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Characteristics of virus and antibody response in an immunocompromised patient with persistent SARS-CoV-2 infection. 一名持续感染 SARS-CoV-2 的免疫功能低下患者的病毒特征和抗体反应。
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-02-01 Epub Date: 2024-08-30 DOI: 10.1016/j.jiac.2024.08.024
Shunsuke Yazawa, Kei Fukuyama, Rie Kawakami, Masae Itamochi, Daiki Higashi, Noriaki Tsuji, Masahiko Nakamura, Kazunori Oishi, Hiroyasu Kaya, Hideki Tani

We have previously reported a clinical case in which a hospitalized patient with a history of hematopoietic stem cell transplantation for acute myeloid leukemia was persistently infected with SARS-CoV-2. This study investigated the neutralizing activity of patient sera against cultured viruses isolated at each time point. We also continued to decipher and analyze the whole-genome sequence of the virus. The results showed that the neutralizing activity against the cultured virus at each time point was higher in the sera collected in the late stage of infection. However, the cultured virus collected in the late stage of infection was less likely to be neutralized not only by the sera collected in the early stage of infection but also by the sera collected in the late stage. Moreover, the virus mutated in a manner that allowed it to escape neutralizing antibodies in a host vulnerable to prolonged infection, such as immunocompromised patients.

我们曾报道过一个临床病例,一名曾因急性髓性白血病接受造血干细胞移植的住院病人持续感染了 SARS-CoV-2 病毒。这项研究调查了患者血清对各时间点分离出的培养病毒的中和活性。我们还继续破译和分析了病毒的全基因组序列。结果显示,在感染后期采集的血清对各时间点培养病毒的中和活性较高。然而,在感染晚期采集的培养病毒不仅不易被感染早期采集的血清中和,而且也不易被感染晚期采集的血清中和。此外,病毒变异的方式使其能够在易受长期感染的宿主(如免疫力低下的病人)体内逃避中和抗体的作用。
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引用次数: 0
The use of concomitant medications on nephrotoxicity associated with teicoplanin: A retrospective observational study. 使用伴随药物对替考拉宁相关肾毒性的影响:一项回顾性观察研究。
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-02-01 Epub Date: 2024-09-03 DOI: 10.1016/j.jiac.2024.08.026
Yuki Shimizu, Kazuhiko Hanada, Takeaki Watanabe, Yuka Sasaki, Tomoka Yamazaki, Emi Komasaka, Keiko Kadota

Background: Teicoplanin (TEIC) is a nephrotoxic agent. However, little is known about the effects of concomitant medications on nephrotoxicity. In this study, we investigated the effects of concomitant drugs on nephrotoxicity.

Methods: A retrospective observational case-control study was conducted on patients (≥18 years) who started TEIC at the Tokyo Dental College, Ichikawa General Hospital, between January 2013 and April 2023. The primary outcome was nephrotoxicity, defined as an increase in serum creatinine levels of ≥50 % or ≥0.5 mg/dL from baseline. Logistic regression analysis was used to determine the risk factors for nephrotoxicity associated with TEIC. In addition, we investigated the relationship between nephrotoxicity and predicted free TEIC concentrations.

Results: Of 305 patients, 43 (14.1 %) developed nephrotoxicity. The multivariate logistic regression analysis identified that serum albumin (odds ratio [OR] = 0.50, 95 % confidence interval [CI] 0.27-0.89, p = 0.02), concomitant use of loop diuretics (OR = 2.22, 95 % CI 1.10-4.59, p = 0.03), antivirals (OR = 3.24, 95 % CI 1.32-7.62, p < 0.01), and vasopressors (OR = 2.57, 95 % CI 1.10-5.78, p = 0.03) were the associated risk factors for nephrotoxicity in patients administered with TEIC. In 216 patients, predicted TEIC concentrations were 3.6 [interquartile range (IQR), 2.6-4.9] μg/mL in the nephrotoxicity group versus 3.6 [IQR, 2.5-4.7] μg/mL in the non-nephrotoxicity group, with no significant difference (p = 0.69).

Conclusion: Our results indicate the importance of modifying the concomitant use of loop diuretics, antivirals, and vasopressors.

