神经基序家族。在扩展基序家族的基础上,我们进一步提出了一种新的基于神经基序的神经网络主干提取算法。我们从秀丽隐杆线虫的连接组中提取的主干电路控制秀丽隐杆线虫的基本运动行为。此外,我们开发了一种新的基于神经图案的算法来识别有影响的神经元。与使用现有方法识别的有影响的神经元相比,本研究中识别的神经元提供了更多与其功能相关的信息。这些方法已成功地应用于线虫的一系列网络特征的识别,为探索神经网络的结构提供了一种生物学上可解释的方法。
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引用次数: 0
A distributed adaptive routing against selective forwarding attack in scale-free network considering cascading failure 考虑级联故障的无标度网络中抗选择性转发攻击的分布式自适应路由
IF 2.1 4区 数学 Q2 Mathematics Pub Date : 2023-04-21 DOI: 10.1093/comnet/cnad021
Rong-rong Yin, Xuyao Ma, Huaili Yuan, Mengfa Zhai, Changjiang Guo
To address the issues of data insecurity and unreliable transmission, redundancy-based data recovery can guarantee data security, but the increase of redundant data will reduce the robustness of network in the face of cascading failures. A distributed adaptive routing method in scale-free network is proposed to improve network resilience against selective forwarding attacks and the robustness against cascading failures. Based on the polynomial principle, the proposed routing method slices packets, adds redundancy reasonably and adopts multipath sequential routing method to completely send data to the destination node. The ability to resist selective forwarding attacks and robustness against cascading failures is investigated and analysed throughout the entire network operation. Simulation results show that our proposed routing method is not restricted by the number of disjoint paths, can maintain a higher data recovery ratio and resist effectively selective forwarding attacks, and also balances the network load well. Moreover, this routing method has a lower end-to-end latency for data transmission and is highly resistant to cascading failures under random and intentional attacks.
为了解决数据不安全和传输不可靠的问题,基于冗余的数据恢复可以保证数据的安全性,但面对级联故障,冗余数据的增加会降低网络的鲁棒性。为了提高网络对选择性转发攻击的弹性和对级联故障的鲁棒性,提出了一种无标度网络中的分布式自适应路由方法。该路由方法基于多项式原理,对数据包进行切片,合理增加冗余,采用多径顺序路由方式将数据完整地发送到目的节点。在整个网络运行中,研究和分析了抵抗选择性转发攻击和抗级联故障的鲁棒性的能力。仿真结果表明,本文提出的路由方法不受不连接路径数量的限制,能够保持较高的数据恢复率,有效抵御选择性转发攻击,并能很好地平衡网络负载。此外,这种路由方式具有较低的端到端数据传输延迟,并且具有很强的抗随机攻击和故意攻击下的级联故障能力。
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引用次数: 0
期刊
Journal of complex networks
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