Purpose: The purpose of this study is to develop a method for selecting uniform wave vectors for double diffusion encoding (DDE) to improve the accuracy and reliability of diffusion measurements.
Methods: The method relies on identifying orthogonal wave vectors with rotations, and representing these rotations as points on a three-dimensional sphere in four dimensions using quaternions. This enables an electrostatic repulsion algorithm to achieve a uniform distribution of these points. The optimal points are then converted back into orthogonal wave vectors (or rotations).
Results: The method was validated by comparing the distribution of directions to those generated by uniform sampling and by evaluating the error in the powder-averaged signal for various models. Our results demonstrate that the electrostatic repulsion approach effectively achieves a uniform distribution of wave vectors.
Conclusion: The proposed method provides a systematic way to generate uniform diffusion directions suitable, for example, for DDE, enhancing the precision of diffusion measurements and reducing potential bias in experimental results. The method is also capable of generating uniform sets of B-tensors, and is thus applicable for general free waveform encoding.
{"title":"Isotropic sampling of tensor-encoded diffusion MRI.","authors":"Sune Nørhøj Jespersen","doi":"10.1002/mrm.30404","DOIUrl":"https://doi.org/10.1002/mrm.30404","url":null,"abstract":"<p><strong>Purpose: </strong>The purpose of this study is to develop a method for selecting uniform wave vectors for double diffusion encoding (DDE) to improve the accuracy and reliability of diffusion measurements.</p><p><strong>Methods: </strong>The method relies on identifying orthogonal wave vectors with rotations, and representing these rotations as points on a three-dimensional sphere in four dimensions using quaternions. This enables an electrostatic repulsion algorithm to achieve a uniform distribution of these points. The optimal points are then converted back into orthogonal wave vectors (or rotations).</p><p><strong>Results: </strong>The method was validated by comparing the distribution of directions to those generated by uniform sampling and by evaluating the error in the powder-averaged signal for various models. Our results demonstrate that the electrostatic repulsion approach effectively achieves a uniform distribution of wave vectors.</p><p><strong>Conclusion: </strong>The proposed method provides a systematic way to generate uniform diffusion directions suitable, for example, for DDE, enhancing the precision of diffusion measurements and reducing potential bias in experimental results. The method is also capable of generating uniform sets of B-tensors, and is thus applicable for general free waveform encoding.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Peter van Gelderen, Yicun Wang, Jacco A de Zwart, Jeff H Duyn
Purpose: To quantify T2 relaxation in the brain at 3 T and 7 T to study its field dependence and correlation with iron content, and to investigate whether iron can be separated from other sources of T2 relaxation based on this field dependence.
Methods: Nine subjects were scanned at both field strengths with the same acquisition technique, which used multiple gradient-echo sampling of a spin echo. This allowed for separation of T2 relaxation from static dephasing by B0 field inhomogeneities and the effects of radiofrequency refocusing imperfections. The average relaxation rates (R2 = 1/T2) in multiple regions of interest in the brain were fitted with a model linear in B0 and correlated with literature iron values.
Results: The relationship between the R2 values at the two field strengths appeared to be linear over all regions of interest. The R2 values (in s-1) in the regions of interest for which both an iron and a lipid mass fraction have been documented in the literature were fitted as , where and indicate the putative mass fractions of iron and lipid.
Conclusion: The R2 relaxation rate is well described by a constant plus a term linear in B0, with both iron and lipid content contributing to the slope. This indicates that the contributions of lipid and iron to R2 cannot be separated based solely on the field dependence of R2 in the field range of 3-7 T.
