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Development of data-driven machine learning models and their potential role in predicting dengue outbreak. 开发数据驱动的机器学习模型及其在预测登革热爆发中的潜在作用。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-10-01 Epub Date: 2024-11-26 DOI: 10.4103/0972-9062.393976
Bushra Mazhar, Nazish Mazhar Ali, Farkhanda Manzoor, Muhammad Kamran Khan, Muhammad Nasir, Muhammad Ramzan

Dengue fever is one of the most widespread vector-borne viral infections in the world, resulting in increased socio-economic burden. WHO has reported that 2.5 billion people are infected with dengue fever across the world, resulting in high mortalities in tropical and subtropical regions. The current article endeavors to present an overview of predicting dengue outbreaks through data-based machine-learning models. This artificial intelligence model uses real world data such as dengue surveillance, climatic variables, and epidemiological data and combines big data with machine learning algorithms to forecast dengue. Monitoring and predicting dengue incidences has been significantly enhanced through innovative approaches. This involves gathering data on various climatic factors, including temperature, rainfall, relative humidity, and wind speed, along with monthly records of dengue cases. The study functions as an efficient warning system, enabling the anticipation of dengue outbreaks. This early warning system not only alerts communities but also aids relevant authorities in implementing crucial preventive measures.

摘要:登革热是世界上最广泛的病媒传播病毒感染之一,导致社会经济负担加重。世卫组织报告称,全球有 25 亿人感染登革热,导致热带和亚热带地区的高死亡率。本文试图概述通过基于数据的机器学习模型预测登革热爆发的方法。该人工智能模型使用登革热监测、气候变量和流行病学数据等真实世界的数据,并将大数据与机器学习算法相结合来预测登革热。通过创新方法,登革热发病率的监测和预测工作得到了显著加强。这涉及收集各种气候因素的数据,包括温度、降雨量、相对湿度和风速,以及登革热病例的月度记录。这项研究发挥了高效预警系统的作用,能够预测登革热的爆发。这一预警系统不仅能提醒社区,还能帮助相关部门实施重要的预防措施。
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引用次数: 0
Computational design, docking, and molecular dynamics simulation study of RNA helicase inhibitors of dengue virus. 登革热病毒 RNA 螺旋酶抑制剂的计算设计、对接和分子动力学模拟研究。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-10-01 Epub Date: 2024-11-26 DOI: 10.4103/JVBD.jvbd_188_23
Raghunath Satpathy, Sonali Acharya, Rashmiranjan Behera

Background objectives: RNA viruses are complex pathogens in terms of their genetic makeup, mutation frequency, and transmission modes. They contain the RNA helicase enzyme, which plays a crucial role in the viral genome replication process. This work aims to develop and screen a potential molecule that could function as a dengue virus (DENV) RNA helicase inhibitor.

Methods: The present study was performed by taking 26 potential derivatives of gedunin phytochemicals from the PubChem database as ligands. The binding of the compounds was analyzed by in silico docking considering DENV RNA helicase enzyme as the receptor.

Results: After a thorough analysis of the docking scores, toxicity, and physicochemical properties, the compound tetrahydrogedunin was obtained as the best. Based on tetrahydrogedunin molecular structure, 100 drug-like molecules were designed using the Data Warrior tool. After screening for drug-likeness and ADMET properties, derivative number 42 was considered as promising. Further comparative docking of derivative 42 and a standard inhibitor molecule ST-610 with DENV RNA helicase enzyme showed binding affinity of 10.0 kcal/mol and -9.6 kcal/mol, respectively. The favorable interaction between DENV RNA helicase and derivative 42 was further validated by 50 nanoseconds molecular dynamics simulation and MM-GBSA analysis.

Interpretation conclusion: Since the antiviral activity of derivative 42 has not been reported till date, the compound was predicted as a novel therapeutic molecule that can act against the dengue virus (DENV) RNA helicase enzyme.

