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Towards ASSR-based hearing assessment using natural sounds 利用自然声音进行基于 ASSR 的听力评估
IF 4 3区 医学 Q1 Engineering Pub Date : 2024-04-17 DOI: 10.1088/1741-2552/ad3b6b
Anna Sergeeva, Christian Bech Christensen, Preben Kidmose
Objective. The auditory steady-state response (ASSR) allows estimation of hearing thresholds. The ASSR can be estimated from electroencephalography (EEG) recordings from electrodes positioned on both the scalp and within the ear (ear-EEG). Ear-EEG can potentially be integrated into hearing aids, which would enable automatic fitting of the hearing device in daily life. The conventional stimuli for ASSR-based hearing assessment, such as pure tones and chirps, are monotonous and tiresome, making them inconvenient for repeated use in everyday situations. In this study we investigate the use of natural speech sounds for ASSR estimation. Approach. EEG was recorded from 22 normal hearing subjects from both scalp and ear electrodes. Subjects were stimulated monaurally with 180 min of speech stimulus modified by applying a 40 Hz amplitude modulation (AM) to an octave frequency sub-band centered at 1 kHz. Each 50 ms sub-interval in the AM sub-band was scaled to match one of 10 pre-defined levels (0–45 dB sensation level, 5 dB steps). The apparent latency for the ASSR was estimated as the maximum average cross-correlation between the envelope of the AM sub-band and the recorded EEG and was used to align the EEG signal with the audio signal. The EEG was then split up into sub-epochs of 50 ms length and sorted according to the stimulation level. ASSR was estimated for each level for both scalp- and ear-EEG. Main results. Significant ASSRs with increasing amplitude as a function of presentation level were recorded from both scalp and ear electrode configurations. Significance. Utilizing natural sounds in ASSR estimation offers the potential for electrophysiological hearing assessment that are more comfortable and less fatiguing compared to existing ASSR methods. Combined with ear-EEG, this approach may allow convenient hearing threshold estimation in everyday life, utilizing ambient sounds. Additionally, it may facilitate both initial fitting and subsequent adjustments of hearing aids outside of clinical settings.
目的。听觉稳态反应(ASSR)可用于估算听阈。听觉稳态反应可通过头皮和耳内电极(耳电子脑电图)的脑电图(EEG)记录进行估算。耳部电子脑电图有可能集成到助听器中,从而实现助听器在日常生活中的自动装配。用于基于 ASSR 的听力评估的传统刺激(如纯音和鸣叫)单调乏味,不便在日常生活中反复使用。在本研究中,我们研究了使用自然语音进行 ASSR 估算的方法。研究方法对 22 名听力正常的受试者的头皮和耳部电极进行脑电图记录。对受试者进行 180 分钟的单声道语音刺激,并对以 1 kHz 为中心的倍频程频率子带进行 40 Hz 的调幅(AM)。调幅子带中每个 50 毫秒的子区间都按比例调整,以匹配 10 个预定义电平(0-45 dB 感觉电平,5 dB 为一)中的一个电平。ASSR 的表观潜伏期是根据调幅子带包络和记录的脑电图之间的最大平均交叉相关性估算的,用于对齐脑电图信号和音频信号。然后将脑电图分割成 50 毫秒长度的子时序,并根据刺激水平进行分类。对头皮脑电图和耳部脑电图的每个级别进行 ASSR 估算。主要结果。头皮和耳部电极配置均记录到显著的 ASSR,其振幅随刺激水平的增加而增加。意义重大。在 ASSR 估算中利用自然声音为电生理听力评估提供了可能性,与现有的 ASSR 方法相比,这种方法更舒适,疲劳程度更低。这种方法与耳电子脑电图相结合,可以在日常生活中利用环境声音方便地进行听力阈值评估。此外,它还能在临床环境之外为助听器的初次验配和后续调整提供便利。
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引用次数: 0
Cross-modal credibility modelling for EEG-based multimodal emotion recognition 基于脑电图的多模态情感识别的跨模态可信度建模
IF 4 3区 医学 Q1 Engineering Pub Date : 2024-04-11 DOI: 10.1088/1741-2552/ad3987
Yuzhe Zhang, Huan Liu, Di Wang, Dalin Zhang, Tianyu Lou, Qinghua Zheng, Chai Quek
Objective. The study of emotion recognition through electroencephalography (EEG) has garnered significant attention recently. Integrating EEG with other peripheral physiological signals may greatly enhance performance in emotion recognition. Nonetheless, existing approaches still suffer from two predominant challenges: modality heterogeneity, stemming from the diverse mechanisms across modalities, and fusion credibility, which arises when one or multiple modalities fail to provide highly credible signals. Approach. In this paper, we introduce a novel multimodal physiological signal fusion model that incorporates both intra-inter modality reconstruction and sequential pattern consistency, thereby ensuring a computable and credible EEG-based multimodal emotion recognition. For the modality heterogeneity issue, we first implement a local self-attention transformer to obtain intra-modal features for each respective modality. Subsequently, we devise a pairwise cross-attention transformer to reveal the inter-modal correlations among different modalities, thereby rendering different modalities compatible and diminishing the heterogeneity concern. For the fusion credibility issue, we introduce the concept of sequential pattern consistency to measure whether different modalities evolve in a consistent way. Specifically, we propose to measure the varying trends of different modalities, and compute the inter-modality consistency scores to ascertain fusion credibility. Main results. We conduct extensive experiments on two benchmarked datasets (DEAP and MAHNOB-HCI) with the subject-dependent paradigm. For the DEAP dataset, our method improves the accuracy by 4.58%, and the F1 score by 0.63%, compared to the state-of-the-art baseline. Similarly, for the MAHNOB-HCI dataset, our method improves the accuracy by 3.97%, and the F1 score by 4.21%. In addition, we gain much insight into the proposed framework through significance test, ablation experiments, confusion matrices and hyperparameter analysis. Consequently, we demonstrate the effectiveness of the proposed credibility modelling through statistical analysis and carefully designed experiments. Significance. All experimental results demonstrate the effectiveness of our proposed architecture and indicate that credibility modelling is essential for multimodal emotion recognition.
