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Failure of durlobactam to restore the susceptibility to meropenem in carbapenem-resistant Klebsiella pneumoniae. 杜氯巴坦未能恢复耐碳青霉烯肺炎克雷伯菌对美罗培南的敏感性。
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-06 DOI: 10.1016/j.jgar.2026.03.002
Hongxia Wen, Yu Feng, Zhiyong Zong

Objective: Durlobactam, a diazabicyclooctane β-lactamase inhibitor, can protect meropenem from hydrolysis of KPC and OXA-48 carbapenemases. This study aims to characterize the genome of a carbapenem-resistant Klebsiella pneumoniae (CRKP) clinical strain with high MIC (256 mg/L) of meropenem in the presence of durlobactam.

Methods: The strain was recovered from bile and MICs of meropenem-durlobactam and sulbactam-durlobactam were determined using broth microdilution. Its genome was sequenced using Illumina platform and were analyzed for antimicrobial resistance genes and virulence factors using a set of bioinformatic tools.

Results: The strain belonged to sequence type 11 and capsular type 64, harbored carbapenemase gene blaKPC-2, and carried virulence factors encoding aerobactin, (iutA-iuc), yersiniabactin (irp-ybt) and mucoid regulators (rmpADC and rmpA2), suggesting enhanced virulence. MICs of meropenem-durlobactam and sulbactam-durlobactam against this strain were both 256/4 mg/L.

Conclusion: A KPC-2-producing CRKP with non-susceptibility to meropenem-durlobactam, possibly linking to porin LamB deficiency and absence of outer membrane assembly protein AsmA, was identified. This uncovers a new challenge caused by antimicrobial resistance, calling more surveillance.

目的:重氮比环辛烷β-内酰胺酶抑制剂Durlobactam对KPC和OXA-48碳青霉烯酶水解美罗培南具有保护作用。本研究旨在表征一株耐碳青霉烯肺炎克雷伯菌(CRKP)临床菌株的基因组特征,该菌株在durlobactam存在下具有高MIC (256 mg/L)的美罗培南。方法:从胆汁中提取菌株,用微量肉汤稀释法测定美罗培尼-杜氯巴坦和舒巴坦-杜氯巴坦的mic。利用Illumina平台对其基因组进行测序,并利用生物信息学工具分析其耐药基因和毒力因子。结果:该菌株序列类型为11型,荚膜类型为64型,携带碳青霉烯酶基因blaKPC-2,毒力因子编码有氧肌动蛋白(iutA-iuc)、yersiabactin (irp-ybt)和黏液调节因子(rmmpadc和rmpA2),毒力增强。美罗培宁-杜氯巴坦和舒巴坦-杜氯巴坦对该菌株的mic均为256/4 mg/L。结论:鉴定出一种产kpc -2的CRKP,该CRKP对美罗培尼-杜罗巴坦不敏感,可能与孔蛋白LamB缺乏和外膜组装蛋白AsmA缺失有关。这揭示了由抗菌素耐药性引起的新挑战,需要更多的监测。
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引用次数: 0
Genome analysis of blaNDM-5 and blaKPC-2 co-occurrence in ST45-K62 carbapenem-resistant Klebsiella pneumoniae isolate from China. 耐碳青霉烯肺炎克雷伯菌ST45-K62株blaNDM-5和blaKPC-2共存的基因组分析
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-03 DOI: 10.1016/j.jgar.2026.02.014
Qiang Li, Zhenzhen Dong, Li Ma, Xi Yang

Objectives: This study aimed to delineate the genomic architecture of a ST45-K62 Klebsiella pneumoniae strain identified as the first global isolate co-carrying blaKPC-2 and blaNDM-5.

Methods: Antimicrobial susceptibility was determined using broth microdilution. Whole-genome sequencing was performed using the Illumina HiSeq X-10 and PacBio RS II platforms, and genomic features were analyzed using various bioinformatics tools.

Results: HRKP01 showed resistance to most tested antibiotics, being susceptible only to amikacin. It was classified as sequence type (ST) 45 and K-locus type (K) 62. The genome of HRKP01 consisted of a 5,329,093 bp chromosome and three plasmids of 283,811 bp, 122,964 bp and 57,031 bp in length. Comprehensive sequence analysis revealed 12 antimicrobial resistance genes, including blaKPC-2 and blaNDM-5. Virulence factor screening further demonstrated the presence of numerous virulence-associated genes in this isolate. The blaNDM-5 gene is immediately flanked upstream by ISkox3-IS26-bleMBL at a 2-bp interval, and by Tn3-IS3000-IS5 on the other side at a 14-bp interval. Pan-genome analysis revealed a highly conserved core genome but pronounced accessory genome diversity.

Conclusion: To our knowledge, this is the first genomic report of a ST45-K62 K. pneumoniae isolate harboring both blaKPC-2 and blaNDM-5 genes. The pHRKP01-NDM5 harboring blaNDM-5 contains multiple mobile genetic elements (MGEs).

目的:本研究旨在描述一株ST45-K62肺炎克雷伯菌的基因组结构,该菌株被确定为全球首个共携带blaKPC-2和blaNDM-5的分离株。方法:采用微量肉汤稀释法测定药敏。使用Illumina HiSeq X-10和PacBio RS II平台进行全基因组测序,并使用各种生物信息学工具分析基因组特征。结果:HRKP01对大部分抗菌药物均有耐药,仅对阿米卡星敏感。分类为序列型(ST) 45型和K位点型(K) 62型。HRKP01基因组由5329093 bp的染色体和长度分别为283811 bp、122964 bp和57031 bp的质粒组成。综合序列分析发现12个耐药基因,包括blaKPC-2和blaNDM-5。毒力因子筛选进一步证明了该分离物中存在许多毒力相关基因。blaNDM-5基因在上游与ISkox3-IS26-bleMBL以2-bp的间隔相连,在另一侧与Tn3-IS3000-IS5以14-bp的间隔相连。泛基因组分析显示核心基因组高度保守,但辅助基因组多样性明显。结论:据我们所知,这是首例同时携带blaKPC-2和blaNDM-5基因的ST45-K62肺炎克雷伯菌分离株的基因组报道。携带blaNDM-5的pHRKP01-NDM5含有多个移动遗传元件(MGEs)。
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引用次数: 0
Complete genome sequences and structural variants of pESI-like plasmids in multidrug-resistant Salmonella Infantis carrying blaCTX-M-65 from retail chicken meat in South Korea 韩国零售鸡肉中携带blaCTX-M-65的多重耐药婴儿沙门氏菌的全基因组序列和pesi样质粒的结构变异
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-01-21 DOI: 10.1016/j.jgar.2026.01.005
Tae-Min La , Taesoo Kim , Sang-Won Lee , Ji-Yeon Hyeon

Objective

This study reports complete chromosome and pESI-like megaplasmid sequences of multidrug-resistant Salmonella enterica serovar Infantis (S. Infantis) isolates obtained from retail chicken meat in South Korea in 2023 and characterizes their antimicrobial resistance (AMR) gene repertoire and the structural diversity of their pESI-like plasmids.

