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Virulence of Two Isolates of Meloidogyne enterolobii (Guava Root-Knot Nematode) from North Carolina on Cotton Lines Resistant to Southern Root-Knot Nematode (M. incognita) and Reniform Nematode (Rotylenchulus reniformis). 来自北卡罗来纳州的两个瓜根结线虫分离株对棉花抗南方根结线虫(M.incognita)和肾形线虫(Rotylenchulus reniformis)的毒力。
IF 1.3 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-06-23 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0021
Amanda G Gaudin, Martin J Wubben, Jack C McCarty, Johnie N Jenkins

Meloidogyne enterolobii [the guava root-knot nematode (RKN)] is an emerging plant-parasitic nematode that poses a threat to Upland cotton (Gossypium hirsutum) production in the southeastern United States. Like other RKN spp., M. enterolobii has a wide host range and proven ability to overcome resistance sources that have helped protect crops from other Meloidogyne spp., including the southern RKN (Meloidogyne incognita). In this study we evaluated the virulence of two North Carolina M. enterolobii isolates on Upland cotton germplasm lines having resistance quantitative trait loci (QTL) to RKN (M240 RNR, MRk-Rn-1) and/or reniform nematode (Rotylenchulus reniformis) (M713 Ren1, MRk-Rn-1) in comparison to their susceptible recurrent parents (DPL61, SG747). Multiple assays using eggs or J2 as inoculum demonstrated that both isolates reproduced equally well on all germplasm lines, producing reproductive factor (RF) values ≥ 6 on the otherwise nematode-resistant lines. Measurements of seedling growth in control and inoculated containers suggested that existing nematode-resistance QTL may offer a level of tolerance to M. enterolobii infection that should be further explored in greenhouse and field environments. Meloidogyne enterolobii infection of SG747 and MRk-Rn-1 showed nearly identical stages of symptom and nematode development over a time-course of 24 days. These data demonstrate that existing RKN and RN resistance QTL available in elite cotton varieties to producers are most likely insufficient in preventing yield loss due to M. enterolobii and that future research should focus on (i) understanding the M. enterolobii-cotton interaction at the molecular level, and (ii) screening novel germplasm collections to identify resistance loci.

肠叶根结线虫[番石榴根结线虫(RKN)]是一种新兴的植物寄生线虫,对美国东南部的陆地棉(Gossypium hirsutum)生产构成威胁。与其他RKN属植物一样,M.enterolobii具有广泛的寄主范围,并被证明有能力克服有助于保护作物免受其他根结线虫属植物侵害的抗性来源,包括南方RKN(南方根结线虫)。在本研究中,我们评估了两个北卡罗来纳州肠球线虫分离株对陆地棉种质系的毒力,该种质系具有对RKN(M240 RNR,MRk-Rn-1)和/或肾形线虫(肾形Rotylenchulus reniformis)(M713 Ren1,MRk-R-n-1)的抗性数量性状基因座(QTL),并与其易感复发亲本(DPL61,SG747)进行了比较。使用鸡蛋或J2作为接种物的多项试验表明,这两个分离株在所有种质系上都能同样好地繁殖,在其他线虫抗性系上产生≥6的繁殖因子(RF)值。对对照和接种容器中幼苗生长的测量表明,现有的线虫抗性QTL可能提供对肠球分枝杆菌感染的耐受水平,应在温室和田间环境中进一步探索。SG747和MRk-Rn-1的肠球根结线虫感染在24天的时间过程中表现出几乎相同的症状和线虫发育阶段。这些数据表明,生产商在优质棉花品种中可获得的现有RKN和RN抗性QTL很可能不足以防止肠球线虫造成的产量损失,未来的研究应侧重于(i)在分子水平上了解肠球线虫与棉花的相互作用,以及(ii)筛选新的种质资源以鉴定抗性基因座。
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引用次数: 0
First Reports and Morphological and Molecular Characterization of Pratylenchus delattrei and Quinisulcius capitatus Associated with Chickpea in Ethiopia. 埃塞俄比亚与鹰嘴豆相关的Pratylenchus delattrei和Quinisulcius capitatus的首次报道及其形态学和分子特征。
IF 1.3 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-06-11 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0027
Habtamu Kefelegn, Beira Hailu Meressa, Sunheng Yon, Marjolein Couvreur, Wim M L Wesemael, Misghina G Teklu, Wim Bert

