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Design and synthesis of triazole-based conjugates: Biological assessment and computational analysis 三唑基缀合物的设计与合成:生物学评价与计算分析
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-01 DOI: 10.1016/j.molstruc.2026.145550
Udit Kumar , Javeria , Kavya Singh , Preeti Jaiswal , Vishal Kumar Singh , Anuradha Singh
The escalating global health crisis of Antimicrobial Resistance (AMR) necessitates the rapid discovery of agents with novel structures and multi-targeted mechanisms of action. This study utilizes the Pharmacophore Hybridization Approach (PHA) to address this challenge by designing novel conjugates targeting essential bacterial pathways, specifically the Peptide Deformylase (PDF) enzyme. A virtual library of over 40 compounds, integrating the triazole linker with four established heterocyclic scaffolds (indoline-2,3‑dione, 4‑hydroxy-2H-chromen-2-one, 2-phenyl-1H-indole, and 2-hydroxybenzaldehyde), was generated. Eighteen lead molecules were rationally selected following in silico screening for drug-likeness (Lipinski’s Rule of Five) and preliminary ADMET profiles. These 18 leads were successfully synthesized via an optimized Copper(I)-catalyzed Azide-Alkyne Cycloaddition (CuAAC) reaction, utilizing a high-yield 1:1 THF/Water solvent system. The structures of all synthesized triazole derivatives were confirmed by a rigorous spectral assessment including 1H NMR, 13C-NMR and HRMS analyses. Molecular docking studies against Escherichia coli PDF (PDB ID: 1G2A) revealed potent binding affinities for several synthesized derivatives, significantly exceeding those of standard antibiotics. Structure-activity relationship (SAR) analysis highlighted the crucial role of specific substituents, particularly electron-withdrawing groups at R1 and a -NHCOCH3 group at R3, in enhancing binding affinity and predicted activity. Molecular dynamics simulations comparing a representative compound (Compound 3) to sulphamethoxazole indicated differences in dynamic behavior, with Compound 3 showing less conformational stability and higher flexibility, despite similar overall compactness. Experimental validation confirmed the successful synthesis of the target compounds and demonstrated promising antibacterial activity against a panel of Gram-positive and Gram-negative bacterial strains, correlating well with the predicted SAR. Cytotoxicity assessment in HEK293 cells showed dose-dependent, generally moderate effects. These integrated computational and experimental findings identify several triazole-based conjugates as promising lead candidates for further development in the fight against AMR.
抗菌素耐药性(AMR)的全球健康危机不断升级,需要快速发现具有新结构和多靶向作用机制的药物。本研究利用药效团杂交方法(PHA)来解决这一挑战,通过设计针对必要细菌途径的新型偶联物,特别是肽去甲酰基酶(PDF)酶。建立了一个包含40多个化合物的虚拟文库,将三唑连接剂与四种已建立的杂环支架(吲哚-2,3 -二酮,4 -羟基- 2h -铬-2- 1,2-苯基- 1h -吲哚和2-羟基苯甲醛)结合在一起。通过药物相似性的计算机筛选(Lipinski 's Rule of Five)和初步ADMET谱,合理选择18个铅分子。采用优化后的铜(I)催化叠氮-炔环加成反应(CuAAC),在高收率1:1的THF/水溶剂体系中成功合成了这18个引线。所有合成的三唑衍生物的结构均通过1H NMR, 13C-NMR和HRMS分析等严格的光谱评估得到证实。针对大肠杆菌PDF (PDB ID: 1G2A)的分子对接研究显示,合成的几种衍生物具有较强的结合亲和力,明显超过标准抗生素。结构-活性关系(SAR)分析强调了特定取代基,特别是R1上的吸电子基团和R3上的-NHCOCH3基团,在增强结合亲和力和预测活性方面的关键作用。分子动力学模拟比较了代表性化合物(化合物3)与磺胺甲恶唑在动力学行为上的差异,化合物3表现出较低的构象稳定性和较高的柔韧性,尽管整体致密性相似。实验验证证实了目标化合物的成功合成,并显示出对一组革兰氏阳性和革兰氏阴性菌株的有希望的抗菌活性,与预测的SAR有很好的相关性。HEK293细胞的细胞毒性评估显示剂量依赖性,一般为中等作用。这些综合计算和实验结果确定了几种基于三唑的偶联物,作为进一步开发抗AMR的有希望的主要候选物。
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引用次数: 0
From 2D to 3D: Condition-directed synthesis of topologically diverse Cd(II)-CPs for selective detection of tetracycline antibiotics 从2D到3D:条件定向合成拓扑多样的Cd(II)-CPs,用于选择性检测四环素类抗生素