目的。通过脑电图(EEG)进行情绪识别的研究近来备受关注。将脑电图与其他外周生理信号整合可大大提高情绪识别的性能。然而,现有的方法仍然面临两个主要挑战:一是模态异质性,这源于不同模态之间的不同机制;二是融合可信度,当一种或多种模态无法提供高度可信的信号时,就会产生融合可信度问题。方法。在本文中,我们介绍了一种新型的多模态生理信号融合模型,该模型结合了模态内重建和序列模式一致性,从而确保了基于脑电图的多模态情绪识别的可计算性和可信度。针对模态异质性问题,我们首先实施了局部自注意变换器,以获得各模态的模态内特征。随后,我们设计了一个成对交叉注意变换器,以揭示不同模态之间的模态间相关性,从而使不同模态相互兼容,减少异质性问题。针对融合可信度问题,我们引入了序列模式一致性的概念,以衡量不同模态是否以一致的方式发展。具体来说,我们建议测量不同模态的变化趋势,并计算模态间的一致性得分,以确定融合可信度。主要结果。我们在两个基准数据集(DEAP 和 MAHNOB-HCI)上使用主体依赖范式进行了大量实验。在 DEAP 数据集上,与最先进的基线相比,我们的方法提高了 4.58% 的准确率和 0.63% 的 F1 分数。同样,对于 MAHNOB-HCI 数据集,我们的方法提高了 3.97% 的准确率和 4.21% 的 F1 分数。此外,通过显著性测试、消融实验、混淆矩阵和超参数分析,我们对所提出的框架有了更深入的了解。因此,我们通过统计分析和精心设计的实验证明了所提出的可信度建模的有效性。意义重大。所有实验结果都证明了我们提出的架构的有效性,并表明可信度建模对于多模态情感识别至关重要。
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引用次数: 0
Predicting resting-state brain functional connectivity from the structural connectome using the heat diffusion model: a multiple-timescale fusion method 利用热扩散模型从结构连接组预测静息态大脑功能连接:一种多时间尺度融合方法
IF 4 3区 医学 Q1 Engineering Pub Date : 2024-04-11 DOI: 10.1088/1741-2552/ad39a6
Zhengyuan Lv, Jingming Li, Li Yao, Xiaojuan Guo
Objective. Understanding the intricate relationship between structural connectivity (SC) and functional connectivity (FC) is pivotal for understanding the complexities of the human brain. To explore this relationship, the heat diffusion model (HDM) was utilized to predict FC from SC. However, previous studies using the HDM have typically predicted FC at a critical time scale in the heat kernel equation, overlooking the dynamic nature of the diffusion process and providing an incomplete representation of the predicted FC. Approach. In this study, we propose an alternative approach based on the HDM. First, we introduced a multiple-timescale fusion method to capture the dynamic features of the diffusion process. Additionally, to enhance the smoothness of the predicted FC values, we employed the Wavelet reconstruction method to maintain local consistency and remove noise. Moreover, to provide a more accurate representation of the relationship between SC and FC, we calculated the linear transformation between the smoothed FC and the empirical FC. Main results. We conducted extensive experiments in two independent datasets. By fusing different time scales in the diffusion process for predicting FC, the proposed method demonstrated higher predictive correlation compared with method considering only critical time points (Singlescale). Furthermore, compared with other existing methods, the proposed method achieved the highest predictive correlations of 0.6939 ± 0.0079 and 0.7302 ± 0.0117 on the two datasets respectively. We observed that the visual network at the network level and the parietal lobe at the lobe level exhibited the highest predictive correlations, indicating that the functional activity in these regions may be closely related to the direct diffusion of information between brain regions. Significance. The multiple-timescale fusion method proposed in this study provides insights into the dynamic aspects of the diffusion process, contributing to a deeper understanding of how brain structure gives rise to brain function.
