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Editor's note on 'Preventing contamination of PCR-based multiplex assays including the use of a dedicated biosafety cabinet'. 关于 "防止基于 PCR 的多重检测污染,包括使用专用生物安全柜 "的编者按。
IF 2 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1093/lambio/ovae096
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引用次数: 0
Antibacterial effect of Cu2O/TiO2 visible-light photocatalytic composite on Xanthomonas campestris. Cu2O/TiO2 可见光光催化复合材料对野菜黄单胞菌的抗菌作用
IF 2 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1093/lambio/ovae087
Ying Jiang, Shiyu Zhou, Liuhong Chen, Yuning Huo, Guozheng Huang, Jianguo Cao, Xiling Dai

In this study, a Cu2O/TiO2 (CuTi) visible-light photocatalytic composite was employed for the treatment of Xanthomonas campestris and X. campestris-infected Brassica napus seedlings. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) values against X. campestris were determined to be 8 and 32 μg ml-1, respectively. Transmission electron microscopy analysis demonstrated a direct correlation between the extent of bacterial cell damage and the concentration of CuTi. Noteworthily, a bactericidal rate of 100% was achieved at a concentration of 150 μg ml-1 over a treatment duration of 120 min. Moreover, alterations in active oxidants and antioxidants, including reactive oxygen species, glutathione reductase, superoxide dismutase, peroxidase, and catalase within the bacterial cells, were examined to elucidate the underlying mechanism of inhibition by the CuTi. The B. napus infected by X. campestris was treated with CuTi, and the efficacy was validated through determination of plant resistance indexes. The combined data confirmed that the CuTi is characterized by a low dose, fast onset, good effect, and higher safety for killing X. campestris, and it is expected to be developed as an antimicrobial agent for vegetables.

本研究采用 Cu2O/TiO2 可见光光催化复合材料(CuTi)处理野油菜黄单胞菌和野油菜黄单胞菌感染的甘蓝菜苗。对野马黄单胞菌的最低抑菌浓度(MIC)和最低杀菌浓度(MBC)分别为 8 µg ml-¹ 和 32 µg ml-¹。透射电子显微镜分析表明,细菌细胞受损程度与 CuTi 的浓度直接相关。值得注意的是,在 120 分钟的处理时间内,150 微克/毫升-¹ 的浓度可达到 100% 的杀菌率。此外,还研究了细菌细胞内活性氧化剂和抗氧化剂(包括 ROS、GSH、GR、SOD、POD 和 CAT)的变化,以阐明 CuTi 抑菌的基本机制。用 CuTi 处理被野油菜 X. campestris 感染的甘蓝,并通过测定植物抗性指数来验证药效。综合数据证实,CuTi 具有剂量低、起效快、效果好、安全性高等特点,有望开发成蔬菜抗菌剂。
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引用次数: 0
Characterization of colistin-resistant carbapenemase producing Klebsiella pneumoniae in a river receiving wastewater treatment plant effluent. 接收污水处理厂污水的河流中产生耐大肠菌素碳青霉烯酶肺炎克雷伯氏菌的特征。
IF 2 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1093/lambio/ovae090
Pragyan Paramita Swain, Saubhagini Sahoo, Birasen Behera, Dibyajyoti Uttameswar Behera, Enketeswara Subudhi, Rajesh Kumar Sahoo

Genes conferring antibiotic resistance phenotype, particularly to last resort antibiotics, pose a significant concern globally. Wastewater treatment plant (WWTP) effluent substantially contributes to antibiotic resistance in receiving rivers, threatening human health. Globally, colistin- and carbapenem-resistant Klebsiella pneumoniae infections cause high morbidity and mortality. We investigated colistin-resistant carbapenemase-producing K. pneumoniae (Co-CRKP) isolates in Kathajodi river receiving WWTP effluent, their resistance genes, and pathogenic potential. Four isolates (Co-CRKP-7, Co-CRKP-8, Co-CRKP-10, and Co-CRKP-15) exhibited extensively drug-resistant (XDR) phenotype, harbouring blaTEM-1, blaCTX-M-15, blaNDM-5, and blaOXA-48 genes. Colistin resistance was attributed to mutations in the pmrA and pmrB genes. Virulence genes (fimH, mrkD, entB, iucA, iutA, and irp1), capsular serotypes (K1, K2) and biofilm formation in the isolates explicated their pathogenicity. Furthermore, Inc plasmid replicons (Y, FrepB, P, K/B, L/M, N, FIA, A/C, and FIB) indicated the dissemination potential of the resistance genes in Co-CRKP isolates. The multi-locus sequence typing showed that Co-CRKP-7 and Co-CRKP-8 belonged to ST42, while Co-CRKP-10 and Co-CRKP-15 were ST16 and ST231, respectively. These high-risk clones carrying multidrug resistance and virulence genes, implicated in numerous outbreaks, have spread worldwide. Our findings emphasize the necessity for effective treatment of hospital wastes to restrict the spread of clinical isolates into aquatic environments.