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-01 DOI: 10.1016/j.molstruc.2026.145556
Juan Song , Liang Zhang , Jia-Mi Zhou , Yun-Long Zhou , Miao Wu , Bo-Feng Duan
Two novel cadmium(II) coordination polymers (CPs), [Cd(cpt)2(H2O)]ₙ (1), and [Cd(cpt)2]ₙ (2), are solvothermally synthesized. Structural analysis reveals that CP1 forms a 2D sql network, while CP2 adopts a 3D bey topology. Both water-stable CPs function as effective fluorescent sensors for tetracycline antibiotics (TCs), exhibiting significant quenching toward tetracycline (TC), chlortetracycline (CTC), and doxycycline (DOX). Specifically, for DOX, CP1 shows a KSV of 6.15 × 103 M-1 and an LOD of 4.31 μM; for CTC, CP2 exhibits a KSV of 6.02 × 103 M-1 and an LOD of 3.82 μM, with all detection limits falling within the low μM range. Furthermore, they are successfully applied to detect TCs in real milk samples. This work provides promising sensor materials and insights into structure-guided crystal engineering.
两种新型镉(II)配位聚合物[Cd(cpt)2(H2O)]和[Cd(cpt)2]采用溶剂热法合成。结构分析表明,CP1为二维sql网络,CP2为三维bey拓扑。两种水稳定CPs都是四环素类抗生素(TC)的有效荧光传感器,对四环素(TC)、氯四环素(CTC)和强力霉素(DOX)表现出显著的猝灭作用。具体来说,对于DOX, CP1的KSV为6.15 × 103 M-1, LOD为4.31 μM;对于CTC, CP2的KSV为6.02 × 103 M-1, LOD为3.82 μM,检测限均在低μM范围内。此外,它们还成功地应用于实际牛奶样品中的tc检测。这项工作为结构导向晶体工程提供了有前途的传感器材料和见解。
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引用次数: 0
Three dimensional framework of a semi-organic bis(4-aminopyridinium) hexafluorosilicate monohydrate single crystals with quantum chemical insights for nonlinear optical applications 半有机双(4-氨基吡啶)六氟硅酸一水合物单晶的三维框架及其非线性光学应用的量子化学见解
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-01 DOI: 10.1016/j.molstruc.2026.145554
R. Pradeep Kumar , RO.MU. Jauhar , V. Viswanathan , S. Priyadharshini , K. Anitha , V. Siva , R. Subramaniyan Raja
Single crystals of bis(4-aminopyridinium) hexafluorosilicate monohydrate was synthesised and characterized to explore their structural and optical features towards the applications in the fields of photonic and nonlinear optical (NLO) devices. Single crystals were effectively grown adopting slow solvent evaporation technique at room temperature. Subsequent analysis with single-crystal X-ray diffraction revealed the monoclinic crystal structure with C2/c space group. Here the asymmetric unit consists of two (SiF₆)2⁻halves, two 4-aminopyridinium cations, and a water molecule. Further the crystal structure of the title material is reported for the first time in the literature. The functional groups and intermolecular interactions within the lattice of the grown crystals were confirmed from the FTIR spectroscopy. The optical transmittance spectrum revealed that the grown crystal is transparent in the entire visible region with lower cutoff wavelength to be 286 nm indicating the materials suitability for optoelectronic applications. Thermal stability of the sample was found to be 99 °C as investigated through the TG-DTA Analysis. Further the stability around 99 °C confirms the presence of water molecule in the lattice. The Computational studies were performed under gaseous condition by employing the Gaussian 16 software and DFT computations through the B3LYP method. The nonlinear optical applications were carried out by the Z-scan characterization, including the nonlinear refractive index (n₂), two-photon absorption coefficient (β), and third-order nonlinear susceptibility (χ3). The cumulative results reveal that the title material is suitable for the photonic, laser, and nonlinear optical applications.
