Pub Date : 2026-02-09DOI: 10.1186/s12967-026-07802-1
Jae Gon Lee, In Ho Kang, A-Reum Lee, Eun Hye Oh, Chan Hyuk Park, Dong Soo Han, Chang Soo Eun
{"title":"Host-microbe interaction networks revealed through gut microbiota and microRNA correlation analysis in mouse models of chronic colitis and colitis-associated cancer.","authors":"Jae Gon Lee, In Ho Kang, A-Reum Lee, Eun Hye Oh, Chan Hyuk Park, Dong Soo Han, Chang Soo Eun","doi":"10.1186/s12967-026-07802-1","DOIUrl":"https://doi.org/10.1186/s12967-026-07802-1","url":null,"abstract":"","PeriodicalId":17458,"journal":{"name":"Journal of Translational Medicine","volume":" ","pages":""},"PeriodicalIF":7.5,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149981","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-09DOI: 10.1186/s12967-026-07762-6
Ester Ellegaard Sørensen, Amanda Frydendahl, Mads Heilskov Rasmussen, Iver Nordentoft, Michael Knudsen, Tenna Vesterman Henriksen, Sia Viborg Lindskrog, Lars Dyrskjøt, Claus Lindbjerg Andersen, Jesper Bertram Bramsen
{"title":"Molecular residual disease assessment in colorectal and bladder cancer by somatic structural variant analysis of cell-free DNA whole-genome sequencing data.","authors":"Ester Ellegaard Sørensen, Amanda Frydendahl, Mads Heilskov Rasmussen, Iver Nordentoft, Michael Knudsen, Tenna Vesterman Henriksen, Sia Viborg Lindskrog, Lars Dyrskjøt, Claus Lindbjerg Andersen, Jesper Bertram Bramsen","doi":"10.1186/s12967-026-07762-6","DOIUrl":"https://doi.org/10.1186/s12967-026-07762-6","url":null,"abstract":"","PeriodicalId":17458,"journal":{"name":"Journal of Translational Medicine","volume":" ","pages":""},"PeriodicalIF":7.5,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146149984","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-08DOI: 10.1186/s12967-026-07791-1
Luis Martínez-Heredia, Trinidad González-Cejudo, María Carmen Andreo-López, Victoria Contreras-Bolívar, Cristina García-Fontana, Beatriz García-Fontana, Manuel Muñoz-Torres
Background: Tissue-nonspecific alkaline phosphatase (TNSALP) and intestinal alkaline phosphatase (IAP) are functionally similar enzymes, but their relationship in hypophosphatasia (HPP) remains unexplored. This study investigated the impact of HPP-a condition caused by ALPL gene mutations that impair TNSALP function-on serum and fecal IAP activity.
Methods: Total alkaline phosphatase (ALP) activity and isoenzyme-specific activities (using selective inhibitors: L-homoarginine for TNSALP, L-phenylalanine for IAP) were measured in serum and stool samples from 30 HPP patients and 30 matched healthy controls, alongside biochemical parameters correlations.
Results: In serum, IAP activity showed a non-significant decrease in HPP patients compared to controls, while TNSALP and total ALP activity were reduced in HPP patients. In stools, both total ALP and IAP activities were significantly decreased compared to the control group. Multivariate linear regression revealed a strong positive association between TNSALP and IAP in both serum and feces, independent of age and sex. In serum, TNSALP and IAP were key predictors of total ALP activity (B = 0.876 and B = 0.745, respectively; p < 0.001; R² = 0.9396), with TNSALP also predicting serum IAP levels (B = 0.164; p < 0.001). In feces, IAP was the strongest predictor of total ALP activity (B = 0.921; p < 0.001), and fecal TNSALP strongly predicted IAP levels (B = 0.883; p < 0.001). Serum TNSALP activity correlated with bone metabolism markers, inflammation, underscoring its potential systemic role.
Conclusions: IAP does not seem to compensate for reduced TNSALP activity in HPP. Instead, their tight association suggests a coordinated regulation between the two isoenzymes, with diminished fecal IAP potentially contributing to gut inflammation in HPP. These findings clarify the interplay between TNSALP and IAP and their clinical implications.