目的。了解结构连通性(SC)和功能连通性(FC)之间错综复杂的关系对于理解人类大脑的复杂性至关重要。为了探索这种关系,研究人员利用热扩散模型(HDM)从 SC 预测 FC。然而,以往使用 HDM 的研究通常是在热核方程的临界时间尺度上预测 FC,从而忽略了扩散过程的动态性质,导致预测的 FC 不完整。方法。在本研究中,我们提出了一种基于 HDM 的替代方法。首先,我们引入了一种多时间尺度融合方法,以捕捉扩散过程的动态特征。此外,为了提高预测 FC 值的平滑度,我们采用了小波重建方法来保持局部一致性并去除噪声。此外,为了更准确地表示 SC 和 FC 之间的关系,我们计算了平滑 FC 和经验 FC 之间的线性变换。主要结果。我们在两个独立的数据集上进行了广泛的实验。通过融合扩散过程中的不同时间尺度来预测 FC,与只考虑关键时间点(单一尺度)的方法相比,所提出的方法表现出更高的预测相关性。此外,与其他现有方法相比,所提出的方法在两个数据集上分别达到了 0.6939 ± 0.0079 和 0.7302 ± 0.0117 的最高预测相关性。我们观察到,网络层面的视觉网络和顶叶层面的顶叶表现出最高的预测相关性,这表明这些区域的功能活动可能与脑区之间的直接信息扩散密切相关。意义重大。本研究提出的多时间尺度融合方法有助于深入了解扩散过程的动态方面,有助于加深对大脑结构如何产生大脑功能的理解。
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引用次数: 0
Self-supervised contrastive learning for EEG-based cross-subject motor imagery recognition 基于脑电图的跨主体运动图像识别的自监督对比学习
IF 4 3区 医学 Q1 Engineering Pub Date : 2024-04-11 DOI: 10.1088/1741-2552/ad3986
Wenjie Li, Haoyu Li, Xinlin Sun, Huicong Kang, Shan An, Guoxin Wang, Zhongke Gao
Objective. The extensive application of electroencephalography (EEG) in brain-computer interfaces (BCIs) can be attributed to its non-invasive nature and capability to offer high-resolution data. The acquisition of EEG signals is a straightforward process, but the datasets associated with these signals frequently exhibit data scarcity and require substantial resources for proper labeling. Furthermore, there is a significant limitation in the generalization performance of EEG models due to the substantial inter-individual variability observed in EEG signals. Approach. To address these issues, we propose a novel self-supervised contrastive learning framework for decoding motor imagery (MI) signals in cross-subject scenarios. Specifically, we design an encoder combining convolutional neural network and attention mechanism. In the contrastive learning training stage, the network undergoes training with the pretext task of data augmentation to minimize the distance between pairs of homologous transformations while simultaneously maximizing the distance between pairs of heterologous transformations. It enhances the amount of data utilized for training and improves the network’s ability to extract deep features from original signals without relying on the true labels of the data. Main results. To evaluate our framework’s efficacy, we conduct extensive experiments on three public MI datasets: BCI IV IIa, BCI IV IIb, and HGD datasets. The proposed method achieves cross-subject classification accuracies of 67.32%, 82.34%, and 81.13% on the three datasets, demonstrating superior performance compared to existing methods. Significance. Therefore, this method has great promise for improving the performance of cross-subject transfer learning in MI-based BCI systems.
目的。脑电图(EEG)在脑机接口(BCI)中的广泛应用归功于其非侵入性和提供高分辨率数据的能力。采集脑电信号是一个简单直接的过程,但与这些信号相关的数据集经常表现出数据稀缺性,需要大量资源才能进行正确标记。此外,由于在脑电信号中观察到的个体间差异很大,因此脑电图模型的泛化性能受到很大限制。方法。为了解决这些问题,我们提出了一种新颖的自监督对比学习框架,用于解码跨受试者场景中的运动图像(MI)信号。具体来说,我们设计了一种结合卷积神经网络和注意力机制的编码器。在对比学习训练阶段,网络以数据增强为借口进行训练,以最小化同源变换对之间的距离,同时最大化异源变换对之间的距离。这不仅增加了用于训练的数据量,还提高了网络从原始信号中提取深度特征的能力,而无需依赖数据的真实标签。主要结果为了评估我们框架的功效,我们在三个公开的人工智能数据集上进行了广泛的实验:BCI IV IIa、BCI IV IIb 和 HGD 数据集。所提出的方法在这三个数据集上的跨主体分类准确率分别达到了 67.32%、82.34% 和 81.13%,与现有方法相比表现出了卓越的性能。意义重大。因此,该方法在提高基于 MI 的 BCI 系统中的跨主体迁移学习性能方面大有可为。
{"title":"Self-supervised contrastive learning for EEG-based cross-subject motor imagery recognition","authors":"Wenjie Li, Haoyu Li, Xinlin Sun, Huicong Kang, Shan An, Guoxin Wang, Zhongke Gao","doi":"10.1088/1741-2552/ad3986","DOIUrl":"https://doi.org/10.1088/1741-2552/ad3986","url":null,"abstract":"<italic toggle=\"yes\">Objective</italic>. The extensive application of electroencephalography (EEG) in brain-computer interfaces (BCIs) can be attributed to its non-invasive nature and capability to offer high-resolution data. The acquisition of EEG signals is a straightforward process, but the datasets associated with these signals frequently exhibit data scarcity and require substantial resources for proper labeling. Furthermore, there is a significant limitation in the generalization performance of EEG models due to the substantial inter-individual variability observed in EEG signals. <italic toggle=\"yes\">Approach</italic>. To address these issues, we propose a novel self-supervised contrastive learning framework for decoding motor imagery (MI) signals in cross-subject scenarios. Specifically, we design an encoder combining convolutional neural network and attention mechanism. In the contrastive learning training stage, the network undergoes training with the pretext task of data augmentation to minimize the distance between pairs of homologous transformations while simultaneously maximizing the distance between pairs of heterologous transformations. It enhances the amount of data utilized for training and improves the network’s ability to extract deep features from original signals without relying on the true labels of the data. <italic toggle=\"yes\">Main results</italic>. To evaluate our framework’s efficacy, we conduct extensive experiments on three public MI datasets: BCI IV IIa, BCI IV IIb, and HGD datasets. The proposed method achieves cross-subject classification accuracies of 67.32<inline-formula>\u0000<tex-math><?CDATA $%$?