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Clinical pharmacist-led implementation of an intravenous-to-oral antimicrobial switch protocol: A prospective Quasi-experimental study. 临床药师主导的静脉到口服抗菌药物切换方案的实施:一项前瞻性准实验研究。
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-06 DOI: 10.1016/j.jiac.2026.102925
Fatma Gul Yumrucu, Emre Kara, Leyla Yumrukaya, Hatice Yagmur Zengin, Selen Yegenoglu, Ahmet Cagkan Inkaya, Gokhan Metan, Omrum Uzun

Objectives: In antimicrobial therapy, early intravenous-to-oral switch (IVOS) is recommended for eligible patients to minimize complications and optimize pharmacoeconomic outcomes. This study aimed to evaluate the impact of a clinical pharmacist-led multimodal intervention strategy on IVOS rates.

Methods: A prospective before-and-after study was conducted between January and June 2024, including observation and intervention periods. Hospitalized adults receiving IV antimicrobials were included. A two-round expert panel was convened prior to data collection to identify the criteria for IVOS. During the observation period, IV antimicrobial utilization patterns were monitored without intervention. The intervention period involved the implementation of a standardized IVOS protocol, targeted education for infectious disease physicians, and switch recommendations for eligible treatments. The primary endpoint was the difference in IVOS rates between study periods among eligible treatments.

Results: Among 962 IV antimicrobial courses evaluated, 213 (22.1%) met the eligibility criteria for IVOS. Among patients who met IVOS eligibility criteria, the proportion undergoing overall IVOS increased from 29.0% in the observation period to 54.0% in the intervention period (p < 0.001). Among 113 IVOS-eligible cases, pharmacists recommended switching in 57 (50.4%), with a 59.6% physician acceptance rate (34/57). No significant differences were observed between periods for: microbiological cure rates, Clostridioides difficile infection incidence, intensive care unit admission rates, antimicrobial reinitiation within 48 h of treatment cessation, 15- and 30-day readmission and mortality rates. Antimicrobial costs decreased significantly from $15,600.30 (all-parenteral baseline) and $14,997.40 (adjusted baseline) to $8333.81 post intervention.

Conclusions: The intervention was associated with a substantial increase in overall IVOS among eligible patients, supporting its effectiveness in promoting timely de-escalation from intravenous therapy. Clinical pharmacist-led initiatives optimize appropriate switching and antimicrobial utilization in stewardship.

目的:在抗菌药物治疗中,建议符合条件的患者早期静脉转口服切换(IVOS),以尽量减少并发症并优化药物经济学结果。本研究旨在评估临床药师主导的多模式干预策略对IVOS发生率的影响。方法:于2024年1 - 6月进行前瞻性前后对照研究,包括观察期和干预期。接受静脉注射抗微生物药物的住院成年人也包括在内。在收集数据之前召开了两轮专家小组会议,以确定ivs的标准。在观察期间,在不干预的情况下监测静脉抗菌药物的使用情况。干预期间包括实施标准化的IVOS方案,对传染病医生进行有针对性的教育,并对符合条件的治疗方法提出建议。主要终点是在符合条件的治疗中,研究期间IVOS率的差异。结果:962个静脉抗菌疗程中,213个疗程(22.1%)符合IVOS标准。在符合IVOS资格标准的患者中,接受总IVOS的比例从观察期的29.0%增加到干预期的54.0% (p结论:干预与符合条件的患者中总IVOS的大幅增加相关,支持其在促进静脉治疗及时降级方面的有效性。临床药师主导的举措优化适当的切换和抗菌药物的使用管理。
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引用次数: 0
Enhanced Guideline-Compliant Antimicrobial Prophylaxis Based on Preoperative Urine Culture Pathogens Reduces Bloodstream Infection and Sepsis Following Ureteroscopic Lithotripsy. 基于术前尿培养病原体的强化符合指南的抗菌预防可减少输尿管镜碎石术后的血流感染和败血症。
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-05 DOI: 10.1016/j.jiac.2026.102924
Katsuhiro Onishi, Hiroshi Morioka, Masashi Yamamoto, Daisuke Tsuchimoto, Mitsuru Nishio, Yoshie Moriya, Toru Kimura

Introduction: Positive preoperative urine culture is a risk factor for infection after ureteroscopic lithotripsy (URSL). However, the effectiveness of tailoring antimicrobial prophylaxis (AP) to pathogens identified in preoperative urine culture remains unclear. This study aimed to evaluate whether three AP strategies reduce bloodstream infections and sepsis following URSL.

Methods: This single-center retrospective observational study was conducted between April 2019 and March 2025 at Komaki City Hospital, Japan. AP was classified into three categories: guideline-compliant AP (GC-AP, which do not cover all detected pathogens), pathogen-directed AP (PD-AP, which cover all pathogens but is non-guideline-compliant), and enhanced GC-AP (GC-AP or AP with an extended spectrum of antibiotics to which all pathogens detected in the preoperative urine culture are susceptible). The incidences of bloodstream infections and sepsis after URSL were compared among the three groups. The risk factors for postoperative sepsis were analyzed using multivariable logistic analysis.