合成并表征了一水合物双(4-氨基吡啶)六氟硅酸盐单晶,探讨了其结构和光学特性,以期在光子和非线性光学器件(NLO)中的应用。采用慢速溶剂蒸发技术在室温下有效地生长单晶。随后的单晶x射线衍射分析显示单斜晶结构具有C2/c空间群。在这里,不对称单元由两个(SiF₆)2 -一半,两个4-氨基吡啶阳离子和一个水分子组成。此外,在文献中首次报道了标题材料的晶体结构。用红外光谱分析证实了生长晶体晶格内的官能团和分子间相互作用。透射光谱结果表明,该晶体在整个可见光区域是透明的,截止波长较低,为286 nm,表明该材料适合光电应用。通过TG-DTA分析,样品的热稳定性为99°C。此外,在99℃左右的稳定性证实了晶格中存在水分子。计算研究采用高斯16软件在气态条件下进行,采用B3LYP方法进行DFT计算。通过z扫描表征进行非线性光学应用,包括非线性折射率(n₂)、双光子吸收系数(β)和三阶非线性磁化率(χ3)。结果表明,该材料适用于光子、激光和非线性光学应用。
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引用次数: 0
Experimental and theoretical aspects of Hydroxyarylbenzimidazole (HABI) as an effective corrosion sensor and inhibitor in different corrosive environments 羟基苯并咪唑(HABI)作为一种有效的腐蚀传感器和缓蚀剂在不同腐蚀环境中的实验和理论方面
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-01 DOI: 10.1016/j.molstruc.2026.145538
Sonia Rani , Vijay Luxami , Shweta Goyal
Hydroxy-aryl benzimidazole (HABI) organic molecule has been synthesised and explored as a corrosion sensor and inhibitor for steel in different corrosive environments (acidic and basic). The sensing behaviour of the molecule was studied by UV-Vis and fluorescence spectroscopy, and corrosion inhibition efficiency was investigated through gravimetric, electrochemical measurements and theoretical studies. HABI fluorescence is turned off in the presence of Fe3+ due to the formation of the HABI-Fe3+ complex. In both acidic (97.4%) and basic (87.5%) environments, more than 85% corrosion inhibition efficiency at 1.0 mM was achieved through gravimetric and electrochemical studies. The inhibitor acts on both anodic and cathodic sites and the value of ΔGads0 -37.7 (acidic) and -31.8 (basic) KJmol-1 proposed the adsorption of inhibitor on the steel surface through physio-chemisorption. The surface analysis used microscopic and spectroscopic techniques like FE-SEM, FTIR, and XPS, they suggest that inhibitor form protective layer on the steel surface. The binding mechanism of the HABI inhibitor with Fe3+ was investigated through DFT studies, providing HOMO-LUMO gap of 4.42 eV for inhibitor that reduces significantly to 1.80 eV upon binding with Fe3+ proving the efficient corrosion inhibition mechanism through charge transfer that agreed with experimental results. Practical application on the steel sample coated with HABI was done and obtained excellent corrosion inhibition (99%) efficiency.
合成了羟基芳基苯并咪唑(HABI)有机分子,并对其作为钢在不同腐蚀环境(酸性和碱性)下的腐蚀传感器和缓蚀剂进行了探索。通过紫外可见光谱和荧光光谱研究了分子的传感行为,并通过重量测量、电化学测量和理论研究考察了分子的缓蚀效率。由于HABI-Fe3+络合物的形成,在Fe3+存在下HABI荧光被关闭。在酸性(97.4%)和碱性(87.5%)环境中,通过重量和电化学研究,在1.0 mM处的缓蚀效率均超过85%。该缓蚀剂同时作用于阳极和阴极,ΔGads0 -37.7(酸性)和-31.8(碱性)KJmol-1的值表明缓蚀剂通过物理化学吸附在钢表面吸附。表面分析采用FE-SEM、FTIR、XPS等显微和光谱技术,表明抑制剂在钢表面形成保护层。通过DFT研究HABI缓蚀剂与Fe3+的结合机制,发现缓蚀剂的HOMO-LUMO间隙为4.42 eV,与Fe3+结合后显著降低至1.80 eV,证明了通过电荷转移的高效缓蚀机制与实验结果一致。对HABI涂层钢样品进行了实际应用,取得了良好的缓蚀效果(99%)。
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引用次数: 0
Novel hydroxyacetimidamide derivatives of quinolin-4(1H)-one as dual inhibitor targeting AKR1B1/α-glucosidase for treatment of diabetic complications: Design, synthesis and biological evaluation 新型喹啉-4(1H)- 1羟乙酰胺衍生物作为AKR1B1/α-葡萄糖苷酶双重抑制剂治疗糖尿病并发症:设计、合成和生物学评价
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-02-01 DOI: 10.1016/j.molstruc.2026.145553
Xin Hao , Xuying Wang , Qianxi Jiang , Jingbiao Xia , Qiurui Song , Xiangyan Chen , Peng Qian , Zhongjie Wang , Changjin Zhu , Zhongfei Han