></tex-math>\u0000<mml:math overflow=\"scroll\"><mml:mrow><mml:mi mathvariant=\"normal\">%</mml:mi></mml:mrow></mml:math>\u0000<inline-graphic xlink:href=\"jnead3986ieqn1.gif\" xlink:type=\"simple\"></inline-graphic>\u0000</inline-formula>, 82.34<inline-formula>\u0000<tex-math><?CDATA $%$?></tex-math>\u0000<mml:math overflow=\"scroll\"><mml:mrow><mml:mi mathvariant=\"normal\">%</mml:mi></mml:mrow></mml:math>\u0000<inline-graphic xlink:href=\"jnead3986ieqn2.gif\" xlink:type=\"simple\"></inline-graphic>\u0000</inline-formula>, and 81.13<inline-formula>\u0000<tex-math><?CDATA $%$?></tex-math>\u0000<mml:math overflow=\"scroll\"><mml:mrow><mml:mi mathvariant=\"normal\">%</mml:mi></mml:mrow></mml:math>\u0000<inline-graphic xlink:href=\"jnead3986ieqn3.gif\" xlink:type=\"simple\"></inline-graphic>\u0000</inline-formula> on the three datasets, demonstrating superior performance compared to existing methods. <italic toggle=\"yes\">Significance</italic>. Therefore, this method has great promise for improving the performance of cross-subject transfer learning in MI-based BCI systems.","PeriodicalId":16753,"journal":{"name":"Journal of neural engineering","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140611268","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transferable non-invasive modal fusion-transformer (NIMFT) for end-to-end hand gesture recognition 用于端到端手势识别的可转移非侵入式模态融合变换器(NIMFT)
IF 4 3区 医学 Q1 Engineering Pub Date : 2024-04-09 DOI: 10.1088/1741-2552/ad39a5
Tianxiang Xu, Kunkun Zhao, Yuxiang Hu, Liang Li, Wei Wang, Fulin Wang, Yuxuan Zhou, Jianqing Li
Objective. Recent studies have shown that integrating inertial measurement unit (IMU) signals with surface electromyographic (sEMG) can greatly improve hand gesture recognition (HGR) performance in applications such as prosthetic control and rehabilitation training. However, current deep learning models for multimodal HGR encounter difficulties in invasive modal fusion, complex feature extraction from heterogeneous signals, and limited inter-subject model generalization. To address these challenges, this study aims to develop an end-to-end and inter-subject transferable model that utilizes non-invasively fused sEMG and acceleration (ACC) data. Approach. The proposed non-invasive modal fusion-transformer (NIMFT) model utilizes 1D-convolutional neural networks-based patch embedding for local information extraction and employs a multi-head cross-attention (MCA) mechanism to non-invasively integrate sEMG and ACC signals, stabilizing the variability induced by sEMG. The proposed architecture undergoes detailed ablation studies after hyperparameter tuning. Transfer learning is employed by fine-tuning a pre-trained model on new subject and a comparative analysis is performed between the fine-tuning and subject-specific model. Additionally, the performance of NIMFT is compared to state-of-the-art fusion models. Main results. The NIMFT model achieved recognition accuracies of 93.91%, 91.02%, and 95.56% on the three action sets in the Ninapro DB2 dataset. The proposed embedding method and MCA outperformed the traditional invasive modal fusion transformer by 2.01% (embedding) and 1.23% (fusion), respectively. In comparison to subject-specific models, the fine-tuning model exhibited the highest average accuracy improvement of 2.26%, achieving a final accuracy of 96.13%. Moreover, the NIMFT model demonstrated superiority in terms of accuracy, recall, precision, and F1-score compared to the latest modal fusion models with similar model scale. Significance. The NIMFT is a novel end-to-end HGR model, utilizes a non-invasive MCA mechanism to integrate long-range intermodal information effectively. Compared to recent modal fusion models, it demonstrates superior performance in inter-subject experiments and offers higher training efficiency and accuracy levels through transfer learning than subject-specific approaches.
