Raman spectroscopy can be effectively used for detection and analysis of chemical agents that are serious threats in modern warfare, but the detection and analysis performance is prone to deterioration due to noise. The existing denoising technique has limitations that there is no criterion for selecting the window length and that the filtering distorts the peaks, key features for Raman spectral data analysis. To overcome such limitations, in this paper, we propose the peak-aware adaptive denoising for Raman spectroscopy based on machine learning approach. The proposed technique utilizes the information of detected peaks to eliminate noise effectively using different window values optimal for each region in the Raman spectrum while preserving the shape of peaks. We conducted the various analyses and experiments, and the proposed technique showed a 28% lower Euclidean distance and a 48% lower Fréchet inception distance compared to the existing technique, meaning the proposed technique outperformed the existing one.
{"title":"Peak-aware adaptive denoising for Raman spectroscopy based on machine learning approach","authors":"Juhyung Lee, Woonghee Lee","doi":"10.1002/jrs.6648","DOIUrl":"10.1002/jrs.6648","url":null,"abstract":"<p>Raman spectroscopy can be effectively used for detection and analysis of chemical agents that are serious threats in modern warfare, but the detection and analysis performance is prone to deterioration due to noise. The existing denoising technique has limitations that there is no criterion for selecting the window length and that the filtering distorts the peaks, key features for Raman spectral data analysis. To overcome such limitations, in this paper, we propose the peak-aware adaptive denoising for Raman spectroscopy based on machine learning approach. The proposed technique utilizes the information of detected peaks to eliminate noise effectively using different window values optimal for each region in the Raman spectrum while preserving the shape of peaks. We conducted the various analyses and experiments, and the proposed technique showed a 28% lower Euclidean distance and a 48% lower Fréchet inception distance compared to the existing technique, meaning the proposed technique outperformed the existing one.</p>","PeriodicalId":16926,"journal":{"name":"Journal of Raman Spectroscopy","volume":"55 4","pages":"525-533"},"PeriodicalIF":2.5,"publicationDate":"2024-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139423959","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tumors are characterized by abnormal cell growth, which leads to uncontrolled cell proliferation, invasion of surrounding tissues, and potential metastasis to other parts of the body. Current treatments for tumors include surgery, chemotherapy, radiotherapy, targeted therapy, and biological therapy. However, many tumors are detected at advanced stages, limiting the effectiveness of these treatments. Therefore, there is a need to develop more sensitive and efficient techniques to improve patient survival rates. Surface-enhanced Raman scattering (SERS) technology is a highly sensitive molecular detection and characterization technique. It can be combined with histomorphology, immunolabeling assays, and molecular hybridization to achieve quantitative diagnosis at morphological, molecular, and genetic levels. SERS offers advantages such as objectivity, reproducibility, and comparability. However, there are challenges to address, including complex substrate or probe preparation, cumbersome data analysis, and signal reproducibility and reliability. To fully utilize the potential of SERS in the biomedical field and for clinical translation, it is important to optimize the technology and develop more sensitive, accurate, and reliable substrate or probe preparation and analysis methods. This review aims to comprehensively explain the mechanism and unique advantages of SERS technology and discuss its current status, challenges, and prospects in tumor-related research.
{"title":"Advancing clinical cancer care: Unveiling the power of surface-enhanced Raman spectroscopy","authors":"Xue Li, Guang Yang, Shuwen Zhang, He Ren","doi":"10.1002/jrs.6637","DOIUrl":"10.1002/jrs.6637","url":null,"abstract":"<p>Tumors are characterized by abnormal cell growth, which leads to uncontrolled cell proliferation, invasion of surrounding tissues, and potential metastasis to other parts of the body. Current treatments for tumors include surgery, chemotherapy, radiotherapy, targeted therapy, and biological therapy. However, many tumors are detected at advanced stages, limiting the effectiveness of these treatments. Therefore, there is a need to develop more sensitive and efficient techniques to improve patient survival rates. Surface-enhanced Raman scattering (SERS) technology is a highly sensitive molecular detection and characterization technique. It can be combined with histomorphology, immunolabeling assays, and molecular hybridization to achieve quantitative diagnosis at morphological, molecular, and genetic levels. SERS offers advantages such as objectivity, reproducibility, and comparability. However, there are challenges to address, including complex substrate or probe preparation, cumbersome data analysis, and signal reproducibility and reliability. To fully utilize the potential of SERS in the biomedical field and for clinical translation, it is important to optimize the technology and develop more sensitive, accurate, and reliable substrate or probe preparation and analysis methods. This review aims to comprehensively explain the mechanism and unique advantages of SERS technology and discuss its current status, challenges, and prospects in tumor-related research.</p>","PeriodicalId":16926,"journal":{"name":"Journal of Raman Spectroscopy","volume":"55 4","pages":"429-444"},"PeriodicalIF":2.5,"publicationDate":"2024-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139376005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Processing a graphene surface by irradiation with a fs-pulsed laser at energies below the ablation threshold allows the production of non-thermally modified regions with slightly different properties than pristine graphene. Oxidized nanoislands, optical forging, and nanopore networks are modifications of the graphene structure recently reported using a wide range of fs-laser energies. In this work, we first determined the pulse energy threshold of a fs-laser for the ablation of a commercial CVD graphene sample. Then we irradiated the sample in an extended range of pulse energies relative to the ablation threshold value. The irradiation process was simultaneously monitored by Raman spectroscopy, and the evolution of each Raman parameter (central position, bandwidth, and intensity) was analyzed. Special attention was given to the pulse energy that produced linear relationships between most Raman parameter pairs. These linear correlations evidence the interrelation between multiple Raman parameters and a soft processing method applicable to the controlled modification of the graphene lattice.