背景:替考拉宁(TEIC)是一种肾毒性药物。然而,人们对伴随药物对肾毒性的影响知之甚少。本研究调查了伴随药物对肾毒性的影响:方法:我们对 2013 年 1 月至 2023 年 4 月期间在东京牙科大学市川综合医院开始接受 TEIC 治疗的患者(≥18 岁)进行了一项回顾性病例对照观察研究。主要结果是肾毒性,定义为血清肌酐水平比基线增加≥50%或≥0.5 mg/dL。我们采用逻辑回归分析来确定与 TEIC 相关的肾毒性风险因素。此外,我们还研究了肾毒性与预测游离 TEIC 浓度之间的关系:在 305 名患者中,43 人(14.1%)出现了肾毒性。多变量逻辑回归分析发现,血清白蛋白(几率比[OR] = 0.50,95% 置信区间[CI] 0.27-0.89,P=0.02)、同时使用襻利尿剂(OR = 2.22,95% CI 1.10-4.59,P=0.03)、抗病毒药物(OR = 3.24,95% CI 1.32-7.62,P 结论:我们的研究结果表明,调整肾毒性与预测游离 TEIC 浓度之间的关系非常重要:我们的研究结果表明,改变同时使用襻利尿剂、抗病毒药物和血管加压药的做法非常重要。
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引用次数: 0
Effectiveness of letermovir in preventing cytomegalovirus reactivation after cord blood transplantation. 利特莫韦预防脐带血移植后巨细胞病毒再激活的疗效。
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-02-01 Epub Date: 2024-12-03 DOI: 10.1016/j.jiac.2024.12.002
Naoki Okada, Hiroyuki Muranushi, Kazuya Okada, Takayuki Sato, Tatsuhito Onishi, Yasunori Ueda, Takeshi Maeda

Background: Cord blood transplantation (CBT) is associated with a high risk of cytomegalovirus (CMV) infection. Letermovir (LTV) is a prophylactic agent against CMV reactivation after CBT, but data on its effectiveness and the incidence of late CMV reactivation after LTV discontinuation are limited.

Methods: A single-center retrospective observational study was conducted in 79 adult CMV-seropositive CBT recipients who received their first transplant for acute myeloid leukemia, acute lymphoblastic leukemia, or myelodysplastic syndrome from February 2016 to September 2022. Outcomes were compared between 45 patients who received LTV prophylaxis and 34 patients who did not.

Results: The cumulative incidence of CMV reactivation was significantly lower in patients who received LTV prophylaxis at both day 100 (11.1 % vs. 82.4 %, p < 0.001) and 1 year (45.3 % vs. 82.4 %, p < 0.001). The incidence of late CMV reactivation after LTV discontinuation was 34.2 %. The cumulative incidence of CMV disease was comparable between patients who received and those who did not (0 % vs. 8.8 % at day 100, 2.3 % vs. 8.8 % at 1 year; p = 0.181). Multivariate analysis showed that LTV prophylaxis reduced the cumulative incidence of CMV reactivation (hazard ratio 0.20, 95 % confidence interval 0.09 to 0.42, p < 0.001).

Conclusion: LTV prophylaxis is strongly associated with prevention of CMV reactivation after CBT. Due to the high incidence of late CMV reactivation, close monitoring is required after LTV discontinuation and extension of LTV prophylaxis beyond day 100 should be considered.

背景:脐带血移植(CBT)与巨细胞病毒(CMV)感染的高风险相关。Letermovir (LTV)是一种预防CBT后CMV再激活的药物,但关于其有效性和LTV停药后晚期CMV再激活发生率的数据有限。方法:2016年2月至2022年9月,对79例成人cmv血清阳性CBT患者进行了单中心回顾性观察研究,这些患者因急性髓性白血病、急性淋巴细胞白血病或骨髓增生异常综合征接受了首次移植。结果比较了45例接受LTV预防的患者和34例未接受LTV预防的患者。结果:接受LTV预防的患者在第100天(11.1% vs. 82.4%, p < 0.001)和第1年(45.3% vs. 82.4%, p < 0.001) CMV再激活的累积发生率均显著降低。LTV停药后晚期CMV再激活的发生率为34.2%。CMV疾病的累积发病率在接受治疗和未接受治疗的患者之间具有可比性(第100天0%对8.8%,1年2.3%对8.8%;P = 0.181)。多因素分析显示,预防LTV可降低CMV再激活的累积发生率(风险比0.20,95%可信区间0.09 ~ 0.42,p < 0.001)。结论:LTV预防与CBT后CMV再激活的预防密切相关。由于晚期巨细胞病毒再激活的发生率很高,在LTV停止后需要密切监测,并应考虑将LTV预防延长至100天以上。
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引用次数: 0
Duration of infectious virus shedding of SARS-CoV-2 Omicron variant among immunocompromised patients.
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-01-21 DOI: 10.1016/j.jiac.2025.102631
Kohei Kamegai, Naoya Itoh, Masahiro Ishikane, Noriko Iwamoto, Yusuke Asai, Nana Akazawa-Kai, Noriko Fuwa, Jin Takasaki, Masayuki Hojo, Akira Hangaishi, Tomiteru Togano, Katsuji Teruya, Kenichiro Takahashi, Sho Miyamoto, Yuichiro Hirata, Takayuki Kanno, Tomoya Saito, Harutaka Katano, Tadaki Suzuki, Norio Ohmagari