Methods

Twenty-one multidrug-resistant S. Infantis isolates were subjected to whole-genome sequencing using Illumina NextSeq and Oxford Nanopore MinION platforms. Hybrid assemblies were generated using Trycycler v0.5.0 and corrected using Polypolish v1.2.3. AMR genes were identified, and plasmid structures were reconstructed and visualized using Proksee.

Results

All isolates belonged to sequence type ST32 and carried pESI-like megaplasmid encoding multiple AMR genes. Conserved resistance genes included aac(3)-IVa, aph(4)-Ia, blaCTX-M-65, and tet(A), while ant(3″)-Ia, aph(3′)-Ia, dfrA14, floR, and sul1 were variably present. Comparative plasmid analysis revealed six plasmid structural variants (Types A–F), primarily distinguished by deletions within AMR regions. Type A retained all resistance loci, whereas Types B–F exhibited partial loss of regions harbouring aph(3′)-Ia, dfrA14, floR, or sul1. Comparative plasmid mapping showed that the Korean pESI-like plasmids exhibited high overall structural similarity to internationally reported pESI-like plasmids, including those from the UK and USA.

Conclusions

These complete genome sequences expand the current knowledge of pESI-like plasmid diversity in S. Infantis and highlight their role in the dissemination of multidrug resistance in the poultry sector. Continued genomic surveillance is warranted to monitor the emergence and spread of high-risk S. Infantis clones across the food chain.
目的:本研究报道了2023年从韩国零售鸡肉中获得的多重耐药肠沙门氏菌血清型婴儿(S. Infantis)分离株的完整染色体和pesi样巨型质粒序列,并对其抗微生物基因库及其pesi样质粒的结构多样性进行了表征。方法:采用Illumina NextSeq和Oxford Nanopore MinION平台对21株耐多药婴儿链球菌进行全基因组测序。混合组件使用Trycycler v0.5.0生成,并使用Polypolish v1.2.3进行校正。对AMR基因进行鉴定,利用Proksee软件对质粒结构进行重构和可视化。结果:所有分离株均为ST32序列型,携带编码多个AMR基因的pesi样巨质粒。保守的耐药基因包括aac(3)-IVa、aph(4)-Ia、blaCTX-M-65和tet(A),而ant(3”)-Ia、aph(3”)-Ia、dfrA14、floR和sul1等基因存在差异。质粒比较分析揭示了6种质粒结构变异(A-F型),主要由AMR区域的缺失来区分。A型保留了所有的抗性位点,而B-F型则部分丢失了含有aph(3′)-Ia、dfrA14、floR或sul1的区域。比较质粒定位显示,韩国pesi样质粒与国际上报道的pesi样质粒(包括来自英国和美国的质粒)具有高度的整体结构相似性。结论:这些完整的基因组序列扩展了目前对S. Infantis pesi样质粒多样性的了解,并突出了它们在家禽业多药耐药传播中的作用。有必要继续进行基因组监测,以监测高风险婴儿链球菌克隆在整个食物链中的出现和传播。
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引用次数: 0
Occurrence of ESBL and carbapenemase producers and polymyxin- and fosfomycin-resistant Enterobacterales among pets in a veterinary clinic, Egypt 埃及兽医诊所宠物中广谱β-内酰胺酶和碳青霉烯酶产生菌以及多粘菌素和磷霉素耐药肠杆菌的发生
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-01-19 DOI: 10.1016/j.jgar.2026.01.006
Atef Oreiby , Samanta Freire , Alaaeldin Mohamed Saad , Mohamed A. Donia , Hazim O. Khalifa , Patrice Nordmann , Laurent Poirel , Mustafa Sadek

Objectives

This study investigates the transmission risk of ESBL producers, carbapenemase producers, polymyxin-resistant, and fosfomycin-resistant Enterobacterales from healthy and sick dogs and cats in Tanta governorate, Nile Delta region, Egypt.

Methods

A total of 206 different samples were collected from healthy and sick pets. Samples were screened for different resistance mechanisms using mSuperCarba, SuperPolymyxin, ChromID ESBL, and SuperFOS selective plates. Antimicrobial susceptibility testing was performed using disk diffusion and broth microdilution techniques. Phenotypic confirmation of resistance traits was done using various rapid diagnostic tests. PCR screening was performed for ESBLs, carbapenemases, mcr, and fosA genes. Molecular typing and clonality evaluation were also performed.

Results

Isolates (Escherichia coli, n = 17 and Enterobacter cloacae, n = 1) showing acquired multidrug resistance phenotype were identified in 13 animals, accounting for 25% of the total cases. Production of ESBLs was the most prevalent resistance mechanism, with the corresponding producers predominantly carrying the blaCTX-M-15 gene (92.3%), whereas the blaSHV-12 gene was identified in a single isolate. The blaNDM-5 carbapenemase gene was identified in three E. coli isolates, those latter sharing the same sequence type (ST361). A single colistin-resistant E. coli was isolated and carried both mcr-1 and blaCTX-M-15, whereas a fosfomycin-resistant E. coli isolate coproduced fosA5 and SHV-12. Notably, 69.2% of resistant bacteria were isolated from sick pets compared with 30.7% in healthy ones. E. coli isolates showed various sequence types, with ESBL-producing strains belonging to seven different STs and NDM-5 enzyme producers belonging to ST361.