赋予抗生素耐药性表型的基因,尤其是对最后一种抗生素的耐药性,在全球范围内引起了极大的关注。污水处理厂(WWTP)排出的废水大大增加了受纳河流的抗生素耐药性,威胁人类健康。在全球范围内,耐大肠菌素和碳青霉烯类抗生素的肺炎克雷伯菌感染导致了很高的发病率和死亡率。我们调查了接受污水处理厂污水的卡塔约迪河中耐受大肠菌素碳青霉烯酶的肺炎克雷伯菌(Co-CRKP)分离株、它们的耐药基因和致病潜力。四个分离株(Co-CRKP-7、Co-CRKP-8、Co-CRKP-10 和 Co-CRKP-15)表现出广泛耐药(XDR)表型,携带 blaTEM-1、blaCTX-M-15、blaNDM-5 和 blaOXA-48 基因。对秋水仙素的耐药性归因于 pmrA 和 pmrB 基因的突变。分离物中的致病基因(fimH、mrkD、entB、iucA、iutA 和 irp1)、菌盖血清型(K1、K2)和生物膜的形成说明了它们的致病性。此外,Inc 质粒复制子(Y、FrepB、P、K/B、L/M、N、FIA、A/C 和 FIB)表明了耐药基因在 Co-CRKP 分离物中的传播潜力。多焦点序列分型(MLST)显示,Co-CRKP-7 和 Co-CRKP-8 属于 ST42,而 Co-CRKP-10 和 Co-CRKP-15 分别属于 ST16 和 ST231。这些携带多重耐药基因和毒力基因的高危克隆与多次疫情爆发有关,并已扩散到世界各地。我们的研究结果表明,有必要对医院废物进行有效处理,以限制临床分离物在水生环境中的传播。
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引用次数: 0
A One Health exploration of antimicrobial resistance in Escherichia coli originated from urban and rural lakes ecosystem. 源自城市和农村湖泊生态系统的大肠杆菌抗菌药耐药性的综合健康探索。
IF 2 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1093/lambio/ovae095
Priyanka Priyanka, Prem Raj Meena, Dharma Raj, Purnima Mishra, Anand Kumar Jha, K Siddaardha Duggirala, Akshay Dhanokar, Amit Kumar, Anuj Rana, Arvind Pratap Singh

Antimicrobial resistance (AMR) has become one of the most serious threats to One Health. Aquatic environments are an ideal non-clinical AMR reservoir and can act as a key battlefront for tackling the AMR. However, AMR data using the One Health approach remain scarce in aquatic environments worldwide. Here, we extensively assessed AMR in Escherichia coli isolated from urban and rural lake ecosystems using the One Health perspective. A total of 162 E. coli isolates obtained from lakes were tested against 25 antimicrobials using an in-vitro antimicrobial susceptibility testing method. A low (2%) to moderate (45%) drug resistance rate was found for all antimicrobials used in human/veterinary medicine or animal/plant agriculture. However, <80% E. coli isolates exhibited multidrug resistance (MDR) phenotype to highly important (amikacin, gentamicin, trimethoprim) or critically important (amoxicillin, ampicillin, colistin) drugs of both human and veterinary medicine. Of concern, >50% of E. coli isolates exhibited MDR to drugs used as last-resorts (chloramphenicol, colistin) or as frontline (nitrofurantoin, sulfamethoxazole, ampicillin, gentamicin) against E. coli infections. In conclusion, the presence of MDR E. coli strains in urban or rural lake ecosystems highlights their possible role as AMR reservoirs with potential One Health risks.

