Jean P. M. Nascimento, Thiago P. G. Araújo, Mykaella A. Araújo, Mateus M. G. Arruda, Vitória P. Simplicio, Emelly B. Calheiros, Aline C. Pereira e Silva, Laura M. N. Silva, Marcus R. Santos, Magliones C. Lima, Hazerral O. Santos, Ênio J. Bassi, Alessandra A. Borges, Anderson B. Leite, Abelardo Silva-Júnior
Orthobunyavirus oropoucheense (OROV) causes Oropouche fever, which exhibits symptoms similar to those of other arboviral diseases. Although it has historically been restricted to the Amazon region, the virus has recently spread to other areas of Brazil. Alagoas state, with low socioeconomic conditions and limited health coverage, has seen an increase in febrile cases without confirmed molecular diagnoses of circulating arboviruses. By September 6, 2024, 1316 samples negative for Dengue, Zika, and Chikungunya were tested for OROV and Mayaro virus using RT-qPCR, yielding 115 (8.74%) positive results for OROV. Among these, 14 (22.22%) viral isolates were obtained in Vero cells and confirmed by RT-qPCR and immunofluorescence assay (IFA). The study generated 37 new near-complete genomic sequences corresponding to the newly characterized OROV lineage and examined selection pressures on the M gene, identifying sites under purifying selection. We identified amino acid variations in the Gc glycoprotein structure at positions 507, 552, 738, and 795, which may influence host-cell interactions. This work is the first to report OROV in Alagoas, emphasizing the need for improved monitoring and control measures to mitigate public health impacts.
{"title":"Arrival of Oropouche Virus in a Nonendemic Area in Northeastern Brazil, 2024","authors":"Jean P. M. Nascimento, Thiago P. G. Araújo, Mykaella A. Araújo, Mateus M. G. Arruda, Vitória P. Simplicio, Emelly B. Calheiros, Aline C. Pereira e Silva, Laura M. N. Silva, Marcus R. Santos, Magliones C. Lima, Hazerral O. Santos, Ênio J. Bassi, Alessandra A. Borges, Anderson B. Leite, Abelardo Silva-Júnior","doi":"10.1002/jmv.70780","DOIUrl":"10.1002/jmv.70780","url":null,"abstract":"<p><i>Orthobunyavirus oropoucheense</i> (OROV) causes Oropouche fever, which exhibits symptoms similar to those of other arboviral diseases. Although it has historically been restricted to the Amazon region, the virus has recently spread to other areas of Brazil. Alagoas state, with low socioeconomic conditions and limited health coverage, has seen an increase in febrile cases without confirmed molecular diagnoses of circulating arboviruses. By September 6, 2024, 1316 samples negative for Dengue, Zika, and Chikungunya were tested for OROV and Mayaro virus using RT-qPCR, yielding 115 (8.74%) positive results for OROV. Among these, 14 (22.22%) viral isolates were obtained in Vero cells and confirmed by RT-qPCR and immunofluorescence assay (IFA). The study generated 37 new near-complete genomic sequences corresponding to the newly characterized OROV lineage and examined selection pressures on the M gene, identifying sites under purifying selection. We identified amino acid variations in the Gc glycoprotein structure at positions 507, 552, 738, and 795, which may influence host-cell interactions. This work is the first to report OROV in Alagoas, emphasizing the need for improved monitoring and control measures to mitigate public health impacts.</p>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"98 1","pages":""},"PeriodicalIF":4.6,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12746540/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145850304","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Salvador Alemán, Juan Camacho, Vanessa Recio, Estrella Ruiz, Pilar Zamarrón, Jorge Anel, Montserrat Enjuto, David Tarragó
Drug-resistant cytomegalovirus (CMV) poses a major clinical challenge in transplant recipients, leading to treatment failure and increased morbidity. This study applied a next-generation sequencing (NGS) approach to identify antiviral resistance mutations (ARMs) in 71 samples from 68 CMV-positive patients who had undergone hematopoietic stem cell transplantation (HSCT) or solid organ transplantation (SOT) between 2018 and 2024. A custom nested-PCR protocol targeting six CMV genes (UL27, UL51, UL54, UL56, UL89, and UL97) was developed for enrichment prior to NGS. ARMs were detected in 23% of patients without clinical suspicion of resistance and in 62% of those with suspected resistance, most frequently affecting UL97. The most common UL97 mutations were A594V (24.4%), C603W (20.0%), and L595S (15.6%), while D301N (50%) predominated in UL54. Mutations associated with foscarnet and maribavir resistance were found in five and eight patients, respectively. NGS identified ARMs in 29 patients not detected by Sanger sequencing (p < 0.00001), while no additional ARMs were identified by Sanger alone. Importantly, these minority variants, revealed by NGS, are clinically relevant, as they may expand under antiviral pressure and contribute to virological failure. ARM presence was not significantly associated with viral load or mortality, though recurrent CMV reactivation showed a trend toward association (p = 0.0504). Survival was significantly lower in HSCT versus SOT recipients (p = 0.027). These findings support the routine clinical use of NGS for CMV resistance testing, particularly in complex cases and in the context of expanding antiviral options such as maribavir and letermovir.
{"title":"Unraveling Cytomegalovirus Drug Resistance in Transplant Patients by Targeting Deep Sequencing","authors":"Salvador Alemán, Juan Camacho, Vanessa Recio, Estrella Ruiz, Pilar Zamarrón, Jorge Anel, Montserrat Enjuto, David Tarragó","doi":"10.1002/jmv.70768","DOIUrl":"10.1002/jmv.70768","url":null,"abstract":"<p>Drug-resistant cytomegalovirus (CMV) poses a major clinical challenge in transplant recipients, leading to treatment failure and increased morbidity. This study applied a next-generation sequencing (NGS) approach to identify antiviral resistance mutations (ARMs) in 71 samples from 68 CMV-positive patients who had undergone hematopoietic stem cell transplantation (HSCT) or solid organ transplantation (SOT) between 2018 and 2024. A custom nested-PCR protocol targeting six CMV genes (UL27, UL51, UL54, UL56, UL89, and UL97) was developed for enrichment prior to NGS. ARMs were detected in 23% of patients without clinical suspicion of resistance and in 62% of those with suspected resistance, most frequently affecting UL97. The most common UL97 mutations were A594V (24.4%), C603W (20.0%), and L595S (15.6%), while D301N (50%) predominated in UL54. Mutations associated with foscarnet and maribavir resistance were found in five and eight patients, respectively. NGS identified ARMs in 29 patients not detected by Sanger sequencing (<i>p</i> < 0.00001), while no additional ARMs were identified by Sanger alone. Importantly, these minority variants, revealed by NGS, are clinically relevant, as they may expand under antiviral pressure and contribute to virological failure. ARM presence was not significantly associated with viral load or mortality, though recurrent CMV reactivation showed a trend toward association (<i>p</i> = 0.0504). Survival was significantly lower in HSCT versus SOT recipients (<i>p</i> = 0.027). These findings support the routine clinical use of NGS for CMV resistance testing, particularly in complex cases and in the context of expanding antiviral options such as maribavir and letermovir.</p>","PeriodicalId":16354,"journal":{"name":"Journal of Medical Virology","volume":"98 1","pages":""},"PeriodicalIF":4.6,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12746535/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145850346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}