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Cytokine and Endothelial Activation Patterns Related to Severe and Non-Severe Respiratory Viral Infections 与严重和非严重呼吸道病毒感染相关的细胞因子和内皮细胞激活模式。
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-31 DOI: 10.1002/jmv.70784
Roberto Ferrarese, Sara Boutahar, Angelo Paolo Genoni, Gabriele Arcari, Gaia Zambon, Maria Dolci, Federica Perego, Sara D'alessandro, Serena Delbue, Nicasio Mancini, Lucia Signorini, Federica Novazzi

Respiratory viral infections (RVIs) are a major cause of global morbidity and mortality. Severe cases are driven by dysregulated inflammation, impaired interferon (IFN) responses, and thromboinflammation, yet the mechanisms underlying endothelial dysfunction remain poorly defined. We collected 234 leftover material samples from hospitalized patients with PCR-confirmed RVIs. Patients were stratified by viral etiology, differential involvement of the respiratory tract, age and possible co-infections. Cytokines (IL-6, IL-8, IL-1β, TNF-α), IFNs (α/β/γ), and endothelial markers (ICAM-1, VCAM-1) were quantified using microfluidic immunoassays. Routine coagulation parameters were measured in a subset of patients. Compared with controls, RVI patients exhibited significantly elevated systemic cytokines (p < 0.001). IL-6 and IL-8 were higher in patients with lower respiratory tract involvement, particularly in influenza cases. Elderly patients displayed reduced IFN-α/β responses but increased proinflammatory CRP levels. Infants and children had higher ICAM-1 but lower CRP levels. Patients with viral–bacterial co-infections showed amplified IFN-γ/IL-1β/ICAM-1 response. Older adults demonstrated prolonged prothrombin times and reduced fibrinogen, indicating coagulopathy. Severe RVIs are characterized by a triad of impaired antiviral IFN responses, hyperinflammation, and endothelial activation, culminating in thromboinflammation. Age, viral type and co-infections critically shape host responses, underscoring the need for biomarker-guided, personalized therapies.

呼吸道病毒感染(RVIs)是全球发病率和死亡率的主要原因。严重的病例由炎症失调、干扰素(IFN)反应受损和血栓炎症驱动,但内皮功能障碍的机制仍不明确。我们从pcr确诊的RVIs住院患者中收集了234份剩余材料样本。根据病毒病因、呼吸道的不同受累程度、年龄和可能的合并感染对患者进行分层。细胞因子(IL-6、IL-8、IL-1β、TNF-α)、IFNs (α/β/γ)和内皮标志物(ICAM-1、VCAM-1)采用微流控免疫分析法进行定量。在一部分患者中测量常规凝血参数。与对照组相比,RVI患者表现出明显升高的全身细胞因子(p
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引用次数: 0
Arrival of Oropouche Virus in a Nonendemic Area in Northeastern Brazil, 2024 2024年巴西东北部非流行地区出现欧罗波切病毒。
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-29 DOI: 10.1002/jmv.70780
Jean P. M. Nascimento, Thiago P. G. Araújo, Mykaella A. Araújo, Mateus M. G. Arruda, Vitória P. Simplicio, Emelly B. Calheiros, Aline C. Pereira e Silva, Laura M. N. Silva, Marcus R. Santos, Magliones C. Lima, Hazerral O. Santos, Ênio J. Bassi, Alessandra A. Borges, Anderson B. Leite, Abelardo Silva-Júnior

Orthobunyavirus oropoucheense (OROV) causes Oropouche fever, which exhibits symptoms similar to those of other arboviral diseases. Although it has historically been restricted to the Amazon region, the virus has recently spread to other areas of Brazil. Alagoas state, with low socioeconomic conditions and limited health coverage, has seen an increase in febrile cases without confirmed molecular diagnoses of circulating arboviruses. By September 6, 2024, 1316 samples negative for Dengue, Zika, and Chikungunya were tested for OROV and Mayaro virus using RT-qPCR, yielding 115 (8.74%) positive results for OROV. Among these, 14 (22.22%) viral isolates were obtained in Vero cells and confirmed by RT-qPCR and immunofluorescence assay (IFA). The study generated 37 new near-complete genomic sequences corresponding to the newly characterized OROV lineage and examined selection pressures on the M gene, identifying sites under purifying selection. We identified amino acid variations in the Gc glycoprotein structure at positions 507, 552, 738, and 795, which may influence host-cell interactions. This work is the first to report OROV in Alagoas, emphasizing the need for improved monitoring and control measures to mitigate public health impacts.