{"title":"Raman study of the soft modification of graphene by femtosecond laser irradiation","authors":"Diego Soto-Puebla, Susana Alvarez-Garcia","doi":"10.1002/jrs.6647","DOIUrl":"10.1002/jrs.6647","url":null,"abstract":"<p>Processing a graphene surface by irradiation with a fs-pulsed laser at energies below the ablation threshold allows the production of non-thermally modified regions with slightly different properties than pristine graphene. Oxidized nanoislands, optical forging, and nanopore networks are modifications of the graphene structure recently reported using a wide range of fs-laser energies. In this work, we first determined the pulse energy threshold of a fs-laser for the ablation of a commercial CVD graphene sample. Then we irradiated the sample in an extended range of pulse energies relative to the ablation threshold value. The irradiation process was simultaneously monitored by Raman spectroscopy, and the evolution of each Raman parameter (central position, bandwidth, and intensity) was analyzed. Special attention was given to the pulse energy that produced linear relationships between most Raman parameter pairs. These linear correlations evidence the interrelation between multiple Raman parameters and a soft processing method applicable to the controlled modification of the graphene lattice.</p>","PeriodicalId":16926,"journal":{"name":"Journal of Raman Spectroscopy","volume":"55 4","pages":"500-507"},"PeriodicalIF":2.5,"publicationDate":"2024-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139094441","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A three-dimensional (3D) plasmonic substrate was developed using gold nanorods (GNRs) onto a tapered fiber surface using optical tweezing. To determine the efficacy of the substrate, Raman spectra of two toxic chemicals Rhodamine 6G (R6G) and Crystal Violet (CV) were studied. The “dip and dry” method was used to adsorb the chemicals along the tapered fiber length. The minimum concentration detected for CV and R6G was 10−12 M. We have reported the characteristics and unique features of the manufactured substrate.
{"title":"Three-dimensional plasmonic substrate as surface-enhanced Raman spectroscopy (SERS) tool for the detection of trace chemicals","authors":"Navneet Kaur, Gautam Das","doi":"10.1002/jrs.6649","DOIUrl":"10.1002/jrs.6649","url":null,"abstract":"<p>A three-dimensional (3D) plasmonic substrate was developed using gold nanorods (GNRs) onto a tapered fiber surface using optical tweezing. To determine the efficacy of the substrate, Raman spectra of two toxic chemicals Rhodamine 6G (R6G) and Crystal Violet (CV) were studied. The “dip and dry” method was used to adsorb the chemicals along the tapered fiber length. The minimum concentration detected for CV and R6G was 10<sup>−12</sup> M. We have reported the characteristics and unique features of the manufactured substrate.</p>","PeriodicalId":16926,"journal":{"name":"Journal of Raman Spectroscopy","volume":"55 4","pages":"473-480"},"PeriodicalIF":2.5,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jrs.6649","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139094437","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In this publication, we demonstrate the extension of our loss-less library approach previously limited to fitting ro-vibrational N2 CARS spectra for thermometry purposes to accurate and efficient fitting of dual-pump CARS spectra with multiple species. The fundamental reasoning behind the compression approach is to make use of finite resolution effects arising from the laser linewidths, which are typically larger than the transitional linewidths. For accurate reconstruction at runtime of the fit, in addition to the squared modulus and real component, also the imaginary component as well as intra-region species cross terms have to be compressed and tabulated for dual-pump multi-species spectra. The resulting libraries do not require to tabulate combinations of mole fractions, leading to a near linear growth of the library with respect to the number of species. The accuracy and computational efficiency of the method is benchmarked using a reference implementation provided alongside this publication. Library generation times, mainly depending on the underlying spectral model, are typically in the order of seconds to a few minutes. The simulation of a single dual-pump spectrum containing three species is sped up by a factor of >5000 without significantly affecting the accuracy of reconstruction. In a simulated experiment with Stokes-noise imposed data, the time required to it temperature, mole fraction of three resonant species and wavenumber shift on a single spectrum required