Poor blood glucose control and its resulting increased metabolism of glucose polyol pathway are the two main causes of diabetic complications. In the present study, a series of novel quinolin-4(1H)-one derivatives with hydroxyacetidine used as the bioisostere of N1-acetic acid were developed as bifunctional inhibitors of α-glucosidase and aldose reductase. The two enzymes relate to blood glucose level and anomalously elevated polyol pathway respectively. Most of these derivatives were found to be potent and selective for both enzymes with submicromolar IC50 values. Particularly, compounds 8e and 8f were the most active possessing a N1-hydroxyacetidine and phenolic hydroxyl substituted C3-phenoxy side chain. The introduction of phenolic hydroxyl was also proved to gain significant antioxidant activity, verifying the 3,5-dihydroxyphenoxy side chain as the key structure for alleviating oxidative stress. Additionally, all the hydroxyacetidine derivatives showed better permeability than the corresponding carboxylic acid. Therefore, the bioisosteric replacement of hydroxyacetidine is an effective strategy to optimize the physicochemical profile of carboxylic acid ARIs, and more suitable to construct potent dual inhibitors targeting aldose reductase/α-glucosidase for treatment of diabetic complications.
血糖控制不佳及其导致的葡萄糖多元醇途径代谢增加是糖尿病并发症的两个主要原因。本研究以羟基乙酸乙酯为n-乙酸的生物同质异构体,开发了一系列新型喹啉-4(1H)- 1衍生物,作为α-葡萄糖苷酶和醛糖还原酶的双功能抑制剂。这两种酶分别与血糖水平和异常升高的多元醇途径有关。大多数这些衍生物被发现是有效的和选择性的酶与亚微摩尔IC50值。特别是,化合物8e和8f具有n1 -羟基乙酸乙酯和酚羟基取代的c3 -苯氧侧链,是最活跃的。酚羟基的引入也被证明具有显著的抗氧化活性,验证了3,5-二羟基苯氧侧链是缓解氧化应激的关键结构。此外,所有羟基乙酸乙酯衍生物的渗透性都优于相应的羧酸。因此,羟基乙酸乙酯生物等构替代是优化羧酸类ARIs理化谱的有效策略,更适合构建针对醛糖还原酶/α-葡萄糖苷酶的强效双抑制剂治疗糖尿病并发症。
{"title":"Novel hydroxyacetimidamide derivatives of quinolin-4(1H)-one as dual inhibitor targeting AKR1B1/α-glucosidase for treatment of diabetic complications: Design, synthesis and biological evaluation","authors":"Xin Hao ,&nbsp;Xuying Wang ,&nbsp;Qianxi Jiang ,&nbsp;Jingbiao Xia ,&nbsp;Qiurui Song ,&nbsp;Xiangyan Chen ,&nbsp;Peng Qian ,&nbsp;Zhongjie Wang ,&nbsp;Changjin Zhu ,&nbsp;Zhongfei Han","doi":"10.1016/j.molstruc.2026.145553","DOIUrl":"10.1016/j.molstruc.2026.145553","url":null,"abstract":"<div><div>Poor blood glucose control and its resulting increased metabolism of glucose polyol pathway are the two main causes of diabetic complications. In the present study, a series of novel quinolin-4(<em>1H</em>)-one derivatives with hydroxyacetidine used as the bioisostere of N1-acetic acid were developed as bifunctional inhibitors of α-glucosidase and aldose reductase. The two enzymes relate to blood glucose level and anomalously elevated polyol pathway respectively. Most of these derivatives were found to be potent and selective for both enzymes with submicromolar IC<sub>50</sub> values. Particularly, compounds <strong>8e</strong> and <strong>8f</strong> were the most active possessing a N1-hydroxyacetidine and phenolic hydroxyl substituted C3-phenoxy side chain. The introduction of phenolic hydroxyl was also proved to gain significant antioxidant activity, verifying the 3,5-dihydroxyphenoxy side chain as the key structure for alleviating oxidative stress. Additionally, all the hydroxyacetidine derivatives showed better permeability than the corresponding carboxylic acid. Therefore, the bioisosteric replacement of hydroxyacetidine is an effective strategy to optimize the physicochemical profile of carboxylic acid ARIs, and more suitable to construct potent dual inhibitors targeting aldose reductase/α-glucosidase for treatment of diabetic complications.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145553"},"PeriodicalIF":4.7,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High-efficiency resolution of ionone conformational isomers through selective co-crystallization: mechanism study and process optimization 选择性共结晶高效分辨离子酮构象异构体:机理研究与工艺优化