目的。最近的研究表明,在假肢控制和康复训练等应用中,将惯性测量单元(IMU)信号与表面肌电图(sEMG)整合在一起可以大大提高手势识别(HGR)性能。然而,目前用于多模态手势识别的深度学习模型在侵入式模态融合、异构信号的复杂特征提取和有限的主体间模型泛化方面遇到了困难。为了应对这些挑战,本研究旨在利用非侵入式融合的 sEMG 和加速度(ACC)数据,开发一种端到端和受试者间可转移的模型。方法。所提出的无创模态融合-转换器(NIMFT)模型利用基于一维卷积神经网络的补丁嵌入进行局部信息提取,并采用多头交叉注意(MCA)机制对 sEMG 和 ACC 信号进行无创融合,从而稳定 sEMG 引起的变异性。在超参数调整后,对所提出的架构进行了详细的消融研究。通过在新受试者身上微调预先训练好的模型,并在微调模型和特定受试者模型之间进行比较分析,采用了迁移学习方法。此外,还将 NIMFT 的性能与最先进的融合模型进行了比较。主要结果。在 Ninapro DB2 数据集中的三个动作集上,NIMFT 模型的识别准确率分别达到了 93.91%、91.02% 和 95.56%。提议的嵌入方法和 MCA 比传统的侵入式模态融合转换器分别高出 2.01%(嵌入)和 1.23%(融合)。与特定对象模型相比,微调模型的平均准确率提高了 2.26%,达到了 96.13% 的最终准确率。此外,与模型规模相似的最新模态融合模型相比,NIMFT 模型在准确度、召回率、精确度和 F1 分数方面都表现出了优势。意义重大。NIMFT 是一种新颖的端到端 HGR 模型,利用非侵入式 MCA 机制有效地整合了远距离多式联运信息。与最新的模态融合模型相比,它在受试者间实验中表现出更优越的性能,并通过迁移学习提供比特定受试者方法更高的训练效率和准确度。
{"title":"Transferable non-invasive modal fusion-transformer (NIMFT) for end-to-end hand gesture recognition","authors":"Tianxiang Xu, Kunkun Zhao, Yuxiang Hu, Liang Li, Wei Wang, Fulin Wang, Yuxuan Zhou, Jianqing Li","doi":"10.1088/1741-2552/ad39a5","DOIUrl":"https://doi.org/10.1088/1741-2552/ad39a5","url":null,"abstract":"<italic toggle=\"yes\">Objective.</italic> Recent studies have shown that integrating inertial measurement unit (IMU) signals with surface electromyographic (sEMG) can greatly improve hand gesture recognition (HGR) performance in applications such as prosthetic control and rehabilitation training. However, current deep learning models for multimodal HGR encounter difficulties in invasive modal fusion, complex feature extraction from heterogeneous signals, and limited inter-subject model generalization. To address these challenges, this study aims to develop an end-to-end and inter-subject transferable model that utilizes non-invasively fused sEMG and acceleration (ACC) data. <italic toggle=\"yes\">Approach.</italic> The proposed non-invasive modal fusion-transformer (NIMFT) model utilizes 1D-convolutional neural networks-based patch embedding for local information extraction and employs a multi-head cross-attention (MCA) mechanism to non-invasively integrate sEMG and ACC signals, stabilizing the variability induced by sEMG. The proposed architecture undergoes detailed ablation studies after hyperparameter tuning. Transfer learning is employed by fine-tuning a pre-trained model on new subject and a comparative analysis is performed between the fine-tuning and subject-specific model. Additionally, the performance of NIMFT is compared to state-of-the-art fusion models. <italic toggle=\"yes\">Main results.</italic> The NIMFT model achieved recognition accuracies of 93.91%, 91.02%, and 95.56% on the three action sets in the Ninapro DB2 dataset. The proposed embedding method and MCA outperformed the traditional invasive modal fusion transformer by 2.01% (embedding) and 1.23% (fusion), respectively. In comparison to subject-specific models, the fine-tuning model exhibited the highest average accuracy improvement of 2.26%, achieving a final accuracy of 96.13%. Moreover, the NIMFT model demonstrated superiority in terms of accuracy, recall, precision, and F1-score compared to the latest modal fusion models with similar model scale. <italic toggle=\"yes\">Significance.</italic> The NIMFT is a novel end-to-end HGR model, utilizes a non-invasive MCA mechanism to integrate long-range intermodal information effectively. Compared to recent modal fusion models, it demonstrates superior performance in inter-subject experiments and offers higher training efficiency and accuracy levels through transfer learning than subject-specific approaches.","PeriodicalId":16753,"journal":{"name":"Journal of neural engineering","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140611326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Orthogonal extended infomax algorithm 正交扩展 infomax 算法
IF 4 3区 医学 Q1 Engineering Pub Date : 2024-04-09 DOI: 10.1088/1741-2552/ad38db
Nicole Ille
Objective. The extended infomax algorithm for independent component analysis (ICA) can separate sub- and super-Gaussian signals but converges slowly as it uses stochastic gradient optimization. In this paper, an improved extended infomax algorithm is presented that converges much faster. Approach. Accelerated convergence is achieved by replacing the natural gradient learning rule of extended infomax by a fully-multiplicative orthogonal-group based update scheme of the ICA unmixing matrix, leading to an orthogonal extended infomax algorithm (OgExtInf). The computational performance of OgExtInf was compared with original extended infomax and with two fast ICA algorithms: the popular FastICA and Picard, a preconditioned limited-memory Broyden–Fletcher–Goldfarb–Shanno (L-BFGS) algorithm belonging to the family of quasi-Newton methods. Main results. OgExtInf converges much faster than original extended infomax. For small-size electroencephalogram (EEG) data segments, as used for example in online EEG processing, OgExtInf is also faster than FastICA and Picard. Significance. OgExtInf may be useful for fast and reliable ICA, e.g. in online systems for epileptic spike and seizure detection or brain-computer interfaces.