Objective: The duration of viral shedding and criteria for de-isolation in the hospital among immunocompromised patients with coronavirus disease 2019 (COVID-19) remain unclear. This study aimed to evaluate viral shedding duration in immunocompromised patients infected with the Omicron variant of severe acute respiratory syndrome coronavirus 2.

Methods: A prospective cohort study was performed at 2 tertiary medical centers in Japan during the Omicron epidemic waves from July 2022 to January 2023. Nasopharyngeal swabs were serially collected from immunocompromised patients with COVID-19, including those with hematological malignancies, solid tumors, autoimmune diseases, and human immunodeficiency virus infection. Patients were classified as severely or moderately immunocompromised according to the Japanese national guidelines for tixagevimab-cilgavimab. The relationship between patient characteristics, immune status, duration of viral RNA presence, and infectious virus shedding were assessed using Mann-Whitney U and Fisher's exact tests.

Results: Among 41 patients (163 samples), 9 (47 samples) were severely and 32 (116 samples) were moderately immunocompromised. In the severely and moderately immunocompromised groups, 87.2% and 75.0% of the samples were viral RNA-positive, while 36.2% and 35.3% were culture-positive, respectively. Five culture-positive samples after day 20 were from 2 severely immunocompromised patients on B cell depletion therapy. No culture-positive samples were found for the moderately immunocompromised patients after day 10.

Conclusions: Long-term viral shedding should be closely monitored in severely immunocompromised patients with COVID-19.

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引用次数: 0
Prosthetic Double Valve Endocarditis Caused by Streptococcus pneumoniae Due to Overwhelming Post-Splenectomy Infection (OPSI) in a Pre-Vaccine Licensure Era: A Case Report.
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-01-20 DOI: 10.1016/j.jiac.2025.102632
Taichi Ito, Kyoko Yokota, Shu Yamamoto

Overwhelming post-splenectomy infection (OPSI) is a severe and potentially life-threatening condition that can occur in patients undergoing splenectomy. We report a case of a patient who had a splenectomy approximately 30 years ago during prosthetic valve insertion for infective endocarditis (IE). The patient later developed prosthetic valve endocarditis caused by Streptococcus pneumoniae associated with OPSI. Although IE due to Streptococcus pneumoniae is rare, the presence of a prosthetic valve may increase the risk of IE in splenectomized patients. This case highlights the need for increased vigilance in managing these patients. Additionally, this case represents a missed opportunity for vaccination, as the splenectomy was performed before the approval of the 23-valent pneumococcal polysaccharide vaccine in Japan. This underscores the importance of establishing a system to ensure appropriate vaccine catch-up and to provide educational opportunities for patients who have undergone splenectomy.

{"title":"Prosthetic Double Valve Endocarditis Caused by Streptococcus pneumoniae Due to Overwhelming Post-Splenectomy Infection (OPSI) in a Pre-Vaccine Licensure Era: A Case Report.","authors":"Taichi Ito, Kyoko Yokota, Shu Yamamoto","doi":"10.1016/j.jiac.2025.102632","DOIUrl":"https://doi.org/10.1016/j.jiac.2025.102632","url":null,"abstract":"<p><p>Overwhelming post-splenectomy infection (OPSI) is a severe and potentially life-threatening condition that can occur in patients undergoing splenectomy. We report a case of a patient who had a splenectomy approximately 30 years ago during prosthetic valve insertion for infective endocarditis (IE). The patient later developed prosthetic valve endocarditis caused by Streptococcus pneumoniae associated with OPSI. Although IE due to Streptococcus pneumoniae is rare, the presence of a prosthetic valve may increase the risk of IE in splenectomized patients. This case highlights the need for increased vigilance in managing these patients. Additionally, this case represents a missed opportunity for vaccination, as the splenectomy was performed before the approval of the 23-valent pneumococcal polysaccharide vaccine in Japan. This underscores the importance of establishing a system to ensure appropriate vaccine catch-up and to provide educational opportunities for patients who have undergone splenectomy.</p>","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":" ","pages":"102632"},"PeriodicalIF":1.9,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143023764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A case of Staphylococcus saprophyticus bacteremia caused by obstructive pyelonephritis.
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-01-20 DOI: 10.1016/j.jiac.2025.102629
Kyoko Yoshida, Naoki Okawa, Tsuyama Nobuaki, Yoshihito Otsuka, Naoto Hosokawa