背景和目的:RNA 病毒在基因构成、突变频率和传播方式等方面都是复杂的病原体。它们含有 RNA 螺旋酶,该酶在病毒基因组复制过程中起着至关重要的作用。本研究旨在开发和筛选一种可作为登革热病毒(DENV)RNA螺旋酶抑制剂的潜在分子:本研究从 PubChem 数据库中提取了 26 种潜在的 gedunin 植物化学衍生物作为配体。以 DENV RNA 螺旋酶为受体,通过硅对接法分析了这些化合物的结合情况:结果:在对对接得分、毒性和理化性质进行全面分析后,化合物四氢钩藤甙(tetrahydrogedunin)的结合效果最佳。根据四氢钩藤碱的分子结构,利用 Data Warrior 工具设计了 100 个类药物分子。经过药物相似性和 ADMET 特性的筛选,42 号衍生物被认为是最有希望的。进一步比较 42 号衍生物和标准抑制剂分子 ST-610 与 DENV RNA 螺旋酶的对接,结果显示两者的结合亲和力分别为 -10.0 kcal/mol 和 -9.6 kcal/mol。50纳秒分子动力学模拟和MM-GBSA分析进一步验证了DENV RNA螺旋酶与衍生物42之间的良好相互作用:由于迄今为止尚未报道过 42 号衍生物的抗病毒活性,因此该化合物被预测为一种可对抗登革热病毒(DENV)RNA 螺旋酶的新型治疗分子。
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引用次数: 0
Evaluation of InBios Scrub Typhus Detect IgM Rapid Test in acute fever cases from Southwest and East India. 在印度西南部和东部的急性发热病例中评估 InBios 恙虫病检测 IgM 快速检测仪。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-10-01 Epub Date: 2024-11-26 DOI: 10.4103/JVBD.jvbd_73_22
Madhura Punekar, Anup Jayaram, Prasad Varamballi, Dsa Oliver, Sasidharanpillai Sabeena

Background objectives: Scrub typhus is clinically undifferentiated from other aetiologies for acute febrile illness such as enteric fever, dengue, malaria, and leptospirosis. Rapid ELISA tests are being used as an alternative to immunofluorescence assay in tropical countries.

Methods: In this study, we compared and evaluated commercially available InBios Scrub Typhus Detect IgM Rapid Test (USA) for diagnosing human scrub typhus infection using archived and prospectively collected samples against the reference standard, InBios Scrub Typhus Detect IgM ELISA (USA).

Results: The data analysis of archived samples on rapid test revealed a moderate sensitivity of 53.92% and a specificity of 100%. Meanwhile, prospective serum samples demonstrated higher sensitivity and specificity of 96.4% and 94.6%, respectively.

Interpretation conclusion: The InBios Scrub Typhus Detect IgM rapid test can be a good point-of-care assay during surveillance, outbreak investigations, and case identification.

背景目标:恙虫病与其他急性发热性疾病(如肠热、登革热、疟疾和钩端螺旋体病)在临床上没有区别。在热带国家,快速 ELISA 检测法正被用作免疫荧光检测法的替代方法:在这项研究中,我们使用存档样本和前瞻性采集样本,将市售的 InBios Scrub Typhus Detect IgM 快速检测试剂盒(美国)与参考标准 InBios Scrub Typhus Detect IgM ELISA(美国)进行比较和评估,以诊断人类恙虫病感染:对存档样本的快速检测数据分析显示,灵敏度为 53.92%,特异性为 100%。同时,前瞻性血清样本的灵敏度和特异性较高,分别为 96.4% 和 94.6%:InBios恙虫病检测IgM快速检测试剂盒可作为监测、疫情调查和病例鉴定中的一种良好的床旁检测方法。
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引用次数: 0
Canine leishmaniasis in Maghreb countries: A systematic review and meta-analysis.
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-10-01 Epub Date: 2024-11-26 DOI: 10.4103/JVBD.jvbd_2_24
Sabrina Baaziz, Rima Sadeddine, Faycal Zeroual, Ahmed Benakhla, Souad Righi

Canine leishmaniasis (CanL) is a zoonotic disease caused by infection with Leishmania infantum and transmitted by female phlebotomine sandflies. It is prevalent in the Mediterranean basin, including the Maghreb region which comprises of Algeria, Tunisia, and Morocco. The environmental conditions in this area provide a suitable habitat for the proliferation of the phlebotomine sandfly, making it an endemic region for CanL. In this context, we carried out a systematic review and meta-analysis on the prevalence of canine leishmaniasis in these three Maghreb countries, identifying the risk factors for L. infantum infection. Data were collected from 27 papers published between 1973 and 2022 selected from five databases: PubMed, Google Scholar, ResearchGate, ScienceDirect and Scopus. Our selection criteria included both descriptive and analytical studies on canine leishmaniasis in Maghreb, as well as epidemiological studies that reported the prevalence of leishmaniasis infection. The meta-analysis was performed using Review Manager (RevMan) software version 5.4.1. based on predefined inclusion criteria. A total of 11,736 dogs were included in the analysis, among which 2481 were tested Leishmania positive cases. Over the years, the highest prevalence (68.32%) was recorded in Tiaret (Algeria) and the lowest (4.3%) in Tunisia. The examination of the risk factors revealed a heightened incidence of the disease in dogs of shepherd breeds, living in rural environments, displaying no apparent symptoms, and falling within the age range of 2 to 4 years. The findings presented in this study contribute a significant value to the exploration of leishmaniasis in this region, particularly by shedding light on the associated risk factors. Ultimately, substantial endeavors are warranted to enhance prevention, treatment, and overall control of the disease.