背景:组织非特异性碱性磷酸酶(TNSALP)和肠道碱性磷酸酶(IAP)是功能相似的酶,但它们在低磷酸症(HPP)中的关系尚不清楚。本研究探讨了hpp(一种由ALPL基因突变引起的损害TNSALP功能的疾病)对血清和粪便IAP活性的影响。方法:测量30例HPP患者和30例健康对照者的血清和粪便样本中的总碱性磷酸酶(ALP)活性和同工酶特异性活性(使用选择性抑制剂:l -同精氨酸抑制TNSALP, l -苯丙氨酸抑制IAP),以及生化参数的相关性。结果:在血清中,HPP患者的IAP活性与对照组相比无明显下降,而TNSALP和总ALP活性在HPP患者中降低。在粪便中,与对照组相比,总ALP和IAP活性均显著降低。多元线性回归显示血清和粪便中TNSALP与IAP呈正相关,与年龄和性别无关。在血清中,TNSALP和IAP是总ALP活性的关键预测因子(B = 0.876和B = 0.745); p结论:IAP似乎不能补偿HPP中TNSALP活性的降低。相反,它们之间的紧密联系表明两种同工酶之间存在协调调节,粪便IAP减少可能会导致HPP患者的肠道炎症。这些发现阐明了TNSALP和IAP之间的相互作用及其临床意义。
{"title":"Tissue nonspecific and intestinal alkaline phosphatase crosstalk: a missing link in hypophosphatasia pathophysiology?","authors":"Luis Martínez-Heredia, Trinidad González-Cejudo, María Carmen Andreo-López, Victoria Contreras-Bolívar, Cristina García-Fontana, Beatriz García-Fontana, Manuel Muñoz-Torres","doi":"10.1186/s12967-026-07791-1","DOIUrl":"https://doi.org/10.1186/s12967-026-07791-1","url":null,"abstract":"<p><strong>Background: </strong>Tissue-nonspecific alkaline phosphatase (TNSALP) and intestinal alkaline phosphatase (IAP) are functionally similar enzymes, but their relationship in hypophosphatasia (HPP) remains unexplored. This study investigated the impact of HPP-a condition caused by ALPL gene mutations that impair TNSALP function-on serum and fecal IAP activity.</p><p><strong>Methods: </strong>Total alkaline phosphatase (ALP) activity and isoenzyme-specific activities (using selective inhibitors: L-homoarginine for TNSALP, L-phenylalanine for IAP) were measured in serum and stool samples from 30 HPP patients and 30 matched healthy controls, alongside biochemical parameters correlations.</p><p><strong>Results: </strong>In serum, IAP activity showed a non-significant decrease in HPP patients compared to controls, while TNSALP and total ALP activity were reduced in HPP patients. In stools, both total ALP and IAP activities were significantly decreased compared to the control group. Multivariate linear regression revealed a strong positive association between TNSALP and IAP in both serum and feces, independent of age and sex. In serum, TNSALP and IAP were key predictors of total ALP activity (B = 0.876 and B = 0.745, respectively; p < 0.001; R² = 0.9396), with TNSALP also predicting serum IAP levels (B = 0.164; p < 0.001). In feces, IAP was the strongest predictor of total ALP activity (B = 0.921; p < 0.001), and fecal TNSALP strongly predicted IAP levels (B = 0.883; p < 0.001). Serum TNSALP activity correlated with bone metabolism markers, inflammation, underscoring its potential systemic role.</p><p><strong>Conclusions: </strong>IAP does not seem to compensate for reduced TNSALP activity in HPP. Instead, their tight association suggests a coordinated regulation between the two isoenzymes, with diminished fecal IAP potentially contributing to gut inflammation in HPP. These findings clarify the interplay between TNSALP and IAP and their clinical implications.</p>","PeriodicalId":17458,"journal":{"name":"Journal of Translational Medicine","volume":" ","pages":""},"PeriodicalIF":7.5,"publicationDate":"2026-02-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146142836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-07DOI: 10.1186/s12967-025-07367-5
Beck J A, J S Pereira, K I Silver, McGee L E, N Von Muhlinen, Rissi D R, Butcher D O, Edmondson E F, C Mazcko, LeBlanc A K