目的。用于独立分量分析(ICA)的扩展 infomax 算法可以分离亚高斯和超高斯信号,但由于使用随机梯度优化,收敛速度较慢。本文提出了一种改进的扩展 infomax 算法,收敛速度更快。方法。通过用基于正交组的 ICA 非混合矩阵全乘法更新方案取代扩展 infomax 的自然梯度学习规则,从而实现加速收敛,这就是正交扩展 infomax 算法(OgExtInf)。OgExtInf 的计算性能与原始扩展 infomax 算法和两种快速 ICA 算法进行了比较:流行的 FastICA 算法和 Picard 算法,后者是一种属于准牛顿方法系列的预条件有限内存 Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) 算法。主要结果OgExtInf 的收敛速度比原始扩展 infomax 快得多。对于在线脑电图处理中使用的小尺寸脑电图(EEG)数据段,OgExtInf 也比 FastICA 和 Picard 更快。意义重大。OgExtInf 可用于快速可靠的 ICA,例如用于癫痫尖峰和癫痫发作检测或脑机接口的在线系统。
{"title":"Orthogonal extended infomax algorithm","authors":"Nicole Ille","doi":"10.1088/1741-2552/ad38db","DOIUrl":"https://doi.org/10.1088/1741-2552/ad38db","url":null,"abstract":"<italic toggle=\"yes\">Objective.</italic> The extended infomax algorithm for independent component analysis (ICA) can separate sub- and super-Gaussian signals but converges slowly as it uses stochastic gradient optimization. In this paper, an improved extended infomax algorithm is presented that converges much faster. <italic toggle=\"yes\">Approach.</italic> Accelerated convergence is achieved by replacing the natural gradient learning rule of extended infomax by a fully-multiplicative orthogonal-group based update scheme of the ICA unmixing matrix, leading to an orthogonal extended infomax algorithm (OgExtInf). The computational performance of OgExtInf was compared with original extended infomax and with two fast ICA algorithms: the popular FastICA and Picard, a preconditioned limited-memory Broyden–Fletcher–Goldfarb–Shanno (L-BFGS) algorithm belonging to the family of quasi-Newton methods. <italic toggle=\"yes\">Main results.</italic> OgExtInf converges much faster than original extended infomax. For small-size electroencephalogram (EEG) data segments, as used for example in online EEG processing, OgExtInf is also faster than FastICA and Picard. <italic toggle=\"yes\">Significance.</italic> OgExtInf may be useful for fast and reliable ICA, e.g. in online systems for epileptic spike and seizure detection or brain-computer interfaces.","PeriodicalId":16753,"journal":{"name":"Journal of neural engineering","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140611269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Preparation of PLCL/ECM nerve conduits by electrostatic spinning technique and evaluation in vitro and in vivo 利用静电纺丝技术制备 PLCL/ECM 神经导管并进行体内外评估
IF 4 3区 医学 Q1 Engineering Pub Date : 2024-04-04 DOI: 10.1088/1741-2552/ad3851
Yizhan Ma, Runze Zhang, Xiaoyan Mao, Xiaoming Li, Ting Li, Fang Liang, Jing He, Lili Wen, Weizuo Wang, Xiao Li, Yanhui Zhang, Honghao Yu, Binhan Lu, Tianhao Yu, Qiang Ao
Objective. Artificial nerve scaffolds composed of polymers have attracted great attention as an alternative for autologous nerve grafts recently. Due to their poor bioactivity, satisfactory nerve repair could not be achieved. To solve this problem, we introduced extracellular matrix (ECM) to optimize the materials. Approach. In this study, the ECM extracted from porcine nerves was mixed with Poly(L-Lactide-co-ϵ-caprolactone) (PLCL), and the innovative PLCL/ECM nerve repair conduits were prepared by electrostatic spinning technology. The novel conduits were characterized by scanning electron microscopy (SEM), tensile properties, and suture retention strength test for micromorphology and mechanical strength. The biosafety and biocompatibility of PLCL/ECM nerve conduits were evaluated by cytotoxicity assay with Mouse fibroblast cells and cell adhesion assay with RSC 96 cells, and the effects of PLCL/ECM nerve conduits on the gene expression in Schwann cells was analyzed by real-time polymerase chain reaction (RT-PCR). Moreover, a 10 mm rat (Male Wistar rat) sciatic defect was bridged with a PLCL/ECM nerve conduit, and nerve regeneration was evaluated by walking track, mid-shank circumference, electrophysiology, and histomorphology analyses. Main results. The results showed that PLCL/ECM conduits have similar microstructure and mechanical strength compared with PLCL conduits. The cytotoxicity assay demonstrates better biosafety and biocompatibility of PLCL/ECM nerve conduits. And the cell adhesion assay further verifies that the addition of ECM is more beneficial to cell adhesion and proliferation. RT-PCR showed that the PLCL/ECM nerve conduit was more favorable to the gene expression of functional proteins of Schwann cells. The in vivo results indicated that PLCL/ECM nerve conduits possess excellent biocompatibility and exhibit a superior capacity to promote peripheral nerve repair. Significance. The addition of ECM significantly improved the biocompatibility and bioactivity of PLCL, while the PLCL/ECM nerve conduit gained the appropriate mechanical strength from PLCL, which has great potential for clinical repair of peripheral nerve injuries.
目的。最近,由聚合物组成的人工神经支架作为自体神经移植的替代品引起了广泛关注。由于其生物活性较差,无法实现令人满意的神经修复效果。为了解决这个问题,我们引入了细胞外基质(ECM)来优化材料。方法。本研究将从猪神经中提取的 ECM 与聚(L-乳酸-共ϵ-己内酯)(PCLL)混合,通过静电纺丝技术制备了 PLCL/ECM 创新型神经修复导管。通过扫描电子显微镜(SEM)、拉伸性能和缝合强度测试对新型导管的微观形态和机械强度进行了表征。小鼠成纤维细胞细胞毒性实验和 RSC 96 细胞粘附实验评估了 PLCL/ECM 神经导管的生物安全性和生物相容性,实时聚合酶链反应(RT-PCR)分析了 PLCL/ECM 神经导管对许旺细胞基因表达的影响。此外,大鼠(雄性 Wistar 大鼠)坐骨神经缺损 10 mm,用 PLCL/ECM 神经导管进行桥接,并通过行走轨迹、胫骨中段周长、电生理学和组织形态学分析评估神经再生情况。主要结果。结果显示,与 PLCL 导管相比,PLCL/ECM 导管具有相似的微观结构和机械强度。细胞毒性试验表明 PLCL/ECM 神经导管具有更好的生物安全性和生物相容性。细胞粘附试验进一步验证了添加 ECM 更有利于细胞粘附和增殖。RT-PCR 显示,PLCL/ECM 神经导管更有利于许旺细胞功能蛋白的基因表达。体内研究结果表明,PLCL/ECM 神经导管具有良好的生物相容性,在促进周围神经修复方面表现出卓越的能力。意义重大。ECM 的加入明显改善了 PLCL 的生物相容性和生物活性,同时 PLCL/ECM 神经导管从 PLCL 中获得了适当的机械强度,在临床修复周围神经损伤方面具有巨大潜力。
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引用次数: 0