Results: The enhanced GC-AP group had fewer bloodstream infections than the GC-AP group (0.67% [1/149] vs. 8.11% [6/74], p = 0.0059). No bloodstream infections were observed in the PD-AP group. However, the incidence of sepsis was significantly higher in the PD-AP group than in the enhanced GC-AP group (28.6% [8/28] vs. 10.7% [16/149], p = 0.030). Multivariable analysis showed that enhanced GC-AP significantly reduced the incidence of sepsis after URSL (odds ratio: 0.41, 95% confidence interval: 0.18-0.93, p = 0.023).

Conclusions: Enhanced GC-AP reduced bloodstream infections and sepsis after URSL.

导读:术前尿培养阳性是输尿管镜碎石术(URSL)后感染的危险因素。然而,针对术前尿培养中发现的病原体定制抗菌素预防(AP)的有效性尚不清楚。本研究旨在评估三种AP策略是否能减少URSL后的血流感染和脓毒症。方法:这项单中心回顾性观察研究于2019年4月至2025年3月在日本小木市医院进行。AP分为三类:符合指南的AP (GC-AP,不包括所有检测到的病原体),病原体定向AP (PD-AP,涵盖所有病原体,但不符合指南),增强型GC-AP (GC-AP或具有扩展抗生素谱的AP,术前尿培养中检测到的所有病原体都对其敏感)。比较三组患者URSL后血流感染和脓毒症的发生率。采用多变量logistic分析分析术后脓毒症的危险因素。结果:增强GC-AP组血流感染发生率低于GC-AP组(0.67% [1/149]vs. 8.11% [6/74], p = 0.0059)。PD-AP组未见血流感染。但PD-AP组脓毒症发生率明显高于增强GC-AP组(28.6%[8/28]比10.7% [16/149],p = 0.030)。多变量分析显示,增强的GC-AP可显著降低URSL后脓毒症的发生率(优势比:0.41,95%可信区间:0.18-0.93,p = 0.023)。结论:增强GC-AP可减少URSL后的血流感染和脓毒症。
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引用次数: 0
Characterization of thermostable antimicrobial and anti-inflammatory protein from marine Bacillus sp. 海洋芽孢杆菌耐热抗菌抗炎蛋白的研究。
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-05 DOI: 10.1016/j.jiac.2026.102919
Chinnarajan Ravindran, Eshana Mukhopadhyay, Lawrance Irudayarajan

Introduction: Marine microorganisms are rich in bioactive compounds having biotechnological significance. Hydrothermal vents are specifically home to unique microbial communities that have the ability to produce diverse compounds with therapeutic potential. This study aimed to isolate and characterize bioactive proteins from marine Bacillus sp. with antibacterial and anti-inflammatory properties and to evaluate their efficacy.

Methods: Bacillus sp. isolated from hydrothermal vents, have been grown optimally, with the partially purified extracellular protein fraction separated by ammonium sulfate precipitation and Sephadex G-10 gel filtration. The antimicrobial property was determined against the Methicillin-resistant Staphylococcus aureus (MRSA) and Vibrio vulnificus, with temperature stability studies conducted on the proteins. Zebrafish infection assays, together with lipopolysaccharide (LPS) challenges, served to determine the biological activity.

Results: A thermostable protein with a molecular weight of ⁓ 55 kDa showed strong inhibitory effects against MRSA and V. vulnificus. In the infection models using zebrafish, administration of the protein extract led to a substantial increase in survival rates (P < 0.01). Besides, a reduction in mRNA expression of pro-inflammatory cytokines (IL-1β, IL-6, TNF-α) was observed using RT-PCR analysis.

Conclusion: The thermostable Bacillus sp. protein exhibited both antibacterial and anti-inflammatory properties, indicating its potential for scale-up and biotherapeutic use.

海洋微生物富含具有生物技术意义的生物活性化合物。热液喷口是独特的微生物群落的家园,它们有能力产生具有治疗潜力的多种化合物。本研究旨在从海洋芽孢杆菌中分离和鉴定具有抗菌和抗炎特性的生物活性蛋白,并评价其功效。方法:对从热液喷口分离的芽孢杆菌进行最佳培养,用硫酸铵沉淀和Sephadex G-10凝胶过滤分离部分纯化的细胞外蛋白。测定了该蛋白对耐甲氧西林金黄色葡萄球菌(MRSA)和创伤弧菌的抗菌性能,并对其进行了温度稳定性研究。斑马鱼感染试验,连同脂多糖(LPS)挑战,用于确定生物活性。结果:一种分子量为⁓55 kDa的耐热蛋白对MRSA和创伤弧菌具有较强的抑制作用。在斑马鱼感染模型中,给予该蛋白提取物可显著提高斑马鱼的存活率(P)。结论:热稳定性的芽孢杆菌蛋白具有抗菌和抗炎特性,表明其具有扩大规模和生物治疗应用的潜力。
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引用次数: 0
Delayed Cutibacterium acnes infection of a thoracic aortic graft presenting as empyema: A case report and literature review. 胸主动脉移植物迟发性痤疮表皮杆菌感染表现为脓胸:1例报告并文献复习。
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1016/j.jiac.2026.102922
Jun Taguchi, Hiroshi Morioka, Yoshiyuki Tokuda, Tomonari Uemura, Hiroshi Hamada, Ken-Ichi Iwata, Kohei Kanda, Keisuke Oka, Tetsuya Yagi