抗菌素耐药性(AMR)已成为 "人的健康 "面临的最严重威胁之一。水生环境是理想的非临床 AMR 储存库,可作为应对 AMR 的关键战场。然而,采用 "一体健康 "方法获得的全球水生环境 AMR 数据仍然很少。在此,我们从 "一体健康 "的角度出发,广泛评估了从城市和农村湖泊生态系统中分离出来的大肠杆菌的AMR情况。我们采用体外抗菌药敏感性测试方法,对从湖泊中分离的 162 株大肠杆菌进行了 25 种抗菌药的测试。结果发现,所有用于人类/兽医或动物/植物农业的抗菌素都具有低(2%)至中(45%)的耐药率。然而,50%的大肠杆菌分离物对作为最后手段(氯霉素、可乐定)或一线(硝基呋喃妥因、磺胺甲噁唑、氨苄西林、庆大霉素)治疗大肠杆菌感染的药物具有多重耐药性。总之,城市或农村湖泊生态系统中存在的 MDR 大肠杆菌菌株突显出它们可能是具有潜在 "一体健康 "风险的 AMR 库。
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引用次数: 0
Phenotypic and molecular characterization of vancomycin resistant enterococci from wild birds: first detection of a plasmid-borne vanC1 in Enterococcus faecalis. 野生鸟类中抗万古霉素肠球菌的表型和分子特征:首次在粪肠球菌中检测到质粒携带的 vanC1。
IF 2 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1093/lambio/ovae098
Yousra Hachem, Lydia Neila Djouadi, Anis Raddaoui, Fella Boukli-Hacene, Hanane Boumerdassi, Wafa Achour, Farida Nateche

Vancomycin-resistant enterococci (VRE) are a public health concern as they lead to therapeutic impasses and play a pivotal role in the dissemination of vancomycin resistance genes. As recent evidence suggests that wildlife can play a role in the dissemination of bacterial resistomes, this study explored the potential role of Algerian wild birds as a reservoir of VRE. A total of 222 cloacal and fecal samples were collected from various wild bird species and screened for VRE using a selective medium. Of the 47 isolated strains, 22 were identified as Enterococcus casseliflavus with the vanC2/C3 gene, 24 as Enterococcus gallinarum (19 carrying vanC1 and five carrying vanC2/C3), and one strain as Enterococcus faecalis with the vanC1 gene. Twenty-four (24) strains were multidrug-resistant with 61.7% resistant to rifampicin, while no resistance to teicoplanin, linezolid, and gentamicin was found. Additionally, 53.20% of the strains exhibited at least one virulence factor. To our knowledge, this study represents the first documentation of the vanC1 gene in E. faecalis isolated from wild birds. Furthermore, this gene was found to be carried by a conjugative plasmid, highlighting its ability to spread among bacterial populations and lead to the emergence of novel resistance phenotypes.

