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Hybrid sequencing of chromosome and plasmids from multidrug-resistant Escherichia coli isolated in Cambodia: Are megaplasmids vectors of antibiotic resistance genes? 柬埔寨多重耐药大肠杆菌的染色体和质粒杂交测序:巨质粒是抗生素耐药基因的载体吗?
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-17 DOI: 10.1016/j.jgar.2025.09.003
Ella Marcy , Sivhour Chiek , Mallorie Hidé , Savatey Hak , Chiva Ma , Meymey Lem , Gauthier Delvallez , Anne-Laure Bañuls , Sokleaph Cheng , Juliette Hayer

Objectives

The prevalence of antimicrobial resistance (AMR) in Escherichia coli infections in Cambodia is high and increasing, yet data distinguishing plasmid- and chromosome-mediated AMR spread remain limited. The aim of this study was to characterize chromosomal and plasmid structures in clinically relevant E. coli resistant strains to investigate mechanisms driving the spread of antibiotic resistance genes (ARGs) in Battambang Province, Cambodia.

Methods

Hybrid genome assembly was performed using short- and long-read sequencing of six extended–spectrum beta-lactamase (ESBL)- and carbapenemase–producing (CP) E. coli isolates collected from patients at Battambang Provincial Hospital, Cambodia. Detailed bacteriological analyses were conducted, as well as comprehensive genomic investigations to characterize sequence types (STs), plasmids, resistance mechanisms, and phylogenetic relationships among the strains and to perform pairwise comparisons of plasmid sequences.

Results

Chromosome and plasmid sequences were successfully recovered for each strain. Five STs were identified: ST1193 (two strains), ST131, ST205, ST405, and ST4204. All strains displayed a megaplasmid carrying ARGs, and one to five regular-sized plasmids without ARGs. Four distinct megasplasmid sequences were identified, including one shared by two ST1193 strains and one shared by ST131 and ST205 strains.

Conclusions

The identification of megaplasmids carrying ARGs and shared by different strains highlights their potential role in the spread of antimicrobial resistance through horizontal gene transfer in Cambodia. This study also confirms the circulation of the high-risk multidrug-resistant (MDR) clones ST131 and ST1193 in Battambang province, Cambodia, and underscores the importance of hybrid genome assembly to study plasmid structure and identify their role in AMR spread.
目的:柬埔寨大肠杆菌感染中抗菌素耐药性(AMR)的流行率很高,而且还在增加,但区分质粒和染色体介导的AMR传播的数据仍然有限。本研究的目的是表征临床相关大肠杆菌耐药菌株的染色体和质粒结构,以研究柬埔寨马德望省驱动抗生素耐药基因(ARGs)传播的机制。方法:对从柬埔寨马德望省医院患者身上收集的6株产β -内酰胺酶(ESBL)和产碳青霉烯酶(CP)大肠杆菌进行短读和长读测序,进行杂交基因组组装。进行了详细的细菌学分析,以及全面的基因组调查,以表征序列类型(STs),质粒,抗性机制和菌株之间的系统发育关系,并对质粒序列进行两两比较。结果:各菌株的染色体和质粒序列均成功恢复。共鉴定出5株STs: ST1193(2株)、ST131、ST205、ST405和ST4204。所有菌株均显示一个携带ARGs的巨型质粒,以及1 - 5个不携带ARGs的常规大小质粒。鉴定出4个不同的大质粒序列,其中1个为2株ST1193共有,1个为ST131和ST205共有。结论:携带ARGs并由不同菌株共享的巨质粒的鉴定突出了它们在柬埔寨通过水平基因转移(HGT)传播抗菌素耐药性中的潜在作用。本研究还证实了高风险多药耐药(MDR)克隆ST131和ST1193在柬埔寨马德望省的传播,并强调了杂交基因组组装对研究质粒结构和确定其在AMR传播中的作用的重要性。
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引用次数: 0
Monitoring of antimicrobial resistance in hospital, municipal, and treated wastewater in Mbarara, Uganda 监测乌干达姆巴拉拉医院、城市和处理过的废水中的抗菌素耐药性。
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-16 DOI: 10.1016/j.jgar.2025.09.002
Claudia Stange , Rogers Kalyetsi , Judith Owokuhaisa , Moses Ntaro , Arthur Leon , Paul R. Hunter , Andreas Tiehm , Edgar M. Mulogo

Objective

The aim of this study was to estimate the prevalence of antimicrobial resistance in the population of Mbarara through analysis of wastewater and determine the effectiveness of wastewater treatment in reducing discharge of antibiotic-resistant bacteria and antibiotic resistance genes into the environment.

