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Automated yeast cultivation control using a biosensor and flow cytometry.
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-18 DOI: 10.1093/jimb/kuae039
Raquel Perruca Foncillas, Sara Magnusson, Basel Al-Rudainy, Ola Wallberg, Marie F Gorwa-Grauslund, Magnus Carlquist

Effective microbial bioprocessing relies on maintaining ideal cultivation conditions, highlighting the necessity for tools that monitor and regulate cellular performance and robustness. This study evaluates a fed-batch cultivation control system based on at-line flow cytometry monitoring of intact yeast cells having a fluorescent transcription factor-based redox biosensor. Specifically, the biosensor assesses the response of an industrial xylose-fermenting Saccharomyces cerevisiae strain carrying the TRX2p-yEGFP biosensor for NADPH/NADP+ ratio imbalance when exposed to furfural. The developed control system successfully detected biosensor output and automatically adjusted furfural feed rate, ensuring physiological fitness at high furfural levels. Moreover, the single-cell measurements enabled the monitoring of subpopulation dynamics, enhancing control precision over traditional methods. The presented automated control system highlights the potential of combining biosensors and flow cytometry for robust microbial cultivations by leveraging intracellular properties as control inputs.

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引用次数: 0
Evolution and Screening of Trichoderma reesei Mutants for Secreted Protein Production at Elevated Temperature.
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-18 DOI: 10.1093/jimb/kuae038
Elizabeth Bodie, Zhongqiang Chen, Kirstin Crotty, Cherry Lin, Chuanbin Liu, Sergio Sunux, Michael Ward

The filamentous fungus Trichoderma reesei is a mesophilic ascomycete commercially used to produce industrial enzymes for a variety of applications. Strain improvement efforts over many years have resulted in more productive hosts, but also in undesirable traits such as the need for lower temperatures to achieve maximum protein secretion rates. Lower fermentation temperatures increase the need for cooling resulting in higher manufacturing costs. We used a droplet-based evolution strategy to increase the protein secretion temperature of a highly productive T. reesei whole cellulase strain from 25°C to 28°C by first isolating an improved mutant and subsequently tracing the causative high temperature mutation to one gene designated gef1. An industrial host with a gef1 deletion was found to be capable of improved productivity at higher temperature under industrially relevant fermentation conditions.

丝状真菌毛霉菌(Trichoderma reesei)是一种中嗜热性子囊菌,商业上用于生产各种用途的工业酶。经过多年的菌种改良工作,宿主的产量提高了,但也产生了一些不良性状,例如需要较低的温度才能达到最高的蛋白质分泌率。较低的发酵温度增加了冷却的需要,导致制造成本上升。我们采用基于液滴的进化策略,首先分离出改良突变体,然后追踪高温突变的致病基因gef1,从而将高产T. reesei全纤维素酶菌株的蛋白质分泌温度从25°C提高到28°C。结果发现,在工业相关的发酵条件下,gef1 基因缺失的工业宿主能够在较高温度下提高生产率。
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引用次数: 0
Characterization of pectinase producing Saccharomyces cerevisiae UCDFST 09-448 and its effects on cull peach fermentations.