Chickpea (Cicer arietinum L.) is classed among the most important leguminous crops of high economic value in Ethiopia. Two plant-parasitic nematode species, Pratylenchus delattrei and Quinisulcius capitatus, were recovered from chickpea-growing areas in Ethiopia and characterized using molecular and morphological data, including the first scanning electron microscopy data for P. delattrei. New sequences of D2-D3 of 28S, ITS rDNA and mtDNA COI genes have been obtained from these species, providing the first COI sequences for P. delattrei and Q. capitatus, with both species being found for the first time on chickpea in Ethiopia. Furthermore, Pratylenchus delattrei was recovered in Ethiopia for the first time. The information obtained about these nematodes will be crucial to developing effective nematode management plans for future chickpea production.

鹰嘴豆(Cicer arietinum L.)是埃塞俄比亚最重要的具有高经济价值的豆科作物之一。从埃塞俄比亚的鹰嘴豆种植区发现了两种植物寄生线虫,Pratylenchus delattrei和Quinisulcius capitatus,并使用分子和形态学数据进行了表征,包括第一次扫描电子显微镜数据。从这些物种中获得了28S的D2-D3、ITS rDNA和mtDNA COI基因的新序列,为P.delattrei和Q.capitatus提供了第一个COI序列,这两个物种都是在埃塞俄比亚的鹰嘴豆上首次发现的。此外,Pratylenchus delattrei首次在埃塞俄比亚被发现。获得的关于这些线虫的信息对于为未来鹰嘴豆生产制定有效的线虫管理计划至关重要。
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引用次数: 0
Rotation of Cotton (Gossypium hirsutum) Cultivars and Fallow on Yield and Rotylenchulus reniformis. 棉花(Gossypium hirsutum)品种的轮作和对产量和肾形Rotylenchulus reniformis的影响。
IF 1.4 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-06-06 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0024
Casiani Soto-Ramos, Terry A Wheeler, Jonathan Shockey, Cecilia Monclova-Santana

A three-year rotation of cotton (Gossypium hirsutum) cultivars either resistant (R) or susceptible (S) to Rotylenchulus reniformis and fallow (F) was examined for effect on cotton yield and nematode density. In year 1, 2, and 3, the resistant cultivar (DP 2143NR B3XF) yielded 78, 77, and 113% higher than the susceptible cultivar (DP 2044 B3XF). Fallow in year 1 followed by S in year 2 (F1S2) improved yield in year 2 by 24% compared with S1S2, but not as much as R1S2 (41% yield increase over S1S2). One year of fallow followed by R (F1R2) had lower yield in year 2 (11% reduction) than R1R2. The highest yield after three years of these rotations occurred with R1R2R3, followed by R1S2R3 (17% less yield) and F1F2S3 (35% less yield). Rotylenchulus reniformis density in soil averaged 57, 65, and 70% lower (year 1, 2, 3, respectively) in R1R2R3 compared with S1S2S3. In years 1 and 2, LOG10 transformed nematode density (LREN) was lower in F1, and F1F2, than for all other combinations. In year 3, the lowest LREN were associated with R1R2R3, F1S2F3, and F1F2S3. The highest LREN were associated with F1R2S3, F1S2S3, S1S2S3, R1R2S3, and R1S2S3. The combination of higher yield and lower nematode density will be a strong incentive for producers to use the R. reniformis resistant cultivars continuously.