耐万古霉素肠球菌(VRE)是一个令人担忧的公共卫生问题,因为它们会导致治疗陷入僵局,并在万古霉素耐药基因的传播中发挥关键作用。最近有证据表明,野生动物在细菌耐药性基因组的传播中也扮演着重要角色,因此本研究探讨了阿尔及利亚野生鸟类作为 VRE 病毒库的潜在作用。研究人员从各种野生鸟类身上共采集了 222 份泄殖腔和粪便样本,并使用选择性培养基对其进行了 VRE 检测。在分离出的 47 株菌株中,22 株被鉴定为带有 vanC2/C3 基因的卡氏肠球菌,24 株被鉴定为加里纳氏肠球菌(19 株携带 vanC1 基因,5 株携带 vanC2/C3),1 株被鉴定为带有 vanC1 基因的粪肠球菌。24株菌株具有多重耐药性,其中61.7%对利福平具有耐药性,而对替考拉宁、利奈唑胺和庆大霉素没有耐药性。此外,53.20%的菌株表现出至少一种毒力因子。据我们所知,这项研究首次记录了从野生鸟类中分离出的粪肠球菌中的 vanC1 基因。此外,我们还发现该基因是由共轭质粒携带的,这凸显了该基因在细菌种群中的传播能力,并导致了新型耐药性表型的出现。
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引用次数: 0
Improving the medium composition for the production of the natural blue-violet pigment violacein by a new Janthinobacterium sp. isolate. 改进培养基成分,利用新分离的 Janthinobacterium sp.
IF 2 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1093/lambio/ovae091
Caroline Kie Ishimoto, Rodolfo Dantas Lima Junior, Simone Aparecida de Lima Scaramussa, Taicia Pacheco Fill, Valéria Maia Oliveira, Juliano Lemos Bicas

The interest in natural compounds has increased primarily due to their beneficial health and environmental aspects. However, natural sources of some compounds, such as bluish pigments, are limited, requiring the development of efficient processes to meet commercial demands. This study isolated a blue-violet bacterium from spoiled cooked rice and identified it as a potential new species of Janthinobacterium through 16S rDNA analysis. Ultra-high performance liquid chromatography-tandem mass spectrometry analyses confirmed that the blue-violet pigment violacein was responsible for the bluish color. In laboratory conditions, different carbon and nitrogen sources were evaluated in submerged culture media to enhance pigment production. Glycerol did not result in significant pigment production by this strain, as expected from previous reports. Instead, a culture medium composed of yeast extract and fructose yielded higher pigment production, reaching about 113.68 ± 16.68 mg l-1 after 120 h. This result provides crucial insights for future studies aiming for sustainable and commercially viable violacein production. Based on a bioeconomy concept, this approach has the potential to supply natural and economic bluish pigments for various industrial sectors, including pharmaceutical, cosmetic, and food.

人们对天然化合物的兴趣与日俱增,主要是因为它们有益于健康和环境。然而,某些化合物(如蓝色色素)的天然来源有限,需要开发高效的工艺来满足商业需求。本研究从变质的熟米饭中分离出一种蓝紫色细菌,并通过 16S rDNA 分析确定其为潜在的 Janthinobacterium 新物种。超高效液相色谱-质谱/质谱分析证实,蓝紫色素是造成米饭呈蓝色的原因。在实验室条件下,对浸没培养基中不同的碳源和氮源进行了评估,以提高色素产量。正如之前的报告所预期的那样,甘油并不能使该菌株产生大量色素。相反,由酵母提取物和果糖组成的培养基产生的色素产量更高,120 小时后达到约 113.68 ± 16.68 mg L-1。这一结果为今后旨在实现可持续的、商业上可行的长春花苷生产的研究提供了重要启示。基于生物经济的概念,这种方法有可能为制药、化妆品和食品等各个工业部门提供天然、经济的蓝色色素。
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引用次数: 0
More than just the gene: investigating expression using a non-native plasmid and host and its impact on resistance conferred by β-lactamase OXA-58 isolated from a hospital wastewater microbiome. 不仅仅是基因:研究使用非本地质粒和宿主的表达及其对从医院废水微生物组中分离出的β-内酰胺酶 OXA-58 所产生的抗药性的影响。
IF 2 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1093/lambio/ovae097
J Wu, T P Thompson, N H O'Connell, K McCracken, J Powell, B F Gilmore, C P Dunne, S A Kelly