Herein, we present the case of a 64-year-old woman diagnosed with left calculous pyelonephritis. Gram-positive cocci in clusters were isolated from two sets of her blood culture. These cocci were later identified as Staphylococcus saprophyticus. Although S. saprophyticus is a common causative pathogen of urinary tract infection (UTI) among young women, coagulase-negative staphylococci including S. saprophyticus isolated from UTI patients' blood samples were often considered a result of contamination because of their rareness. Considering the high percentage of methicillin-resistant strains of S. saprophyticus, accurate strain identification and antimicrobial susceptibility testing are necessary to detect true bacteremia and its appropriate treatment.

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引用次数: 0
Re-evaluation of Blood Culture Contamination Rates: Discordance Between Clinical and Laboratory Assessment. 血液培养污染率的再评估:临床与实验室评估的不一致。
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-01-19 DOI: 10.1016/j.jiac.2025.102628
Hiroshi Hamada, Hiroshi Morioka, Masaki Okazaki, Atsushi Hashizume, Kohei Kanda, Keisuke Oka, Mitsutaka Iguchi, Tetsuya Yagi
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引用次数: 0
Bacterial enteritis caused by Salmonella Kedougou after returning from Thailand: A case report. 泰国归国后可杜沟沙门氏菌引起细菌性肠炎1例。
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-01-17 DOI: 10.1016/j.jiac.2025.102625
Nobumasa Okumura, Rika Yamamoto, Nana Akazawa-Kai, Kaori Tsuge, Misako Ohkusu, Naruhiko Ishiwada, Naoya Itoh

Non-typhoid Salmonella (NTS) includes many serotypes that differ in host, geographic distribution, and virulence. We report the case of a 64-year-old man who developed enteritis caused by Salmonella Kedougou without bacteremia after returning from Thailand. The patient stayed in Chiang Mai, Thailand, for 10 days to play golf and was hospitalized with fever, chills, watery diarrhea, and vomiting on the day the patient returned to Japan. The patient was treated with intravenous azithromycin followed by ceftriaxone for 6 days. NTS was detected in the patient's stool culture, and additional strain analyses were performed. Polymerase chain reaction for the O-antigen and sequence analysis of fliC and fliB genes determined the serotype of the strain to be O13: i: l,w. The strain was assigned to sequence type 1543 using multilocus sequence typing. These results confirmed that the strain was S. Kedougou. Considering the incubation period of salmonellosis, the patient was most likely infected with S. Kedougou in Thailand, which is consistent with the epidemiological information that S. Kedougou is frequently detected in northern Thailand. The identification of NTS serovars may not affect clinical management; however, we believe that it is important to accumulate epidemiological information to understand the interactions between the environment, animals, and humans.