对棉花(Gossypium hirsutum)品种(R)或敏感(S)对肾形Rotylenchulus reniformis和休耕(F)的抗性(R)和敏感性(S)进行了为期三年的轮作,以研究其对棉花产量和线虫密度的影响。在第1、2和3年,抗性品种(DP 2143NR B3XF)的产量分别比感病品种(DP 2044 B3XF)高78、77和113%。与S1S2相比,第二年的产量提高了24%,但没有R1S2那么多(比S1S2增产41%)。休耕一年后进行R(F1R2),第2年的产量(减少11%)低于R1R2。这些轮作三年后产量最高的是R1R2R3,其次是R1S2R3(产量减少17%)和F1F2S3(产量减少35%)。与S1S2S3相比,R1R2R3土壤中肾形Rotylenchulus reniformis的密度平均低57%、65%和70%(分别为第1年、第2年和第3年)。在第1年和第2年,F1和F1F2的LOG10转化线虫密度(LREN)低于所有其他组合。在第3年,最低LREN与R1R2R3、F1S2F3和F1F2S3相关。最高LREN与F1R2S3、F1S2S3、S1S2S3、R1R2S3和R1S2S3相关。较高的产量和较低的线虫密度相结合,将有力地激励生产商继续使用肾形R.reniformis抗性品种。
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引用次数: 0
Reaction of Commercial Cultivars of Kiwifruit to Infection by Root-knot Nematode and Its Biocontrol Using Endophytic Bacteria. 猕猴桃商品品种对根结线虫感染的反应及其内生细菌的生物防治。
IF 1.3 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-06-05 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0020
Seyedeh Najmeh Banihashemian, Salar Jamali, Morteza Golmohammadi, Sina Noorizadeh, Mohammad Reza Atighi

Root-knot nematodes (RKN) cause considerable economic losses to kiwifruit production annually. Screening of resistant cultivars has been one of the long-standing methods to manage root-knot nematodes. Here, the reaction of the four most common commercial cultivars of kiwifruit, namely, Actinidia chinensis var. deliciosa cv. Hayward, A. chinensis var. deliciosa cv. Abbott, A. chinensis var. deliciosa cv. Bruno, and A. chinensis var. chinensis cv. Haegeum (commonly known as 'Golden' kiwifruit) to infection by the RKN, Meloidogyne incognita, was evaluated. Among examined cultivars 'Golden' was the most susceptible, having on average 52.8 galls, 56.1 egg masses per gram of root, and 642 J2 population per 200 gram of soil. 'Bruno' showed the highest resistance, with 3.3 galls, 4.1 egg masses per gram of root, and 79 J2 in 200 g of soil. Then, two potential biological control agents, namely Priestia megaterium 31.en and Agrobacterium tumefaciens 19.en were used on 'Hayward' seedlings against M. incognita and showed a significant reduction in the number of galls and egg masses on roots, juvenile population in the soil, and increased the growth parameters of the plants compared to non-treated seedlings. We demonstrated that integrated management using resistant cultivars and biological control can provide a safe and economic method to control RKN, and these resistant cultivars can be used in breeding programs.

根结线虫(RKN)每年给猕猴桃生产造成相当大的经济损失。筛选抗性品种一直是管理根结线虫的长期方法之一。在这里,评估了四个最常见的商业猕猴桃品种,即海沃德猕猴桃、阿博特猕猴桃、布鲁诺猕猴桃和黑根猕猴桃(俗称“金色”猕猴桃)对RKN(南方根结线虫)感染的反应。在检测的品种中,“金色”是最易感的,平均每克根有52.8个五倍体,56.1个卵块,每200克土壤有642个J2群体Bruno’表现出最高的抗性,每克根有3.3个虫瘿,4.1个卵块,在200克土壤中有79个J2。然后,在“海沃德”幼苗上使用两种潜在的生物防治剂,即巨型Priestia megaterium 31.en和根癌农杆菌19.en,与未处理的幼苗相比,它们显著减少了根上的虫瘿和卵块数量,减少了土壤中的幼生种群,并增加了植物的生长参数。我们证明,使用抗性品种和生物防治的综合管理可以提供一种安全经济的方法来控制RKN,这些抗性品种可以用于育种计划。
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引用次数: 0
First Report of Direct Damage Caused by the Stubby-Root Nematode, Nanidorus minor, to Strawberry (Fragaria x ananassa), in Florida. 佛罗里达州草莓(Fragaria x ananassa)的小型短梗根线虫直接危害的首次报告。
IF 1.3 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-06-05 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0016
Clemen J Oliveira, Renato N Inserra, Johan A Desaeger