Cutibacterium acnes is a low-virulence skin commensal that can cause late-onset prosthetic graft infections. We report the case of a 60-year-old man with diabetes who presented with fever and bilateral chest pain 10 months after an ascending aortic graft replacement. Computed tomography revealed right-sided pleural effusion and perigraft fluid collections; extended incubation of the pleural fluid and blood samples revealed C. acnes. Seven weeks after the intravenous antibiotic therapy, the patient underwent mediastinal irrigation, explantation of the infected graft, replacement with a rifampicin-soaked prosthesis, and omental flap coverage. Extended incubation of intraoperative specimens resulted in C. acnes in both samples. Following four additional weeks of intravenous antibiotic therapy, long-term oral amoxicillin suppression was initiated. At one-year follow-up, the patient remained clinically stable without evidence of recurrence. This case highlights the importance of extended incubation, vigilant diagnostic evaluation, and combined surgical and antimicrobial management in delayed C. acnes vascular graft infections. We also reviewed relevant literature on C. acnes prosthetic vascular infections to contextualize this case.

痤疮表皮杆菌是一种低毒力的皮肤共生菌,可引起迟发性假体移植物感染。我们报告的情况下,60岁的男性糖尿病谁提出发烧和双侧胸痛10个月后,升主动脉移植物更换。计算机断层扫描显示右侧胸腔积液和周围积液;胸腔液和血液样本的长期孵育显示有痤疮球菌。静脉抗生素治疗7周后,患者接受纵隔冲洗,移植感染的移植物,用利福平浸泡的假体置换,并覆盖大网膜瓣。术中标本的长时间孵育导致两个样本中都有痤疮芽孢杆菌。在额外的4周静脉抗生素治疗后,开始长期口服阿莫西林抑制。在一年的随访中,患者保持临床稳定,无复发迹象。本病例强调了延迟性痤疮C.血管移植物感染的延长潜伏期、警惕诊断评估以及外科和抗菌药物联合管理的重要性。我们还回顾了有关痤疮假体血管感染的相关文献,以了解本病例的背景。
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引用次数: 0
Definitive cefepime versus carbapenems for bacteremia caused by Enterobacterales with a risk of chromosomal AmpC production in children. 头孢吡肟与碳青霉烯类对儿童染色体AmpC产生风险肠杆菌引起的菌血症的决定性比较
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-04 DOI: 10.1016/j.jiac.2026.102923
Takashi Shoji, Yuto Otsubo, Yuho Horikoshi

Background: In adults, cefepime is proposed as a treatment option for infections associated with a risk of AmpC β-lactamase overproduction; however, data in pediatric populations are limited. We aimed to compare clinical outcomes between cefepime versus carbapenem as definitive therapy for bacteremia caused by Enterobacterales with a relatively high risk of chromosomal AmpC production (AmpC-E) in children.

Methods: This retrospective cohort study was conducted at a tertiary children's hospital between 2010 and 2024. Eligible patients were <21 years old with blood cultures positive for AmpC-E. The primary outcome was 30-day mortality. Secondary outcomes included 30-day recurrence, time to negative blood culture and treatment-related toxicity.

Results: 51 children met the inclusion criteria. The median age was 11 months (IQR: 3-63), with 54.9% male patients. Cefepime and meropenem were administered as definitive therapy in 38 (74.5%) and 13 (25.5%) cases. Baseline characteristics of the patients were comparable. Isolated organisms included Enterobacter cloacae complex (47.1%), Serratia marcescens (29.4%) and Klebsiella aerogenes (19.6%). The cefepime group had a higher prevalence of Klebsiella aerogenes (26.3%, p = 0.048) and Serratia marcescens (39.5%, p = 0.006). The 30-day mortality was 2.6% (1/38) in the cefepime group and 15.4% (2/13) in the meropenem group (p = 0.156). No recurrence of bacteremia or treatment-related toxicity were observed. The median time to negative blood cultures was 2 days (IQR: 1-3) in the cefepime group and 1 day (IQR: 1-5) in the meropenem group (p = 0.949).

Conclusion: Cefepime and meropenem as definitive therapy demonstrated comparable outcomes for AmpC-E bacteremia. Further prospective studies are warranted.