With the escalation of hospital-acquired infections by multidrug resistant bacteria, understanding antibiotic resistance is of paramount importance. This study focuses on the β-lactamase gene, blaOXA-58, an important resistance determinant identified in a patient-facing hospital wastewater system. This study aimed to characterize the behaviour of the OXA-58 enzyme when expressed using a non-native plasmid and expression host. blaOXA-58 was cloned using a pET28a(+)/Escherichia coli BL21(DE3) expression system. Nitrocefin hydrolysis and antimicrobial susceptibility of OXA-58-producing cells were assessed against penicillin G, ampicillin, meropenem, and amoxicillin. blaOXA-58 conferred resistance to amoxicillin, penicillin G, and ampicillin, but not to meropenem. This was unexpected given OXA-58's annotation as a carbapenemase. The presence of meropenem also reduced nitrocefin hydrolysis, suggesting it acts as a competitive inhibitor of the OXA-58 enzyme. This study elucidates the phenotypic resistance conferred by an antimicrobial resistance gene (ARG) obtained from a clinically relevant setting and reveals that successful functional expression of ARGs is multifaceted. This study challenges the reliability of predicting antimicrobial resistance based solely on gene sequence alone, and serves as a reminder of the intricate interplay between genetics and structural factors in understanding resistance profiles across different host environments.

随着多重耐药菌引起的医院感染不断增加,了解抗生素耐药性至关重要。本研究的重点是β-内酰胺酶基因 blaOXA-58,它是在面向病人的医院污水系统中发现的一个重要耐药性决定因素。blaOXA-58 是利用 pET28a(+)/Escherichia coli BL21(DE3) 表达系统克隆的。评估了产生 OXA-58 的细胞对青霉素 G、氨苄西林、美罗培南和阿莫西林的亚硝基乙素水解作用和抗菌敏感性。鉴于 OXA-58 被注释为碳青霉烯酶,这一结果出乎意料。美罗培南的存在也减少了硝基蝶呤的水解,表明它是 OXA-58 酶的竞争性抑制剂。本研究阐明了从临床相关环境中获得的抗菌药耐药基因(ARG)赋予的表型耐药性,并揭示了 ARG 的成功功能表达是多方面的。这项研究对仅根据基因序列预测抗菌药耐药性的可靠性提出了挑战,并提醒人们在了解不同宿主环境的耐药性特征时,遗传学和结构因素之间错综复杂的相互作用。
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引用次数: 0
Integration of surface swab with optical microscopy for detection and quantification of bacterial cells from stainless-steel surfaces. 将表面拭子与光学显微镜相结合,用于检测和量化不锈钢表面的细菌细胞。
IF 2.4 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-17 DOI: 10.1093/lambio/ovae089
Yuzhen Zhang,Zili Gao,Lili He
Swab sampling is a common method for recovering microbes on various environmental surfaces. Its successful application for a specific target depends on the proper swab method and the following detection assay. Herein, we evaluated critical factors influencing surface swab sampling, aiming to achieve the optimal detection and quantification performance of optical detection for bacterial cells on stainless-steel surfaces. Our results showed the recovery rate of Salmonella enterica (SE1045) cells from the 10×10 cm2 stainless-steel surface reached up to 92.71±2.19% when using ammonia bicarbonate-moistened polyurethane foam swabs for gentle collection, followed by ultrasound-assisted release in NH4HCO3 solution. Among the six different foam swabs, the Puritan™ Sterile Large Foam Swab contributed the lowest background noise and highest recovery efficiency when integrated with the optical detection assay. Notably, our method exhibited a strong linear relationship (r2 = 0.9983) between the detected cell numbers and the theoretical number of SE1045 cells seeded on surfaces in the range of 104-107 CFU, with a limit of detection of 7.2×104 CFU 100 cm-2. This integration was completed within 2 hours, exhibiting the applicable potential in various settings.