Methods

Hospital, municipal, and treated wastewater (collected on 10 different dates) from Mbarara, Uganda, were analysed for extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli using a culture-based method and selected clinically relevant antibiotic resistance genes using quantitative PCR.

Results

The finding of this study demonstrated that 30.6% of the total E. coli were ESBL producers, constituting a high proportion compared to studies in other countries. Furthermore, the investigation revealed the widespread distribution of the carbapenemase gene blaCMY-2 within the population. The comparative study of the inflow and outflow of the waste stabilisation pond system, which is used for wastewater treatment, demonstrated a log reduction of 1.9–2.4 for coliform bacteria and total as well as ESBL-producing E. coli. Conversely, the wastewater treatment was associated with an increase of the antibiotic resistance genes sul1 and tetC.

Conclusions

The study shows that the waste stabilisation pond system is releasing significant amounts of coliform bacteria, E. coli, ESBL-producing E. coli, somatic bacteriophages, and antibiotic resistance genes into the Rwizi River. We also demonstrated that wastewater-based surveillance is a cost-effective method of obtaining information on the prevalence of AMR in the population, especially in countries where clinical surveillance is limited due to a lack of resources and infrastructure.
目的:本研究的目的是通过对废水的分析来估计Mbarara人群中抗菌素耐药性的流行情况,并确定废水处理在减少抗生素耐药细菌和抗生素耐药基因排放到环境中的有效性。方法:采用基于培养的方法对乌干达姆巴拉拉的医院、市政和处理过的废水(收集于10个不同日期)进行分析,以检测产生广谱β -内酰胺酶(ESBL)的大肠杆菌,并使用定量PCR选择临床相关的抗生素耐药基因。结果:本研究结果表明,30.6%的大肠杆菌是ESBL生产者,与其他国家的研究相比,这一比例很高。此外,调查还揭示了碳青霉烯酶基因blaCMY-2在人群中的广泛分布。对用于废水处理的废物稳定池系统的流入和流出的对比研究表明,大肠菌群和总大肠杆菌以及产生esbl的大肠杆菌的对数降低了1.9至2.4。相反,废水处理与抗生素抗性基因sul1和tetC的增加有关。结论:研究表明,废物稳定池系统向瑞茨河释放了大量大肠菌群、大肠杆菌、产esble大肠杆菌、体细胞噬菌体和抗生素耐药基因。我们还证明,基于废水的监测是一种具有成本效益的方法,可以获得有关人群中抗菌素耐药性流行情况的信息,特别是在由于缺乏资源和基础设施而临床监测有限的国家。
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引用次数: 0
In vitro evaluation of Ibrexafungerp against clinical and environmental isolates of cryptococcus neoformans and cryptococcus gattii Ibrexafungerp体外抗新型隐球菌和加蒂隐球菌临床和环境分离株的评价。
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-11 DOI: 10.1016/j.jgar.2025.09.001
Andrés Ceballos-Garzon, Carolina Firacative
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引用次数: 0
Co-existence of mcr-1 and blaCTX−M from porcine-derived Escherichia coli isolated in China and selection of mcr-1 under cephalosporins pressure 猪源性大肠杆菌mcr-1与blaCTX-M的共存及头孢菌素压力下mcr-1的选择
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-04 DOI: 10.1016/j.jgar.2025.08.018
Zixian Wang , Lin Zheng , Lingwei Zhu , Jingyi Guo , Gejin Lu , Jie Jing , Shiwen Sun , Yang Sun , Xue Ji , Bowen Jiang , Bing Liang , Chuanfang Zhao , Xuejun Guo

Objectives

The usage of cephalosporins (CEFs) and the co-existence of the extended-spectrum β-lactamase gene blaCTX−M in the same host may promote the prevalence of the colistin (CST) resistance gene mcr-1. This study aims to investigate the underlying mechanisms of how the mcr-1 and blaCTX−M demonstrate significant co-occurrence in Escherichia coli (E. coli).

Methods

Conjugation assays were performed on 22 porcine-derived mcr-1-positive and blaCTX−M-positive E. coli (MCRPEC::blaCTX−M+) isolates from China to assess co-transfer potential. Whole-genome sequencing characterized the genetic localization and context of mcr-1 and blaCTX−M. Fitness cost and genetic stability were evaluated through the growth curve and antimicrobial resistance (AMR) gene stability rates measurements. Additionally, we examined mcr-1 selection during blaCTX−M co-existence under CEFs’ pressure by monitoring fitness and stability variations in mcr-1.