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-16 DOI: 10.1093/jimb/kuae037
Aaliyah Raquel Gutierrez-Cano, Bryce Jones, Jordan Macario, Sofia Martin, Derrick Cardenas, Hannah Simpson, Kyria Boundy-Mills, Meredith Claire Edwards

Fermentation of pectin-rich biomass by Saccharomyces cerevisiae can produce bioethanol as a fuel replacement to combat carbon dioxide emissions from the combustion of fossil fuels. S.cerevisiae UCDFST 09-448 produces its own pectinase enzymes potentially eliminating the need for commercial pectinases during fermentation. This research assessed growth, pectinase activity, and fermentative activity of S. cerevisiae UCDFST 09-448 and compared its performance to an industrial yeast strain, S. cerevisiae XR122N. S. cerevisiae UCDFST 09-448's growth was inhibited by osmotic stress (xylose concentrations above 1M), ethanol concentrations greater than 5% v/v, and temperatures outside of 30°C-37°C. However, S. cerevisiae UCDFST 09-448 was able to consistently grow in an industrial pH range (3-6). It was able to metabolize glucose, sucrose, and fructose but was unable to metabolize arabinose, xylose, and galacturonic acid. The pectinase enzyme produced by S. cerevisiae UCDFST 09-448 was active under typical fermentation conditions (35°C-37°C, pH 5.0). Regardless of S. cerevisiae UCDFST 09-448's limitations when compared to S. cerevisiae XR122N in 15% w/v peach fermentations, S. cerevisiae UCDFST 09-448 was still able to achieve maximum ethanol yields in the absence of commercial pectinases (44.7 ± 3.1g/L). Under the same conditions S. cerevisiae XR122N produced 39.5 ± 3.1g/L ethanol. While S. cerevisiae UCDFST 09-448 may not currently be optimized for industrial fermentations, it is a step towards a consolidated bioprocessing approach to fermentation of pectin-rich biomass.

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引用次数: 0
Improving the alcohol respiratory chain and energy metabolism by enhancing PQQ synthesis in Acetobacter pasteurianus. 通过提高巴氏醋酸杆菌中 PQQ 的合成,改善酒精呼吸链和能量代谢。
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-28 DOI: 10.1093/jimb/kuae036
Wenqing Zhang, Chen Feng, Chunxue Zhang, Jia Song, Li Li, Menglei Xia, Wei Ding, Yu Zheng, Min Wang

Pyrroquinoline quinone (PQQ) is one of the important coenzymes in living organisms. In acetic acid bacteria (AAB) it plays a crucial role in alcohol respiratory chain, as a coenzyme of alcohol dehydrogenase. In this work, the PQQ biosynthetic genes were overexpressed in Acetobacter pasteurianus CGMCC 3089 to improve the fermentation performance. The result shows that the intracellular and extracellular PQQ contents in the recombinant strain A. pasteurianus (pBBR1-p264-pqq) were 152.53% and 141.08% higher than those of the control A. pasteurianus (pBBR1-p264), respectively. The catalytic activity of alcohol dehydrogenase and aldehyde dehydrogenase increased by 52.92% and 67.04%, respectively. The results indicated that the energy charge and intracellular ATP were also improved in the recombinant strain. The acetic acid fermentation was carried out using a 5 L self-aspirating fermenter, and the acetic acid production rate of the recombinant strain was 23.20% higher compared with the control. Furthermore, the relationship between the PQQ and acetic acid tolerance of cells was analyzed. The biomass of recombinant strain was 180.2%, 44.3%, and 38.6% higher than those of control under 2%, 3%, and 4% acetic acid stress, respectively. After treated with 6% acetic acid for 40 min, the survival rate of the recombinant strain was increased by 76.20% compared with the control. Those result demonstrated that overexpression of PQQ biosynthetic genes increased the content of PQQ, therefore improving the acetic acid fermentation and the cell tolerance against acetic acid by improving the alcohol respiratory chain and energy metabolism.