非伤寒沙门氏菌(NTS)包括许多血清型,其宿主、地理分布和毒力不同。我们报告一例64岁男子从泰国返回后无菌血症发生由克杜古沙门氏菌引起的肠炎。该患者为打高尔夫球在泰国清迈停留了10天,并在返回日本当天因发烧、发冷、水样腹泻和呕吐而住院。患者静脉滴注阿奇霉素,随后加用头孢曲松治疗6 d。在患者的粪便培养中检测到NTS,并进行了额外的菌株分析。o抗原聚合酶链反应及fliC和fliB基因序列分析确定菌株血清型为O13: i: 1,w。通过多位点序列分型鉴定菌株为1543型。这些结果证实菌株是S. Kedougou。考虑到沙门氏菌病的潜伏期,该患者极有可能在泰国感染了S. Kedougou,这与泰国北部经常发现S. Kedougou的流行病学信息相一致。NTS血清型的鉴定可能不会影响临床管理;然而,我们认为积累流行病学信息对于了解环境、动物和人类之间的相互作用是重要的。
{"title":"Bacterial enteritis caused by Salmonella Kedougou after returning from Thailand: A case report.","authors":"Nobumasa Okumura, Rika Yamamoto, Nana Akazawa-Kai, Kaori Tsuge, Misako Ohkusu, Naruhiko Ishiwada, Naoya Itoh","doi":"10.1016/j.jiac.2025.102625","DOIUrl":"https://doi.org/10.1016/j.jiac.2025.102625","url":null,"abstract":"<p><p>Non-typhoid Salmonella (NTS) includes many serotypes that differ in host, geographic distribution, and virulence. We report the case of a 64-year-old man who developed enteritis caused by Salmonella Kedougou without bacteremia after returning from Thailand. The patient stayed in Chiang Mai, Thailand, for 10 days to play golf and was hospitalized with fever, chills, watery diarrhea, and vomiting on the day the patient returned to Japan. The patient was treated with intravenous azithromycin followed by ceftriaxone for 6 days. NTS was detected in the patient's stool culture, and additional strain analyses were performed. Polymerase chain reaction for the O-antigen and sequence analysis of fliC and fliB genes determined the serotype of the strain to be O13: i: l,w. The strain was assigned to sequence type 1543 using multilocus sequence typing. These results confirmed that the strain was S. Kedougou. Considering the incubation period of salmonellosis, the patient was most likely infected with S. Kedougou in Thailand, which is consistent with the epidemiological information that S. Kedougou is frequently detected in northern Thailand. The identification of NTS serovars may not affect clinical management; however, we believe that it is important to accumulate epidemiological information to understand the interactions between the environment, animals, and humans.</p>","PeriodicalId":16103,"journal":{"name":"Journal of Infection and Chemotherapy","volume":" ","pages":"102625"},"PeriodicalIF":1.9,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143006726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The incidence and risk factor for febrile urinary tract infection after robot-assisted laparoscopic radical cystectomy in bladder cancer patients. 膀胱癌机器人辅助腹腔镜根治性膀胱切除术后发热性尿路感染的发生率及危险因素分析。
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-01-15 DOI: 10.1016/j.jiac.2025.102624
Yoshiki Hiyama, Tetsuya Shindo, Atsushi Takahashi, Fumimasa Fukuta, Takeshi Maehana, Kimihito Tachikawa, Kohei Hashimoto, Ko Kobayashi, Toshiaki Tanaka, Satoshi Takahashi, Naoya Masumori

Introduction: Febrile urinary tract infections are major complications of radical cystectomy; however, their characteristics after robot-assisted radical cystectomy remain unclear. Thus, we investigated the rate, severity, pathogens, and risk factors of febrile urinary tract infections after robot-assisted radical cystectomy.

Patients and methods: Patients who underwent robot-assisted radical cystectomy at three institutions between April 2018 and March 2022 were retrospectively analyzed. The febrile urinary tract infections occurring within 90 days of surgery were evaluated.

Results: Overall, 191 patients were included. Of the 157 patients with ileal urinary diversions, 138 and 19 received ileal conduit and ileal neobladder, respectively; 42 febrile urinary tract infections were observed in 36 patients (22.9%). Of the 32 patients who underwent cutaneous ureterostomy, four patients had febrile urinary tract infections (12.5%). The incidence of postoperative febrile urinary tract infections was significantly higher in patients with ileal neobladder (52.9%) than in those with an ileal conduit (18.8%) (p < 0.05, log-rank test). Gram-positive strains were the dominant pathogen (60.0%), followed by gram-negative strains (37.1%) and fungi (2.9%). The blood culture was positive in 28.6% for febrile urinary tract infections. The primarily isolated strains were Enterococcus faecalis, Staphylococcus aureus, and Staphylococcus epidermidis, Escherichia coli and Pseudomonas aeruginosa. Female was the only risk factor for febrile urinary tract infections in those with an ileal conduit.

Conclusions: Gram-positive strains account for 60% of pathogens causing febrile urinary tract infections after robot-assisted radical cystectomy, that may cause severe complications, rendering management of febrile urinary tract infections paramount.