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引用次数: 0
Spatiotemporal, demographic, and climatic drivers of malaria transmission in the endemic setting of Jazan, Saudi Arabia: A retrospective study. 沙特阿拉伯贾赞疟疾流行地区疟疾传播的时空、人口和气候驱动因素:一项回顾性研究。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-10-01 Epub Date: 2024-11-26 DOI: 10.4103/JVBD.jvbd_38_24
Ahmad Y Alqassim

Background objectives: Despite progress, malaria remains endemic in Jazan, Saudi Arabia necessitating epidemiological research to guide elimination strategies. This study analyzed recent surveillance data to elucidate drivers of sustained transmission. A retrospective epidemiological study was conducted using malaria surveillance data from the Jazan region of Saudi Arabia over a 3-year period from January 2018 to December 2020.

Methods: Deidentified records of all confirmed malaria cases reported across Jazan during the study period were obtained from Jazan Department of Health infectious disease surveillance system. Additional meteorological data was acquired to assess climatic correlates. The final analysis included 5255 confirmed cases that met the completeness criteria for key variables. Descriptive statistics characterized cases across demographic factors and spatial and temporal distributions. Correlations and linear regression modeling identified associations between monthly cases and weather parameters mapping visualized geographic patterns.

Results: Of the 5255 confirmed cases, most were concentrated in Baish sector (50.8-72.0% annually), affected adult male foreigners (93.8-97.0%), peaked inconsistently across seasons, and were imported (85.4-94.9%). Non-Saudi nationalities had 6-fold higher incidence versus Saudi citizens in 2020 (677.6 vs 23.1 per 100,000). Monthly cases associated negatively with temperature (p=0.015) and positively with windspeed (p=0.005).

Interpretation conclusion: Malaria persistence in Jazan involves geographic and demographic hotspots driven by imported infections and climate effects on vectors. Tailored programming aligned with evolving local dynamics will be essential to sustain elimination gains. Surveillance, optimized interventions, and flexible adaptation to high-risk locations and/or populations and meteorological influences are key priorities.

背景目标:尽管取得了进展,但疟疾仍在沙特阿拉伯的贾赞流行,因此有必要进行最新的流行病学研究,以指导消除疟疾的策略。本研究分析了最近的监测数据,以阐明持续传播的驱动因素。从 2018 年 1 月至 2020 年 12 月的 3 年间,我们利用沙特阿拉伯贾赞地区的疟疾监测数据开展了一项回顾性流行病学研究:从贾赞卫生部传染病监测系统中获取了研究期间贾赞地区报告的所有疟疾确诊病例的去身份记录。此外,还获取了其他气象数据以评估气候相关性。最终分析包括符合关键变量完整性标准的 5255 例确诊病例。描述性统计分析了不同人口因素和时空分布的病例特征。相关性和线性回归模型确定了每月病例与天气参数之间的关联。制图直观显示了地理模式:在 5255 例确诊病例中,大多数病例集中在拜什区(每年 50.8-72.0%),受影响的成年男性为外籍人士(93.8-97.0%),不同季节的发病高峰不一致,且为输入性病例(85.4-94.9%)。2020 年,非沙特籍患者的发病率是沙特公民的 6 倍(每 10 万人中有 677.6 例与 23.1 例)。月发病率与气温呈负相关(p=0.015),与风速呈正相关(p=0.005):贾赞的疟疾持续存在涉及地理和人口热点,由外来感染和气候对病媒的影响驱动。要保持消灭疟疾的成果,就必须根据当地不断变化的动态制定有针对性的计划。监测、优化干预措施以及灵活适应高风险地点/人群和气象影响是关键的优先事项。
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引用次数: 0
Drugs resistance and new strategies of prevention against Malaria: An ongoing battle. 抗药性和预防疟疾的新策略:一场持久战。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-07-12 DOI: 10.4103/JVBD.JVBD_72_24
Lisa Basu, Biplab Bhowmik, Aparajita Pal, Priya Roy, Bipasa Dey, Riya Mondal, Chayanika Roy, Labani Halder