Conclusions

This study highlights significant antimicrobial resistance in companion animals and the potential risk for zoonotic transmission.
目的:本研究调查了埃及尼罗河三角洲地区坦塔省健康和患病猫狗中广谱ß-内酰胺酶(ESBL)产生菌、碳青霉烯酶产生菌、耐多粘菌素和耐磷霉素肠杆菌的传播风险。方法:采集健康和患病宠物标本206份。使用mSuperCarba、SuperPolymyxin、ChromID ESBL和SuperFOS选择板筛选样品的不同耐药机制。药敏试验采用纸片扩散法和微量肉汤稀释法。利用各种快速诊断试验对抗性性状进行表型确认。PCR筛选ESBLs、碳青霉烯酶、mcr和fosA基因。并进行分子分型和克隆性评价。结果:在13只动物中检出获得性耐多药(MDR)表型的分离株(大肠杆菌17株,阴沟肠杆菌1株),占总病例的25%。ESBLs的产生是最普遍的耐药机制,相应的生产者主要携带blaCTX-M-15基因(92.3%),而blaSHV-12基因在单个分离物中被鉴定出来。blaNDM-5碳青霉烯酶基因在三个大肠杆菌分离株中被鉴定出来,后者具有相同的序列型(ST361)。分离出一株耐粘菌素的大肠杆菌,同时携带mcr-1和blaCTX-M-15,而一株耐磷菌素的大肠杆菌分离株同时产生fosA5和SHV-12。值得注意的是,69.2%的耐药细菌是从生病的宠物身上分离出来的,而在健康的宠物身上,这一比例为30.7%。大肠杆菌分离株表现出不同的序列类型,产esbl的菌株属于7个不同的STs, NDM-5酶的菌株属于ST361。结论:本研究突出了伴侣动物明显的抗微生物药物耐药性和人畜共患传播的潜在风险。
{"title":"Occurrence of ESBL and carbapenemase producers and polymyxin- and fosfomycin-resistant Enterobacterales among pets in a veterinary clinic, Egypt","authors":"Atef Oreiby ,&nbsp;Samanta Freire ,&nbsp;Alaaeldin Mohamed Saad ,&nbsp;Mohamed A. Donia ,&nbsp;Hazim O. Khalifa ,&nbsp;Patrice Nordmann ,&nbsp;Laurent Poirel ,&nbsp;Mustafa Sadek","doi":"10.1016/j.jgar.2026.01.006","DOIUrl":"10.1016/j.jgar.2026.01.006","url":null,"abstract":"<div><h3>Objectives</h3><div>This study investigates the transmission risk of ESBL producers, carbapenemase producers, polymyxin-resistant, and fosfomycin-resistant Enterobacterales from healthy and sick dogs and cats in Tanta governorate, Nile Delta region, Egypt.</div></div><div><h3>Methods</h3><div>A total of 206 different samples were collected from healthy and sick pets. Samples were screened for different resistance mechanisms using mSuperCarba, SuperPolymyxin, ChromID ESBL, and SuperFOS selective plates. Antimicrobial susceptibility testing was performed using disk diffusion and broth microdilution techniques. Phenotypic confirmation of resistance traits was done using various rapid diagnostic tests. PCR screening was performed for ESBLs, carbapenemases, <em>mcr</em>, and <em>fosA</em> genes. Molecular typing and clonality evaluation were also performed.</div></div><div><h3>Results</h3><div>Isolates (<em>Escherichia coli</em>, n = 17 and <em>Enterobacter cloacae</em>, n = 1) showing acquired multidrug resistance phenotype were identified in 13 animals, accounting for 25% of the total cases. Production of ESBLs was the most prevalent resistance mechanism, with the corresponding producers predominantly carrying the <em>bla</em><sub>CTX-M-15</sub> gene (92.3%), whereas the <em>bla</em><sub>SHV-12</sub> gene was identified in a single isolate. The <em>bla</em><sub>NDM-5</sub> carbapenemase gene was identified in three <em>E. coli</em> isolates, those latter sharing the same sequence type (ST361). A single colistin-resistant <em>E. coli</em> was isolated and carried both <em>mcr-1</em> and <em>bla</em><sub>CTX-M-15</sub>, whereas a fosfomycin-resistant <em>E. coli</em> isolate coproduced <em>fosA5</em> and SHV-12. Notably, 69.2% of resistant bacteria were isolated from sick pets compared with 30.7% in healthy ones. <em>E. coli</em> isolates showed various sequence types, with ESBL-producing strains belonging to seven different STs and NDM-5 enzyme producers belonging to ST361.</div></div><div><h3>Conclusions</h3><div>This study highlights significant antimicrobial resistance in companion animals and the potential risk for zoonotic transmission.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"47 ","pages":"Pages 49-54"},"PeriodicalIF":3.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146018513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic analysis of a penicillin-susceptible, methicillin-resistant Staphylococcus aureus (ST9332) harboring triple mecA substitutions 一个青霉素敏感,耐甲氧西林金黄色葡萄球菌(ST9332)的基因组分析,包含三个mecA取代。
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-01-20 DOI: 10.1016/j.jgar.2026.01.004
Qin Tang , Yuting Sun , Fei Yan , Lu Lin , Huarong Yu , Jinxing Chen

Research Background

mecA-positive MRSA is generally assumed to be broadly non-susceptible to β-lactams. Reports of penicillin-susceptible MRSA (PS-MRSA) challenge this view. We describe CDSYY2023, a cefoxitin-resistant yet penicillin-susceptible MRSA carrying three mecA substitutions (S225R, K239E, E246G) and a novel sequence type, ST9332.

Methods

The strain was recovered from the sputum of a hospitalised older adult with dementia and identified as S. aureus by MALDI-TOF MS (Autobio MS1000). Susceptibility testing followed CLSI procedures on VITEK 2 with parallel Mueller–Hinton edge tests (cefoxitin, penicillin). Key readouts were verified by Etest and independently confirmed at a referral laboratory. Whole-genome sequencing (Illumina HiSeq 2500) was assembled de novo with SOAPdenovo2. Functional annotation used COG/GO/KEGG; resistance and virulence genes were queried against CARD and VFDB. MLST was assigned and registered via PUBMLST.

Results

The draft genome is ∼2 750 950 bp (GC 32.94%), with no plasmids, encoding 2521 CDSs, 55 tRNAs and 19 rRNAs. MLST designated ST9332. Phenotypically, VITEK 2 and MH edge tests agreed on cefoxitin resistance (17 mm), while penicillin remained susceptible (25 mm; Etest MIC 0.032 µg/mL), contrary to expectations for a mecA-positive background. Genomics revealed the triple mecA substitutions noted above and no definitive evidence of blaZ. The resistome/virulome included multiple efflux and regulatory elements.