背景:在成人中,头孢吡肟被建议作为与AmpC β-内酰胺酶过量产生风险相关的感染的治疗选择;然而,儿科人群的数据是有限的。我们的目的是比较头孢吡肟和碳青霉烯作为儿童染色体AmpC产生(AmpC- e)风险相对较高的肠杆菌引起的菌血症的决定性治疗的临床结果。方法:回顾性队列研究于2010年至2024年在某三级儿童医院进行。结果:51例患儿符合纳入标准。中位年龄为11个月(IQR: 3-63),男性占54.9%。头孢吡肟和美罗培南分别为38例(74.5%)和13例(25.5%)。患者的基线特征具有可比性。分离出的细菌包括阴沟肠杆菌(47.1%)、粘质沙雷菌(29.4%)和产气克雷伯菌(19.6%)。头孢吡肟组产气克雷伯菌(26.3%,p=0.048)和粘质沙雷菌(39.5%,p=0.006)患病率较高。头孢吡肟组30天死亡率为2.6%(1/38),美罗培南组30天死亡率为15.4% (2/13)(p=0.156)。未观察到菌血症复发或治疗相关毒性。头孢吡肟组中位血培养阴性时间为2 d (IQR: 1 ~ 3),美罗培南组中位血培养阴性时间为1 d (IQR: 1 ~ 5) (p=0.949)。结论:头孢吡肟和美罗培南作为最终治疗AmpC-E菌血症的效果相当。进一步的前瞻性研究是必要的。
{"title":"Definitive cefepime versus carbapenems for bacteremia caused by Enterobacterales with a risk of chromosomal AmpC production in children.","authors":"Takashi Shoji, Yuto Otsubo, Yuho Horikoshi","doi":"10.1016/j.jiac.2026.102923","DOIUrl":"10.1016/j.jiac.2026.102923","url":null,"abstract":"<p><strong>Background: </strong>In adults, cefepime is proposed as a treatment option for infections associated with a risk of AmpC β-lactamase overproduction; however, data in pediatric populations are limited. We aimed to compare clinical outcomes between cefepime versus carbapenem as definitive therapy for bacteremia caused by Enterobacterales with a relatively high risk of chromosomal AmpC production (AmpC-E) in children.</p><p><strong>Methods: </strong>This retrospective cohort study was conducted at a tertiary children's hospital between 2010 and 2024. Eligible patients were <21 years old with blood cultures positive for AmpC-E. The primary outcome was 30-day mortality. Secondary outcomes included 30-day recurrence, time to negative blood culture and treatment-related toxicity.</p><p><strong>Results: </strong>51 children met the inclusion criteria. The median age was 11 months (IQR: 3-63), with 54.9% male patients. Cefepime and meropenem were administered as definitive therapy in 38 (74.5%) and 13 (25.5%) cases. Baseline characteristics of the patients were comparable. Isolated organisms included Enterobacter cloacae complex (47.1%), Serratia marcescens (29.4%) and Klebsiella aerogenes (19.6%). The cefepime group had a higher prevalence of Klebsiella aerogenes (26.3%, p = 0.048) and Serratia marcescens (39.5%, p = 0.006). The 30-day mortality was 2.6% (1/38) in the cefepime group and 15.4% (2/13) in the meropenem group (p = 0.156). No recurrence of bacteremia or treatment-related toxicity were observed. The median time to negative blood cultures was 2 days (IQR: 1-3) in the cefepime group and 1 day (IQR: 1-5) in the meropenem group (p = 0.949).</p><p><strong>Conclusion: </strong>Cefepime and meropenem as definitive therapy demonstrated comparable outcomes for AmpC-E bacteremia. Further prospective studies are warranted.</p>","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":" ","pages":"102923"},"PeriodicalIF":1.5,"publicationDate":"2026-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146131602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Maternal RSV vaccination in Japan: Beyond financial barriers toward the 2026 routine immunization transition 日本母亲RSV疫苗接种:克服财政障碍,向2026年常规免疫过渡
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-02 DOI: 10.1016/j.jiac.2026.102920
Masaki Machida
{"title":"Maternal RSV vaccination in Japan: Beyond financial barriers toward the 2026 routine immunization transition","authors":"Masaki Machida","doi":"10.1016/j.jiac.2026.102920","DOIUrl":"10.1016/j.jiac.2026.102920","url":null,"abstract":"","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":"32 3","pages":"Article 102920"},"PeriodicalIF":1.5,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146098609","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive genomic analysis of ESBL- and carbapenemase-producing Escherichia coli ST131 in Japan: Genetic characteristics of pandemic clade C 日本产ESBL-和碳青霉烯酶大肠杆菌ST131的综合基因组分析:大流行进化支C的遗传特征
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-01 DOI: 10.1016/j.jiac.2026.102915
Akihiro Nakamura , Tatsuya Nakamura , Makoto Niki , Tomokazu Kuchibiro , Katsutoshi Yamasaki , Masaru Komatsu , The Study of Bacterial Resistance in the Kinki region of Japan (SBRK) group

Introduction

The global dissemination of extended-spectrum β-lactamase (ESBL)- and carbapenemase-producing Escherichia coli sequence type 131 (ST131), particularly clade C, represents a major public health concern. However, the clade-specific genomic features underlying the long-term persistence and international spread of this lineage remain incompletely understood.

Methods

We performed whole-genome sequencing and comparative genomic analyses of 121 clinical E. coli isolates, including 83 ST131 and 38 non-ST131 strains, collected from 24 healthcare-associated facilities in Japan between 2001 and 2018. Plasmid replicon types, antimicrobial resistance genes, virulence factors, quinolone resistance–determining region (QRDR) mutations, and chromosomal structural variations were analyzed across ST131 clades.

Results

ST131 isolates, particularly clade C, showed a significantly higher prevalence of IncF plasmid replicons, QRDR mutations, and uropathogenic virulence genes such as iha, papA, kpsM, and usp compared with non-ST131 isolates. In contrast, dfrA family genes were less frequent in clade C, suggesting potential retained susceptibility to trimethoprim–sulfamethoxazole. Phylogenetic analysis demonstrated long-term persistence of clade C subclades (C1-nM27, C1-M27, and C2) in Japan. A clade-specific chromosomal region, M27PP1, encoding an ATP-binding protein with a conserved AAA + ATPase domain within a clade-specific genomic island, was identified exclusively in C1-M27 isolates.