From ancient times until 21st century, Malaria has remained a fatal disease. It causes death in many poor and developing countries. Excluding vector control, Antimalarial drugs are the most reliable and effective weapon to tackle this severe disease. The emergence of antimalarial drug resistance in Plasmodium spp. becomes a barrier in Malaria elimination program as there has been no effective antimalarial vaccine till today. Apart from artemisinin, most of the antimalarial drugs have become resistant against malaria at present. Although, reduced efficacy of artemisinin-based combination therapy (ACT) has also been reported from southeast regions of Asia. Mutation of some genes within the parasite play a vital role in this drug resistance. Therefore, malaria is still a prime threat to human death and an unsolved problem. Newly emerging approaches like, vaccine development, plants based antimalarial drugs, nanoparticles, next generation antimalarial drugs should be taken & supported. In addition to that, public awareness is much needed for understanding the fatality of the disease and for encouraging self-protection and early treatment.

从古至今,疟疾一直是一种致命疾病。它在许多贫穷的发展中国家造成死亡。除病媒控制外,抗疟药物是应对这一严重疾病最可靠、最有效的武器。由于至今还没有有效的抗疟疫苗,疟原虫对抗疟药物产生的抗药性成为消除疟疾计划的障碍。目前,除青蒿素外,大多数抗疟药物都对疟疾产生了抗药性。尽管亚洲东南部地区也有青蒿素类复方疗法(ACT)疗效下降的报道。寄生虫体内某些基因的变异在抗药性的产生中起到了至关重要的作用。因此,疟疾仍然是人类死亡的主要威胁,也是一个悬而未决的问题。应采取并支持新出现的方法,如疫苗开发、植物抗疟药物、纳米粒子、下一代抗疟药物等。除此以外,还需要提高公众意识,以了解该疾病的致命性,鼓励自我保护和早期治疗。
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引用次数: 0
A review of loiasis and its vectors in Gabon. 加蓬卢埃斯病及其病媒研究综述。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-07-12 DOI: 10.4103/JVBD.JVBD_78_24
Sevidzem Silas Lendzele, Poungou Natacha, Mintsa Nguema Rodrigue, Jacques François Mavoungou

Loiasis colloquially known as tropical eye worm is a neglected tropical helminthic disease that affects the rural poor population of Gabon. A systematic review of 51 documents (45 peer reviewed papers and six dissertations) over four decades has documented many knowledge gaps on loiasis and its vectors. Higher prevalence and high microfilaremia is typical wherever Chrysops vectors occur. The two main vectors were C. silacea and C. dimidiata along with the savanna species C. longicornis. The two main vectors were only caught around forested national parks at low density (<1 Chrysops per trap per day). Chrysops longicornis was trapped in the savanna zone at higher numbers at a cattle ranch in Nyanga province. Leukoconcentration and Field's stain for L. loa diagnosis performed well as diagnostic tools. However, studies on diagnostic efficacy remain scant, and no study has focused on the evolution of L. loa at the wildlife-human interface of Gabon.

俗称热带眼虫的丝虫病是一种被忽视的热带蠕虫病,影响着加蓬农村的贫困人口。四十年来,我们对 51 篇文献(45 篇同行评审论文和 6 篇学位论文)进行了系统回顾,发现了许多关于卢虫病及其病媒的知识空白。凡是有金龟子病媒出现的地方,都有较高的发病率和较高的细螺旋体病。两种主要病媒是 C. silacea 和 C. dimidiata 以及热带草原物种 C. longicornis。这两种主要病媒仅在森林国家公园附近被低密度捕获 (
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引用次数: 0
Transmission regulating immune genes- a potential strategy to control vector borne disease. 传播调节免疫基因--控制病媒传染病的潜在策略。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-07-12 DOI: 10.4103/JVBD.JVBD_157_23
Hemlata Srivastava, Bhavna Gupta, Mohammad Irfan Ali, Sarmad Moin

Background objectives: More than 1 million people die every year from vector-borne diseases, which constitute more than 17% of all infectious diseases. This study's primary focus is on the detailed evolutionary history and expression analysis of immune genes, one of the key gene families in the immune system of vectors that play a role in the regulation and interaction of parasites in vector bodies, particularly the mosquitoes that transmit malaria and dengue, significant vector borne disease.