In 2019-2022, declining symptoms were observed in two commercial strawberry farms in Hillsborough County, Florida. The fields in the two farms consisted of raised beds covered by plastic mulch. Both were fumigated with a mixture of 1,3-dichloropropene (40%) + chloropicrin (60%) before planting. Samples collected from large patches with declining plants were infested with stubby-root nematodes. No sting and root-knot nematode species were detected. The results of morphological and molecular analyses indicated that the stubby-root nematode populations were representative of the species Nanidorus minor. The two cultivars 'Florida Brilliance' and 'Florida Sensation' in the two fields included plants with stubby root symptoms showing a reduction in the size of the root system and arrested growth and elongation of the feeder roots on the first strawberry crop. The nematode population densities in the two fields increased at the end of strawberry season and averaged 66 and 96 specimens in 200 cm3 soil. In one of the fields, a second strawberry crop was established as in the previous year using the same practices (fumigation and raised beds covered with plastic). However, in this field the population of N. minor declined and did not reach damaging levels at the end of the season on the second strawberry crop. The factors causing the decline of the nematode population were not elucidated. This is the first report of a direct damaging effect of N. minor to strawberry.

2019-2022年,在佛罗里达州希尔斯伯勒县的两个商业草莓农场观察到症状下降。这两个农场的田地都是用塑料覆盖的凸起的河床。在种植前,用1,3-二氯丙烯(40%)+氯化苦(60%)的混合物对两者进行熏蒸。从植物衰退的大斑块上采集的样本中有粗根线虫。未发现任何蜇伤和根结线虫。形态和分子分析结果表明,短梗根线虫种群是小Nanidorus种的代表。这两块田地里的两个品种“Florida Brilliance”和“Floridas Sensation”包括有矮根症状的植物,这些症状表明第一批草莓的根系尺寸缩小,并阻止了主根的生长和伸长。草莓季末,两块地的线虫种群密度增加,在200cm3土壤中平均有66个和96个标本。在其中一块田地里,采用了与前一年相同的做法(熏蒸和用塑料覆盖的凸起床),种植了第二批草莓。然而,在这片田地里,小N.minor的数量有所下降,在第二季草莓作物的季末没有达到破坏性的水平。导致线虫种群减少的因素尚未阐明。这是首次报道小N.minor对草莓的直接破坏作用。
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引用次数: 0
Impact of non-fumigant nematicides on reproduction and pathogenicity of Meloidogyne enterolobii and disease severity in tobacco. 非熏蒸杀线虫剂对烟根结线虫繁殖和致病性及烟草病害严重程度的影响。
IF 1.4 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-06-05 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0025
Md Shah Alam, Churamani Khanal, Joseph Roberts, William Rutter

Meloidogyne enterolobii is a highly aggressive quarantine pathogen which threatens the multibillion-dollar tobacco industry and is not manageable with the currently available management methods in tobacco. There is currently no known host plant resistance in tobacco and previous studies have shown that the lower level of the currently recommended rate of non-fumigant nematicides does not provide satisfactory management of M. enterolobii. The current study was conducted with the hypothesis that M. enterolobii can be better managed using a single soil application of the maximum allowed rate of non-fumigant nematicides. Treatments involved three non-fumigant chemical nematicides (oxamyl, fluopyram, and fluensulfone), a biological nematicide derived from Burkholderia, and a non-treated control. Fluensulfone significantly suppressed the nematode reproduction relative to the control, the suppression being 71% for eggs and 86% for the second stage juveniles (J2). Fluopyram also suppressed nematode reproduction, although this was statistically insignificant, with the suppression being 26% and 37% for eggs and J2, respectively. Oxamyl significantly suppressed J2 (80%), but not eggs (50%) in relation to the control. The most significant reduction of disease severity was achieved by the application of fluensulfone (64%), followed by oxamyl (54%) and fluopyram (48%). Except for fluensulfone, which significantly reduced the root biomass, none of the nematicides significantly impacted root and shoot biomass. The biological nematicide did not significantly affect nematode reproduction, pathogenicity, or disease severity. The results from the current study suggest that while the non-fumigant nematicides provided a good level of the nematode suppression, more research is needed to improve the efficacy of non-fumigant nematicides through employing better application methods or finding better chemistries.