正布尼亚病毒oropoucheense (OROV)引起Oropouche热,其症状与其他虫媒病毒性疾病相似。虽然这种病毒历来仅限于亚马逊地区,但最近已蔓延到巴西的其他地区。阿拉戈斯州的社会经济条件较低,健康覆盖率有限,在没有确诊的流行虫媒病毒分子诊断的情况下,出现了发热病例的增加。截至2024年9月6日,利用RT-qPCR对1316份登革热、寨卡和基孔肯雅热阴性样本进行OROV和Mayaro病毒检测,获得115份(8.74%)OROV阳性结果。其中,在Vero细胞中分离到14株(22.22%)病毒,经RT-qPCR和免疫荧光法(IFA)证实。该研究生成了37个新的接近完整的基因组序列,与新特征的OROV谱系相对应,并检查了M基因的选择压力,确定了纯化选择下的位点。我们发现了Gc糖蛋白结构中507、552、738和795位置的氨基酸变化,这可能影响宿主-细胞相互作用。这项工作是首次在阿拉戈斯报告OROV,强调有必要改进监测和控制措施,以减轻对公共卫生的影响。
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引用次数: 0
Unraveling Cytomegalovirus Drug Resistance in Transplant Patients by Targeting Deep Sequencing 靶向深度测序揭示移植患者巨细胞病毒耐药性
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-29 DOI: 10.1002/jmv.70768
Salvador Alemán, Juan Camacho, Vanessa Recio, Estrella Ruiz, Pilar Zamarrón, Jorge Anel, Montserrat Enjuto, David Tarragó

Drug-resistant cytomegalovirus (CMV) poses a major clinical challenge in transplant recipients, leading to treatment failure and increased morbidity. This study applied a next-generation sequencing (NGS) approach to identify antiviral resistance mutations (ARMs) in 71 samples from 68 CMV-positive patients who had undergone hematopoietic stem cell transplantation (HSCT) or solid organ transplantation (SOT) between 2018 and 2024. A custom nested-PCR protocol targeting six CMV genes (UL27, UL51, UL54, UL56, UL89, and UL97) was developed for enrichment prior to NGS. ARMs were detected in 23% of patients without clinical suspicion of resistance and in 62% of those with suspected resistance, most frequently affecting UL97. The most common UL97 mutations were A594V (24.4%), C603W (20.0%), and L595S (15.6%), while D301N (50%) predominated in UL54. Mutations associated with foscarnet and maribavir resistance were found in five and eight patients, respectively. NGS identified ARMs in 29 patients not detected by Sanger sequencing (p < 0.00001), while no additional ARMs were identified by Sanger alone. Importantly, these minority variants, revealed by NGS, are clinically relevant, as they may expand under antiviral pressure and contribute to virological failure. ARM presence was not significantly associated with viral load or mortality, though recurrent CMV reactivation showed a trend toward association (p = 0.0504). Survival was significantly lower in HSCT versus SOT recipients (p = 0.027). These findings support the routine clinical use of NGS for CMV resistance testing, particularly in complex cases and in the context of expanding antiviral options such as maribavir and letermovir.

耐药巨细胞病毒(CMV)对移植受者构成了重大的临床挑战,导致治疗失败和发病率增加。该研究采用下一代测序(NGS)方法,在2018年至2024年期间接受造血干细胞移植(HSCT)或实体器官移植(SOT)的68名cmv阳性患者的71份样本中鉴定了抗病毒抗性突变(ARMs)。针对6个CMV基因(UL27, UL51, UL54, UL56, UL89和UL97)开发了定制的巢式pcr协议,用于在NGS之前进行富集。23%的无临床耐药怀疑的患者和62%的疑似耐药患者检测到ARMs,最常影响UL97。UL97最常见的突变是A594V(24.4%)、C603W(20.0%)和L595S(15.6%),而D301N(50%)在UL54中占主导地位。分别在5例和8例患者中发现与氟膦酸钠和马里巴韦耐药相关的突变。在Sanger测序未检测到的29例患者中,NGS发现了ARMs (p
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引用次数: 0
Durability of Long-Acting Cabotegravir + Rilpivirine in Virologically Suppressed Adults Living With HIV: A Multicenter Observational Cohort in Tuscany (LAHIV) 长效卡波特韦+利匹韦林在病毒学抑制的成人HIV感染者中的持久性:托斯卡纳(LAHIV)的多中心观察队列。
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-29 DOI: 10.1002/jmv.70779
Filippo Lagi, Giuseppe Formica, Massimiliano Fabbiani, Barbara Rossetti, Matteo Piccica, Alessio Pampaloni, Beatrice Menichini, Silvia Costarelli, Claudia Bianco, Giovanni Sarteschi, Michele De Gennaro, Emanuela Francalanci, Martina Turco, Giuseppe Gasparro, Marco Fognani, Paola Corsi, Marco Pozzi, Gaetana Sterrantino, Mario Tumbarello, Daniela Messeri, Cecilia Costa, Beatrice Anna Adriani, Cesira Nencioni, Danilo Tacconi, Spartaco Sani, Antonella Vincenti, Luigi Pisano, Alessandro Bartoloni