吡咯喹啉醌(PQQ)是生物体内重要的辅酶之一。在醋酸菌(AAB)中,它作为醇脱氢酶的辅酶,在醇呼吸链中发挥着重要作用。本研究通过在巴氏醋酸杆菌 CGMCC 3089 中过表达 PQQ 生物合成基因来改善发酵性能。结果表明,重组菌株巴氏醋酸杆菌(pBBR1-p264-pqq)的胞内和胞外PQQ含量分别比对照菌株巴氏醋酸杆菌(pBBR1-p264)高152.53%和141.08%。醇脱氢酶和醛脱氢酶的催化活性分别提高了 52.92% 和 67.04%。结果表明,重组菌株的能量电荷和细胞内 ATP 也得到了改善。使用 5 升自吸式发酵罐进行醋酸发酵,重组菌株的醋酸生产率比对照组高 23.20%。此外,还分析了细胞的 PQQ 与醋酸耐受性之间的关系。在 2%、3% 和 4% 的醋酸胁迫下,重组菌株的生物量分别比对照高出 180.2%、44.3% 和 38.6%。用 6% 的醋酸处理 40 分钟后,重组菌株的存活率比对照提高了 76.20%。这些结果表明,过表达 PQQ 生物合成基因可增加 PQQ 的含量,从而通过改善酒精呼吸链和能量代谢来提高醋酸发酵和细胞对醋酸的耐受性。
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引用次数: 0
Development of Modular Expression Across Phylogenetically Distinct Diazotrophs 在系统发育不同的重氮营养体中发展模块化表达
IF 3.4 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-11 DOI: 10.1093/jimb/kuae033
Shawn Kulakowski, Alex Rivier, Rita Kuo, Sonya Mengel, Thomas Eng
Diazotrophic bacteria can reduce atmospheric nitrogen into ammonia enabling bioavailability of the essential element. Many diazotrophs closely associate with plant roots increasing nitrogen availability, acting as plant growth promoters. These associations have the potential to reduce the need for costly synthetic fertilizers if they could be engineered for agricultural applications. However, despite the importance of diazotrophic bacteria, genetic tools are poorly developed in a limited number of species, in turn narrowing the crops and root microbiomes that can be targeted. Here we report optimized protocols and plasmids to manipulate phylogenetically diverse diazotrophs with the goal of enabling synthetic biology and genetic engineering. Three broad-host-range plasmids can be used across multiple diazotrophs, with the identification of one specific plasmid (containing origin of replication RK2 and a kanamycin resistance marker) showing the highest degree of compatibility across bacteria tested. We then demonstrated modular expression by testing seven promoters and eleven ribosomal binding sites using proxy fluorescent proteins. Finally, we tested four small molecule inducible systems to report expression in three diazotrophs and demonstrated genome editing in Klebsiella michiganensis M5al.
重氮营养细菌能将大气中的氮还原成氨,从而提高生物对氮元素的利用率。许多重氮营养细菌与植物根系紧密结合,增加氮的可用性,起到促进植物生长的作用。如果能将这些联系用于农业,就有可能减少对昂贵的合成肥料的需求。然而,尽管重氮营养细菌非常重要,但在数量有限的物种中,基因工具的开发程度却很低,这反过来又缩小了可针对的作物和根微生物群的范围。在这里,我们报告了用于操纵系统发育多样的重氮营养细菌的优化方案和质粒,目的是实现合成生物学和基因工程。三种具有广泛宿主范围的质粒可用于多种重氮滋养菌,其中一种特定质粒(含有复制起源 RK2 和卡那霉素抗性标记)在测试的细菌中显示出最高程度的兼容性。然后,我们使用代理荧光蛋白测试了七个启动子和十一个核糖体结合位点,证明了模块化表达。最后,我们测试了四种小分子诱导系统,报告了在三种重氮营养菌中的表达情况,并在密歇根克雷伯菌 M5al 中演示了基因组编辑。
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引用次数: 0
Simultaneous enumeration of yeast and bacterial cells in the context of industrial bioprocesses 在工业生物过程中同时枚举酵母和细菌细胞
IF 3.4 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-10 DOI: 10.1093/jimb/kuae029
Carolina Teixeira Martins, Ana Paula Jacobus, Renilson Conceição, Douglas Fernandes Barbin, Helena Bolini, Andreas Karoly Gombert
In scenarios where yeast and bacterial cells coexist, it is of interest to simultaneously quantify the concentrations of both cell types, since traditional methods used to determine these concentrations individually take more time and resources. Here, we compared different methods for quantifying the fuel ethanol Saccharomyces cerevisiae PE-2 yeast strain and cells from the probiotic Lactiplantibacillus plantarum strain in microbial suspensions. Individual suspensions were prepared, mixed in 1:1 or 100:1 yeast-to-bacteria ratios, covering the range typically encountered in sugarcane biorefineries, and analyzed using bright field microscopy, manual and automatic Spread-plate and Drop-plate counting, flow cytometry (at 1:1 and 100:1 ratios), and a Coulter Counter (at 1:1 and 100:1 ratios). We observed that for yeast cell counts in the mixture (1:1 and 100:1 ratios), flow