Results

Successful co-transfer of mcr-1 and blaCTX−M occurred in 36% (8/22) of isolates, demonstrating co-transfer efficiency ranging from 1.3 × 10–5 to 1.5 × 10–3. Predominant plasmid combinations facilitating co-transfer were the IncI2(mcr-1) + IncI1(blaCTX−M) combination. Notably, we report the first identification of blaCTX−M-positive E. coli (CTX-M-EC) carrying dual mcr-1 copies on plasmids. The mcr-1 and blaCTX−M did not exhibit fitness costs in 63% (5/8) of transconjugants, with 88% (7/8) maintaining over 70% stable rate in 10 d. CEFs’ pressure enhanced both the fitness and stability of mcr-1 in blaCTX−M co-harbouring transconjugants.

Conclusions

The observed high co-transfer efficiency, high stability rates, and low fitness costs of mcr-1 and blaCTX−M across distinct plasmid types and the mcr-1 selection driven by CEFs support the co-existence of mcr-1 and blaCTX−M in E. coli hosts. Our findings support the suggestion that there is an urgent need for coordinated antibiotic stewardship targeting both drug classes to curb multidrug-resistant (MDR) bacteria spread.
目的:头孢菌素(CEFs)的使用和广谱β-内酰胺酶(ESBL)基因blaCTX-M在同一宿主体内共存可能促进粘菌素(CST)耐药基因mcr-1的流行。本研究旨在探讨mcr-1和blaCTX-M在大肠杆菌中显著共存的潜在机制。方法:对22株猪源性mcr-1阳性和blaCTX-M阳性大肠杆菌(MCRPEC::blaCTX-M+)进行偶联试验,评估共转移潜力。全基因组测序鉴定了mcr-1和blaCTX-M的遗传定位和背景。通过生长曲线和抗菌素耐药性(AMR)基因稳定率的测定来评价适应度成本和遗传稳定性。此外,我们通过监测mcr-1的适应性和稳定性变化,研究了CEFs压力下blaCTX-M共存期间mcr-1的选择。结果:mcr-1与blaCTX-M共转移成功率为36%(8/22),共转移效率为1.3×10-5 ~ 1.5×10-3。促进共转移的主要质粒组合是IncI2(mcr-1) + IncI1(blaCTX-M)组合。值得注意的是,我们报告了首次鉴定的blactx - m阳性大肠杆菌(CTX-M-EC)在质粒上携带双mcr-1拷贝。63%(5/8)的转共轭体mcr-1和blaCTX-M不表现出适应成本,88%(7/8)的转共轭体在10天内保持70%以上的稳定率。CEFs压力增强了blaCTX-M共载转共轭子中mcr-1的适应性和稳定性。结论:观察到mcr-1和blaCTX-M在不同质粒类型间的高共转移效率、高稳定性和低适应成本,以及CEFs驱动的mcr-1选择支持mcr-1和blaCTX-M在大肠杆菌宿主中共存。我们的研究结果支持了一项建议,即迫切需要针对这两种药物进行协调的抗生素管理,以遏制多重耐药细菌的传播。
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引用次数: 0
Dispensing of antibiotics without prescription in community drug retail outlets of Bahir Dar City in Northwest Ethiopia: A simulated client visit before and after educational intervention 埃塞俄比亚西北部巴希尔达尔市社区药品零售网点无处方分发抗生素:模拟客户访问前后的教育干预。
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-04 DOI: 10.1016/j.jgar.2025.08.017
Masho Tigabe Tekle , Faisel Dula Sema , Minichil Chanie Worku , Abdisa Gemedi Jara , Worku Endalamaw Ayenew

Objectives

The non-prescription supply of antibiotics in community drug retail outlets (CDROs) significantly contributes to antibiotic resistance (ABR). This study aimed to assess the effectiveness of an educational intervention for pharmacy practitioners (PPs) in reducing over-the-counter (OTC) antibiotic sales.

Methods

From 1 August 2022, to 30 January 2023, a total of 80 simulated client (SC) visits (40 pre-intervention, 40:post-intervention) were made in 40 CDROs of Bahir Dar City, to determine the baseline and post-intervention extent of the OTC sale of antibiotics. Verbally a 30-minute one-time onsite education regarding antimicrobials, antibiotics, ABR, rational use of antibiotics, role of community PPs in ensuring rational use of antibiotics, and good antibiotic dispensing practice as an intervention was provided to 70 PPs who were working in the 40 CDROs. The education was guided by written informational material which was delivered to each PPs. Two months after the intervention, its effectiveness was tested using McNemar χ2 test, and a P value <0.05 was considered statistically significant.

Results

The intervention resulted in significant improvements in reducing non-prescription sale of antibiotics in CDROs (55 % pre-intervention vs. 20 % post-intervention), increasing the request for prescription paper (35 % vs. 75 %), insisting that antibiotics must be dispensed with prescription paper (33.3 % vs. 68.7 %), and reducing dispensing of antibiotics at level 1 demand (50 % vs. 25 %).