肠球根结线虫是一种极具攻击性的检疫病原体,威胁着价值数十亿美元的烟草业,用目前可用的烟草管理方法是无法控制的。目前烟草中还没有已知的寄主植物抗性,先前的研究表明,目前推荐的非熏蒸杀线虫剂的使用率较低,并不能提供令人满意的肠杆菌管理。目前的研究是基于这样一种假设进行的,即使用非熏蒸杀线虫剂的最大允许速率的单一土壤施用可以更好地管理M.enterolobii。处理涉及三种非熏蒸化学杀线虫剂(恶氨酰、氟吡喃和氟磺酮)、一种源自伯克霍尔德菌的生物杀线虫剂和一种未处理的对照。与对照相比,氟磺酮显著抑制了线虫的繁殖,对卵的抑制率为71%,对第二阶段幼体的抑制率(J2)为86%。Fluopyram也抑制线虫繁殖,尽管这在统计学上不显著,对卵和J2的抑制率分别为26%和37%。与对照相比,戊基显著抑制J2(80%),但不抑制卵(50%)。最显著的疾病严重程度降低是通过使用氟磺酮(64%),其次是恶氨酰(54%)和氟吡喃(48%)。除氟磺酮显著降低根系生物量外,其他杀线虫剂均未对根系和地上部生物量产生显著影响。生物杀线虫剂对线虫的繁殖、致病性或疾病严重程度没有显著影响。目前的研究结果表明,虽然非熏蒸杀线虫剂提供了良好的线虫抑制水平,但还需要更多的研究来通过采用更好的应用方法或寻找更好的化学物质来提高非熏蒸杀虫剂的功效。
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引用次数: 0
Morphological and Molecular Characterization of Talanema eshtiaghii sp. n. (Dorylaimida, Qudsianematidae) from Iran. 伊朗Talanema eshtiaghii sp.n.(Dorylaimida,Qudsianemalidae)的形态学和分子特征。
IF 1.3 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-06-05 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0022
Nasir Vazifeh, Gholamreza Niknam, Habibeh Jabbari, Reyes Peña-Santiago

A new species of the genus Talanema, recovered from the northwest of Iran, was described based on morphological, morphometric, and molecular data. Talanema eshtiaghii sp. n. was characterized by its 1.45-1.68 mm long body, lip region offset by constriction and 13-15 μm wide, odontostyle 15-18 μm long, double guiding ring, neck 312-362 μm long, pharyngeal expansion occupying 41-43% of the total neck length, uterus tripartite, and 111-189 μm long or 2.1-3.2 body diameters, vulva transverse (V = 55-58), tail similar in both sexes, conical with a dorsal concavity (30-44 μm, c = 33-56, c' = 1.0-1.6), spicules 49-56 μm long, and 14-18 shortly spaced ventromedian supplements in front of the level of the anterior end of spicules, with distinct hiatus. It was compared to four closely similar species, with emphasis on the most relevant traits to distinguish them. Molecular phylogenetic studies using partial sequence of the 28S rDNA (D2-D3 segment) revealed that the new species forms a clade with other currently sequenced representatives of Talanema, tentatively supporting the monophyly of this genus.