{"title":"Dependence of brain-tissue R<sub>2</sub> on MRI field strength.","authors":"Peter van Gelderen, Yicun Wang, Jacco A de Zwart, Jeff H Duyn","doi":"10.1002/mrm.30400","DOIUrl":"https://doi.org/10.1002/mrm.30400","url":null,"abstract":"<p><strong>Purpose: </strong>To quantify T<sub>2</sub> relaxation in the brain at 3 T and 7 T to study its field dependence and correlation with iron content, and to investigate whether iron can be separated from other sources of T<sub>2</sub> relaxation based on this field dependence.</p><p><strong>Methods: </strong>Nine subjects were scanned at both field strengths with the same acquisition technique, which used multiple gradient-echo sampling of a spin echo. This allowed for separation of T<sub>2</sub> relaxation from static dephasing by B<sub>0</sub> field inhomogeneities and the effects of radiofrequency refocusing imperfections. The average relaxation rates (R<sub>2</sub> = 1/T<sub>2</sub>) in multiple regions of interest in the brain were fitted with a model linear in B<sub>0</sub> and correlated with literature iron values.</p><p><strong>Results: </strong>The relationship between the R<sub>2</sub> values at the two field strengths appeared to be linear over all regions of interest. The R<sub>2</sub> values (in s<sup>-1</sup>) in the regions of interest for which both an iron and a lipid mass fraction have been documented in the literature were fitted as <math> <semantics> <mrow><msub><mi>R</mi> <mn>2</mn></msub> <mo>=</mo> <mn>9</mn> <mo>+</mo> <mfenced><mrow><mn>0.9</mn> <mo>+</mo> <mn>2</mn> <mo>·</mo> <msup><mn>10</mn> <mn>4</mn></msup> <mrow><mo>[</mo> <mi>Fe</mi> <mo>]</mo></mrow> <mo>+</mo> <mn>5.7</mn> <mrow><mo>[</mo> <mtext>lipid</mtext> <mo>]</mo></mrow> </mrow> </mfenced> <mo>·</mo> <msub><mi>B</mi> <mn>0</mn></msub> </mrow> <annotation>$$ {mathrm{R}}_2=9+left(0.9+2cdotp {10}^4left[mathrm{Fe}right]+5.7left[mathrm{lipid}right]right)cdotp {mathrm{B}}_0 $$</annotation></semantics> </math> , where <math> <semantics> <mrow><mrow><mo>[</mo> <mi>Fe</mi> <mo>]</mo></mrow> </mrow> <annotation>$$ left[mathrm{Fe}right] $$</annotation></semantics> </math> and <math> <semantics> <mrow><mrow><mo>[</mo> <mtext>lipid</mtext> <mo>]</mo></mrow> </mrow> <annotation>$$ left[mathrm{lipid}right] $$</annotation></semantics> </math> indicate the putative mass fractions of iron and lipid.</p><p><strong>Conclusion: </strong>The R<sub>2</sub> relaxation rate is well described by a constant plus a term linear in B<sub>0</sub>, with both iron and lipid content contributing to the slope. This indicates that the contributions of lipid and iron to R<sub>2</sub> cannot be separated based solely on the field dependence of R<sub>2</sub> in the field range of 3-7 T.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837178","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aiman Mahmoud, Raphael Tomi-Tricot, David Leitão, Philippa Bridgen, Anthony N Price, Alena Uus, Arnaud Boutillon, Andrew J Lawrence, Daniel Cromb, Paul Cawley, Maria Deprez, Enrico De Vita, Sharon L Giles, Mary A Rutherford, A David Edwards, Joseph V Hajnal, Tomoki Arichi, Shaihan J Malik
Purpose: To determine the expected range of NMR relaxation times (T1 and T2) in the neonatal brain at 7 T.
Methods: Data were acquired in a total of 40 examinations on infants in natural sleep. The cohort included 34 unique subjects with postmenstrual age range between 33 and 52 weeks and contained a mix of healthy individuals and those with clinical concerns. Single-slice T1 and T2 mapping protocols were used to provide measurements in white matter, cortex, cerebellum, and deep gray matter. Automatic image segmentation of a separate T2-weighted brain volume was used to define regions of interest for analysis.
Results: Linear regression was used to estimate relaxation times at term equivalent age (40 weeks postmenstrual age). with 95% confidence intervals was measured to be 2933 [2893, 2972] ms in white matter; 2653 [2604, 2701] ms in cerebellum; and 2486 [2439, 2532] ms in basal ganglia. was estimated as 119 [116, 121] ms in white matter, 99 [96, 102] ms in cerebellum, and 90 [89, 92] ms in basal ganglia. Most tissue-relaxation times showed a significant negative correlation with postmenstrual age, with the strongest correlation seen in cerebellum.
Conclusions: We describe neonatal brain tissue and age-specific T1 and T2 relaxation values at 7 T. The presented values differ substantially from both adult values at 7 T and neonate values measured at lower field strengths, and will be essential for pulse-sequence optimization for neonatal studies.
目的:确定新生儿7 T时脑核磁共振弛豫时间(T1和T2)的预期范围。方法:对40例处于自然睡眠状态的婴儿进行检查。该队列包括34名月经后年龄在33至52周之间的独特受试者,其中包括健康个体和有临床问题的个体。单片T1和T2制图方案提供白质、皮质、小脑和深部灰质的测量。使用单独的t2加权脑体积的自动图像分割来定义感兴趣的区域进行分析。结果:采用线性回归估计足月龄(经后40周)松弛时间。T 140周$$ {T}_1^{40 wk} $$与95% confidence intervals was measured to be 2933 [2893, 2972] ms in white matter; 2653 [2604, 2701] ms in cerebellum; and 2486 [2439, 2532] ms in basal ganglia. T 2 40 wk $$ {T}_2^{40 wk} $$ was estimated as 119 [116, 121] ms in white matter, 99 [96, 102] ms in cerebellum, and 90 [89, 92] ms in basal ganglia. Most tissue-relaxation times showed a significant negative correlation with postmenstrual age, with the strongest correlation seen in cerebellum.Conclusions: We describe neonatal brain tissue and age-specific T1 and T2 relaxation values at 7 T. The presented values differ substantially from both adult values at 7 T and neonate values measured at lower field strengths, and will be essential for pulse-sequence optimization for neonatal studies.