cytometry, the Coulter Counter, and both Spread-plate options (manual and automatic CFU counting) yielded statistically similar results, while the Drop-plate and microscopy-based methods gave statistically different results. For bacterial cell quantification, the microscopy-based method, Drop-plate, and both Spread-plate plating options and flow cytometry (1:1 ratio) produced no significantly different results (p &gt; .05). In contrast, the Coulter Counter (1:1 ratio) and flow cytometry (100:1 ratio) presented results statistically different (p &lt; .05). Additionally, quantifying bacterial cells in a mixed suspension at a 100:1 ratio wasn't possible due to an overlap between yeast cell debris and bacterial cells. We conclude that each method has limitations, advantages, and disadvantages. One-Sentence Summary This study compares methods for simultaneously quantifying yeast and bacterial cells in a mixed sample, highlighting that in different cell proportions, some methods cannot quantify both cell types and present distinct advantages and limitations regarding time, cost, and precision.
在酵母细胞和细菌细胞共存的情况下,同时量化这两种细胞类型的浓度是很有意义的,因为单独测定这些浓度的传统方法需要花费更多的时间和资源。在此,我们比较了不同的方法来量化微生物悬浮液中的燃料乙醇酿酒酵母 PE-2 菌株和益生菌植物乳杆菌菌株的细胞。我们制备了单个悬浮液,以 1:1 或 100:1 的酵母菌与细菌比例混合,涵盖了甘蔗生物炼制过程中通常遇到的比例范围,并使用明视野显微镜、手动和自动展板和滴板计数、流式细胞仪(以 1:1 和 100:1 的比例)以及库尔特计数器(以 1:1 和 100:1 的比例)进行分析。我们观察到,对于混合物中的酵母细胞计数(1:1 和 100:1),流式细胞仪、库尔特计数器和两种展板选项(手动和自动 CFU 计数)得出的结果在统计学上相似,而基于滴板和显微镜的方法得出的结果在统计学上不同。在细菌细胞定量方面,基于显微镜的方法、Drop-plate、Spread-plate Plating 选项和流式细胞仪(1:1 比例)得出的结果无明显差异(p&;gt; .05)。相比之下,库尔特计数器(1:1 比例)和流式细胞仪(100:1 比例)得出的结果有统计学差异(p &p;lt;.05)。此外,由于酵母细胞碎片和细菌细胞之间存在重叠,因此无法以 100:1 的比例量化混合悬浮液中的细菌细胞。我们的结论是,每种方法都有其局限性和优缺点。一句话总结 本研究比较了同时定量混合样品中酵母细胞和细菌细胞的方法,强调了在不同细胞比例下,有些方法无法同时定量两种细胞类型,而且在时间、成本和精度方面存在明显的优势和局限性。
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引用次数: 0
Vegan grade medium component screening and concentration optimization for the fermentation of the probiotic strain Lactobacillus paracasei IMC 502® using Design of Experiments. 利用实验设计法筛选和优化用于益生菌株准乳杆菌 IMC 502® 发酵的素级培养基成分和浓度。
IF 3.4 4区 生物学 Q1 Medicine Pub Date : 2024-04-24 DOI: 10.1093/jimb/kuae016
Darshankumar A. Parecha, A. Alfano, D. Cimini, C. Schiraldi
Lactobacillus paracasei IMC502® is a commercially successful probiotic strain, however, there are no reports that investigate growth medium composition in relation to improved biomass production for this strain. The major outcome of the present study is the design and optimization of a growth medium based on vegan components to be used in the cultivation of Lactobacillus paracasei IMC502®, by using Design of Experiments (DoE). Besides comparing different carbon sources, the use of plant-based peptones as nitrogen sources was considered. In particular, the use of guar peptone as the main nitrogen source, in the optimization of fermentation media for the production of probiotics, could replace other plant peptones (e.g. potato, rice, wheat and soy) which are part of the human diet, thereby avoiding an increase in product and process prices. A model with R2 and adjusted R2 values higher than 95% was obtained. Model accuracy was equal to 94.11%. The vegan-optimized culture medium described in this study increased biomass production by about 65% compared to growth on De Man-Rogosa-Sharpe (MRS) medium. Moreover, this approach showed that most of the salts and trace elements generally present in MRS are not affecting biomass production, thus a simplified medium preparation can be proposed with higher probiotic biomass yield and titer. The possibility to obtain viable lactic acid bacteria at high density from vegetable derived nutrients will be of great interest for specific consumer communities, opening the way to follow this approach with other probiotics of impact for human health.