Single-pulse electrical stimulation artifact removal using the novel matching pursuit-based artifact reconstruction and removal method (MPARRM) 利用基于匹配追寻的新型伪影重建和去除方法(MPARRM)去除单脉冲电刺激伪影
IF 4 3区 医学 Q1 Engineering Pub Date : 2023-12-08 DOI: 10.1088/1741-2552/ad1385
Tao Xie, T. Foutz, M. Adamek, James R Swift, Cory S Inman, Joseph R Manns, E. Leuthardt, Jon T. Willie, Peter Brunner
Objective: Single-pulse electrical stimulation (SPES) has been widely used to probe effective connectivity. However, analysis of the neural response is often confounded by stimulation artifacts. We developed a novel matching pursuit-based artifact reconstruction and removal method (MPARRM) capable of removing artifacts from stimulation-artifact-affected electrophysiological signals. Approach: To validate MPARRM across a wide range of potential stimulation artifact types, we performed a bench-top experiment in which we suspended electrodes in a saline solution to generate 110 types of real-world stimulation artifacts. We then added the generated stimulation artifacts to ground truth signals (stereoelectroencephalography signals from 9 human subjects recorded during a receptive speech task), applied MPARRM to the combined signal, and compared the resultant denoised signal with the ground truth signal. We further applied MPARRM to artifact-affected neural signals recorded from the hippocampus while performing SPES on the ipsilateral basolateral amygdala in 9 human subjects. Results: MPARRM could remove stimulation artifacts without introducing spectral leakage or temporal spread. It accommodated variable stimulation parameters and recovered the early response to SPES within a wide range of frequency bands. Specifically, in the early response period (5 to 10 ms following stimulation onset), we found that the broadband gamma power (70-170 Hz) of the denoised signal was highly correlated with the ground truth signal (R=0.98±0.02, Pearson), and the broadband gamma activity of the denoised signal faithfully revealed the responses to the auditory stimuli within the ground truth signal with 94±1.47% sensitivity and 99±1.01% specificity. We further found that MPARRM could reveal the expected temporal progression of broadband gamma activity along the anterior-posterior axis of the hippocampus in response to the ipsilateral amygdala stimulation. Significance: MPARRM could faithfully remove SPES artifacts without confounding the electrophysiological signal components, especially during the early-response period. This method can facilitate the understanding of the neural response mechanisms of SPES.
目的:单脉冲电刺激(SPES)已被广泛用于检测有效连通性。然而,对神经反应的分析常常被刺激伪影所混淆。我们开发了一种新的基于匹配追踪的伪影重建和去除方法(MPARRM),能够从刺激伪影影响的电生理信号中去除伪影。方法:为了在广泛的潜在刺激伪影类型中验证MPARRM,我们进行了一个台式实验,将电极悬浮在盐水溶液中,产生110种真实世界的刺激伪影。然后,我们将生成的刺激伪影添加到真实信号(9名人类受试者在接受性语音任务中记录的立体脑电图信号)中,对组合信号应用MPARRM,并将合成的去噪信号与真实信号进行比较。在对9名受试者的同侧基底外侧杏仁核进行spe时,我们进一步将MPARRM应用于从海马体记录的伪影影响神经信号。结果:MPARRM可以在不引入频谱泄漏和时间扩散的情况下去除刺激伪影。它可以适应不同的刺激参数,并在很宽的频带范围内恢复对spe的早期响应。具体而言,在刺激开始后5 ~ 10 ms的早期反应期,我们发现去噪信号的宽带伽马功率(70 ~ 170 Hz)与地面真实信号高度相关(R=0.98±0.02,Pearson),去噪信号的宽带伽马活度以94±1.47%的灵敏度和99±1.01%的特异性忠实地反映了地面真实信号内对听觉刺激的反应。我们进一步发现,MPARRM可以揭示对同侧杏仁核刺激的海马前后轴宽带伽马活动的预期时间进展。意义:MPARRM可以在不混淆电生理信号成分的情况下忠实地去除spe伪影,特别是在反应早期。该方法有助于理解SPES的神经反应机制。
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引用次数: 0
Unsupervised learning of stationary and switching dynamical system models from Poisson observations 从泊松观测中无监督学习静态和切换动力系统模型
IF 4 3区 医学 Q1 Engineering Pub Date : 2023-12-01 DOI: 10.1088/1741-2552/ad038d
Christian Y Song, M. Shanechi
Objective. Investigating neural population dynamics underlying behavior requires learning accurate models of the recorded spiking activity, which can be modeled with a Poisson observation distribution. Switching dynamical system models can offer both explanatory power and interpretability by piecing together successive regimes of simpler dynamics to capture more complex ones. However, in many cases, reliable regime labels are not available, thus demanding accurate unsupervised learning methods for Poisson observations. Existing learning methods, however, rely on inference of latent states in neural activity using the Laplace approximation, which may not capture the broader properties of densities and may lead to inaccurate learning. Thus, there is a need for new inference methods that can enable accurate model learning. Approach. To achieve accurate model learning, we derive a novel inference method based on deterministic sampling for Poisson observations called the Poisson Cubature Filter (PCF) and embed it in an unsupervised learning framework. This method takes a minimum mean squared error approach to estimation. Terms that are difficult to find analytically for Poisson observations are approximated in a novel way with deterministic sampling based on numerical integration and cubature rules. Main results. PCF enabled accurate unsupervised learning in both stationary and switching dynamical systems and largely outperformed prior Laplace approximation-based learning methods in both simulations and motor cortical spiking data recorded during a reaching task. These improvements were larger for smaller data sizes, showing that PCF-based learning was more data efficient and enabled more reliable regime identification. In experimental data and unsupervised with respect to behavior, PCF-based learning uncovered interpretable behavior-relevant regimes unlike prior learning methods. Significance. The developed unsupervised learning methods for switching dynamical systems can accurately uncover latent regimes and states in population spiking activity, with important applications in both basic neuroscience and neurotechnology.