{"title":"Spatial resolution of the metastatic osteosarcoma tumor microenvironment using immunolabeling across murine, canine and human lung.","authors":"Beck J A, J S Pereira, K I Silver, McGee L E, N Von Muhlinen, Rissi D R, Butcher D O, Edmondson E F, C Mazcko, LeBlanc A K","doi":"10.1186/s12967-025-07367-5","DOIUrl":"https://doi.org/10.1186/s12967-025-07367-5","url":null,"abstract":"","PeriodicalId":17458,"journal":{"name":"Journal of Translational Medicine","volume":" ","pages":""},"PeriodicalIF":7.5,"publicationDate":"2026-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-07DOI: 10.1186/s12967-026-07792-0
Yuqian Tang, Jiaxin Li, Wu Ye, Yiwen Du, Ying Zhang, Yunxia Ye, Yuping Gong
{"title":"Overcoming therapeutic challenges in acute myeloid leukemia: active targeting strategies by nano-drug delivery systems.","authors":"Yuqian Tang, Jiaxin Li, Wu Ye, Yiwen Du, Ying Zhang, Yunxia Ye, Yuping Gong","doi":"10.1186/s12967-026-07792-0","DOIUrl":"https://doi.org/10.1186/s12967-026-07792-0","url":null,"abstract":"","PeriodicalId":17458,"journal":{"name":"Journal of Translational Medicine","volume":" ","pages":""},"PeriodicalIF":7.5,"publicationDate":"2026-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137612","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-07DOI: 10.1186/s12967-026-07827-6
Rongjing Dong, Youwang Lu, Jiarui Zheng, Yayun Zhuang, Yingying Ma, Le Cao, Yanpeng Li, Yakhouba Kane, Chiyu Zhang, Yu-Ye Li
{"title":"First-year dynamics of the plasma virome and cytokine profile in infants born to mothers with syphilis.","authors":"Rongjing Dong, Youwang Lu, Jiarui Zheng, Yayun Zhuang, Yingying Ma, Le Cao, Yanpeng Li, Yakhouba Kane, Chiyu Zhang, Yu-Ye Li","doi":"10.1186/s12967-026-07827-6","DOIUrl":"https://doi.org/10.1186/s12967-026-07827-6","url":null,"abstract":"","PeriodicalId":17458,"journal":{"name":"Journal of Translational Medicine","volume":" ","pages":""},"PeriodicalIF":7.5,"publicationDate":"2026-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137586","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-07DOI: 10.1186/s12967-026-07700-6
Jenni Fleischauer, Philipp John-Neek, Teng-Cheong Ha, Friederike Mansel, Maike Kosanke, Anton Selich, Maike Hagedorn, Antonella Lucía Bastone, Maximilian Schinke, Violetta Dziadek, Oliver Dittrich-Breiholz, Constantin von Kaisenberg, Axel Schambach, Michael Rothe
Background: Gene therapy (GT) using retroviral vectors (RVs) is efficacious in treating monogenic diseases. However, there is an inherent risk for severe adverse effects due to insertional mutagenesis. Preclinical safety assessment and patient monitoring are inevitable in GT. To assess the genotoxic risk of novel RV vectors, mainly murine hematopoietic stem and progenitor cells (HPSCs) are routinely used, because human HSPCs cannot be immortalized in vitro using mutagenic vectors. In this study, we aim to identify early signs of clonal outgrowth by performing integration site analyses (ISA).
Methods: The small molecules A83-01, pomalidomide, and UM171 (APU) were used for the ex vivo expansion, lentiviral transduction, and long-term cultivation of umbilical cord blood-derived HSPCs. We determined the influence of APU on the stemness of HSPCs and their differentiation capacity via single-cell RNA sequencing (scRNA seq) and in xenotransplantation studies. To track vector insertion site dynamics, we transduced 7-day expanded HSPCs with a mutagenic or a safer RV. ISA was conducted in human HSPCs over a 5-week cultivation in vitro and compared to the bone marrow of xenotransplanted mice to assess clonal skewings.