副干酪乳杆菌 IMC502® 是一种在商业上获得成功的益生菌株,然而,目前还没有任何报告调查了生长培养基成分与提高该菌株生物量生产的关系。本研究的主要成果是通过实验设计(DoE),设计并优化了一种基于素食成分的生长培养基,用于培养副干酪乳杆菌 IMC502®。除了比较不同的碳源外,还考虑了使用植物性蛋白胨作为氮源。特别是,在优化生产益生菌的发酵培养基时,使用瓜尔蛋白胨作为主要氮源,可以替代人类饮食中的其他植物蛋白胨(如马铃薯、大米、小麦和大豆),从而避免产品和工艺价格的上涨。模型的 R2 值和调整 R2 值均高于 95%。模型准确率为 94.11%。与在De Man-Rogosa-Sharpe(MRS)培养基上生长相比,本研究中描述的素食优化培养基提高了约65%的生物量产量。此外,这种方法还表明,MRS 培养基中通常存在的大多数盐分和微量元素都不会影响生物量的产生,因此可以提出一种简化的培养基制备方法,以获得更高的益生菌生物量产量和滴度。从蔬菜营养素中获得高密度乳酸菌的可能性将引起特定消费者群体的极大兴趣,并为后续使用对人类健康有影响的其他益生菌开辟了道路。
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引用次数: 0
Discovery of Streptomyces species CS-62, a novel producer of the Acinetobacter baumannii selective antibiotic factumycin. 发现链霉菌 CS-62 是鲍曼不动杆菌选择性抗生素法鲁霉素的新型生产者。
IF 3.4 4区 生物学 Q1 Medicine Pub Date : 2024-04-17 DOI: 10.1093/jimb/kuae014
Amir Y Alwali, Diane Santos, César Aguilar, Audrey Birch, L. Rodríguez-Orduña, Carson B Roberts, Ramya Modi, C. licona-cassani, Elizabeth I. Parkinson
Narrow spectrum antibiotics are of great interest given their ability to spare the microbiome and decrease widespread antibiotic resistance compared to broad spectrum antibiotics. Herein we screened an in-house library of Actinobacteria strains for selective activity against Acinetobacter baumannii and successfully identified Streptomyces sp. CS-62 as a producer of a natural product with this valuable activity. Analysis of the cultures via high resolution mass spectrometry and tandem mass spectrometry followed by comparison with molecules in the Natural Product Atlas (NP Atlas) and the Global Natural Products Social Molecular Networking (GNPS) platform suggested a novel natural product. Genome mining analysis initially supported the production of a novel kirromycin derivative. Isolation and structure elucidation via mass spectrometry and NMR analyses revealed that the active natural product was the known natural product factumycin, exposing omissions and errors in the consulted databases. While public databases are generally very useful for avoiding rediscovery of known molecules, rediscovery remains a problem due to public databases either being incomplete or having errors that result in failed dereplication. Overall, the work describes the ongoing problem of dereplication and the continued need for public database curation.