目标。研究潜在行为的神经种群动态需要学习记录的峰值活动的精确模型,这些模型可以用泊松观测分布建模。切换动力系统模型可以通过将简单的连续动态组合在一起来捕捉更复杂的动态,从而提供解释力和可解释性。然而,在许多情况下,可靠的状态标签是不可用的,因此需要精确的泊松观测的无监督学习方法。然而,现有的学习方法依赖于使用拉普拉斯近似对神经活动中潜在状态的推断,这可能无法捕获密度的更广泛特性,并可能导致不准确的学习。因此,需要新的推理方法来实现准确的模型学习。的方法。为了实现准确的模型学习,我们提出了一种基于泊松观测的确定性采样的新型推理方法,称为泊松Cubature Filter (PCF),并将其嵌入到无监督学习框架中。该方法采用最小均方误差法进行估计。用一种基于数值积分和培养规则的确定性采样的新方法逼近了泊松观测中难以解析找到的项。主要的结果。PCF在静止和切换动力系统中实现了精确的无监督学习,在模拟和到达任务期间记录的运动皮质峰值数据中,PCF在很大程度上优于先前基于拉普拉斯近似的学习方法。对于较小的数据量,这些改进更大,这表明基于pcf的学习具有更高的数据效率,并且能够实现更可靠的状态识别。在实验数据和无监督的行为方面,基于pcf的学习揭示了与先前学习方法不同的可解释的行为相关机制。的意义。所开发的切换动态系统的无监督学习方法可以准确地揭示群体尖峰活动的潜在机制和状态,在基础神经科学和神经技术中都有重要的应用。
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引用次数: 0
A data expansion technique based on training and testing sample to boost the detection of SSVEPs for brain-computer interfaces. 一种基于训练和测试样本的数据扩展技术,以提高脑机接口中ssvep的检测。
IF 4 3区 医学 Q1 Engineering Pub Date : 2023-11-27 DOI: 10.1088/1741-2552/acf7f6
Xiaolin Xiao, Lijie Wang, Minpeng Xu, Kun Wang, Tzyy-Ping Jung, Dong Ming

Objective.Currently, steady-state visual evoked potentials (SSVEPs)-based brain-computer interfaces (BCIs) have achieved the highest interaction accuracy and speed among all BCI paradigms. However, its decoding efficacy depends deeply on the number of training samples, and the system performance would have a dramatic drop when the training dataset decreased to a small size. To date, no study has been reported to incorporate the unsupervised learning information from testing trails into the construction of supervised classification model, which is a potential way to mitigate the overfitting effect of limited samples.Approach.This study proposed a novel method for SSVEPs detection, i.e. cyclic shift trials (CSTs), which could combine unsupervised learning information from test trials and supervised learning information from train trials. Furthermore, since SSVEPs are time-locked and phase-locked to the onset of specific flashes, CST could also expand training samples on the basis of its regularity and periodicity. In order to verify the effectiveness of CST, we designed an online SSVEP-BCI system, and tested this system combined CST with two common classification algorithms, i.e. extended canonical correlation analysis and ensemble task-related component analysis.Main results.CST could significantly enhance the signal to noise ratios of SSVEPs and improve the performance of systems especially for the condition of few training samples and short stimulus time. The online information transfer rate could reach up to 236.19 bits min-1using 36 s calibration time of only one training sample for each category.Significance.The proposed CST method can take full advantages of supervised learning information from training samples and unsupervised learning information of testing samples. Furthermore, it is a data expansion technique, which can enhance the SSVEP characteristics and reduce dependence on sample size. Above all, CST is a promising method to improve the performance of SSVEP-based BCI without any additional experimental burden.

目标。目前,基于稳态视觉诱发电位(SSVEPs)的脑机接口(BCI)在所有脑机接口范式中具有最高的交互精度和速度。然而,它的解码效率很大程度上取决于训练样本的数量,当训练数据集变小时,系统性能会急剧下降。本文提出了一种新的ssvep检测方法,即循环移位试验(CSTs),该方法可以将试验试验的无监督学习信息与列车试验的有监督学习信息相结合,用于ssvep的检测。此外,由于ssvep对特定闪光的发生具有时间锁定和锁相性,CST还可以根据其规律性和周期性来扩展训练样本。为了验证CST的有效性,我们设计了一个在线SSVEP-BCI系统,并将CST与两种常用的分类算法(扩展典型相关分析和集成任务相关成分分析)相结合,对该系统进行了测试。主要的结果。特别是在训练样本少、刺激时间短的情况下,CST可以显著提高ssvep的信噪比,提高系统的性能。每类仅一个训练样本的校正时间为36 s,在线信息传输速率可达236.19 bits min-1。意义本文提出的CST方法可以充分利用训练样本的有监督学习信息和测试样本的无监督学习信息。此外,它是一种数据扩展技术,可以增强SSVEP特征并减少对样本量的依赖。综上所述,CST是一种很有前途的方法,可以在不增加实验负担的情况下提高基于ssvep的脑机接口的性能。
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引用次数: 0
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Journal of neural engineering
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