Conclusions

Educational intervention provided to PPs was effective in reducing the non-prescription sale of antibiotics, and it improved the practice of dispensing antibiotics.
目的:社区药品零售网点(CDROs)非处方抗生素供应对抗生素耐药(ABR)有显著影响。本研究旨在评估教育干预对药房从业人员(PPs)减少非处方(OTC)抗生素销售的有效性。方法:于2022年8月1日至2023年1月30日,对巴希尔达尔市40家cdro进行80次模拟客户(SC)访诊(干预前40次,干预后40次),确定抗生素OTC销售基线及干预后程度。对在40个CDROs工作的70名pp进行了30分钟的现场口头教育,内容包括抗菌剂、抗生素、ABR、抗生素合理使用、社区pp在确保抗生素合理使用中的作用以及良好的抗生素配药规范(GADP)作为干预措施。教育工作由一份书面信息材料指导,该材料已分发给每个pp。干预2个月后,采用McNemar卡方检验进行有效性检验,p值< 0.05为差异有统计学意义。结果:干预显著改善;减少cdro中抗生素的非处方销售(干预前55% Vs干预后20%),增加处方纸的需求(35% Vs 75%),坚持抗生素必须配处方纸分发(33.3% Vs 68.7%),并减少一级需求抗生素的分发(50% Vs 25%)。结论:对PPs进行教育干预可有效减少非处方销售抗菌药物,提高抗菌药物调剂工作质量。
{"title":"Dispensing of antibiotics without prescription in community drug retail outlets of Bahir Dar City in Northwest Ethiopia: A simulated client visit before and after educational intervention","authors":"Masho Tigabe Tekle ,&nbsp;Faisel Dula Sema ,&nbsp;Minichil Chanie Worku ,&nbsp;Abdisa Gemedi Jara ,&nbsp;Worku Endalamaw Ayenew","doi":"10.1016/j.jgar.2025.08.017","DOIUrl":"10.1016/j.jgar.2025.08.017","url":null,"abstract":"<div><h3>Objectives</h3><div>The non-prescription supply of antibiotics in community drug retail outlets (CDROs) significantly contributes to antibiotic resistance (ABR). This study aimed to assess the effectiveness of an educational intervention for pharmacy practitioners (PPs) in reducing over-the-counter (OTC) antibiotic sales.</div></div><div><h3>Methods</h3><div>From 1 August 2022, to 30 January 2023, a total of 80 simulated client (SC) visits (40 pre-intervention, 40:post-intervention) were made in 40 CDROs of Bahir Dar City, to determine the baseline and post-intervention extent of the OTC sale of antibiotics. Verbally a 30-minute one-time onsite education regarding antimicrobials, antibiotics, ABR, rational use of antibiotics, role of community PPs in ensuring rational use of antibiotics, and good antibiotic dispensing practice as an intervention was provided to 70 PPs who were working in the 40 CDROs. The education was guided by written informational material which was delivered to each PPs. Two months after the intervention, its effectiveness was tested using McNemar χ<sup>2</sup> test, and a <em>P</em> value &lt;0.05 was considered statistically significant.</div></div><div><h3>Results</h3><div>The intervention resulted in significant improvements in reducing non-prescription sale of antibiotics in CDROs (55 % pre-intervention vs. 20 % post-intervention), increasing the request for prescription paper (35 % vs. 75 %), insisting that antibiotics must be dispensed with prescription paper (33.3 % vs. 68.7 %), and reducing dispensing of antibiotics at level 1 demand (50 % vs. 25 %).</div></div><div><h3>Conclusions</h3><div>Educational intervention provided to PPs was effective in reducing the non-prescription sale of antibiotics, and it improved the practice of dispensing antibiotics.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"45 ","pages":"Pages 138-146"},"PeriodicalIF":3.2,"publicationDate":"2025-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145008324","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A systematic review and meta-analysis of the risk of mortality associated with methicillin-resistant Staphylococcus aureus clones 耐甲氧西林金黄色葡萄球菌克隆相关死亡风险的系统回顾和荟萃分析
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-02 DOI: 10.1016/j.jgar.2025.08.015
Anastasia A. Asantewaa, Samuel N.-A. Yartey, Eric S. Donkor

Objectives

This systematic review and meta-analysis aimed to quantify mortality associated with MRSA clones and evaluate the contribution of specific molecular features to outcome variation.

Methods

Databases including PubMed, Scopus, Web of Science, and Google Scholar were searched for studies reporting mortality among patients with MRSA infection and associated molecular typing data, including clonal complex, sequence type and SCCmec type. Results were presented in thematic narratives, tables and figures. A random-effects meta-analysis was performed to estimate pooled mortality and prevalence proportions.