Conclusions

CDSYY2023 is a PS-MRSA with triple-substituted mecA on a novel MLST background (ST9332). Its penicillin-susceptible/cefoxitin-resistant profile likely reflects a specific mecA sequence/regulatory context, highlighting the limits of relying solely on cefoxitin-based screening to infer β-lactam behaviour.
研究背景:meca阳性MRSA通常被认为对β-内酰胺不敏感。青霉素敏感MRSA (PS-MRSA)的报道挑战了这一观点。我们描述了CDSYY2023,这是一种对头孢西丁耐药但对青霉素敏感的MRSA,携带三个mecA替换(S225R, K239E, E246G)和一种新的序列类型ST9332。方法:从1例住院老年痴呆患者的痰液中分离得到该菌株,经MALDI-TOF MS (Autobio MS1000)鉴定为金黄色葡萄球菌。采用CLSI程序对VITEK 2进行平行Mueller-Hinton边缘试验(头孢西丁、青霉素)的药敏试验。关键读数由Etest验证,并在转诊实验室独立确认。全基因组测序(Illumina HiSeq 2500)用SOAPdenovo2重新组装。功能注释采用COG/GO/KEGG;对CARD和VFDB的抗性和毒力基因进行了查询。MLST通过PUBMLST进行分配和注册。结果:该草图基因组约2,750,950 bp (GC 32.94%),不含质粒,编码2,521个cds, 55个trna和19个rnas。MLST指定为ST9332。表型上,VITEK 2和MH边缘试验一致显示头孢西丁耐药(17 mm),而青霉素仍然敏感(25 mm;测试MIC 0.032µg/mL),与meca阳性背景的预期相反。基因组学揭示了上述三个mecA替换,没有明确的blaZ证据。抵抗组/病毒组包括多种外排和调控元件。结论:CDSYY2023是一种具有新型MLST背景(ST9332)的三取代mecA的PS-MRSA。其青霉素敏感/头孢西丁耐药谱可能反映了特定的mecA序列/调控背景,突出了仅依靠基于头孢西丁的筛选推断β-内酰胺行为的局限性。
{"title":"Genomic analysis of a penicillin-susceptible, methicillin-resistant Staphylococcus aureus (ST9332) harboring triple mecA substitutions","authors":"Qin Tang ,&nbsp;Yuting Sun ,&nbsp;Fei Yan ,&nbsp;Lu Lin ,&nbsp;Huarong Yu ,&nbsp;Jinxing Chen","doi":"10.1016/j.jgar.2026.01.004","DOIUrl":"10.1016/j.jgar.2026.01.004","url":null,"abstract":"<div><h3>Research Background</h3><div><em>mecA</em>-positive MRSA is generally assumed to be broadly non-susceptible to β-lactams. Reports of penicillin-susceptible MRSA (PS-MRSA) challenge this view. We describe CDSYY2023, a cefoxitin-resistant yet penicillin-susceptible MRSA carrying three <em>mecA</em> substitutions (S225R, K239E, E246G) and a novel sequence type, ST9332.</div></div><div><h3>Methods</h3><div>The strain was recovered from the sputum of a hospitalised older adult with dementia and identified as <em>S. aureus</em> by MALDI-TOF MS (Autobio MS1000). Susceptibility testing followed CLSI procedures on VITEK 2 with parallel Mueller–Hinton edge tests (cefoxitin, penicillin). Key readouts were verified by Etest and independently confirmed at a referral laboratory. Whole-genome sequencing (Illumina HiSeq 2500) was assembled de novo with SOAPdenovo2. Functional annotation used COG/GO/KEGG; resistance and virulence genes were queried against CARD and VFDB. MLST was assigned and registered via PUBMLST.</div></div><div><h3>Results</h3><div>The draft genome is ∼2 750 950 bp (GC 32.94%), with no plasmids, encoding 2521 CDSs, 55 tRNAs and 19 rRNAs. MLST designated ST9332. Phenotypically, VITEK 2 and MH edge tests agreed on cefoxitin resistance (17 mm), while penicillin remained susceptible (25 mm; Etest MIC 0.032 µg/mL), contrary to expectations for a <em>mecA</em>-positive background. Genomics revealed the triple <em>mecA</em> substitutions noted above and no definitive evidence of <em>blaZ</em>. The resistome/virulome included multiple efflux and regulatory elements.</div></div><div><h3>Conclusions</h3><div>CDSYY2023 is a PS-MRSA with triple-substituted <em>mecA</em> on a novel MLST background (ST9332). Its penicillin-susceptible/cefoxitin-resistant profile likely reflects a specific <em>mecA</em> sequence/regulatory context, highlighting the limits of relying solely on cefoxitin-based screening to infer β-lactam behaviour.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"47 ","pages":"Pages 20-26"},"PeriodicalIF":3.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146029678","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial susceptibility analysis of diarrhoeagenic Escherichia coli isolated from outpatients in Beijing, from 2021 to 2024 2021 - 2024年北京市门诊致泻性大肠杆菌药敏分析
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-01-21 DOI: 10.1016/j.jgar.2026.01.007
Bing Lv, Xin Zhang, Hui Xu, Changying Lin, Ying Huang, Mei Qu, Daitao Zhang, Quanyi Wang

Objectives

This study aimed to investigate the prevalence of diarrhoeagenic Escherichia coli (DEC) among outpatients in Beijing, and to analyse the antimicrobial susceptibility profiles and antimicrobial resistance gene characteristics of the isolated strains.

Methods

From 2021 to 2024, DEC strains were collected from outpatient specimens. After isolation and identification, the minimum inhibitory concentration (MIC) method was used to assess their susceptibility to 16 antibiotics. Whole-genome sequencing was conducted for further analysis.

Results

Among the 1209 DEC strains, the highest resistance rates were observed for ampicillin (63.28%) and tetracycline (45.57%). In contrast, significantly lower rates were found for tigecycline (0.41%), amikacin (0.66%), meropenem (3.97%), ertapenem (6.70%), ceftazidime (7.20%), and ciprofloxacin (9.26%). The 0–5 age group demonstrated higher resistance rates to most antibiotics compared with other age groups. Multi-locus sequence typing revealed significant genetic diversity among all strains, with the predominant sequence types identified as ST10 (5.96%), ST1491 (5.21%), ST4 (4.22%), and ST48 (3.47%). Among 111 fluoroquinolone-resistant strains, chromosomal mutations in gyrA and parC genes were predominant (56.76%). Among 612 cephalosporin-resistant isolates, the blaCTX−M gene was the most prevalent resistance gene (30.72%).

Conclusions

DEC infections and the spread of resistance genes pose a significant health threat, especially in children. Consequently, there is an urgent need to enhance the surveillance and research of resistance genes and to promote the rational use of antibiotics.
目的:调查北京市门诊致泻性大肠杆菌(DEC)的流行情况,分析分离菌株的药敏特征和耐药基因特征。方法:于2021 ~ 2024年采集门诊标本中DEC菌株。分离鉴定后,采用最低抑菌浓度法(MIC)评价其对16种抗生素的药敏。进行全基因组测序进一步分析。结果:1209株DEC中对氨苄西林(63.28%)和四环素(45.57%)的耐药率最高;替加环素(0.41%)、阿米卡星(0.66%)、美罗培南(3.97%)、厄他培南(6.70%)、头孢他啶(7.20%)、环丙沙星(9.26%)的感染率较低。0-5岁年龄组对大多数抗生素的耐药率高于其他年龄组。多位点序列分型显示各菌株间遗传多样性显著,优势序列类型为ST10(5.96%)、ST1491(5.21%)、ST4(4.22%)和ST48(3.47%)。111株氟喹诺酮耐药菌株中,以gyrA和parC基因染色体突变为主(56.76%)。在612株头孢菌素耐药菌株中,以blaCTX-M基因最为常见(30.72%)。结论:DEC感染和耐药基因的传播对健康构成重大威胁,特别是在儿童中。因此,迫切需要加强耐药基因的监测和研究,促进抗生素的合理使用。
{"title":"Antimicrobial susceptibility analysis of diarrhoeagenic Escherichia coli isolated from outpatients in Beijing, from 2021 to 2024","authors":"Bing Lv,&nbsp;Xin Zhang,&nbsp;Hui Xu,&nbsp;Changying Lin,&nbsp;Ying Huang,&nbsp;Mei Qu,&nbsp;Daitao Zhang,&nbsp;Quanyi Wang","doi":"10.1016/j.jgar.2026.01.007","DOIUrl":"10.1016/j.jgar.2026.01.007","url":null,"abstract":"<div><h3>Objectives</h3><div>This study aimed to investigate the prevalence of diarrhoeagenic <em>Escherichia coli</em> (DEC) among outpatients in Beijing, and to analyse the antimicrobial susceptibility profiles and antimicrobial resistance gene characteristics of the isolated strains.</div></div><div><h3>Methods</h3><div>From 2021 to 2024, DEC strains were collected from outpatient specimens. After isolation and identification, the minimum inhibitory concentration (MIC) method was used to assess their susceptibility to 16 antibiotics. Whole-genome sequencing was conducted for further analysis.</div></div><div><h3>Results</h3><div>Among the 1209 DEC strains, the highest resistance rates were observed for ampicillin (63.28%) and tetracycline (45.57%). In contrast, significantly lower rates were found for tigecycline (0.41%), amikacin (0.66%), meropenem (3.97%), ertapenem (6.70%), ceftazidime (7.20%), and ciprofloxacin (9.26%). The 0–5 age group demonstrated higher resistance rates to most antibiotics compared with other age groups. Multi-locus sequence typing revealed significant genetic diversity among all strains, with the predominant sequence types identified as ST10 (5.96%), ST1491 (5.21%), ST4 (4.22%), and ST48 (3.47%). Among 111 fluoroquinolone-resistant strains, chromosomal mutations in <em>gyrA</em> and <em>parC</em> genes were predominant (56.76%). Among 612 cephalosporin-resistant isolates, the <em>bla</em><sub>CTX−M</sub> gene was the most prevalent resistance gene (30.72%).</div></div><div><h3>Conclusions</h3><div>DEC infections and the spread of resistance genes pose a significant health threat, especially in children. Consequently, there is an urgent need to enhance the surveillance and research of resistance genes and to promote the rational use of antibiotics.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"47 ","pages":"Pages 1-8"},"PeriodicalIF":3.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146040836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic epidemiology of extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Mwanza, Tanzania 坦桑尼亚姆万扎产广谱β -内酰胺酶大肠杆菌和肺炎克雷伯菌的基因组流行病学
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-01-27 DOI: 10.1016/j.jgar.2026.01.010
Vitus Silago , Benson R. Kidenya , Katarina Oravcova , Louise Matthews , Conjester I. Mtemisika , Stephen E. Mshana , Heike Claus , Jeremiah Seni