To evaluate the durability of long-acting cabotegravir (CAB) plus rilpivirine (RPV), available in Italy since June 2022, for maintaining HIV-1 virological suppression. This multicentric observational study included 191 virologically suppressed adults (HIV-RNA < 50 copies/mL) from 11 centers in Tuscany, followed from first CAB + RPV injection until discontinuation, death, or last visit. Discontinuation was defined as regimen switch or two consecutive missed doses, virological failure (VF) as two consecutive HIV-RNA > 50 copies/mL or a single > 1000 copies/mL. Kaplan–Meier survival analysis assessed discontinuation rates. Follow-up was 209.5 person-years with a median of 1 year (IQR 0.5–1.5). Median age was 51 years (IQR 43–58); 81.7% were male; median ART duration was 13.8 years (IQR 8.7–20.2). Eighteen participants (9.2%) discontinued due to adverse events (3.7%), VF (2.6%), personal choice (2.1%), medical decision (0.5%), or loss to follow-up (0.5%). Overall discontinuation was 8.5/100 person-years (95% CI: 5.4–13.6). VF incidence was 2.3/100 person-years (95% CI 0.9–5.7). All VFs, occurred within 28 weeks, except one at Week 72 with resistance mutations. Discontinuation rates were slightly higher than clinical trials but consistent with real-world data. The VF incidence was slightly higher than reported in prior reports, highlighting the need for real-life clinical monitoring.

评估自2022年6月起在意大利上市的长效卡博特韦(CAB)加利匹韦林(RPV)维持HIV-1病毒学抑制的持久性。这项多中心观察性研究包括191名病毒学抑制的成年人(HIV-RNA 50拷贝/mL或单个bb0 1000拷贝/mL)。Kaplan-Meier生存分析评估停药率。随访209.5人年,中位数为1年(IQR 0.5-1.5)。中位年龄51岁(IQR 43-58);81.7%为男性;抗逆转录病毒治疗的中位持续时间为13.8年(IQR 8.7-20.2)。18名参与者(9.2%)因不良事件(3.7%)、VF(2.6%)、个人选择(2.1%)、医疗决定(0.5%)或失去随访(0.5%)而停止治疗。总停药率为8.5/100人年(95% CI: 5.4-13.6)。VF发病率为2.3/100人年(95% CI 0.9-5.7)。所有VFs均在28周内发生,除了一例在72周发生耐药突变。停药率略高于临床试验,但与实际数据一致。VF发病率略高于先前报道,突出了现实临床监测的必要性。
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引用次数: 0
ETS Translocation Variant 5 Negatively Modulates Innate Immunity to Facilitate Epstein-Barr Virus Reactivation ETS易位变异体5负向调节先天免疫促进eb病毒再激活
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-29 DOI: 10.1002/jmv.70783
Xuefei Liao, Mengdi Chen, Li Yang, Mingjuan Jiang, Yujie Xin, Huirong Yan, Qingshuang Qin, Jianhong Lu

Epstein-Barr virus (EBV) is a member of the gamma-herpesvirus subfamily that is prevalent in the human population. There are two phases of EBV infection: latent infection and lytic infection. During lytic reactivation, host innate immune responses are activated to restrict EBV replication. Here, we identified ETS translocation variant 5 (ETV5) as a negative regulator of innate immune responses to facilitate EBV reactivation. ETV5 expression was upregulated by the EBNA1/BRD7 axis, which had been previously described by us, during EBV latent infection. When EBV was induced into lytic replication, the expression of ETV5 was further increased, and ETV5 overexpression dramatically enhanced the lytic replication of EBV. Mechanistically, upon EBV reactivation, the overexpression of ETV5 suppressed the activation of TANK-binding kinase 1 and interferon regulatory factor 3 (IRF3), as well as the transcription of interferon beta (IFNB1) gene and interferon-stimulated genes (ISGs). The effect of ETV5 knockdown could be reversed by an inhibitor of innate immunity pathway. These findings position ETV5 as a critical accelerator of EBV reactivation through immune evasion, revealing new therapeutic targets for managing EBV-associated diseases.