Results

Twenty-seven included studies reported on MRSA isolates from 12 different countries. The overall pooled mortality was 22.47% (95% CI: 17.31–28.07), with the highest mortality observed in Europe. Among MRSA clonal complexes, the highest mortality was observed among CC5 (50.75%), followed by CC8 (37.56%). Although ST72 (66.16%) was the most prevalent sequence type, the highest mortality rates were observed in ST764 (38.74%) and ST1 (38.72%). SCCmec type IV (36.95%) was dominant but had a lower mortality rate (18.71%) compared to types II (39.09%) and III (27.52%).

Conclusions

The clear dominance and lethality of specific lineages affirm the clinical utility of molecular diagnostics in guiding treatment and predicting outcomes. These insights call for an expansion of MRSA typing programs in hospital laboratories and national surveillance systems.
背景:耐甲氧西林金黄色葡萄球菌(MRSA)是最普遍的病原体之一,每年造成的死亡人数超过一些主要传染病。其临床意义不仅在于其耐药谱的不断扩大,还在于其克隆结构的不断演变。在这篇系统综述和荟萃分析中,我们旨在量化与MRSA克隆相关的死亡率,并评估特定分子特征对结果变化的贡献。方法:我们检索PubMed、Scopus、Web of Science和谷歌Scholar,检索MRSA感染患者死亡率的相关研究和相关分子分型数据,包括克隆复合体、序列型和SCCmec型。结果以专题叙述、表格和数字的形式提出。进行随机效应荟萃分析以估计合并死亡率和患病率比例。结果:27项纳入的研究报告了来自12个不同国家的MRSA分离株。总合并死亡率为22.47% (95% CI: 17.31-28.07),其中欧洲的死亡率最高。MRSA克隆复合体中,CC5致死率最高(50.75%),其次是CC8(37.56%)。虽然ST72(66.16%)是最常见的序列型,但ST764(38.74%)和ST1(38.72%)的死亡率最高。SCCmec IV型占36.95%,但死亡率(18.71%)低于II型(39.09%)和III型(27.52%)。结论:分子诊断在指导治疗和预测预后方面具有明确的优势和致死率。这些见解要求在医院实验室和国家监测系统中扩大MRSA分型项目。
{"title":"A systematic review and meta-analysis of the risk of mortality associated with methicillin-resistant Staphylococcus aureus clones","authors":"Anastasia A. Asantewaa,&nbsp;Samuel N.-A. Yartey,&nbsp;Eric S. Donkor","doi":"10.1016/j.jgar.2025.08.015","DOIUrl":"10.1016/j.jgar.2025.08.015","url":null,"abstract":"<div><h3>Objectives</h3><div>This systematic review and meta-analysis aimed to quantify mortality associated with MRSA clones and evaluate the contribution of specific molecular features to outcome variation.</div></div><div><h3>Methods</h3><div>Databases including PubMed, Scopus, Web of Science, and Google Scholar were searched for studies reporting mortality among patients with MRSA infection and associated molecular typing data, including clonal complex, sequence type and SCCmec type. Results were presented in thematic narratives, tables and figures. A random-effects meta-analysis was performed to estimate pooled mortality and prevalence proportions.</div></div><div><h3>Results</h3><div>Twenty-seven included studies reported on MRSA isolates from 12 different countries. The overall pooled mortality was 22.47% (95% CI: 17.31–28.07), with the highest mortality observed in Europe. Among MRSA clonal complexes, the highest mortality was observed among CC5 (50.75%), followed by CC8 (37.56%). Although ST72 (66.16%) was the most prevalent sequence type, the highest mortality rates were observed in ST764 (38.74%) and ST1 (38.72%). SCCmec type IV (36.95%) was dominant but had a lower mortality rate (18.71%) compared to types II (39.09%) and III (27.52%).</div></div><div><h3>Conclusions</h3><div>The clear dominance and lethality of specific lineages affirm the clinical utility of molecular diagnostics in guiding treatment and predicting outcomes. These insights call for an expansion of MRSA typing programs in hospital laboratories and national surveillance systems.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"45 ","pages":"Pages 86-99"},"PeriodicalIF":3.2,"publicationDate":"2025-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145000723","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Erratum to Antimicrobial resistance in Campylobacter spp. focussing on C. jejuni and C. coli – A Narrative Review’ Journal of Global Antimicrobial Resistance Volume 43 (2025) Pages 372-389 对弯曲杆菌的抗菌素耐药性的勘误,集中在C.空肠和C.大肠杆菌-全球抗菌素耐药性杂志43卷(2025)372-389页
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-01 DOI: 10.1016/j.jgar.2025.08.007
Vathsala Mohan , Nikolaos Strepis , Konstantinos Mitsakakis , Karsten Becker , Leonid Chindelevitch , Nirajmohan Shivaperumal , Khine Swe Swe-Han , John P. Hays
{"title":"Erratum to Antimicrobial resistance in Campylobacter spp. focussing on C. jejuni and C. coli – A Narrative Review’ Journal of Global Antimicrobial Resistance Volume 43 (2025) Pages 372-389","authors":"Vathsala Mohan ,&nbsp;Nikolaos Strepis ,&nbsp;Konstantinos Mitsakakis ,&nbsp;Karsten Becker ,&nbsp;Leonid Chindelevitch ,&nbsp;Nirajmohan Shivaperumal ,&nbsp;Khine Swe Swe-Han ,&nbsp;John P. Hays","doi":"10.1016/j.jgar.2025.08.007","DOIUrl":"10.1016/j.jgar.2025.08.007","url":null,"abstract":"","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"44 ","pages":"Pages 453-454"},"PeriodicalIF":3.2,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145004299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Retrospective analysis of antimicrobial resistance among Escherichia coli causing community-acquired urinary tract infections in the United States from 2010 to 2022 2010-2022年美国引起社区获得性尿路感染的大肠杆菌抗菌素耐药性回顾性分析
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-01 DOI: 10.1016/j.jgar.2025.08.003
Stephen James Ryan Arends , Erin K. McCreary , Matthew Helgeson , Gina Morgan , Shilpa Patkar , Rodrigo Mendes