Background

Extended-spectrum beta-lactamase-producing Escherichia coli (ESBL-EC) and Klebsiella pneumoniae (ESBL-KP) represent major clinical threats globally. Genomic epidemiological data remain scarce in low- and middle-income countries, limiting a comprehensive understanding of antimicrobial-resistant pathogen diversity and clonal distribution. The present study investigated the genomic epidemiology of ESBL-EC and ESBL-KP isolates in Mwanza, Tanzania.

Methods

This cross-sectional hospital-based study employed whole-genome sequencing to characterise ESBL-EC (n = 39) and ESBL-KP (n = 49) isolated from patients with bloodstream, urinary tract, and wound infections at a zonal referral hospital between June 2019–June 2020 and March–August 2023.

Results

Thirteen sequence types (STs) were identified among ESBL-EC, predominantly ST131 (30.7%) and ST648 (28.2%). ESBL-KP comprised 15 STs, with ST2390 (24.5%) and ST17 (18.4%) being the most common. The blaCTX−M-15 gene was detected in 87.2% of ESBL-EC and 95.9% of ESBL-KP. IncFII was the dominant plasmid replicon in ESBL-EC (63.9%) and ESBL-KP (83.7%), while repB was detected exclusively in ESBL-KP (28.6%), particularly among ST2390. ESBL-EC showed significantly higher resistance to ciprofloxacin (P < 0.01), whereas ESBL-KP demonstrated higher resistance to gentamicin and piperacillin-tazobactam (both P < 0.01). The cgMLST-based Neighbour-Joining phylogenetic analysis revealed substantial genetic diversity and identified clonal clusters involving the high-risk clone ESBL-EC ST131. Clusters of ESBL-EC ST131 and ST648 were observed across medical and neonatology wards, while ESBL-KP ST2390 clusters were mainly confined to neonatology wards.

Conclusion

This study highlights clonal clusters, the first report of ESBL-KP ST2390, and the predominance of the virulent high-risk clone ESBL-EC ST131 in Mwanza, Tanzania. Underscoring the critical need for reinforced infection control strategies and genomic surveillance.
背景:广谱β -内酰胺酶产生大肠杆菌(ESBL-EC)和肺炎克雷伯菌(ESBL-KP)是全球主要的临床威胁。在低收入和中等收入国家,基因组流行病学数据仍然匮乏,限制了对耐药病原体多样性和克隆分布的全面了解。本研究调查了坦桑尼亚姆万扎地区ESBL-EC和ESBL-KP分离株的基因组流行病学。方法:这项以医院为基础的横断面研究采用全基因组测序来表征2019年6月至2020年6月至2023年3月至8月期间从一家地区转诊医院的血液、尿路和伤口感染患者中分离出的ESBL-EC (n=39)和ESBL-KP (n=49)。结果:ESBL-EC共鉴定出13种序列类型(STs),以ST131(30.7%)和ST648(28.2%)为主。ESBL-KP包括15个STs,其中ST2390(24.5%)和ST17(18.4%)最为常见。在87.2%的ESBL-EC和95.9%的ESBL-KP中检测到blaCTX-M-15基因。在ESBL-EC(63.9%)和ESBL-KP(83.7%)中,IncFII是主要的质粒复制子,而在ESBL-KP中仅检测到repB(28.6%),特别是在ST2390中。结论:本研究突出了ESBL-EC克隆聚集性,首次报道了ESBL-KP ST2390,以及在坦桑尼亚Mwanza的毒性高风险克隆ESBL-EC ST131的优势。强调加强感染控制战略和基因组监测的迫切需要。
{"title":"Genomic epidemiology of extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Mwanza, Tanzania","authors":"Vitus Silago ,&nbsp;Benson R. Kidenya ,&nbsp;Katarina Oravcova ,&nbsp;Louise Matthews ,&nbsp;Conjester I. Mtemisika ,&nbsp;Stephen E. Mshana ,&nbsp;Heike Claus ,&nbsp;Jeremiah Seni","doi":"10.1016/j.jgar.2026.01.010","DOIUrl":"10.1016/j.jgar.2026.01.010","url":null,"abstract":"<div><h3>Background</h3><div>Extended-spectrum beta-lactamase-producing <em>Escherichia coli</em> (ESBL-EC) and <em>Klebsiella pneumoniae</em> (ESBL-KP) represent major clinical threats globally. Genomic epidemiological data remain scarce in low- and middle-income countries, limiting a comprehensive understanding of antimicrobial-resistant pathogen diversity and clonal distribution. The present study investigated the genomic epidemiology of ESBL-EC and ESBL-KP isolates in Mwanza, Tanzania.</div></div><div><h3>Methods</h3><div>This cross-sectional hospital-based study employed whole-genome sequencing to characterise ESBL-EC (<em>n</em> = 39) and ESBL-KP (<em>n</em> = 49) isolated from patients with bloodstream, urinary tract, and wound infections at a zonal referral hospital between June 2019–June 2020 and March–August 2023.</div></div><div><h3>Results</h3><div>Thirteen sequence types (STs) were identified among ESBL-EC, predominantly ST131 (30.7%) and ST648 (28.2%). ESBL-KP comprised 15 STs, with ST2390 (24.5%) and ST17 (18.4%) being the most common. The <em>bla</em><sub>CTX−M-15</sub> gene was detected in 87.2% of ESBL-EC and 95.9% of ESBL-KP. IncFII was the dominant plasmid replicon in ESBL-EC (63.9%) and ESBL-KP (83.7%), while repB was detected exclusively in ESBL-KP (28.6%), particularly among ST2390. ESBL-EC showed significantly higher resistance to ciprofloxacin (<em>P</em> &lt; 0.01), whereas ESBL-KP demonstrated higher resistance to gentamicin and piperacillin-tazobactam (both <em>P</em> &lt; 0.01). The cgMLST-based Neighbour-Joining phylogenetic analysis revealed substantial genetic diversity and identified clonal clusters involving the high-risk clone ESBL-EC ST131. Clusters of ESBL-EC ST131 and ST648 were observed across medical and neonatology wards, while ESBL-KP ST2390 clusters were mainly confined to neonatology wards.</div></div><div><h3>Conclusion</h3><div>This study highlights clonal clusters, the first report of ESBL-KP ST2390, and the predominance of the virulent high-risk clone ESBL-EC ST131 in Mwanza, Tanzania. Underscoring the critical need for reinforced infection control strategies and genomic surveillance.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"47 ","pages":"Pages 55-63"},"PeriodicalIF":3.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146086035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical efficacy of trimethoprim-sulfamethoxazole treatment for pediatric pertussis in macrolide-resistant endemic regions: A retrospective cohort study 甲氧苄啶-磺胺甲恶唑治疗大环内酯耐药流行区儿童百日咳的临床疗效:回顾性队列研究。
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-02-01 DOI: 10.1016/j.jgar.2026.01.011
Juan Yuan , Yarong Yang , Yi Zhang , Jun Wang , Bin Xue , Fangzhi He , Wenjuan Zhao , Shuyue Tang , Zengguo Wang , Xinxin Zhu