根据形态学、形态计量学和分子数据,描述了从伊朗西北部发现的Talanema属的一个新种。Talanema eshtiaghii sp.n.的特征是其身体长1.45-1.68mm,唇区因收缩而偏移,宽13-15μm,齿型长15-18μm,双导向环,颈部长312-362μm,咽部扩张占颈部总长度的41-43%,子宫三重,体长111-189μm或体径2.1-3.2,外阴横向(V=55-58),尾部两性相似,圆锥形,背部凹陷(30-44μm,c=33-56,c'=1.0-1.6),小刺49-56μm长,在小刺前端水平面前有14-18个短间隔的腹内补片,有明显的裂孔。它与四个非常相似的物种进行了比较,重点是最相关的特征来区分它们。利用28S rDNA部分序列(D2-D3片段)进行的分子系统发育研究表明,该新物种与目前已测序的Talanema的其他代表形成了一个分支,初步支持该属的单系性。
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引用次数: 0
A New Biological Product Shows Promising Control of the Northern Root-Knot Nematode, Meloidogyne hapla, in Greenhouse Tomatoes. 一种新的生物制品有望控制温室番茄中的北方根结线虫。
IF 1.3 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-05-26 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0023
Elisabeth Darling, Abigail Palmisano, Henry Chung, Marisol Quintanilla-Tornel

Tomato plants are susceptible to significant yield losses when infested by the northern root-knot nematode, Meloidogyne hapla. While there are many options for conventional chemical management, few of these options offer effective control for organic growers or those who seek to adopt more environmentally considerate strategies. In this study, we showed that a new, biologically based product (referred to as "MN21.2") has potential for controlling populations of the northern root-knot nematode, Meloidogyne hapla, as a pest of susceptible tomato (cv. Rutgers) in a greenhouse trial. This is significant because if this product's efficacy is supported under field conditions, it may provide organic tomato growers with a valuable tool for fighting the plant-parasitic nematode pest, M. hapla.

番茄植株在受到北方根结线虫单倍根结线虫的侵扰时,容易遭受显著的产量损失。虽然传统化学品管理有很多选择,但这些选择很少能为有机种植者或那些寻求采取更环保策略的人提供有效的控制。在这项研究中,我们在温室试验中表明,一种新的生物基产品(称为“MN21.2”)有可能控制北方根结线虫单倍根结线虫的种群,该线虫是易感番茄(cv.Rutgers)的害虫。这一点意义重大,因为如果这种产品的功效在田间条件下得到支持,它可能会为有机番茄种植者提供一种对抗植物寄生线虫M.hapla的宝贵工具。
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引用次数: 0
Characterization of Hoplolaimus seinhorsti and Hoplolaimus pararobustus (Tylenchina: Hoplolaimidae) from banana, with phylogeny and species delineation in the genus Hoplolaimus. 香蕉Hoplolaimus seinhorsti和Hoplolaimus pararobustus的特征(中国:Hoplolaimicae),以及Hoplolaimuns属的系统发育和物种划分。
IF 1.3 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-05-23 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0019
Emmanuel Olajide, Phougeishangbam Rolish Singh, Yao A Kolombia, Merlin Kornelia Rumbarar, Marjolein Couvreur, Wim Bert

The morphological and molecular characterisations of two lance nematode species isolated from the rhizosphere of banana, Hoplolaimus seinhorsti and H. pararobustus, are provided based on an integrative study that includes light and scanning electron microscopy, phylogenetic analysis and two tree-based molecular species delimitation methods (GMYC and bPTP). Nineteen new sequences were obtained, including 5 partial 18S rRNA, 6 D2-D3 of 28S rRNA, 1 ITS rRNA and 7 COI mtDNA (the first COI sequences of H. seinhorsti and H. pararobustus), and an updated morphological character comparison of 37 Hoplolaimus species is presented. The tree-based molecular species-delimitation approaches employed gave markedly differing results, and also showed remarkable discrepancies among the investigated genes, although the bPTP output was found to agree well with established morphological species delimitations. Both species-delimitation approaches did, however, provide the same output for the COI mtDNA sequences, and the COI mtDNA gene sequence was also found to correspond better to established morphological species. It is therefore recommended by this paper as representing the most suitable barcode marker for Hoplolaimus species identification. This integrative study also resulted in the corrective reassignment of 17 gene sequences that were previously unidentified or incorrectly classified, as well as concluding that H. pararobustus consists of two cryptic species.