Objective

A retrospective analysis of Escherichia coli isolates collected from community-acquired urinary tract infections (UTIs) in the United States for the years 2010–2022 was performed. The data originated from accessing the SENTRY Antimicrobial Surveillance Program, which is a global monitoring program that has been ongoing since 1997 with a purpose of tracking and reporting susceptibility of clinical isolates collected from various infection sources.

Methods

Isolates meeting the Centers for Disease Control and Prevention definition for community-acquired UTI were tested for antimicrobial susceptibility against 17 antimicrobial agents using broth microdilution methodology specified by the Clinical & Laboratory Standards Institute guidelines. Isolates were interpreted as susceptible, intermediate, or resistant as appropriate using Clinical & Laboratory Standards Institute and European Committee on Antimicrobial Susceptibility Testing breakpoints and characterized for extended-spectrum β-lactamase and multidrug-resistant phenotypes.

Results

The percentage of isolates susceptible to the oral agents amoxicillin-clavulanate, trimethoprim-sulfamethoxazole, and fluoroquinolones was 70%–85% throughout the study period, which crosses the acceptable threshold of 80% for empiric use of trimethoprim-sulfamethoxazole per the 2010 Infectious Disease Society of America guidelines. Higher susceptibility (>90%) was observed for all agents administered via intravenous or intramuscular route. Variation in susceptibility profiles was observed by census region, with the highest resistant rates commonly found in the Middle Atlantic.