Methods: The vector potentiality and participation of TLR genes in vector parasite interaction in the Indian context will be explained by the differential expression study of this potential gene family in Indian populations of vector species.

Results: This knowledge is supportive undoubtedly for creating new pharmacological targets and inhibitors that can create insect-based transmission stopping techniques for many vector-borne diseases.

Interpretation conclusion: However, the genetic diversity was found to be comparatively lower in the Toll1A gene than in the NOS immune gene in the malaria vector An. minimus population samples which supports the hypothesis of positive selection in recent evolutionary time scale in malaria vectors. This is one of the novel strategies to identify transmission regulating genetic traits that are controlling the vector-parasite interaction and co-evolution in vector borne disease.

背景目标:每年有 100 多万人死于病媒传染病,占所有传染病的 17%以上。本研究的主要重点是免疫基因的详细进化史和表达分析,免疫基因是病媒免疫系统中的关键基因家族之一,在病媒体内寄生虫的调控和相互作用中发挥作用,特别是传播疟疾和登革热的蚊子,是重要的病媒传播疾病:方法:将通过对印度病媒种群中这一潜在基因家族的差异表达研究,解释印度病媒的潜力和 TLR 基因在病媒寄生虫相互作用中的参与情况:这些知识无疑有助于创造新的药理靶点和抑制剂,从而为许多病媒传播疾病创造基于昆虫的传播阻断技术:然而,在疟疾病媒 An. minimus 种群样本中,发现 Toll1A 基因的遗传多样性相对低于 NOS 免疫基因,这支持了疟疾病媒在近期进化时间尺度上的正选择假说。这是确定控制病媒-寄生虫相互作用和病媒传播疾病共同进化的传播调节遗传特征的新策略之一。
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引用次数: 0
Lethal and sublethal effects of spinosad on dengue vector mosquito, Aedes albopictus and bancroftian filariasis vector mosquito, Culex pipiens pallens. spinosad 对登革热病媒蚊子白纹伊蚊和盘尾丝虫病病媒蚊子库蚊的致死和亚致死效应。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-07-07 DOI: 10.4103/JVBD.JVBD_58_24
Xiao Zhang, Fange Meng, Hui Xu, Ling Wei, Yongming Wang, Xiao Huang, Dong Wang

Background objectives: Aedes albopictu and Culex pipiens pallens are important vectors of many viruses and have had resistance to chemical pesticide. Spinosad is a selective biological insecticide to control urban mosquito. The aim of this study was to reveal the sublethal effects of spinosad on mosquito and provide reference basis for integrated mosquito management.

Methods: The toxicity of spinosad against Ae. albopictus and Cx. pipiens pallens were determined under laboratory conditions by exposing early third-instar larvae to different concentrations.

Results: The LC50 values of spinosad to Ae. albopictus and Cx. Pipiens pallens larvaes were 4.44×10-3 mg∙L-1 and 1.93×10-3 mg∙L-1 respectively after 72 h exposure. Spinosad at sublethal concentrations has many negative effects on Ae. albopictus and Cx. Pipiens pallens larval, pupae, adult and offspring eggs, including significantly reduced their larvae pupation rate by 51.37% and 58.47%, significantly prolonged pupae length by 21.43% and 16.18%, reduced female wing-spans by 20.19% and 14.89%, reduced male wing-spans by 3.84% and 7.54%, reduced female weight by 29.04% and 31.52%, reduced male weight by 7.47% and 9.07%, reduced female and male ratio by 51.98% and 45.21%, reduced individual egg-laying amount by 15.73% and 35.51%, in addition, offspring egg hatchability were dramatically decreased by 25.71% and 34.04%, egg periods were significantly prolonged by 14.42% and 62.82% respectively. No significant effect on larval period, pupae emergence rate, female bite rates were observed.

Interpretation conclusion: These results suggest that spinosad might affect pest population dynamics significantly and is fairly expected to be a candidate biological pesticide for mosquito control.