Conclusions

Our findings highlight distinct clade-specific genomic characteristics of ST131 clade C in Japan, particularly in C1-M27. While the biological function of M27PP1 remains to be experimentally determined, its lineage-restricted distribution suggests a potential role in the long-term persistence and dissemination of this subclade. Continued genomic surveillance is essential for understanding and controlling high-risk E. coli lineages.
产生β-内酰胺酶(ESBL)和碳青霉烯酶的大肠杆菌序列131型(ST131)的全球传播,特别是C支,是一个主要的公共卫生问题。然而,这一谱系长期存在和国际传播背后的进化支特异性基因组特征仍然不完全清楚。方法:我们对2001年至2018年间从日本24家医疗保健相关机构收集的121株临床大肠杆菌进行了全基因组测序和比较基因组分析,其中包括83株ST131和38株非ST131菌株。分析了ST131分支的质粒复制子类型、耐药基因、毒力因子、喹诺酮类药物耐药决定区(QRDR)突变和染色体结构变异。结果:与非ST131分离株相比,ST131分离株,特别是进化支C,显示出显著更高的IncF质粒复制子、QRDR突变和尿路致病毒力基因(如iha、papA、kpsM和usp)的患病率。相比之下,dfrA家族基因在C进化支中较少出现,表明可能保留对甲氧苄啶-磺胺甲恶唑的易感性。系统发育分析表明,日本的C亚支(C1-nM27、C1-M27和C2)长期存在。在C1-M27分离株中发现了一个进化枝特异性染色体区域M27PP1,该区域编码一个具有保守AAA+ atp酶结构域的atp结合蛋白,该区域位于进化枝特异性基因组岛中。结论:我们的研究结果突出了日本ST131进化支C的独特进化支特异性基因组特征,特别是C1-M27。虽然M27PP1的生物学功能仍有待实验确定,但其谱系限制的分布表明其在该亚支系的长期持续和传播中具有潜在作用。持续的基因组监测对于了解和控制高风险的大肠杆菌谱系至关重要。
{"title":"Comprehensive genomic analysis of ESBL- and carbapenemase-producing Escherichia coli ST131 in Japan: Genetic characteristics of pandemic clade C","authors":"Akihiro Nakamura ,&nbsp;Tatsuya Nakamura ,&nbsp;Makoto Niki ,&nbsp;Tomokazu Kuchibiro ,&nbsp;Katsutoshi Yamasaki ,&nbsp;Masaru Komatsu ,&nbsp;The Study of Bacterial Resistance in the Kinki region of Japan (SBRK) group","doi":"10.1016/j.jiac.2026.102915","DOIUrl":"10.1016/j.jiac.2026.102915","url":null,"abstract":"<div><h3>Introduction</h3><div>The global dissemination of extended-spectrum β-lactamase (ESBL)- and carbapenemase-producing <em>Escherichia coli</em> sequence type 131 (ST131), particularly clade C, represents a major public health concern. However, the clade-specific genomic features underlying the long-term persistence and international spread of this lineage remain incompletely understood.</div></div><div><h3>Methods</h3><div>We performed whole-genome sequencing and comparative genomic analyses of 121 clinical <em>E. coli</em> isolates, including 83 ST131 and 38 non-ST131 strains, collected from 24 healthcare-associated facilities in Japan between 2001 and 2018. Plasmid replicon types, antimicrobial resistance genes, virulence factors, quinolone resistance–determining region (QRDR) mutations, and chromosomal structural variations were analyzed across ST131 clades.</div></div><div><h3>Results</h3><div>ST131 isolates, particularly clade C, showed a significantly higher prevalence of IncF plasmid replicons, QRDR mutations, and uropathogenic virulence genes such as <em>iha</em>, <em>papA</em>, <em>kpsM</em>, and <em>usp</em> compared with non-ST131 isolates. In contrast, <em>dfrA</em> family genes were less frequent in clade C, suggesting potential retained susceptibility to trimethoprim–sulfamethoxazole. Phylogenetic analysis demonstrated long-term persistence of clade C subclades (C1-nM27, C1-M27, and C2) in Japan. A clade-specific chromosomal region, M27PP1, encoding an ATP-binding protein with a conserved AAA + ATPase domain within a clade-specific genomic island, was identified exclusively in C1-M27 isolates.</div></div><div><h3>Conclusions</h3><div>Our findings highlight distinct clade-specific genomic characteristics of ST131 clade C in Japan, particularly in C1-M27. While the biological function of M27PP1 remains to be experimentally determined, its lineage-restricted distribution suggests a potential role in the long-term persistence and dissemination of this subclade. Continued genomic surveillance is essential for understanding and controlling high-risk <em>E. coli</em> lineages.</div></div>","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":"32 2","pages":"Article 102915"},"PeriodicalIF":1.5,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146046859","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of the genetic basis of a CO2-dependent Staphylococcus aureus small-colony variant isolated from pacemaker leads. 从起搏器导联分离的co2依赖性金黄色葡萄球菌小菌落变异的遗传基础鉴定。
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-01 Epub Date: 2026-01-27 DOI: 10.1016/j.jiac.2026.102917
Tatsuya Negishi, Yuuki Higuma, Aika Takeda, Ayaka Hachiro, Tatsuya Natori, Kazuki Horiuchi, Nau Ishimine, Takeshi Uehara, Takehisa Matsumoto

Purpose: Small-colony variants (SCVs) are a slow-growing subset of bacteria that exhibit unusual colony morphology and unique biochemical characteristics. They are associated with chronic and persistent infections. CO2-dependent SCVs of Staphylococcus aureus have been rarely isolated from clinical specimens. This study aimed to characterize the CO2-dependent phenotype of S. aureus SCV isolated from pacemaker leads and to determine the genetic basis underlying this trait.