Results: APU supported the expansion of CD34+CD38-CD45RA-CD90+EPCR+ HSPCs. scRNA seq confirmed the enrichment of HSC signature genes in APU-expanded HSPCs compared to the clinically used medium SFT3 (SCF, FLT3-L, TPO, IL-3). After RV transduction, APU still maintained around 30% of CD34+ cells for 5 more weeks. Without the compounds, already 2 weeks post-transduction, less than 10% of cells were CD34+. The long-term culture allowed the detection of high-risk integrations of the mutagenic SIN-LV.SF in MEIS1 or SUSD6 due to their increasing abundance over time. Bone marrow of xenotransplanted mice was less clonal but did not support the outgrowth of insertional mutants. Overall, APU increased clonal diversity.
Conclusions: Our findings propose that long-term cultivation of transduced HSPC in APU allows for outgrowth of clonal integration sites. The decrease of clonality has been observed in gene therapy patient's years after treatment. Thus, the in vitro model could be used to develop novel human HSPC-based genotoxicity assays that predict insertional mutagenesis, in addition to existing preclinical biosafety assays.
{"title":"Ex vivo long-term expansion of human hematopoietic stem and progenitor cells as a tool for modeling vector integration sites and clonality.","authors":"Jenni Fleischauer, Philipp John-Neek, Teng-Cheong Ha, Friederike Mansel, Maike Kosanke, Anton Selich, Maike Hagedorn, Antonella Lucía Bastone, Maximilian Schinke, Violetta Dziadek, Oliver Dittrich-Breiholz, Constantin von Kaisenberg, Axel Schambach, Michael Rothe","doi":"10.1186/s12967-026-07700-6","DOIUrl":"https://doi.org/10.1186/s12967-026-07700-6","url":null,"abstract":"<p><strong>Background: </strong>Gene therapy (GT) using retroviral vectors (RVs) is efficacious in treating monogenic diseases. However, there is an inherent risk for severe adverse effects due to insertional mutagenesis. Preclinical safety assessment and patient monitoring are inevitable in GT. To assess the genotoxic risk of novel RV vectors, mainly murine hematopoietic stem and progenitor cells (HPSCs) are routinely used, because human HSPCs cannot be immortalized in vitro using mutagenic vectors. In this study, we aim to identify early signs of clonal outgrowth by performing integration site analyses (ISA).</p><p><strong>Methods: </strong>The small molecules A83-01, pomalidomide, and UM171 (APU) were used for the ex vivo expansion, lentiviral transduction, and long-term cultivation of umbilical cord blood-derived HSPCs. We determined the influence of APU on the stemness of HSPCs and their differentiation capacity via single-cell RNA sequencing (scRNA seq) and in xenotransplantation studies. To track vector insertion site dynamics, we transduced 7-day expanded HSPCs with a mutagenic or a safer RV. ISA was conducted in human HSPCs over a 5-week cultivation in vitro and compared to the bone marrow of xenotransplanted mice to assess clonal skewings.</p><p><strong>Results: </strong>APU supported the expansion of CD34<sup>+</sup>CD38<sup>-</sup>CD45RA<sup>-</sup>CD90<sup>+</sup>EPCR<sup>+</sup> HSPCs. scRNA seq confirmed the enrichment of HSC signature genes in APU-expanded HSPCs compared to the clinically used medium SFT3 (SCF, FLT3-L, TPO, IL-3). After RV transduction, APU still maintained around 30% of CD34<sup>+</sup> cells for 5 more weeks. Without the compounds, already 2 weeks post-transduction, less than 10% of cells were CD34<sup>+</sup>. The long-term culture allowed the detection of high-risk integrations of the mutagenic SIN-LV.SF in MEIS1 or SUSD6 due to their increasing abundance over time. Bone marrow of xenotransplanted mice was less clonal but did not support the outgrowth of insertional mutants. Overall, APU increased clonal diversity.</p><p><strong>Conclusions: </strong>Our findings propose that long-term cultivation of transduced HSPC in APU allows for outgrowth of clonal integration sites. The decrease of clonality has been observed in gene therapy patient's years after treatment. Thus, the in vitro model could be used to develop novel human HSPC-based genotoxicity assays that predict insertional mutagenesis, in addition to existing preclinical biosafety assays.</p>","PeriodicalId":17458,"journal":{"name":"Journal of Translational Medicine","volume":" ","pages":""},"PeriodicalIF":7.5,"publicationDate":"2026-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137572","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}