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-31 DOI: 10.1016/j.molstruc.2026.145535
Yuhan Zhang , Guangxuan Wang , Lin Tang , Wenxi Chen , Weiqiang Yuan , Jingjing Chen , Haohong Li , Huidong Zheng
The resolution of regioisomers in ionone synthesis to obtain high-purity α-/β-ionone products is highly significant for the perfume industry. In this work, co-crystallization method was applied firstly in highly efficient resolution of α-/β-ionone, which were the cyclization step raw products with different α-/β-ionone ratios. Bisphenol Z (BPZ) was screened as co-former for selective co-crystallization, which can be executed under wide scope of α-/β-ionone ratio (nα: nβ from 1:9 to 8:2). The co-crystal was structurally determined as β-ionone·2BPZ by X-ray single crystal diffraction. According to its structure analysis, the stronger H-bond accepting ability of carbonyl on β-ionone, the bis-hydrogen bond donators provided by phenol groups, and the C–H···π interaction endowed by cyclohexane ring are the reasons for the high co-crystallization selectivity in α-/β-ionone mixtures. The co-crystallization process has been optimized, based on which high separation efficiency (αX: 3.29 × 10–3 ∼ 6.91 × 10–3) can be achieved. The final yields/purities (α-ionone: 98.83%/90.21%; β-ionone: 98.19%/98.64%) were much higher than those from traditional methods. Co-former BPZ can also be recovered facilely with high yield and purity for next co-crystallization processes. The efficient α-/β-ionone resolution can pave a new avenue for high quality perfume production.
离子酮合成中区域异构体的分离,获得高纯度的α-/β-离子酮产品,对香水工业具有重要意义。本文首次将共结晶法应用于不同α-/β-离子比的环化步骤原料α-/β-离子酮的高效分离。双酚Z (BPZ)可在α-/β-离子酮比(nα: nβ为1:9 ~ 8:2)范围内选择性共结晶。通过x射线单晶衍射在结构上确定共晶为β-离子酮·2BPZ。结构分析表明,羰基对β-离子酮较强的氢键接受能力、酚基提供的双氢键供体以及环己烷环赋予的C-H··π相互作用是α-/β-离子酮混合物具有较高共结晶选择性的原因。优化了共结晶工艺,获得了较高的分离效率(αX: 3.29 × 10-3 ~ 6.91 × 10-3)。最终收率/纯度(α-离子酮:98.83%/90.21%;β-离子酮:98.19%/98.64%)明显高于传统方法。BPZ的收率和纯度都很高,可用于后续共晶工艺。α-/β-离子酮的高效分离为高品质香水的生产开辟了新的途径。
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引用次数: 0
Azo Hydrazone–Chalcone Hybrids: DFT and experimental insights into spectroscopic and redox behavior 偶氮腙-查尔酮杂化物:光谱和氧化还原行为的DFT和实验见解
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-31 DOI: 10.1016/j.molstruc.2026.145534
Nafeesa Naeem , Charlene Marais , Marrigje Marianne Conradie , Mustafa S. Alluhaibi , Abdullah Yahya Abdullah Alzahrani , Amina Sadiq , Ernst H.G. Langner , Marthinus Rudi Swart , Nandisiwe GS Mateyise , Jeanet Conradie , Ehsan Ullah Mughal
Three hydrazone–chalcone hybrid compounds (13) were synthesized and investigated using spectroscopic, electrochemical, and computational methods. UV–Vis spectroscopy and TD-DFT calculations reveal two main absorption bands: a low-energy band at 480–500 nm arising from a hydrazone-localized HOMO → LUMO (π→π*) transition, and higher-energy bands (300–350 nm) associated with chalcone-centered excitations. Cyclic voltammetry shows a first diffusion-controlled reduction near –1.3 V vs. Fc/Fc⁺, significantly less negative than for simple chalcones, indicating hydrazone-based reduction, followed by a second chalcone-centered reduction at more negative potentials. The reduction potentials correlate inversely with DFT-calculated LUMO energies, consistent with sequential electron addition to hydrazone- and chalcone-centered orbitals. These results demonstrate that the hydrazone moiety governs the optical and redox behaviour of these hybrids, while chalcone substituents modulate higher-energy transitions.