爱泼斯坦-巴尔病毒(EBV)是γ -疱疹病毒亚家族的一员,在人群中普遍存在。EBV感染有两个阶段:潜伏感染和溶解感染。在裂解再激活过程中,宿主先天免疫反应被激活以限制EBV的复制。在这里,我们确定了ETS易位变体5 (ETV5)作为先天免疫反应的负调节因子,促进EBV的再激活。在EBV潜伏感染期间,ETV5的表达被EBNA1/BRD7轴上调,这是我们之前描述的。当诱导EBV裂解复制时,ETV5的表达进一步增加,ETV5过表达显著增强EBV的裂解复制。在机制上,EBV再激活后,ETV5的过表达抑制了tank结合激酶1和干扰素调节因子3 (IRF3)的激活,以及干扰素β (IFNB1)基因和干扰素刺激基因(ISGs)的转录。先天免疫通路抑制剂可以逆转ETV5基因敲低的作用。这些发现将ETV5定位为EBV通过免疫逃避再激活的关键加速器,揭示了管理EBV相关疾病的新治疗靶点。
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引用次数: 0
SARS-CoV-2 Infection Is Associated With an Increased Risk of Hospital-Treated Infectious Mononucleosis due to EBV: National Register-Based Cohort Study SARS-CoV-2感染与EBV引起的医院治疗感染性单核细胞增多症风险增加相关:国家基于登记的队列研究
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-29 DOI: 10.1002/jmv.70787
Snieguole Vingeliene, Huiqi Li, Helena Backman, Ruzan Udumyan, Johan Jendeberg, Gunlög Rasmussen, Martin Sundqvist, Marleen A. H. Lentjes, Katja Fall, Ayako Hiyoshi, Fredrik Nyberg, Scott Montgomery

There is evidence that persistent dysregulation of the immune system caused by SARS-CoV-2 infection may increase susceptibility to other infections. Here, we assessed whether it is associated with subsequent diagnoses of infectious mononucleosis due to Epstein-Barr virus (EBV-IM). Residents of Sweden aged 3–100 years without a prior diagnosis of EBV-IM were followed between January 1, 2020, and November 30, 2022, comprising a total of 9 978 860 participants. Individuals were categorized into those without a COVID-19 diagnosis, those with a positive SARS-CoV-2 polymerase chain reaction (PCR) test only – less severe exposure, and those admitted to hospital with COVID-19 – more severe exposure. Cox regression was used to estimate hazard ratios (HR) with 95% confidence intervals (95% CI) for the association between the exposure, modeled as a time-varying covariate, and EBV-IM occurrence. EBV-IM rates per 100 000 person-years and 95% CIs were 4.6 (4.4–4.9) for individuals not diagnosed with COVID-19, 7.8 (6.9–8.9) for those with a positive SARS-CoV-2 test only, and 10.5 (6.2–17.6) for patients admitted to hospital with COVID-19. HR and 95% CI were 1.61 (1.39–1.88) for people with a positive PCR test only and 5.71 (3.33–9.79) for those admitted to hospital with COVID-19 compared with people without a COVID-19 diagnosis, after adjustment for birth year, sex, Swedish healthcare region, region of birth, and Charlson comorbidity index. SARS-CoV-2 infection was associated with a subsequent raised risk of EBV-IM, including among those with less severe acute infection, signaling immune perturbation and the possibility of further delayed sequelae linked with EBV-IM.