与广谱抗生素相比,窄谱抗生素能够保护微生物群,减少广泛的抗生素耐药性,因此备受关注。在此,我们对内部放线菌菌株库进行了筛选,以确定其对鲍曼不动杆菌的选择性活性,并成功鉴定出 CS-62 链霉菌是具有这种宝贵活性的天然产物的生产者。通过高分辨质谱法和串联质谱法对培养物进行分析,然后与天然产品图谱(NP Atlas)和全球天然产品社会分子网络(GNPS)平台中的分子进行比较,发现了一种新型天然产品。基因组挖掘分析初步支持了新型基红霉素衍生物的生产。通过质谱和核磁共振分析进行分离和结构阐释后发现,活性天然产物就是已知的天然产物法鲁霉素,这暴露了所查询数据库中的遗漏和错误。虽然公共数据库通常对避免重新发现已知分子非常有用,但由于公共数据库不完整或存在错误导致无法重复,重新发现仍然是一个问题。总之,这项工作描述了目前存在的取消复制问题以及对公共数据库整理的持续需求。
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引用次数: 0
Unlocking Growth Potential in Halomonas bluephagenesis for Enhanced PHA Production with Sulfate Ions. 利用硫酸根离子释放蓝光单胞菌的生长潜能,提高 PHA 生产。
IF 3.4 4区 生物学 Q1 Medicine Pub Date : 2024-04-17 DOI: 10.1093/jimb/kuae013
Fuwei Yao, Kai Yuan, Weiqiang Zhou, Weitao Tang, Tang Tang, Xiaofan Yang, Haijun Liu, Fangliang Li, Qing Xu, Chao Peng
The mutant strain H. bluephagenesis (TDH4A1B5P) was found to produce PHA under low-salt, non-sterile conditions, but the yield was low. To improve the yield, different nitrogen sources were tested. It was discovered that urea was the most effective nitrogen source for promoting growth during the stable stage, while ammonium sulfate was used during the logarithmic stage. The growth time of H. bluephagenesis (TDH4A1B5P) and its PHA content were significantly prolonged by the presence of sulfate ions. After 64 hours in a 5-liter bioreactor supplemented with sulfate ions, the dry cell weight of H. bluephagenesis weighed 132 g/l and had a PHA content of 82%. To promote the growth and PHA accumulation of H. bluephagenesis (TDH4A1B5P), a feeding regimen supplemented with nitrogen sources and sulfate ions with ammonium sodium sulfate was established in this study. The dry cell weight was 124 g/L, and the PHA content accounted for 82.3% (w/w) of the dry cell weight, resulting in a PHA yield of 101 g/L in a 30-liter bioreactor using the optimized culture strategy. In conclusion, stimulating H. bluephagenesis (TDH4A1B5P) to produce PHA is a feasible and suitable strategy for all H. bluephagenesis.