合成了三个腙-查尔酮杂化化合物(1-3),并采用光谱、电化学和计算方法对其进行了研究。紫外可见光谱和TD-DFT计算揭示了两个主要的吸收带:480 ~ 500 nm处由腙局域HOMO→LUMO (π→π*)跃迁引起的低能带和300 ~ 350 nm与查尔酮中心激发有关的高能带。循环伏安法显示,Fc/Fc⁺在-1.3 V附近发生了第一次扩散控制还原,明显小于简单查尔酮的负还原,表明基于腙的还原,其次是第二次以查尔酮为中心的负电位还原。还原电位与dft计算的LUMO能量呈负相关,与腙和查尔酮中心轨道的顺序电子加成一致。这些结果表明,腙部分控制这些杂化物的光学和氧化还原行为,而查尔酮取代基调节高能量跃迁。
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引用次数: 0
Unveiling σ-stacking in pentane dimers using matrix isolation infrared spectroscopy and Ab initio computations: The hidden architecture of weak alkane interactions 利用矩阵隔离红外光谱和从头计算揭示戊烷二聚体中的σ-堆积:弱烷烃相互作用的隐藏结构
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-31 DOI: 10.1016/j.molstruc.2026.145543
Tulasi Barik , M. Visalakshi , Vijay Sharma , N. Ramanathan
σ-stacking interactions play a pivotal role in the structural stabilization of alkyl-containing molecular systems and have far-reaching implications across multiple areas of modern chemistry. Although inherently weak, their cumulative effect significantly influences fundamental physical properties such as phase behaviour, solubility, and melting and boiling points. In this study, σ-stacking interactions in dimers of pentane structural isomers (n-pentane, isopentane, and neopentane) are explored through an integrated theoretical and experimental approach. High-level ab initio calculations reveal multiple low-energy σ-stacked configurations for n-pentane dimers: face-to-face, slip-stacked, parallel-displaced, T-shaped, sandwich-typed, slip-displaced and partial stacked-each stabilized primarily by C–H···H–C contacts. Similar C–H···H–C contacts with varying magnitude found to stabilize isopentane, and neopentane dimers. Complementary electronic structure analyses, including Quantum Theory of Atoms-in-Molecules (QTAIM) and Natural Bond Orbital (NBO), confirm the existence of weak yet distinct σ-type interactions, while Energy Decomposition Analysis (EDA) emphasizes the cooperative contributions of dispersion and electrostatic components to overall stabilization. Further topological examinations employing Non-Covalent Interaction (NCI), Independent Gradient Model (IGM) frameworks provide spatial insights into intermolecular interaction regions. Experimental validation for model n-pentane dimers was achieved using matrix isolation infrared spectroscopy at cryogenic temperatures, facilitated by molecular beam techniques with both effusive and supersonic nozzle sources in Ar and N2 matrices. The results deliver direct spectroscopic evidence for face-to-face and slip-stacked σ-stacked configurations, offering a detailed understanding of dispersion-driven interactions in simple alkane systems.