有证据表明,由SARS-CoV-2感染引起的免疫系统持续失调可能会增加对其他感染的易感性。在这里,我们评估了它是否与eb病毒(EBV-IM)引起的传染性单核细胞增多症的后续诊断相关。在2020年1月1日至2022年11月30日期间,对瑞典3-100岁未被诊断为EBV-IM的居民进行了随访,共包括9978860名参与者。这些人被分为没有COVID-19诊断的人、只有SARS-CoV-2聚合酶链反应(PCR)检测呈阳性的人(暴露程度较轻)和因COVID-19入院的人(暴露程度较重)。Cox回归用于估计暴露(建模为时变协变量)与EBV-IM发生之间的关联的95%置信区间(95% CI)的风险比(HR)。未诊断为COVID-19的个体每10万人年EBV-IM率和95% ci为4.6(4.4-4.9),仅SARS-CoV-2检测阳性的个体为7.8(6.9-8.9),住院的COVID-19患者为10.5(6.2-17.6)。在调整出生年份、性别、瑞典医疗保健地区、出生地区和Charlson合病指数后,仅PCR检测阳性的患者的HR和95% CI为1.61(1.39-1.88),入院的COVID-19患者与未诊断COVID-19的患者的HR和95% CI为5.71(3.33-9.79)。SARS-CoV-2感染与随后EBV-IM风险增加相关,包括在急性感染不太严重的人群中,这表明免疫紊乱以及与EBV-IM相关的进一步延迟后遗症的可能性。
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引用次数: 0
Dimeric Bisbenzimidazole DB2A(7) Protects Mice From Lethal Genital Herpes and Herpetic Skin Lesions 二聚体双苯并咪唑DB2A(7)保护小鼠免受致死性生殖器疱疹和疱疹性皮肤病变。
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-29 DOI: 10.1002/jmv.70758
Natalia A. Demidova, Regina R. Klimova, Albert F. Arutyunyan, Vasiliy S. Koval, Alexey A. Kostyukov, Vladimir A. Kuzmin, Elena A. Shubina, Ruslan A. Simonov, Alexei L. Zhuze, Alla A. Kushch

Herpes simplex virus type 1 (HSV-1) is among the most common pathogens in the human population. Primary infection and reactivation of the virus can cause serious diseases and death. The drug resistance to all approved anti-HSV agents poses a significant challenge, especially for immunocompromised patients. This study focuses on some details of the dimeric bisbenzimidazole DB2A(7) synthesis and its antiviral properties of against both HSV-1 sensitive and resistant acyclovir isolates. Optimization of the synthesis of DB2A(7) resulted in an increase in the total yield from 20% to 44%, reduction of labor intensity and removal of highly toxic and carcinogenic hydrazine. The DB2A(7) binding to thymus DNA was confirmed by a combination of physicochemical methods including calculation of the binding constant. DB2A(7) demonstrated the in vitro capacity to inhibit viral activity, both before and after cell infection, and effectively inactivated cell-free viruses. Gene expression analysis by RT-PCR revealed a significant reduction in the transcription of the gene encoding the immediate early ICP0 HSV-1 protein, suggesting a mechanism of action different from that of acyclovir. We first demonstrated the in vivo preventive effect of DB2A(7) towards lethal skin HSV-1 infection in mice as well as its capacity to protect animals from lethal genital herpes. The data obtained implied the potential of the synthesized DB2A(7) as a new antiviral agent against the lethal HSV-1 infection.

1型单纯疱疹病毒(HSV-1)是人类中最常见的病原体之一。病毒的初次感染和再激活可导致严重疾病和死亡。对所有已批准的抗hsv药物的耐药性构成了重大挑战,特别是对免疫功能低下的患者。本研究的重点是二聚体双苯并咪唑DB2A(7)的合成及其对HSV-1敏感和耐药的无环鸟苷分离株的抗病毒性能。优化DB2A(7)的合成工艺,使总产率从20%提高到44%,降低了劳动强度,脱除了剧毒致癌物联氨。DB2A(7)与胸腺DNA的结合通过计算结合常数等理化方法得到证实。DB2A(7)在细胞感染前和感染后均显示出体外抑制病毒活性的能力,并能有效灭活无细胞病毒。RT-PCR基因表达分析显示,直接早期ICP0 HSV-1蛋白编码基因转录显著减少,提示其作用机制与阿昔洛韦不同。我们首先证明了DB2A(7)对小鼠致死性皮肤HSV-1感染的体内预防作用,以及它保护动物免受致死性生殖器疱疹的能力。所得数据表明,合成的DB2A(7)有可能作为一种新的抗病毒药物对抗致死的HSV-1感染。
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引用次数: 0
Epstein-Barr Virus (EBV) and Autoimmune Diseases: Pathogenic Mechanisms and Therapeutic Insights eb病毒(EBV)与自身免疫性疾病:致病机制和治疗见解。
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-29 DOI: 10.1002/jmv.70785
Shipra Gupta, Vijayalakshmi Reddy, Lonika Lodha, M. A. Ashwini