Conclusions

These data highlight the need for more oral options when treating community-acquired UTIs.
目的:回顾性分析2010-2022年美国社区获得性尿路感染(uti)收集的大肠杆菌分离株。这些数据来自SENTRY抗菌药物监测计划,这是一个自1997年以来一直在进行的全球监测计划,目的是跟踪和报告从各种感染源收集的临床分离株的敏感性。方法:采用临床与实验室标准协会(CLSI)指南规定的微量肉汤稀释法,对符合美国疾病控制与预防中心对社区获得性尿路感染定义的分离株进行了对17种抗菌药物的敏感性测试。根据CLSI和欧洲抗微生物药物敏感性测试委员会的断点,将分离物解释为敏感、中间或耐药,并以广谱β-内酰胺酶和多重耐药表型为特征。结果:在整个研究期间,对阿莫西林-克拉维酸酯、甲氧苄啶-磺胺甲恶唑和氟喹诺酮类口服药物敏感的分离株百分比为70%-85%,超过了2010年美国传染病学会指南中甲氧苄啶-磺胺甲恶唑经验使用的可接受阈值80%。所有通过静脉或肌肉注射给药的药物都有较高的易感性(bbb90 %)。不同普查区域的易感性分布存在差异,通常在大西洋中部发现最高的耐药率。结论:这些数据强调了在治疗社区获得性尿路感染时需要更多的口服选择。
{"title":"Retrospective analysis of antimicrobial resistance among Escherichia coli causing community-acquired urinary tract infections in the United States from 2010 to 2022","authors":"Stephen James Ryan Arends ,&nbsp;Erin K. McCreary ,&nbsp;Matthew Helgeson ,&nbsp;Gina Morgan ,&nbsp;Shilpa Patkar ,&nbsp;Rodrigo Mendes","doi":"10.1016/j.jgar.2025.08.003","DOIUrl":"10.1016/j.jgar.2025.08.003","url":null,"abstract":"<div><h3>Objective</h3><div>A retrospective analysis of <em>Escherichia coli</em> isolates collected from community-acquired urinary tract infections (UTIs) in the United States for the years 2010–2022 was performed. The data originated from accessing the SENTRY Antimicrobial Surveillance Program, which is a global monitoring program that has been ongoing since 1997 with a purpose of tracking and reporting susceptibility of clinical isolates collected from various infection sources.</div></div><div><h3>Methods</h3><div>Isolates meeting the Centers for Disease Control and Prevention definition for community-acquired UTI were tested for antimicrobial susceptibility against 17 antimicrobial agents using broth microdilution methodology specified by the Clinical &amp; Laboratory Standards Institute guidelines. Isolates were interpreted as susceptible, intermediate, or resistant as appropriate using Clinical &amp; Laboratory Standards Institute and European Committee on Antimicrobial Susceptibility Testing breakpoints and characterized for extended-spectrum <em>β</em>-lactamase and multidrug-resistant phenotypes.</div></div><div><h3>Results</h3><div>The percentage of isolates susceptible to the oral agents amoxicillin-clavulanate, trimethoprim-sulfamethoxazole, and fluoroquinolones was 70%–85% throughout the study period, which crosses the acceptable threshold of 80% for empiric use of trimethoprim-sulfamethoxazole per the 2010 Infectious Disease Society of America guidelines. Higher susceptibility (&gt;90%) was observed for all agents administered via intravenous or intramuscular route. Variation in susceptibility profiles was observed by census region, with the highest resistant rates commonly found in the Middle Atlantic.</div></div><div><h3>Conclusions</h3><div>These data highlight the need for more oral options when treating community-acquired UTIs.</div></div>","PeriodicalId":15936,"journal":{"name":"Journal of global antimicrobial resistance","volume":"44 ","pages":"Pages 442-448"},"PeriodicalIF":3.2,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144835313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Epidemiological insights into global metallo-β-lactamases-producing pseudomonas aeruginosa: A comprehensive analysis based on NCBI database 全球产金属β-内酰胺酶铜绿假单胞菌流行病学研究:基于NCBI数据库的综合分析
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-01 DOI: 10.1016/j.jgar.2025.05.023
Junbin Zhai , Ruyu Yan , Xiaoli Cao , Chang Liu , Fengyan Li , Han Shen , Xuejing Xu
This study aims to analyze the distribution of metallo-β-lactamase (MβLs) encoding genes in global Pseudomonas aeruginosa. Genomes of P. aeruginosa (21,788 in total) were obtained from the NCBI database and annotated using Prodigal to ensure consistency. Blastn analysis was conducted to compare the structured blaMβL databases with annotated genomes to obtain detailed distribution of all blaMβL genes in all genomes. A self-written sequence typing tool was utilized for sequence typing analysis on blaMβL carrying P. aeruginosa, and meta-information of strains was extracted for further analysis. Out of 21,788 genomes, 2,639 (12.1%) contained 4,014 blaMβL, with blaVIM being the most prevalent (51.2%), followed by blaIMP (24.1%) and blaNDM (23.4%). Twenty-four blaVIM variants, with blaVIM-2 being the most common, accounting for 73.2%; There are 39 variants of blaIMP, mainly blaIMP-1 and blaIMP-7, accounting for 16.1% and 14.5%, respectively. Among 2,639 P. aeruginosa carrying blaMβL, 109 distinct sequence types (STs) were identified, with ST235 (16.8%) and ST111 (16.7%) being the predominant types, followed by ST308 (372, 14.1%), ST233 (190, 7.2%), ST357 (144, 5.5%), ST1203 (108, 4.1%), and ST773 (105, 4.0%). Notably, blaMβL-producing P. aeruginosa showed a continuous increase, peaking in 2019 since first detection in 1997. These strains were predominantly isolated from human sources (1,836, 69.6%), primarily from urine samples (21.9%). The predominant metalloenzymes in global P. aeruginosa are blaVIM-2, blaIMP-1, and blaIMP-7, primarily associated with epidemic high-risk clones ST235, ST111, and ST308. Given the rising trend of blaMβL-producing P. aeruginosa, enhanced infection prevention and control measures are warranted.
本研究旨在分析金属β-内酰胺酶(MβLs)编码基因在全球铜绿假单胞菌中的分布。从NCBI数据库中获得铜绿假单胞菌(P. aeruginosa)的基因组(共21,788个),并使用Prodigal进行注释以确保一致性。Blastn分析将结构化的blaMβL数据库与带注释的基因组进行比较,获得所有blaMβL基因在所有基因组中的详细分布。利用自行编写的序列分型工具对携带blaMβL的铜绿假单胞菌进行序列分型分析,并提取菌株元信息进行进一步分析。在21,788个基因组中,2,639个(12.1%)包含4,014个blaMβL,其中blaVIM最多(51.2%),其次是blaIMP(24.1%)和blaNDM(23.4%)。24种blaVIM改型,blaVIM-2是最常见的,占73.2%;blaIMP有39种变异,主要为blaIMP-1和blaIMP-7,分别占16.1%和14.5%。在2639株携带blaMβL的铜绿假单胞菌中,共鉴定出109种不同的序列类型(STs),其中ST235(16.8%)和ST111(16.7%)为优势序列类型,其次是ST308(372, 14.1%)、ST233(190, 7.2%)、ST357(144, 5.5%)、ST1203(108, 4.1%)和ST773(105, 4.0%)。值得注意的是,产生blam β l的铜绿假单胞菌的数量持续增加,自1997年首次检测到以来,在2019年达到峰值。这些菌株主要来自人类来源(1836株,69.6%),主要来自尿液样本(21.9%)。全球铜绿假单胞菌中主要的金属酶为blaVIM-2、blaIMP-1和blaIMP-7,主要与流行高危克隆ST235、ST111和ST308相关。鉴于产blam β l的铜绿假单胞菌呈上升趋势,有必要加强感染预防和控制措施。
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引用次数: 0
A nomogram to predict bloodstream infections caused by third-generation cephalosporin-resistant Enterobacteriaceae. 预测第三代耐头孢菌素肠杆菌科引起的血流感染的Nomogram。
IF 3.2 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-09-01 Epub Date: 2025-07-22 DOI: 10.1016/j.jgar.2025.07.015
Chun-Lin Liu, Rui-Hang Huang, Zhi-Ying Deng, Qing-Nian Wu, Ping Chen, Zhi-Ting Huo, Jie Yao