基于光镜和扫描电子显微镜、系统发育分析和两种基于树的分子物种划分方法(GMYC和bPTP)的综合研究,提供了从香蕉根际分离的两种矛状线虫Hoplolaimus seinhorsti和H.pararobustus的形态和分子特征。获得19个新序列,包括5个部分18S rRNA、6个28S rRNA的D2-D3、1个ITS rRNA和7个COI mtDNA(H.seinhorsti和H.pararobustus的第一个COI序列),并对37个Hoplolaimus物种的最新形态特征进行了比较。所采用的基于树的分子物种划界方法给出了明显不同的结果,并且在所研究的基因之间也显示出显著的差异,尽管发现bPTP输出与已建立的形态物种划界非常一致。然而,两种物种划界方法确实为COI mtDNA序列提供了相同的输出,并且COI mtDNA-基因序列也被发现更好地对应于已建立的形态物种。因此,本文推荐它作为最适合Hoplolaimus物种鉴定的条形码标记。这项综合研究还对17个先前未识别或分类错误的基因序列进行了纠正性重新分配,并得出结论,副粗壮线虫由两个神秘物种组成。
{"title":"Characterization of <i>Hoplolaimus seinhorsti</i> and <i>Hoplolaimus pararobustus</i> (Tylenchina: Hoplolaimidae) from banana, with phylogeny and species delineation in the genus <i>Hoplolaimus</i>.","authors":"Emmanuel Olajide, Phougeishangbam Rolish Singh, Yao A Kolombia, Merlin Kornelia Rumbarar, Marjolein Couvreur, Wim Bert","doi":"10.2478/jofnem-2023-0019","DOIUrl":"10.2478/jofnem-2023-0019","url":null,"abstract":"<p><p>The morphological and molecular characterisations of two lance nematode species isolated from the rhizosphere of banana, <i>Hoplolaimus seinhorsti</i> and <i>H. pararobustus</i>, are provided based on an integrative study that includes light and scanning electron microscopy, phylogenetic analysis and two tree-based molecular species delimitation methods (GMYC and bPTP). Nineteen new sequences were obtained, including 5 partial 18S rRNA, 6 D2-D3 of 28S rRNA, 1 ITS rRNA and 7 <i>COI</i> mtDNA (the first <i>COI</i> sequences of <i>H. seinhorsti</i> and <i>H. pararobustus</i>), and an updated morphological character comparison of 37 <i>Hoplolaimus</i> species is presented. The tree-based molecular species-delimitation approaches employed gave markedly differing results, and also showed remarkable discrepancies among the investigated genes, although the bPTP output was found to agree well with established morphological species delimitations. Both species-delimitation approaches did, however, provide the same output for the <i>COI</i> mtDNA sequences, and the <i>COI</i> mtDNA gene sequence was also found to correspond better to established morphological species. It is therefore recommended by this paper as representing the most suitable barcode marker for <i>Hoplolaimus</i> species identification. This integrative study also resulted in the corrective reassignment of 17 gene sequences that were previously unidentified or incorrectly classified, as well as concluding that <i>H. pararobustus</i> consists of two cryptic species.</p>","PeriodicalId":16475,"journal":{"name":"Journal of nematology","volume":"55 1","pages":"20230019"},"PeriodicalIF":1.3,"publicationDate":"2023-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10448604/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10586616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Morphological and Molecular Characterization of Diplogasteroides sp., a Cryptic Population of the Haslacheri Group (Diplogastridae), and Parasitorhabditis terebranus (Rhabditidae) from Korea. 韩国Haslacheri群(双壳虫科)的一个隐蔽种群——双壳拟杆菌属(Diplogastridae)和圆棒线虫(Rhabditidae)的形态学和分子特征。
IF 1.4 4区 生物学 Q2 ZOOLOGY Pub Date : 2023-05-23 eCollection Date: 2023-02-01 DOI: 10.2478/jofnem-2023-0017
Abraham Okki Mwamula, Sang Myeong Lee, Young Hak Jung, Ho-Wook Lee, Yi Seul Kim, Young Ho Kim, Dong Woon Lee