Epstein-Barr virus (EBV), a ubiquitous human γ-herpesvirus infecting over 90% of the global population, has been increasingly implicated as a key environmental trigger in the development of various autoimmune diseases, including multiple sclerosis (MS), systemic lupus erythematosus (SLE), rheumatoid arthritis (RA). EBV latent proteins (e.g., EBNA1, EBNA2, LMP1) mimic host antigens and dysregulate B and T cell responses, promoting autoreactivity. Novel therapeutics, including small-molecule latency disruptors, EBV-specific T cell therapies, and advanced B-cell depletion strategies, have shown promise in addressing EBV-driven autoimmunity. Understanding its pathogenic mechanisms and therapeutic implications is critical for improving disease management. This review summarises EBV's roles in autoimmunity through mechanisms including molecular mimicry, B-cell transformation, and immune dysregulation. It also examines emerging antiviral and immune-modulating strategies targeting EBV infection and latency.

Epstein-Barr病毒(EBV)是一种普遍存在的人类γ-疱疹病毒,感染全球90%以上的人口,已越来越多地涉及各种自身免疫性疾病的发展,包括多发性硬化症(MS),系统性红斑狼疮(SLE),类风湿性关节炎(RA)的关键环境触发因素。EBV潜伏蛋白(如EBNA1, EBNA2, LMP1)模仿宿主抗原,失调B细胞和T细胞反应,促进自身反应。新的治疗方法,包括小分子潜伏期干扰物、ebv特异性T细胞疗法和先进的b细胞消耗策略,在解决ebv驱动的自身免疫方面显示出希望。了解其致病机制和治疗意义对改善疾病管理至关重要。本文综述了EBV通过分子模仿、b细胞转化和免疫失调等机制在自身免疫中的作用。它还研究了针对EBV感染和潜伏期的新兴抗病毒和免疫调节策略。
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引用次数: 0
Prevalence and Molecular Characteristics of Human Metapneumovirus Among Children in Shanghai, China, 2021–2025 中国上海2021-2025年儿童人偏肺病毒流行及分子特征
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-28 DOI: 10.1002/jmv.70782
Xunhua Zhu, Menghua Xu, Lijuan Lu, Ran Jia, Pengcheng Liu, Zihao Bao, Jin Xu

At the end of 2024, human metapneumovirus (HMPV) infections surged significantly in China, attracting widespread attention and concerns at home and abroad. This study aims to investigate the prevalent and molecular characteristics of the HMPV infection in children during 2021–2025 in Shanghai, China, including the latest epidemic prevailing in December 2024. The demographic information and the results of laboratory pathogen detection from July 2021 to May 2025 were collected and analyzed. The G gene of HMPV was amplified and sequenced using Sanger sequencing, followed by phylogenetic analysis to determine the genotypes. A total of 26 952 pediatric patients with acute respiratory tract infection (ARTI) were enrolled in this study. The overall positive rate of HMPV was 4.65% (1252/26952). The popularity mainly peaked in Winter and early Spring, with the highest detection rate in 1~3 years age group and with no statistically significant gender difference. Among 206 successfully sequenced G gene samples, four genotypes were identified: A2c (66.99%, 138/206, all of which were the A2c111nt-dup variant), B2 (24.76%, 51/206), A2b (7.77%, 16/206), and B1 (0.49%, 1/206). From 2021 to 2024, the A2c111nt-dup variant was dominant. However, a genotype shift to B2 occurred in December 2024, leading to a significant surge in HMPV infections that persisted into 2025. The dominant genotype of HMPV has changed from A2c111nt-dup to B2, causing the outbreak in Shanghai from December 2024 to April 2025. Sustained surveillance is essential for predicting and monitoring its prevalence.