Methods: CO2-dependent S. aureus SCV-5700 isolated from pacemaker leads of a patient with a pacemaker infection was used in this study. Phenotypic testing, antimicrobial susceptibility testing, and mecA polymerase chain reaction of the isolate were performed. Moreover, whole-genome sequencing was conducted for multilocus sequence typing and comparative genomic analysis.

Results: CO2-dependent S. aureus SCV-5700 grew poorly under ambient air conditions; however, tiny colonies formed after 48 h incubation. The isolate was sequence type 45 and did not harbor the mecA. The isolate was identified as S. aureus by biochemical characterization in a 5 % CO2 atmosphere. Comparative genomic analysis revealed that the isolate had a nonsense mutation (c.565C>T) in the mpsB; however, the revertant strain, Rev-5700, had no such mutation.

Conclusion: The CO2-dependent phenotype of clinical S. aureus isolates can be attributed, in part, to loss of MpsB function.

目的:小菌落变异(scv)是一种生长缓慢的细菌,具有不同寻常的菌落形态和独特的生化特征。它们与慢性和持续性感染有关。二氧化碳依赖性金黄色葡萄球菌scv很少从临床标本中分离出来。本研究旨在表征从起搏器导联中分离的金黄色葡萄球菌SCV的二氧化碳依赖性表型,并确定该性状的遗传基础。方法:本研究使用从起搏器感染患者的起搏器导联中分离的二氧化碳依赖性金黄色葡萄球菌SCV-5700。对分离物进行表型检测、药敏试验和mecA聚合酶链反应。进行全基因组测序,进行多位点序列分型和比较基因组分析。结果:co2依赖性金黄色葡萄球菌SCV-5700在环境空气条件下生长较差;然而,孵育48小时后形成微小菌落。分离物为序列45型,不含mecA。在5% CO2气氛中经生化鉴定为金黄色葡萄球菌。比较基因组分析显示,该分离物在mpsB中有一个无义突变(c.565C>T);然而,逆转录菌株Rev-5700没有这种突变。结论:临床金黄色葡萄球菌分离株的co2依赖表型可部分归因于MpsB功能的丧失。
{"title":"Identification of the genetic basis of a CO<sub>2</sub>-dependent Staphylococcus aureus small-colony variant isolated from pacemaker leads.","authors":"Tatsuya Negishi, Yuuki Higuma, Aika Takeda, Ayaka Hachiro, Tatsuya Natori, Kazuki Horiuchi, Nau Ishimine, Takeshi Uehara, Takehisa Matsumoto","doi":"10.1016/j.jiac.2026.102917","DOIUrl":"10.1016/j.jiac.2026.102917","url":null,"abstract":"<p><strong>Purpose: </strong>Small-colony variants (SCVs) are a slow-growing subset of bacteria that exhibit unusual colony morphology and unique biochemical characteristics. They are associated with chronic and persistent infections. CO<sub>2</sub>-dependent SCVs of Staphylococcus aureus have been rarely isolated from clinical specimens. This study aimed to characterize the CO<sub>2</sub>-dependent phenotype of S. aureus SCV isolated from pacemaker leads and to determine the genetic basis underlying this trait.</p><p><strong>Methods: </strong>CO<sub>2</sub>-dependent S. aureus SCV-5700 isolated from pacemaker leads of a patient with a pacemaker infection was used in this study. Phenotypic testing, antimicrobial susceptibility testing, and mecA polymerase chain reaction of the isolate were performed. Moreover, whole-genome sequencing was conducted for multilocus sequence typing and comparative genomic analysis.</p><p><strong>Results: </strong>CO<sub>2</sub>-dependent S. aureus SCV-5700 grew poorly under ambient air conditions; however, tiny colonies formed after 48 h incubation. The isolate was sequence type 45 and did not harbor the mecA. The isolate was identified as S. aureus by biochemical characterization in a 5 % CO<sub>2</sub> atmosphere. Comparative genomic analysis revealed that the isolate had a nonsense mutation (c.565C>T) in the mpsB; however, the revertant strain, Rev-5700, had no such mutation.</p><p><strong>Conclusion: </strong>The CO<sub>2</sub>-dependent phenotype of clinical S. aureus isolates can be attributed, in part, to loss of MpsB function.</p>","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":" ","pages":"102917"},"PeriodicalIF":1.5,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146086020","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical and Microbiological Characteristics of macrolide-resistant Bordetella pertussis Infection: A case series in Osaka, Japan (2024–2025) 日本大阪地区2024-2025年大环内酯耐药百日咳博德泰菌感染临床及微生物学特征分析
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-01 DOI: 10.1016/j.jiac.2026.102916
Kimihiro Taniguchi , Takahiro Yamaguchi , Kenichi Isoda , Masashi Shiomi , Yasuhiro Kawasaki , Kiyoko Amo , Yuki Wakabayashi , Ryuji Kawahara , Masatoshi Nozaki

Background

Although macrolide antibiotics are an effective first-line treatment for pertussis, the global emergence and spread of macrolide-resistant Bordetella pertussis (MRBP) presents a significant threat to antimicrobial treatment strategies. However, the current status of MRBP in Japan remains unclear due to the lack of a surveillance system. This study aimed to highlight the emergence and clinical impact of MRBP in Osaka, Japan.