Objective

To assess the efficacy and influencing factors of sulfamethoxazole–trimethoprim (SXT) in children with pertussis in regions with a high prevalence of macrolide-resistant Bordetella pertussis (MRBP).

Methods

A total of 317 PCR-confirmed pediatric pertussis cases treated with SXT were retrospectively analyzed. Patients were categorized into short-term (5–7 days, n = 93) and long-term (10–14 days, n = 65) treatment groups. Clinical outcomes, adverse events, and potential predictors of treatment response were analyzed.

Results

The median interval from symptom onset to SXT initiation was 12 days (IQR: 9–15). Following SXT therapy, 243 patients (76.7%) achieved clinical remission, 68 (21.4%) showed partial improvement, and 6 (1.9%) experienced no relief, without clinical deterioration. Multivariate analysis identified nucleic acid negative conversion as a independent predictor of clinical remission (OR, 5.14, 95% CI: 2.66–9.88, p < 0.001). Compared to the short-course group, the long-course group demonstrated significantly higher rates of both clinical remission (83.1% vs. 66.7%, p = 0.022) and nucleic acid clearance (87.7% vs. 71.0%, p = 0.013). No serious adverse events were reported. Skin lesions were the most frequent adverse events (5.1%), with no significant difference between groups (3.2% vs. 7.7%, p = 0.373).

Conclusions

SXT effectively alleviates clinical symptoms of pertussis in children in high MRBP prevalence regions. Nucleic acid negative conversion predicts clinical remission. An extended SXT course (10–14 days) demonstrates superior efficacy to a shorter course (5–7 days). No serious adverse events were observed; skin lesions were the most common side effect.
目的:评价磺胺甲恶唑-甲氧苄啶(SXT)在大环内酯耐药百日咳(MRBP)高发地区儿童百日咳的疗效及影响因素。方法:回顾性分析317例经pcr证实的小儿百日咳经sst治疗的病例。将患者分为短期治疗组(5 ~ 7天,n=93)和长期治疗组(10 ~ 14天,n=65)。分析临床结果、不良事件和治疗反应的潜在预测因素。结果:从症状出现到SXT开始的中位时间间隔为12天(IQR 9-15)。经SXT治疗后,243例(76.7%)患者临床缓解,68例(21.4%)患者部分改善,6例(1.9%)患者无缓解,无临床恶化。多变量分析发现核酸阴性转化是临床缓解的独立预测因子(OR 5.14, 95% CI 2.66-9.88, p < 0.001)。与短疗程组相比,长疗程组的临床缓解率(83.1%比66.7%,p=0.022)和核酸清除率(87.7%比71.0%,p=0.013)均显著高于短疗程组。无严重不良事件报告。皮肤损害是最常见的不良事件(5.1%),组间差异无统计学意义(3.2% vs. 7.7%, p = 0.373)。结论:SXT可有效缓解MRBP高发地区儿童百日咳的临床症状。核酸阴性转化预测临床缓解。延长SXT疗程(10-14天)比缩短疗程(5-7天)更有效。未观察到严重不良事件;皮肤损伤是最常见的副作用。
{"title":"Clinical efficacy of trimethoprim-sulfamethoxazole treatment for pediatric pertussis in macrolide-resistant endemic regions: A retrospective cohort study","authors":"Juan Yuan ,&nbsp;Yarong Yang ,&nbsp;Yi Zhang ,&nbsp;Jun Wang ,&nbsp;Bin Xue ,&nbsp;Fangzhi He ,&nbsp;Wenjuan Zhao ,&nbsp;Shuyue Tang ,&nbsp;Zengguo Wang ,&nbsp;Xinxin Zhu","doi":"10.1016/j.jgar.2026.01.011","DOIUrl":"10.1016/j.jgar.2026.01.011","url":null,"abstract":"<div><h3>Objective</h3><div>To assess the efficacy and influencing factors of sulfamethoxazole–trimethoprim (SXT) in children with pertussis in regions with a high prevalence of macrolide-resistant <em>Bordetella pertussis</em> (MRBP).</div></div><div><h3>Methods</h3><div>A total of 317 PCR-confirmed pediatric pertussis cases treated with SXT were retrospectively analyzed. Patients were categorized into short-term (5–7 days, <em>n</em> = 93) and long-term (10–14 days, <em>n</em> = 65) treatment groups. Clinical outcomes, adverse events, and potential predictors of treatment response were analyzed.</div></div><div><h3>Results</h3><div>The median interval from symptom onset to SXT initiation was 12 days (IQR: 9–15). Following SXT therapy, 243 patients (76.7%) achieved clinical remission, 68 (21.4%) showed partial improvement, and 6 (1.9%) experienced no relief, without clinical deterioration. Multivariate analysis identified nucleic acid negative conversion as a independent predictor of clinical remission (OR, 5.14, 95% CI: 2.66–9.88, <em>p</em> &lt; 0.001). Compared to the short-course group, the long-course group demonstrated significantly higher rates of both clinical remission (83.1% vs. 66.7%, <em>p</em> = 0.022) and nucleic acid clearance (87.7% vs. 71.0%, <em>p</em> = 0.013). No serious adverse events were reported. Skin lesions were the most frequent adverse events (5.1%), with no significant difference between groups (3.2% vs. 7.7%, <em>p</em> = 0.373).</div></div><div><h3>Conclusions</h3><div>SXT effectively alleviates clinical symptoms of pertussis in children in high MRBP prevalence regions. Nucleic acid negative conversion predicts clinical remission. An extended SXT course (10–14 days) demonstrates superior efficacy to a shorter course (5–7 days). No serious adverse events were observed; skin lesions were the most common side effect.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"47 ","pages":"Pages 33-37"},"PeriodicalIF":3.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146105845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High-risk Pseudomonas aeruginosa clones ST308, ST773, and ST233 associated with carbapenem-resistant and extensively drug-resistant isolates from hospital and community settings in Casablanca, Morocco 摩洛哥卡萨布兰卡医院和社区环境中与碳青霉烯耐药和广泛耐药(XDR)分离株相关的高风险铜绿假单胞菌ST308、ST773和ST233克隆
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-01-05 DOI: 10.1016/j.jgar.2025.12.012
Ihssane Benzaarate , Fatima El Otmani , Aboubakr Khazaz , Francois Lebreton , Sylvain Brisse , Kaotar Nayme