导读:发热性尿路感染是根治性膀胱切除术的主要并发症;然而,机器人辅助根治性膀胱切除术后的特征尚不清楚。因此,我们调查了机器人辅助根治性膀胱切除术后发热性尿路感染的发生率、严重程度、病原体和危险因素。患者和方法:回顾性分析2018年4月至2022年3月期间在三家机构接受机器人辅助根治性膀胱切除术的患者。观察术后90天内发热性尿路感染的发生情况。结果:共纳入191例患者。157例回肠尿改道患者中,138例接受回肠导管,19例接受回肠新膀胱;发热性尿路感染36例(22.9%),42例。32例行皮肤输尿管造口术的患者中,4例有发热性尿路感染(12.5%)。回肠新生膀胱组术后发热性尿路感染发生率(52.9%)显著高于回肠导管组(18.8%)(p < 0.05, log-rank检验)。病原菌以革兰氏阳性菌为主(60.0%),其次为革兰氏阴性菌(37.1%)和真菌(2.9%)。发热性尿路感染血培养阳性率为28.6%。主要分离菌株为粪肠球菌、金黄色葡萄球菌、表皮葡萄球菌、大肠杆菌和铜绿假单胞菌。女性是回肠导管患者发热性尿路感染的唯一危险因素。结论:革兰氏阳性菌株占机器人辅助根治性膀胱切除术后引起发热性尿路感染的60%,可能导致严重的并发症,因此对发热性尿路感染的处理至关重要。
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引用次数: 0
FilmArray® Effectively Detects All Clades of F41 but Encounters Challenges with Other Adenovirus Species. FilmArray®有效检测F41的所有分支,但遇到其他腺病毒物种的挑战。
IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES Pub Date : 2025-01-14 DOI: 10.1016/j.jiac.2025.102626
Shun Ito, Chika Takano, Sheikh Ariful Hoque, Yuko Shimizu-Onda, Shoko Okitsu, Satoshi Komoto, Satoshi Hayakawa, Shihoko Komine-Aizawa, Pattara Khamrin, Nozomu Hanaoka, Hiroshi Ushijima

The BioFire FilmArray® Gastrointestinal (GI) Panel, a widely used diagnostic tool, is designed to detect the genetic material of 22 common pathogens responsible for gastroenteritis, including viruses, bacteria, and parasites. It can detect human adenovirus (HAdV) species F, particularly serotypes F40 and F41, which are the major causes of diarrhea and mortality in children. However, its potential shortcomings in detecting other HAdV species limit its effectiveness in broader HAdV detection in clinical settings and outbreak investigations. The aim of this study was to evaluate the ability of the GI Panel to detect three clades of HAdV-F41 and other HAdV species (viz., A31, B3, C1, C2, C5, C2/6, and D56) in Japan. Eighteen stool samples were analyzed, five of which contained HAdV-F41, and 13 contained other HAdV species, as confirmed via PCR and sequencing. Although the GI Panel reliably detected all clades of HAdV-F41, it failed to detect any other species, highlighting its limited diagnostic utility beyond F40/41 serotypes. Considering the high false-negative rate for non-F40/41 species, integrating complementary diagnostic methods such as PCR is crucial for comprehensive HAdV detection. These findings underscore the limitations of the GI Panel in detecting non-F40/41 species, such as HAdV-C (commonly associated with pediatric gastroenteritis) and other species that are important in immunocompromised patients. Complementary diagnostic methods, such as PCR or immunochromatographic assays, are essential to ensure accurate HAdV detection, especially in vulnerable populations.

BioFire FilmArray®胃肠道(GI) Panel是一种广泛使用的诊断工具,用于检测22种导致胃肠炎的常见病原体的遗传物质,包括病毒、细菌和寄生虫。它可以检测人类腺病毒(hav) F种,特别是血清型F40和F41,这是儿童腹泻和死亡的主要原因。然而,它在检测其他hav物种方面的潜在缺陷限制了它在临床环境和疫情调查中更广泛检测hav的有效性。本研究的目的是评估GI Panel在日本检测hav - f41三个分支和其他hav物种(即A31、B3、C1、C2、C5、C2/6和D56)的能力。分析了18份粪便样本,经PCR和测序证实,其中5份含有hav - f41, 13份含有其他hav物种。虽然GI Panel可靠地检测到hav - f41的所有分支,但它未能检测到任何其他物种,这突出了其在F40/41血清型之外的有限诊断效用。考虑到非f40 /41种的高假阴性率,整合PCR等辅助诊断方法对于全面检测hav至关重要。这些发现强调了GI小组在检测非f40 /41菌种方面的局限性,例如HAdV-C(通常与儿童胃肠炎相关)和其他在免疫功能低下患者中很重要的菌种。补充诊断方法,如聚合酶链反应或免疫层析分析,对于确保准确检测hav至关重要,特别是在易感人群中。
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引用次数: 0
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Journal of Infection and Chemotherapy
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