Methods

We retrospectively reviewed cases of patients with pertussis whose B. pertussis strains were analyzed at the Osaka Institute of Public Health between August 2024 and January 2025. Information on the patients’ clinical characteristics, therapeutic interventions, antimicrobial susceptibility, and molecular analysis of B. pertussis strains was collected. During the study period, eight B. pertussis strains were analyzed.

Results

Seven of the eight (87.5 %) B. pertussis strains were macrolide resistant. All of the MRBP strains were highly resistant to macrolide antibiotics and carried the A2047G mutation in domain V of the 23S rRNA gene. Seven of the patients were pediatric; four of whom had not been fully vaccinated due to their young age. One unvaccinated 31-day-old infant experienced clinical and microbiological treatment failure following macrolide administration, resulting in severe hypoxia and lymphocytosis.

Conclusions

This descriptive analysis of recent pertussis cases in Osaka identified a high proportion of macrolide-resistant strains among the analyzed cases. Notably, one infant developed severe disease despite macrolide treatment. These findings support the urgent need for nationwide surveillance of macrolide resistance in Japan and the establishment of an appropriate initial antimicrobial strategy for suspected MRBP.
尽管大环内酯类抗生素是治疗百日咳的一线有效药物,但耐大环内酯类百日咳博德tella百日咳(MRBP)的全球出现和传播对抗菌药物治疗策略构成了重大威胁。然而,由于缺乏监测系统,MRBP在日本的现状仍然不清楚。本研究旨在强调MRBP在日本大阪的出现和临床影响。方法回顾性分析2024年8月至2025年1月在大阪公共卫生研究所分析的百日咳患者的百日咳菌株。收集患者的临床特征、治疗干预、抗菌药物敏感性和百日咳菌株分子分析等信息。在研究期间,对8株百日咳菌株进行了分析。结果8株百日咳分枝杆菌中有7株(87.5%)对大环内酯耐药。所有MRBP菌株均对大环内酯类抗生素具有高度耐药性,并携带23S rRNA基因V结构域A2047G突变。其中7名患者为儿科;其中四人由于年龄太小而没有完全接种疫苗。1例未接种大环内酯疫苗的31日龄婴儿在服用大环内酯后出现临床和微生物治疗失败,导致严重缺氧和淋巴细胞增多。结论对大阪近期百日咳病例的描述性分析发现,在所分析的病例中,大环内酯耐药菌株的比例很高。值得注意的是,尽管大环内酯治疗,仍有一名婴儿出现严重疾病。这些发现支持日本迫切需要在全国范围内监测大环内酯类药物耐药性,并为疑似MRBP建立适当的初始抗微生物策略。
{"title":"Clinical and Microbiological Characteristics of macrolide-resistant Bordetella pertussis Infection: A case series in Osaka, Japan (2024–2025)","authors":"Kimihiro Taniguchi ,&nbsp;Takahiro Yamaguchi ,&nbsp;Kenichi Isoda ,&nbsp;Masashi Shiomi ,&nbsp;Yasuhiro Kawasaki ,&nbsp;Kiyoko Amo ,&nbsp;Yuki Wakabayashi ,&nbsp;Ryuji Kawahara ,&nbsp;Masatoshi Nozaki","doi":"10.1016/j.jiac.2026.102916","DOIUrl":"10.1016/j.jiac.2026.102916","url":null,"abstract":"<div><h3>Background</h3><div>Although macrolide antibiotics are an effective first-line treatment for pertussis, the global emergence and spread of macrolide-resistant <em>Bordetella pertussis</em> (MRBP) presents a significant threat to antimicrobial treatment strategies. However, the current status of MRBP in Japan remains unclear due to the lack of a surveillance system. This study aimed to highlight the emergence and clinical impact of MRBP in Osaka, Japan.</div></div><div><h3>Methods</h3><div>We retrospectively reviewed cases of patients with pertussis whose <em>B. pertussis</em> strains were analyzed at the Osaka Institute of Public Health between August 2024 and January 2025. Information on the patients’ clinical characteristics, therapeutic interventions, antimicrobial susceptibility, and molecular analysis of <em>B. pertussis</em> strains was collected. During the study period, eight <em>B. pertussis</em> strains were analyzed.</div></div><div><h3>Results</h3><div>Seven of the eight (87.5 %) <em>B. pertussis</em> strains were macrolide resistant. All of the MRBP strains were highly resistant to macrolide antibiotics and carried the A2047G mutation in domain V of the 23S rRNA gene. Seven of the patients were pediatric; four of whom had not been fully vaccinated due to their young age. One unvaccinated 31-day-old infant experienced clinical and microbiological treatment failure following macrolide administration, resulting in severe hypoxia and lymphocytosis.</div></div><div><h3>Conclusions</h3><div>This descriptive analysis of recent pertussis cases in Osaka identified a high proportion of macrolide-resistant strains among the analyzed cases. Notably, one infant developed severe disease despite macrolide treatment. These findings support the urgent need for nationwide surveillance of macrolide resistance in Japan and the establishment of an appropriate initial antimicrobial strategy for suspected MRBP.</div></div>","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":"32 2","pages":"Article 102916"},"PeriodicalIF":1.5,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146078890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pneumonia in frail older adults: from diagnosis to optimized management 体弱老年人肺炎:从诊断到优化管理1。
IF 1.5 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2026-02-01 DOI: 10.1016/j.jiac.2026.102914
Kosaku Komiya , Yuki Yoshimatsu , Akihiko Hagiwara , Ryohei Kudoh , Hisayuki Shuto , Izumi Yamatani , Akihiko Goto