Diplogasteroides sp., a cryptic population of D. haslacheri, and Parasitorhabditis terebranus were reported from the frass of Monochamus alternatus galleries in dead Pinus thunbergii for the first time in Korea. Females and males are morphologically characterized and their linked DNA barcodes (18S-rRNA, 28S-rRNA, ITS-rRNA and COI) supplied. Females and males of the two species from Korea conform to the original species descriptions from Europe and the USA, with variations in a few details in morphometrics. Specifically, Diplogasteroides sp. is morphologically very similar to D. haslacheri. However, it cannot be designated as D. haslacheri due to the existence of cryptic species complex within the haslacheri group (D. haslacheri, D. asiaticus, D. nix, D. andrassyi, and D. carinthiacus), a condition requiring hybridization studies to test species identity within the group. Based on analysis of COI sequences, differences among these cryptic species are evident. Thus, in addition to hybridization tests, the COI might be a powerful DNA barcoding marker for the precise identification of these cryptic species within the genus. Additionally, this is the first molecular characterization of P. terebranus, and the species is herein recorded for the first time outside its type locality.

在韩国,首次从死亡的thunbergii松的Monochamus alternatus画廊中报道了双拟腹杆菌属(Diplogasteroides sp.)和terebranus寄生线虫。对雌性和雄性进行形态学表征,并提供它们的连锁DNA条形码(18S rRNA、28S rRNA,ITS rRNA和COI)。来自韩国的两个物种的雌性和雄性符合欧洲和美国的原始物种描述,在形态计量学的一些细节上存在差异。具体而言,Diplogasteroides sp.在形态上与D.haslacheri非常相似。然而,它不能被指定为D.haslacheri,因为在haslacheri群中存在隐蔽的物种复合体(D.haslacheri、D.asiaticus、D.nix、D.andrassyi和D.carinthiacus),这种情况需要杂交研究来测试群内的物种同一性。通过对COI序列的分析,这些神秘物种之间的差异是明显的。因此,除了杂交测试外,COI可能是一种强大的DNA条形码标记,用于精确识别属内这些神秘物种。此外,这是P.terebranus的第一个分子特征,该物种首次在其类型位置之外被记录。
{"title":"Morphological and Molecular Characterization of <i>Diplogasteroides</i> sp., a Cryptic Population of the <i>Haslacheri</i> Group (Diplogastridae), and <i>Parasitorhabditis terebranus</i> (Rhabditidae) from Korea.","authors":"Abraham Okki Mwamula, Sang Myeong Lee, Young Hak Jung, Ho-Wook Lee, Yi Seul Kim, Young Ho Kim, Dong Woon Lee","doi":"10.2478/jofnem-2023-0017","DOIUrl":"10.2478/jofnem-2023-0017","url":null,"abstract":"<p><p><i>Diplogasteroides</i> sp., a cryptic population of <i>D. haslacheri</i>, and <i>Parasitorhabditis terebranus</i> were reported from the frass of <i>Monochamus alternatus</i> galleries in dead <i>Pinus thunbergii</i> for the first time in Korea. Females and males are morphologically characterized and their linked DNA barcodes (18S-rRNA, 28S-rRNA, ITS-rRNA and COI) supplied. Females and males of the two species from Korea conform to the original species descriptions from Europe and the USA, with variations in a few details in morphometrics. Specifically, <i>Diplogasteroides</i> sp. is morphologically very similar to <i>D. haslacheri</i>. However, it cannot be designated as <i>D. haslacheri</i> due to the existence of cryptic species complex within the <i>haslacheri</i> group (<i>D. haslacheri</i>, <i>D. asiaticus, D. nix, D. andrassyi</i>, and <i>D. carinthiacus</i>), a condition requiring hybridization studies to test species identity within the group. Based on analysis of COI sequences, differences among these cryptic species are evident. Thus, in addition to hybridization tests, the COI might be a powerful DNA barcoding marker for the precise identification of these cryptic species within the genus. Additionally, this is the first molecular characterization of <i>P. terebranus</i>, and the species is herein recorded for the first time outside its type locality.</p>","PeriodicalId":16475,"journal":{"name":"Journal of nematology","volume":"55 1","pages":"20230017"},"PeriodicalIF":1.4,"publicationDate":"2023-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10277748/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10602703","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of nematology
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