拭子取样是在各种环境表面回收微生物的常用方法。针对特定目标的成功应用取决于正确的拭子方法和后续的检测方法。在此,我们评估了影响表面拭子取样的关键因素,旨在实现光学检测对不锈钢表面细菌细胞的最佳检测和定量性能。结果表明,使用碳酸氢氨湿润的聚氨酯泡沫拭子轻轻采集,然后在 NH4HCO3 溶液中超声辅助释放,10×10 cm2 不锈钢表面肠炎沙门氏菌(SE1045)细胞的回收率高达 92.71±2.19%。在六种不同的泡沫拭子中,Puritan™无菌大号泡沫拭子与光学检测分析法结合使用时,背景噪音最低,回收效率最高。值得注意的是,我们的方法在检测到的细胞数和表面上播种的 SE1045 细胞的理论数(104-107 CFU)之间表现出很强的线性关系(r2 = 0.9983),检测限为 7.2×104 CFU 100 cm-2。这一整合在 2 小时内完成,显示了在各种环境下的适用潜力。
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引用次数: 0
In vitro efficacy of aquaculture antimicrobials and genetic determinants of resistance in bacterial isolates from tropical aquaculture disease outbreaks. 水产养殖抗菌剂的体外药效和热带水产养殖疾病爆发中细菌分离物的抗药性遗传决定因素。
IF 2.4 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-13 DOI: 10.1093/lambio/ovae088
Sumithra T Gopakumar,KrupeshaSharma S Ramachandra,Suja Gangadharan,Anusree V Nair,Surya S Gayathri,Vishnu Prasad,Lailaja V Purakal,George J Chakkalakkal,Prasanna K Patil
Understanding the efficacy of antimicrobials against pathogens from clinical samples is critical for their responsible use. The manuscript presents in vitro efficacy and antimicrobial resistance (AMR) genes in seven species of fish pathogens from the disease outbreaks of Indian aquaculture against oxytetracycline, florfenicol, oxolinic acid, and enrofloxacin. In vitro efficacy was evaluated by minimum inhibitory concentration and minimum bactericidal concentration. The gene-specific PCR screened AMR genes against quinolones (qnrA, qnrB and qnrS) and tetracyclines (tetM, tetS, tetA, tetC, tetB, tetD, tetE, tetH, tetJ, tetG, and tetY). The results showed that Aeromonas veronii (45%) showed the maximum resistance phenotype followed by Streptococcus agalactiae (40%), Photobacterium damselae (15%), Vibrio parahaemolyticus (10%), and Vibrio vulnificus (5%). There was no resistance among Vibrio harveyi and Vibrio alginolyticus against the tested antimicrobials. The positive association between tetA, tetB, tetC, tetM, or a combination of these genes to oxytetracycline resistance and qnrS to quinolone resistance indicated their potential in surveillance studies. The prevalence of resistance phenotypes (16.43%) and evaluated AMR genes (2.65%) against aquaculture antimicrobials was low. The resistance phenotype pattern abundance was 0.143. All the isolates showed susceptibility to florfenicol. The results help with the appropriate drug selection against each species in aquaculture practices.