σ-堆积相互作用在含烷基分子体系的结构稳定中起着关键作用,在现代化学的多个领域具有深远的意义。虽然本质上很弱,但它们的累积效应显著地影响了基本的物理性质,如相行为、溶解度、熔点和沸点。本研究采用理论与实验相结合的方法,研究了戊烷结构异构体(正戊烷、异戊烷和新戊烷)二聚体中的σ-堆叠相互作用。高水平从头计算揭示了正戊烷二聚体的多种低能σ堆叠构型:面对面、滑移堆叠、平行置换、t形、三明治型、滑移置换和部分堆叠,每种构型主要由C-H··H-C触点稳定。相似的不同大小的C-H··H-C接触可以稳定异戊烷和新戊烷二聚体。互补的电子结构分析,包括原子-分子量子理论(QTAIM)和自然键轨道(NBO),证实了弱而明显的σ型相互作用的存在,而能量分解分析(EDA)强调了色散和静电组分对整体稳定的协同贡献。采用非共价相互作用(NCI)、独立梯度模型(IGM)框架的进一步拓扑检查提供了对分子间相互作用区域的空间洞察。实验验证了模型正戊烷二聚体在低温下的基质分离红外光谱,以及在Ar和N2基质中使用射流和超音速喷嘴源的分子束技术。结果为面对面和滑动堆积的σ堆积构型提供了直接的光谱证据,为简单烷烃体系中色散驱动的相互作用提供了详细的理解。
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引用次数: 0
Substituent and solvent effects on photophysical and cyanide sensing properties of fluorene-based chemo-dosimeters: Spectral and TD-DFT studies 取代基和溶剂对芴基化学剂量计光物理和氰化物传感性能的影响:光谱和TD-DFT研究
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-31 DOI: 10.1016/j.molstruc.2026.145533
P. Ponlakshmi, V. Dharaniprabha, Kuppanagounder P. Elango
In the present study, three fluorene-based donor-π-acceptor (D-π-A) systems, PPL3-H, PPL3–OCH3, and PPL3-NO2 were designed and synthesized through a Knoevenagel condensation reaction between fluorene carboxaldehyde and phenyl acetonitrile derivatives bearing different substituents (-H, –OCH3, and -NO2) at the para position to evaluate their substituent effect on the optical characteristics and sensing capabilities. The fluorene core was incorporated as a donor unit, as it is strongly emissive upon extending its π-conjugation, attributed to its strong solid-state fluorescence. Optical and theoretical analysis of these derivatives highlights that a feasible intramolecular charge transfer (ICT) transition in PPL3-NO2 led to its application in the sensing field. Positive Solvatochromism is shown by PPL3-NO2, validating the existence of strong ICT. The nucleophilic addition of CN- at the electropositive carbon atom of PPL3-NO2 removes π-conjugation, leading to a drastic colour change and fluorescent enhancement. The results show that substituent tuning plays a decisive role in governing the probe's performance in cyanide ion detection. The fingerprint imaging showcases the effectiveness of PPL3-derivatives in crime scenes. The prepared test buds effectively change their colour in the presence of cyanide, and the good recoveries in real-water analysis prove the sensing efficacy of PPL3-NO2 in real-world situations.
本研究通过芴甲醛与苯基乙腈衍生物之间的Knoevenagel缩合反应,设计并合成了3个基于芴的供体-π-受体(D-π-A)体系,分别为PPL3-H、PPL3-OCH3和PPL3-NO2,并在对位上带有不同取代基(-H、-OCH3和-NO2),评价了取代基对其光学特性和传感能力的影响。荧光核作为给体单元,因为它是强发射的延伸π共轭,由于其强大的固态荧光。这些衍生物的光学和理论分析表明,PPL3-NO2中可行的分子内电荷转移(ICT)跃迁导致其在传感领域的应用。PPL3-NO2显示出正溶剂化变色,证实了强ICT的存在。在PPL3-NO2的正电碳原子上亲核加成的CN-去除π共轭,导致颜色剧烈变化和荧光增强。结果表明,取代基调谐对氰化物离子探测探针的性能起决定性作用。指纹成像显示了ppl3衍生物在犯罪现场的有效性。制备的试验芽在氰化物存在下能有效地改变其颜色,并且在实际水分析中具有良好的回收率,证明了PPL3-NO2在实际情况下的传感效果。
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引用次数: 0
Unexpected transformation of aromatic dioximes to monoximes in cyclometallated Ir(III) complexes: Structural and cytotoxic insights 环金属化Ir(III)配合物中芳香二恶英向单肟的意外转化:结构和细胞毒性见解
IF 4.7 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-31 DOI: 10.1016/j.molstruc.2026.145540
Madhusmita Jadab , Suvasmita Behera , Atanu Sahoo , Manas Kumar Santra , Swagatika Mallik , Jagadish Kumar , Satyanarayan Pal
The study presents the synthesis and structural analysis of iridium(III) oxime complexes, denoted as [Ir(ppy)2(L)]+/0, where ppy stands for 2-phenylpyridine and L represents dimethyl glyoxime (H2dmg), 2-(hydroxyimino)-1,2-diphenylethan-1-one (dbm), and 10-(hydroxyimino)phenanthren-9(10H)-one (ptm). The structural characterisations of these three complexes were conducted through FT-IR, ¹H and ¹³C NMR, ESI-MS, electronic absorption-emission spectroscopy, and cyclic voltammetry studies. Additionally, the single-crystal structures of Ir1 and Ir2 were elucidated. It revealed the deoximation of one oxime function to the keto group of diphenyl glyoxime (H2dbd) and 9,10-phenanthrenequinone dioxime (H2ptd) ancillary ligands in complexes Ir2 and Ir3, while the coordination of dioxime groups (-N-OH) of dimethyl glyoxime (H2dmg) ligand to the iridium metal center was successfully achieved in Ir1. These complexes represent the first instances of selective generation of aromatic monoximes in H2dbd and H2ptd upon coordination with iridium. The potential of these complexes as cancer therapeutics was assessed against MCF-7 and MDA-MB-231 cells, but all the complexes showed inactivity in inhibiting the growth of cancer cells. Furthermore, the complexes exhibited low quantum yields and were very weakly luminescent.