2024年底,中国人偏肺病毒(HMPV)感染病例大幅增加,引起了国内外的广泛关注和担忧。本研究旨在调查2021-2025年上海市儿童HMPV感染流行情况及分子特征,包括2024年12月最新流行的一次。收集和分析2021年7月至2025年5月的人口统计信息和实验室病原体检测结果。扩增HMPV G基因,采用Sanger测序法对其进行测序,并进行系统发育分析,确定基因型。本研究共纳入26 952例急性呼吸道感染(ARTI)患儿。HMPV总阳性率为4.65%(1252/26952)。流行高峰主要在冬季和早春,检出率以1~3岁年龄组最高,性别差异无统计学意义。在206份成功测序的G基因样本中,共鉴定出A2c(66.99%, 138/206)、B2(24.76%, 51/206)、A2b(7.77%, 16/206)和B1(0.49%, 1/206) 4种基因型。从2021年到2024年,A2c111nt-dup变体占主导地位。然而,2024年12月发生了基因型向B2的转变,导致HMPV感染持续到2025年的显著激增。HMPV的优势基因型由a2c111nt - d变为B2,导致了2024年12月至2025年4月在上海暴发。持续监测对于预测和监测其流行情况至关重要。
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引用次数: 0
A Multicenter Clinical Evaluation of Polymerase Chain Reaction Coupled With Quantum Dot Fluorescence Analysis and Quantitative Real-Time Reverse Transcription Polymerase Chain Reaction in the Diagnosis of Pathogens in Patients With Suspected Respiratory Tract Infections 聚合酶链反应联合量子点荧光分析和实时定量逆转录聚合酶链反应在疑似呼吸道感染患者病原体诊断中的多中心临床评价
IF 4.6 3区 医学 Q1 VIROLOGY Pub Date : 2025-12-28 DOI: 10.1002/jmv.70759
Xinghan Huang, Haojie He, Wenjie Yang, Bangxing Lin, Junjie Lao, Guangzhi Du, Shenghai Wu, Yueming Chen, Xueyan Dong, Huiqiang Liang, Xianjun Wang, Liqian Wang

This multicenter clinical study evaluated 17 common pathogens in 1922 pharyngeal swab samples, comparing the diagnostic performance of polymerase chain reaction coupled with quantum dot fluorescence analysis (PCR-QDFA) with that of clinically routine quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR). The results were validated using Sanger sequencing as the gold standard. Our results showed that among the samples with single-pathogen infections (1037 cases, 53.95%), the three most frequently detected pathogen were influenza A virus (IAV) (296 cases, 15.40%), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (164 cases, 8.53%), and Mycoplasma pneumoniae (94 cases, 4.89%). Similarly, among the samples with co-infections of two or more pathogens (382 cases, 19.88%), the three most frequently detected pathogens were IAV (148 cases, 7.70%), SARS-CoV-2 (107 cases, 5.57%), and M. pneumoniae (67 cases, 3.49%). In the comprehensive evaluation of 17 respiratory pathogens, PCR-QDFA demonstrated comparable diagnostic performance to qRT-PCR, with an overall sensitivity of 99.78% (99.44%–99.92%) (vs. qRT-PCR: 99.82% [99.48%–99.94%]) and specificity of 99.94% (99.90%–99.96%) (vs. qRT-PCR: 99.95% [99.91%–99.97%]). PCR-QDFA offers significant operational advantages, including high-throughput capacity (96 samples per run) and lower cost.

本多中心临床研究评估了1922份咽拭子样本中17种常见病原体,比较了聚合酶链反应联合量子点荧光分析(PCR-QDFA)与临床常规定量实时反转录聚合酶链反应(qRT-PCR)的诊断性能。结果以Sanger测序为金标准进行验证。结果显示,在单病原体感染样本(1037例,53.95%)中,检出最多的3种病原体分别是甲型流感病毒(IAV)(296例,15.40%)、严重急性呼吸综合征冠状病毒(SARS-CoV-2)(164例,8.53%)和肺炎支原体(94例,4.89%)。在两种及两种以上病原体共感染的样本中(382例,19.88%),检出最多的3种病原体分别是IAV(148例,7.70%)、SARS-CoV-2(107例,5.57%)和肺炎支原体(67例,3.49%)。在对17种呼吸道病原体的综合评价中,PCR-QDFA的诊断性能与qRT-PCR相当,总灵敏度为99.78% (99.44% ~ 99.92%)(qRT-PCR为99.82%[99.48% ~ 99.94%]),特异性为99.94% (99.90% ~ 99.96%)(qRT-PCR为99.95%[99.91% ~ 99.97%])。PCR-QDFA具有显著的操作优势,包括高吞吐量(每次运行96个样品)和较低的成本。
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Journal of Medical Virology
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