In the context of global population aging, pneumonia in older adults has become increasingly prevalent; frequently fatal; and remains challenging to diagnose, treat, and manage in alignment with patient goals. This narrative review synthesized contemporary evidence on pneumonia, particularly aspiration pneumonia, in older adults, integrating perspectives from diagnosis, antimicrobial management, prognosis, prevention, and end-of-life care. In this population, pneumonia often presents with atypical or nonspecific manifestations. Aspiration events are rarely directly observed, and current diagnostic definitions remain imprecise. Outcomes are predominantly driven by host-related factors, including frailty, dysphagia, multimorbidity, functional decline, and malnutrition, and conventional severity scores perform sub-optimally. Evidence from large observational studies indicated that early broad-spectrum or anaerobic-covering antibiotics provided limited survival benefit and may contribute to antimicrobial resistance, underscoring the importance of distinguishing colonization from true infection and adopting a stewardship-oriented approach. Preventive strategies include oral hygiene, postural and dietary modification, judicious medication review, and vaccination against major respiratory pathogens. In individuals with advanced frailty or recurrent pneumonia, multidisciplinary, ethically grounded, and shared decision-making on oral intake, eating and drinking with acknowledged risk, clinically assisted nutrition and hydration, and the role of antibiotics is required. Overall, pneumonia in older adults, particularly aspiration pneumonia, should be regarded as both an infectious disease and a clinical phenotype of age-associated vulnerability, which warrant a multidimensional approach that integrates geriatric assessment, antimicrobial stewardship, targeted prevention, and end-of-life care planning.
在全球人口老龄化的背景下,老年人肺炎越来越普遍;经常致命;根据患者的目标进行诊断、治疗和管理仍然具有挑战性。这篇叙述性综述综合了关于老年人肺炎,特别是吸入性肺炎的当代证据,整合了从诊断、抗菌药物管理、预后、预防和临终关怀等方面的观点。在这个人群中,肺炎通常表现为非典型或非特异性表现。吸入事件很少直接观察到,目前的诊断定义仍然不精确。结果主要由宿主相关因素驱动,包括虚弱、吞咽困难、多病、功能下降和营养不良,传统的严重程度评分表现不佳。来自大型观察性研究的证据表明,早期广谱或覆盖厌氧的抗生素提供有限的生存益处,并可能导致抗菌素耐药性,强调区分定植与真正感染的重要性,并采取以管理为导向的方法。预防策略包括口腔卫生、姿势和饮食改变、明智的药物审查以及针对主要呼吸道病原体的疫苗接种。对于患有晚期虚弱或复发性肺炎的个体,需要多学科、基于伦理的共同决策,包括口服摄入、已知风险的饮食、临床辅助营养和水合作用以及抗生素的作用。总体而言,老年人的肺炎,特别是吸入性肺炎,应被视为一种传染病和年龄相关易感性的临床表型,这需要一种多维方法,将老年评估、抗菌药物管理、有针对性的预防和临终关怀规划结合起来。
{"title":"Pneumonia in frail older adults: from diagnosis to optimized management","authors":"Kosaku Komiya ,&nbsp;Yuki Yoshimatsu ,&nbsp;Akihiko Hagiwara ,&nbsp;Ryohei Kudoh ,&nbsp;Hisayuki Shuto ,&nbsp;Izumi Yamatani ,&nbsp;Akihiko Goto","doi":"10.1016/j.jiac.2026.102914","DOIUrl":"10.1016/j.jiac.2026.102914","url":null,"abstract":"<div><div>In the context of global population aging, pneumonia in older adults has become increasingly prevalent; frequently fatal; and remains challenging to diagnose, treat, and manage in alignment with patient goals. This narrative review synthesized contemporary evidence on pneumonia, particularly aspiration pneumonia, in older adults, integrating perspectives from diagnosis, antimicrobial management, prognosis, prevention, and end-of-life care. In this population, pneumonia often presents with atypical or nonspecific manifestations. Aspiration events are rarely directly observed, and current diagnostic definitions remain imprecise. Outcomes are predominantly driven by host-related factors, including frailty, dysphagia, multimorbidity, functional decline, and malnutrition, and conventional severity scores perform sub-optimally. Evidence from large observational studies indicated that early broad-spectrum or anaerobic-covering antibiotics provided limited survival benefit and may contribute to antimicrobial resistance, underscoring the importance of distinguishing colonization from true infection and adopting a stewardship-oriented approach. Preventive strategies include oral hygiene, postural and dietary modification, judicious medication review, and vaccination against major respiratory pathogens. In individuals with advanced frailty or recurrent pneumonia, multidisciplinary, ethically grounded, and shared decision-making on oral intake, eating and drinking with acknowledged risk, clinically assisted nutrition and hydration, and the role of antibiotics is required. Overall, pneumonia in older adults, particularly aspiration pneumonia, should be regarded as both an infectious disease and a clinical phenotype of age-associated vulnerability, which warrant a multidimensional approach that integrates geriatric assessment, antimicrobial stewardship, targeted prevention, and end-of-life care planning.</div></div>","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":"32 2","pages":"Article 102914"},"PeriodicalIF":1.5,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146044197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of Infection and Chemotherapy
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