本文研究了铱(III)肟配合物的合成和结构分析,记为[Ir(ppy)2(L)]+/0,其中ppy代表2-苯基吡啶,L代表二甲基乙氧基肟(H2dmg), 2-(羟基亚胺)-1,2-二苯基比-1 (dbm)和10-(羟基亚胺)菲-9(10H)- 1 (ptm)。通过FT-IR,¹H和¹³C NMR, ESI-MS,电子吸收-发射光谱和循环伏安法研究了这三种配合物的结构特征。此外,还分析了Ir1和Ir2的单晶结构。结果表明,在配合物Ir2和Ir3中,二苯基乙氧肟(H2dbd)和9,10-菲醌二氧肟(H2ptd)的酮基上,一个肟基功能被脱氧,而在Ir1中,二甲基乙氧肟(H2dmg)的二肟基(-N-OH)与金属铱中心成功配位。这些配合物代表了H2dbd和H2ptd在与铱配位后选择性生成芳香单肟的第一个实例。这些复合物作为癌症治疗药物的潜力被评估针对MCF-7和MDA-MB-231细胞,但所有复合物在抑制癌细胞生长方面都表现出无活性。此外,配合物表现出低量子产率和非常弱的发光。
{"title":"Unexpected transformation of aromatic dioximes to monoximes in cyclometallated Ir(III) complexes: Structural and cytotoxic insights","authors":"Madhusmita Jadab ,&nbsp;Suvasmita Behera ,&nbsp;Atanu Sahoo ,&nbsp;Manas Kumar Santra ,&nbsp;Swagatika Mallik ,&nbsp;Jagadish Kumar ,&nbsp;Satyanarayan Pal","doi":"10.1016/j.molstruc.2026.145540","DOIUrl":"10.1016/j.molstruc.2026.145540","url":null,"abstract":"<div><div>The study presents the synthesis and structural analysis of iridium(III) oxime complexes, denoted as [Ir(ppy)<sub>2</sub>(L)]<sup>+/0</sup>, where ppy stands for 2-phenylpyridine and L represents dimethyl glyoxime (<strong>H<sub>2</sub>dmg</strong>), 2-(hydroxyimino)-1,2-diphenylethan-1-one (<strong>dbm</strong>), and 10-(hydroxyimino)phenanthren-9(10H)-one (<strong>ptm</strong>). The structural characterisations of these three complexes were conducted through FT-IR, ¹H and ¹³C NMR, ESI-MS, electronic absorption-emission spectroscopy, and cyclic voltammetry studies. Additionally, the single-crystal structures of <strong>Ir1</strong> and <strong>Ir2</strong> were elucidated. It revealed the deoximation of one oxime function to the keto group of diphenyl glyoxime <strong>(H<sub>2</sub>dbd)</strong> and 9,10-phenanthrenequinone dioxime <strong>(H<sub>2</sub>ptd)</strong> ancillary ligands in complexes <strong>Ir2</strong> and <strong>Ir3,</strong> while the coordination of dioxime groups (-N-OH) of dimethyl glyoxime (<strong>H<sub>2</sub>dmg</strong>) ligand to the iridium metal center was successfully achieved in <strong>Ir1</strong>. These complexes represent the first instances of selective generation of aromatic monoximes in <strong>H<sub>2</sub>dbd</strong> and <strong>H<sub>2</sub>ptd</strong> upon coordination with iridium. The potential of these complexes as cancer therapeutics was assessed against MCF-7 and MDA-MB-231 cells, but all the complexes showed inactivity in inhibiting the growth of cancer cells. Furthermore, the complexes exhibited low quantum yields and were very weakly luminescent.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1360 ","pages":"Article 145540"},"PeriodicalIF":4.7,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192545","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of Molecular Structure
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