背景目标:白纹伊蚊(Aedes albopictu)和库蚊(Culex pipiens pallens)是多种病毒的重要传播媒介,对化学杀虫剂具有抗药性。辛硫磷是一种控制城市蚊虫的选择性生物杀虫剂。本研究旨在揭示spinosad对蚊虫的亚致死效应,为蚊虫综合治理提供参考依据:方法:在实验室条件下,将白纹伊蚊和白线蝮幼虫暴露于不同浓度的菠乐杀中,测定菠乐杀对白纹伊蚊和白线蝮的毒性:暴露 72 小时后,白纹伊蚊和苍蝇幼虫的半致死浓度分别为 4.44×10-3 mg∙L-1 和 1.93×10-3 mg∙L-1 。亚致死浓度的松材线虫对白纹伊蚊和苍蝇幼虫、蛹、成虫和后代卵有许多负面影响,包括使其幼虫化蛹率显著降低 51.37% 和 58.47%,蛹长显著延长 21.43% 和 16.18%,雌虫展翅率显著降低 20.19% 和 14.89%,雄虫展翅率显著降低 3.84% 和 7.54%,雌虫体重显著降低 29.00%,雄虫体重显著降低 10.00%。此外,后代卵孵化率显著下降 25.71% 和 34.04%,卵期显著延长 14.42% 和 62.82%。对幼虫期、蛹出现率、雌虫咬率没有明显影响:这些结果表明,尖孢噻螨酮可能会对害虫种群动态产生重大影响,有望成为一种用于控制蚊虫的候选生物农药。
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引用次数: 0
Molecular identification and genetic diversity of biting midges (Diptera: Ceratopogonidae) in the tropical environment on Hainan Island, China. 中国海南岛热带环境中咬蚊(双翅目:Ceratopogonidae)的分子鉴定和遗传多样性。
IF 0.8 4区 医学 Q4 INFECTIOUS DISEASES Pub Date : 2024-07-07 DOI: 10.4103/JVBD.JVBD_100_23
Yaj Lu, Jie Su, Shi Cheng, Yax Hu, Qianf Xia

Background objectives: Biting midges are hematophagous arthropods responsible for zoonotic infectious diseases and have a wide distribution in temperate and tropical latitudes of the world.

Methods: The genomic DNA of midge samples was extracted using the Chelex method and the ITS1gene was amplified by PCR to identify the midge species via BLAST. The sequence characteristics and the genetic diversity were analyzed using ClustalOmega, DnaSP, Arlequin, PopART, and TCS software tool. The validity of the ITS1 gene as a DNA barcode marker was evaluated using DAMBE. The phylogenetic relationship was established in the MEGA software. The ABGD web determined the species boundary and the SDT software visualized the pairwise sequence comparisons.

Results: A total of 39 midge samples possessed the range from 364 to 429 bp of the ITS1 sequences. The midge samples were identified as Culicoides imicola, Culicoides oxystoma, Culicoides peregrinus, Culicoides jacobsoni, Forcipomyia peregrinator, and Culicoides fulvus, respectively. The ITS1 sequences had 288 conserved sites (60.25%), 167 variable sites (34.94%), 141 parsimony-informative sites (29.50%), and 26 singleton sites (5.44%), with a considerable sequence variation with a high haplotype diversity. Populations in Lingao, Haikou, Tunchang were relatively independent, with a low level of gene flow. A separate population of Forcipomyia genus in Danzhou was observed.

Interpretation conclusion: The biting midges in Hainan, a tropical island, had abundant genetic diversity. Timely surveillance is a crucial control measure for the spread of midge-borne diseases.

背景目标:咬蠓是一种食血节肢动物,是人畜共患传染病的罪魁祸首,广泛分布于世界温带和热带地区:方法:采用Chelex方法提取蠓样本的基因组DNA,并通过PCR扩增ITS1基因,通过BLAST鉴定蠓的种类。利用 ClustalOmega、DnaSP、Arlequin、PopART 和 TCS 软件工具分析了序列特征和遗传多样性。使用 DAMBE 评估了 ITS1 基因作为 DNA 条形码标记的有效性。在 MEGA 软件中建立了系统发生关系。ABGD 网络确定了物种边界,SDT 软件将成对序列比较可视化:共有 39 个蠓样本的 ITS1 序列范围在 364 至 429 bp 之间。这些蠓样本分别被鉴定为 Culicoides imicola、Culicoides oxystoma、Culicoides peregrinus、Culicoides jacobsoni、Forcipomyia peregrinator 和 Culicoides fulvus。ITS1序列有288个保守位点(60.25%)、167个可变位点(34.94%)、141个解析信息位点(29.50%)和26个单体位点(5.44%),序列变异较大,单体型多样性较高。临高、海口和屯昌的种群相对独立,基因流动水平较低。在儋州观察到一个独立的蝇属种群:海南作为热带岛屿,其咬蠓具有丰富的遗传多样性。及时监测是控制蠓媒疾病传播的关键措施。
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引用次数: 0
期刊
Journal of Vector Borne Diseases
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