从临床样本中了解抗菌素对病原体的疗效对于负责任地使用抗菌素至关重要。该手稿介绍了印度水产养殖中暴发的七种鱼类病原体对土霉素、氟苯尼考、草酸和恩诺沙星的体外药效和抗菌药耐药性(AMR)基因。体外药效通过最小抑菌浓度和最小杀菌浓度进行评估。基因特异性 PCR 筛选了针对喹诺酮类(qnrA、qnrB 和 qnrS)和四环素类(tetM、tetS、tetA、tetC、tetB、tetD、tetE、tetH、tetJ、tetG 和 tetY)的 AMR 基因。结果显示,维罗尼单胞菌(45%)表现出最大的抗药性表型,其次是无乳链球菌(40%)、光杆菌(15%)、副溶血性弧菌(10%)和弧菌(5%)。哈维弧菌和藻溶弧菌对测试的抗菌素没有抗药性。tetA、tetB、tetC、tetM 或这些基因的组合与土霉素耐药性呈正相关,qnrS 与喹诺酮耐药性呈正相关,这表明它们在监测研究中具有潜力。水产养殖抗菌素的耐药性表型(16.43%)和评估的 AMR 基因(2.65%)的流行率较低。耐药性表型丰度为 0.143。所有分离菌株都对氟苯尼考有敏感性。这些结果有助于在水产养殖实践中针对每种鱼类选择适当的药物。
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引用次数: 0
Antimicrobial potential of Streptomyces sp. NP73 isolated from the forest soil of Northeast India against multi-drug resistant Escherichia coli. 从印度东北部森林土壤中分离出的链霉菌 NP73 对耐多药大肠杆菌的抗菌潜力。
IF 2.4 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-11 DOI: 10.1093/lambio/ovae086
Aditya Narayan Konwar,Surajit Basak,Kangkon Saikia,Shalini Gurumayum,Nitya Panthi,Jagat Chandra Borah,Debajit Thakur
This study reports the isolation and characterization of a Streptomyces sp. from soil, capable of producing bioactive secondary metabolites active against a variety of bacterial human pathogens. We targeted the antimicrobial activity against Escherichia coli ATCC-BAA 2469, a clinically relevant strain of bacteria harbouring resistance genes for carbapenems, extended spectrum beta-lactams, tetracyclines, fluoroquinones, etc. Preliminary screening using the spot inoculation technique identified Streptomyces sp. NP73 as the potent strain among the 74 isolated Actinomycetia strain. 16S rRNA gene and whole genome sequencing (WGS) confirmed its taxonomical identity and helped in the construction of the phylogenetic tree. WGS revealed the predicted pathways and biosynthetic gene clusters responsible for producing various types of antibiotics including the isolated compound. Bioactivity guided fractionation and chemical characterization of the active fraction, carried out using liquid chromatography, Gas chromatography-mass spectrometry, Infra-red spectroscopy, and Nuclear magnetic resonance spectroscopy, led to the tentative identification of the active compound as Pyrrolo[1,2-a] pyrazine-1,4-dione, hexahydro-, a diketopiperazine molecule. This compound exhibited excellent antimicrobial and anti-biofilm properties against Escherichia coli ATCC-BAA 2469 with an MIC value of 15.64 µg mL-1, and the low cytotoxicity of the compound identified in this study provides hope for future drug development.
本研究报告从土壤中分离并鉴定了一种链霉菌,它能够产生具有生物活性的次级代谢产物,对多种细菌性人类病原体具有活性。我们以大肠埃希氏菌 ATCC-BAA 2469 为抗菌对象,该菌株是一种临床相关菌株,对碳青霉烯类、广谱β-内酰胺类、四环素类、氟喹诺酮类等具有耐药基因。通过点接种技术进行初步筛选,发现链霉菌 NP73 是 74 株分离放线菌中的强效菌株。16S rRNA 基因和全基因组测序(WGS)证实了其分类学身份,并帮助构建了系统发生树。WGS 揭示了预测的生产各类抗生素(包括所分离的化合物)的途径和生物合成基因簇。利用液相色谱法、气相色谱-质谱法、红外光谱法和核磁共振光谱法对活性组分进行了生物活性引导分馏和化学特征鉴定,最终初步确定活性化合物为吡咯并[1,2-a] 吡嗪-1,4-二酮,六氢,一种二酮哌嗪分子。该化合物对大肠杆菌 ATCC-BAA 2469 具有极佳的抗菌和抗生物膜特性,其 MIC 值为 15.64 µg mL-1。
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引用次数: 0
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Letters in Applied Microbiology
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