Objectives: Third-generation cephalosporin resistance (3GCR) in Enterobacteriaceae bloodstream infections (BSIs) challenges clinical management in China. This study aimed to develop a predictive tool to guide antibiotic stewardship.

Methods: A retrospective cohort of 459 patients with Enterobacteriaceae BSIs (185 3GCR, 274 third-generation cephalosporin-sensitive [3GCS]) from a tertiary hospital (2021-2023) was analysed. Multivariate logistic regression with backward selection identified predictors, integrated into a nomogram.

Results: Independent 3GCR predictors included advanced age ( (Odds Ratio (OR) = 1.02, 95% Confidence Interval (CI): 1.01-1.04), liver cirrhosis (OR = 2.18, 1.26-3.77), solid tumours (OR = 2.04, 1.19-3.50), prior third-generation cephalosporin use (OR = 2.44 1.47-4.08), and elevated procalcitonin (OR = 1.01, 1.01-1.02). The nomogram showed moderate discrimination (Area Under Curve (AUC) = 0.751, 95% CI: 0.67-0.83) and good calibration (Hosmer-Lemeshow P = 0.757).

Conclusions: This nomogram, incorporating readily available clinical variables, facilitates rapid 3GCR risk stratification. Its implementation may optimize empirical antibiotic selection, improve outcomes, and mitigate resistance escalation in Enterobacteriaceae BSIs.

背景:肠杆菌科血流感染(bsi)的第三代头孢菌素耐药性(3GCR)对中国的临床管理提出了挑战。本研究旨在开发一种预测工具来指导抗生素的管理。方法:对某三级医院(2021-2023年)459例肠杆菌科bsi患者(185例3GCR, 274例第三代头孢菌素敏感[3GCS])进行回顾性分析。多元逻辑回归与逆向选择确定的预测因素,整合成一个nomogram。结果:3GCR的独立预测因子包括高龄(优势比(OR)=1.02, 95%可信区间(CI):1.01-1.04)、肝硬化(OR=2.18, 1.26-3.77)、实体肿瘤(OR=2.04, 1.19-3.50)、以前使用过第三代头孢菌素(OR=2.44, 1.47-4.08)和降钙素原升高(OR=1.01, 1.01-1.02)。nomogram显示中度判别(Area Under Curve, AUC =0.751, 95%CI:0.67-0.83)和良好的定标(Hosmer-Lemeshow P=0.757)。结论:该nomogram结合了现成的临床变量,促进了3GCR风险的快速分层。它的实施可以优化经验抗生素选择,改善结果,并减轻肠杆菌科bsi的耐药性升级。
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Journal of global antimicrobial resistance
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