Objectives

The spread of high-risk extensively drug-resistant (XDR) Pseudomonas aeruginosa (Pa) clones is a global threat to public health. In Morocco, data on circulating clones and genomic features of Pa isolates are lacking. Accordingly, this study performed whole-genome sequencing (Illumina NextSeq500) of 18 Pa isolates from hospitals (n = 10) and the community (n = 8) to identify their sequence type (ST) affiliation, antimicrobial resistance determinants, virulence factors, and phylogenetic relationships.

Methods

Isolates were selected based on alarming resistance profiles from strains collected in Casablanca, Morocco, between January and December 2021.

Results

These isolates were assigned sequence type 773 (n = 11), 308 (n = 5), and 233 (n = 1), in addition to a novel ST4902 for one hospital isolate. Carbapenem resistance in hospital isolates was primarily attributed to acquired carbapenemases (NDM-1 in ST773 and ST308 clones). In contrast, resistance in one hospital (CSPa93) and one community isolate (cSPa43) was associated with mutations in the outer membrane protein. Fluoroquinolone resistance correlated with the carriage of qnrVC1 and crpP genes, along with mutations in the quinolone resistance-determining regions. The isolates also carried diverse aminoglycoside modifying enzymes and 16S rRNA methyltransferase genes. Genomic analysis also identified multiple virulence genes in these isolates, notably exoU in ST308 and ST773 isolates. Phylogenetic analysis further revealed hospital-adapted strains being genetically related to each other and to community strains.

Conclusion

This first genomic investigation of circulating XDR Pa clones in both hospital and community settings in Morocco using whole-genome sequencing highlights the urgent need for enhanced surveillance and targeted strategies to contain the spread of XDR high-risk clones.
背景:高风险XDR铜绿假单胞菌(Pa)克隆的传播是对全球公共卫生的威胁。在摩洛哥,缺乏关于循环克隆和疟原虫分离株基因组特征的数据。目的、材料和方法:因此,本研究对来自医院(n=10)和社区(n=8)的18株Pa分离株进行了全基因组测序(Illumina NextSeq500),以确定它们的序列类型(ST)隶属关系、抗微生物药物耐药性决定因素、毒力因子和系统发育关系。根据从2021年1月至12月在摩洛哥卡萨布兰卡收集的菌株中惊人的耐药性概况选择分离株。结果:这些分离株被分配为序列型(ST) 773 (n=11), 308 (n=5)和233 (n=1),此外还有一个医院分离株的新序列型ST4902。医院分离株碳青霉烯耐药主要归因于获得性碳青霉烯酶(ST773和ST308克隆中的NDM-1)。相比之下,一家医院(CSPa93)和一家社区分离株(cSPa43)的耐药性与外膜蛋白突变有关。氟喹诺酮类药物耐药与qnrVC1和crpP基因的携带以及喹诺酮类药物耐药决定区(QRDR)的突变相关。这些分离物还携带多种氨基糖苷修饰酶和16S rRNAmethyltransferase基因。基因组分析还在这些分离株中发现了多个毒力基因,特别是ST308和ST773分离株中的exoU。系统发育分析进一步揭示了医院适应菌株彼此之间以及与社区菌株之间存在遗传相关性。结论:利用WGS对摩洛哥医院和社区环境中流行的XDR Pa克隆进行的首次基因组调查突出了迫切需要加强监测和有针对性的战略,以遏制XDR高风险克隆的传播。
{"title":"High-risk Pseudomonas aeruginosa clones ST308, ST773, and ST233 associated with carbapenem-resistant and extensively drug-resistant isolates from hospital and community settings in Casablanca, Morocco","authors":"Ihssane Benzaarate ,&nbsp;Fatima El Otmani ,&nbsp;Aboubakr Khazaz ,&nbsp;Francois Lebreton ,&nbsp;Sylvain Brisse ,&nbsp;Kaotar Nayme","doi":"10.1016/j.jgar.2025.12.012","DOIUrl":"10.1016/j.jgar.2025.12.012","url":null,"abstract":"<div><h3>Objectives</h3><div>The spread of high-risk extensively drug-resistant (XDR) <em>Pseudomonas aeruginosa</em> (Pa) clones is a global threat to public health. In Morocco, data on circulating clones and genomic features of Pa isolates are lacking. Accordingly, this study performed whole-genome sequencing (Illumina NextSeq500) of 18 Pa isolates from hospitals (n = 10) and the community (n = 8) to identify their sequence type (ST) affiliation, antimicrobial resistance determinants, virulence factors, and phylogenetic relationships.</div></div><div><h3>Methods</h3><div>Isolates were selected based on alarming resistance profiles from strains collected in Casablanca, Morocco, between January and December 2021.</div></div><div><h3>Results</h3><div>These isolates were assigned sequence type 773 (n = 11), 308 (n = 5), and 233 (n = 1), in addition to a novel ST4902 for one hospital isolate. Carbapenem resistance in hospital isolates was primarily attributed to acquired carbapenemases (NDM-1 in ST773 and ST308 clones). In contrast, resistance in one hospital (CSPa93) and one community isolate (cSPa43) was associated with mutations in the outer membrane protein. Fluoroquinolone resistance correlated with the carriage of <em>qnrVC1</em> and <em>crpP</em> genes, along with mutations in the quinolone resistance-determining regions. The isolates also carried diverse aminoglycoside modifying enzymes and 16S rRNA methyltransferase genes. Genomic analysis also identified multiple virulence genes in these isolates, notably <em>exoU</em> in ST308 and ST773 isolates. Phylogenetic analysis further revealed hospital-adapted strains being genetically related to each other and to community strains.</div></div><div><h3>Conclusion</h3><div>This first genomic investigation of circulating XDR Pa clones in both hospital and community settings in Morocco using whole-genome sequencing highlights the urgent need for enhanced surveillance and targeted strategies to contain the spread of XDR high-risk clones.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"47 ","pages":"Pages 41-48"},"PeriodicalIF":3.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145917575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pharmacokinetic/pharmacodynamic integration of linezolid alone and in combination with fosfomycin against methicillin-resistant Staphylococcus aureus in a neutropenic murine thigh infection model 在中性粒细胞减少小鼠大腿感染模型中,利奈唑胺单独和联合磷霉素对耐甲氧西林金黄色葡萄球菌的药代动力学/药效学整合
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2026-03-01 Epub Date: 2026-02-09 DOI: 10.1016/j.jgar.2026.01.016
Ziyan Chen , Chunhua Peng , Fangrui Liang , Sailan Wang , Lu Lai , Qin Ai , Zaixing Chen , Shuai Zheng , Yanyan Liu , Xiaohui Huang