研究发现,突变株 H. bluephagenesis(TDH4A1B5P)在低盐、无菌条件下也能生产 PHA,但产量较低。为了提高产量,试验了不同的氮源。结果发现,在稳定期,尿素是促进生长最有效的氮源,而在对数期则使用硫酸铵。硫酸根离子的存在显著延长了蓝藻 H. bluephagenesis(TDH4A1B5P)的生长时间及其 PHA 含量。在添加了硫酸根离子的 5 升生物反应器中生长 64 小时后,H. bluephagenesis 的干细胞重量为 132 克/升,PHA 含量为 82%。为了促进 H. bluephagenesis(TDH4A1B5P)的生长和 PHA 的积累,本研究建立了一种补充氮源和硫酸根离子(硫酸铵钠)的喂养方案。干细胞重量为 124 克/升,PHA 含量占干细胞重量的 82.3%(w/w),采用优化培养策略,在 30 升生物反应器中的 PHA 产量为 101 克/升。总之,刺激蓝藻酵母(TDH4A1B5P)生产 PHA 是一种可行且适用于所有蓝藻酵母的策略。
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引用次数: 0
Multi-modular metabolic engineering and efflux engineering for enhanced lycopene production in recombinant Saccharomyces cerevisiae 利用多模块代谢工程和外排工程提高重组酿酒酵母的番茄红素产量
IF 3.4 4区 生物学 Q1 Medicine Pub Date : 2024-04-15 DOI: 10.1093/jimb/kuae015
Guangxi Huang, Jiarong Li, Jingyuan Lin, Changqing Duan, Guoliang Yan
Lycopene has been widely used in the food industry and medical field due to its antioxidant, anti-cancer, and anti-inflammatory properties. However, achieving efficient manufacture of lycopene using chassis cells on an industrial scale remains a major challenge. Herein, we attempted to integrate multiple metabolic engineering strategies to establish an efficient and balanced lycopene biosynthetic system in Saccharomyces cerevisiae. First, the lycopene synthesis pathway was modularized to sequentially enhance the metabolic flux of the Mevalonate pathway, the acetyl-CoA supply module, and lycopene exogenous enzymatic module. The modular operation enabled the efficient conversion of acetyl-CoA to downstream pathway of lycopene synthesis, resulting in a 3.1-fold increase of lycopene yield. Second, we introduced acetate as an exogenous carbon source and utilized an acetate-repressible promoter to replace the natural ERG9 promoter. This approach not only enhanced the supply of acetyl-CoA but also concurrently diminished the flux towards the competitive ergosterol pathway. As a result, a further 42.3% increase in lycopene production was observed. Third, we optimized NADPH supply and mitigated cytotoxicity by overexpressing ABC transporters to promote lycopene efflux. The obtained strain YLY-PDR11 showed a 12.7-fold increase in extracellular lycopene level compared to the control strain. Finally, the total lycopene yield reached 343.7mg/L, which was 4.3 times higher than that of the initial strain YLY-04. Our results demonstrate that combining multi-modular metabolic engineering with efflux engineering is an effective approach to improve the production of lycopene. This strategy can also be applied to the overproduction of other desirable isoprenoid compounds with similar synthesis and storage patterns in S. cerevisiae.
番茄红素因其抗氧化、抗癌和抗炎特性而被广泛应用于食品工业和医学领域。然而,利用底盘细胞实现番茄红素的高效工业化生产仍然是一项重大挑战。在此,我们尝试整合多种代谢工程策略,在酿酒酵母中建立高效、平衡的番茄红素生物合成系统。首先,将番茄红素合成途径模块化,依次提高甲羟戊酸途径、乙酰-CoA供应模块和番茄红素外源酶模块的代谢通量。模块化操作使乙酰-CoA高效地转化到番茄红素合成的下游途径,使番茄红素产量提高了3.1倍。其次,我们引入了醋酸作为外源碳源,并利用醋酸可抑制启动子取代天然的ERG9启动子。这种方法不仅增加了乙酰-CoA 的供应,还同时减少了竞争性麦角甾醇途径的通量。因此,番茄红素的产量进一步增加了 42.3%。第三,我们通过过表达 ABC 转运体来促进番茄红素外流,从而优化 NADPH 的供应并减轻细胞毒性。与对照菌株相比,获得的菌株 YLY-PDR11 细胞外番茄红素含量增加了 12.7 倍。最后,番茄红素总产量达到 343.7 毫克/升,是初始菌株 YLY-04 的 4.3 倍。我们的研究结果表明,将多模块代谢工程与外排工程相结合是提高番茄红素产量的有效方法。这种策略也可用于在酿酒酵母中过度生产其他具有类似合成和储存模式的理想异戊二烯化合物。
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Journal of Industrial Microbiology & Biotechnology
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