Objectives

This study sought to compare the pharmacokinetic-pharmacodynamic (PK/PD) targets of linezolid against methicillin-resistant Staphylococcus aureus (MRSA) in monotherapy versus combination with fosfomycin.

Methods

We assessed the antibacterial effect of linezolid plus fosfomycin, followed by determination of the mutant prevention concentrations (MPCs) under both individual and combined regimens. Next, using a neutropenic murine thigh infection model, we determined the pharmacokinetics of linezolid and evaluated its efficacy following administration as monotherapy or in combination with fosfomycin. PK/PD analysis was subsequently conducted using an Emax model. Finally, we compared the %fT>MPC (the percentage of the dosing interval during which free drug concentrations exceeded the MPC) of linezolid between its monotherapy and combination therapy with fosfomycin.

Results

Combination therapy enhanced bactericidal activity against MRSA and reduced the MPCs of the agents, thereby narrowing the mutant selection window (MSW). Addition of fosfomycin significantly improved linezolid efficacy in the MRSA thigh infection model. For linezolid, the fAUC/MIC values required for stasis, 1-log10 kill, and 2-log10 kill were 18.01, 47.87, and 225.07, respectively. When administered together, fosfomycin reduced the required fAUC/MIC of linezolid by 1.4–6.4-fold. At equivalent linezolid doses, combination therapy increased linezolid %fT>MPC by 1.7–4.8-fold.

Conclusions

Combined linezolid and fosfomycin therapy enhances in vivo anti-MRSA efficacy, reduces the risk of resistance emergence, and lowers the exposure requirements for linezolid.
目的:本研究旨在比较利奈唑胺单药与联合磷霉素治疗耐甲氧西林金黄色葡萄球菌(MRSA)的药代动力学-药效学(PK/PD)靶点。方法:我们评估利奈唑胺加磷霉素的抗菌效果,然后测定单独和联合两种方案下的突变预防浓度(MPCs)。接下来,使用中性粒细胞减少的小鼠大腿感染模型,我们确定了利奈唑胺的药代动力学,并评估了其单独治疗或与磷霉素联合使用的疗效。随后使用Emax模型进行PK/PD分析。最后,我们比较了利奈唑胺在单独治疗和与磷霉素联合治疗期间的%fT>MPC(游离药物浓度超过MPC的给药间隔的百分比)。结果:联合治疗增强了对MRSA的杀菌活性,降低了药物的MPCs,从而缩小了突变选择窗口(MSW)。磷霉素的加入显著提高了利奈唑胺在MRSA大腿感染模型中的疗效。对于linezolid,静止、1-log10杀伤和2-log10杀伤所需的fac /MIC值分别为18.01、47.87和225.07。当同时给药时,磷霉素使利奈唑胺所需的fac /MIC降低了1.4-6.4倍。在相同的利奈唑胺剂量下,联合治疗使利奈唑胺%fT>MPC增加1.7-4.8倍。结论:利奈唑胺与磷霉素联合治疗可提高体内抗mrsa效果,降低耐药发生风险,降低利奈唑胺的暴露要求。
{"title":"Pharmacokinetic/pharmacodynamic integration of linezolid alone and in combination with fosfomycin against methicillin-resistant Staphylococcus aureus in a neutropenic murine thigh infection model","authors":"Ziyan Chen ,&nbsp;Chunhua Peng ,&nbsp;Fangrui Liang ,&nbsp;Sailan Wang ,&nbsp;Lu Lai ,&nbsp;Qin Ai ,&nbsp;Zaixing Chen ,&nbsp;Shuai Zheng ,&nbsp;Yanyan Liu ,&nbsp;Xiaohui Huang","doi":"10.1016/j.jgar.2026.01.016","DOIUrl":"10.1016/j.jgar.2026.01.016","url":null,"abstract":"<div><h3>Objectives</h3><div>This study sought to compare the pharmacokinetic-pharmacodynamic (PK/PD) targets of linezolid against methicillin-resistant <em>Staphylococcus aureus</em> (MRSA) in monotherapy versus combination with fosfomycin.</div></div><div><h3>Methods</h3><div>We assessed the antibacterial effect of linezolid plus fosfomycin, followed by determination of the mutant prevention concentrations (MPCs) under both individual and combined regimens. Next, using a neutropenic murine thigh infection model, we determined the pharmacokinetics of linezolid and evaluated its efficacy following administration as monotherapy or in combination with fosfomycin. PK/PD analysis was subsequently conducted using an <em>E</em><sub>max</sub> model. Finally, we compared the %<em>f</em>T&gt;MPC (the percentage of the dosing interval during which free drug concentrations exceeded the MPC) of linezolid between its monotherapy and combination therapy with fosfomycin.</div></div><div><h3>Results</h3><div>Combination therapy enhanced bactericidal activity against MRSA and reduced the MPCs of the agents, thereby narrowing the mutant selection window (MSW). Addition of fosfomycin significantly improved linezolid efficacy in the MRSA thigh infection model. For linezolid, the <em>f</em>AUC/MIC values required for stasis, 1-log<sub>10</sub> kill, and 2-log<sub>10</sub> kill were 18.01, 47.87, and 225.07, respectively. When administered together, fosfomycin reduced the required <em>f</em>AUC/MIC of linezolid by 1.4–6.4-fold. At equivalent linezolid doses, combination therapy increased linezolid %<em>f</em>T&gt;MPC by 1.7–4.8-fold.</div></div><div><h3>Conclusions</h3><div>Combined linezolid and fosfomycin therapy enhances in vivo anti-MRSA efficacy, reduces the risk of resistance emergence, and lowers the exposure requirements for linezolid.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"47 ","pages":"Pages 64-72"},"PeriodicalIF":3.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146165708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of global antimicrobial resistance
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