{"title":"T<sub>1</sub> and T<sub>2</sub> measurements of the neonatal brain at 7 T.","authors":"Aiman Mahmoud, Raphael Tomi-Tricot, David Leitão, Philippa Bridgen, Anthony N Price, Alena Uus, Arnaud Boutillon, Andrew J Lawrence, Daniel Cromb, Paul Cawley, Maria Deprez, Enrico De Vita, Sharon L Giles, Mary A Rutherford, A David Edwards, Joseph V Hajnal, Tomoki Arichi, Shaihan J Malik","doi":"10.1002/mrm.30403","DOIUrl":"10.1002/mrm.30403","url":null,"abstract":"<p><strong>Purpose: </strong>To determine the expected range of NMR relaxation times (T<sub>1</sub> and T<sub>2</sub>) in the neonatal brain at 7 T.</p><p><strong>Methods: </strong>Data were acquired in a total of 40 examinations on infants in natural sleep. The cohort included 34 unique subjects with postmenstrual age range between 33 and 52 weeks and contained a mix of healthy individuals and those with clinical concerns. Single-slice T<sub>1</sub> and T<sub>2</sub> mapping protocols were used to provide measurements in white matter, cortex, cerebellum, and deep gray matter. Automatic image segmentation of a separate T<sub>2</sub>-weighted brain volume was used to define regions of interest for analysis.</p><p><strong>Results: </strong>Linear regression was used to estimate relaxation times at term equivalent age (40 weeks postmenstrual age). <math> <semantics> <mrow><msubsup><mi>T</mi> <mn>1</mn> <mrow><mn>40</mn> <mi>wk</mi></mrow> </msubsup> </mrow> <annotation>$$ {T}_1^{40 wk} $$</annotation></semantics> </math> with 95% confidence intervals was measured to be 2933 [2893, 2972] ms in white matter; 2653 [2604, 2701] ms in cerebellum; and 2486 [2439, 2532] ms in basal ganglia. <math> <semantics> <mrow><msubsup><mi>T</mi> <mn>2</mn> <mrow><mn>40</mn> <mi>wk</mi></mrow> </msubsup> </mrow> <annotation>$$ {T}_2^{40 wk} $$</annotation></semantics> </math> was estimated as 119 [116, 121] ms in white matter, 99 [96, 102] ms in cerebellum, and 90 [89, 92] ms in basal ganglia. Most tissue-relaxation times showed a significant negative correlation with postmenstrual age, with the strongest correlation seen in cerebellum.</p><p><strong>Conclusions: </strong>We describe neonatal brain tissue and age-specific T<sub>1</sub> and T<sub>2</sub> relaxation values at 7 T. The presented values differ substantially from both adult values at 7 T and neonate values measured at lower field strengths, and will be essential for pulse-sequence optimization for neonatal studies.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7617262/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142824297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xavier Sieber, Ludovica Romanin, Jessica A M Bastiaansen, Christopher W Roy, Jérôme Yerly, Daniel Wenz, Jonas Richiardi, Matthias Stuber, Ruud B van Heeswijk
Purpose: To implement a flexible framework, named HydrOptiFrame, for the design and optimization of time-efficient water-excitation (WE) RF pulses using B-spline interpolation, and to characterize their lipid suppression performance.
Methods: An evolutionary optimization algorithm was used to design WE RF pulses. The algorithm minimizes a composite loss function that quantifies the fat-water contrast using Bloch equation simulations. In a first study, B-spline interpolated optimized (BSIO) pulses designed with HydrOptiFrame with durations of 1 and 0.76 ms were generated for 3 T and characterized in healthy volunteers' knees. The femoral bone marrow SNR was compared to that obtained with to 1-1 WE and lipid insensitive binomial off resonant excitation (LIBRE) pulses. In a second study, in the heart at 1.5 T, the water-fat contrast ratio and coronary artery vessel length obtained with a 2.56 ms BSIO pulse was compared to 1-1 WE and LIBRE pulses in free-running cardiovascular MR.
Results: The 1 ms BSIO pulse resulted in higher fat suppression and lower contrast ratio (CR) in the bone marrow than the state-of-the-art pulses (4.1 ± 0.2 vs. 4.7 ± 0.4 and 4.4 ± 0.3 for the BSIO, the 1-1 WE and LIBRE respectively, p < 0.05 vs. both) at 3 T. At 1.5 T, the BSIO pulse resulted in a higher blood-epicardial fat CR (3.8 ± 1.3 vs. 1.6 ± 0.6 and 2.4 ± 1.1 for the BSIO, 1-1 WE and LIBRE, respectively, p < 0.05 vs. both) and longer traceable left coronary artery vessel length (8.7 ± 1.4 cm vs. 7.0 ± 1.0 cm [p = 0.04] and 7.5 ± 1.2 cm [p = 0.09]).
Conclusion: The HydrOptiFrame framework offers a new opportunity to design WE RF pulses that are robust to B0 inhomogeneity at multiple magnetic field strengths and for variable RF pulse durations.
目的:采用一种名为HydrOptiFrame的灵活框架,利用B-样条插值法设计和优化具有时间效率的水激发(WE)射频脉冲,并鉴定其脂质抑制性能:方法:采用进化优化算法设计水激发射频脉冲。该算法通过布洛赫方程模拟,最小化量化脂水对比度的复合损失函数。在第一项研究中,使用 HydrOptiFrame 设计了持续时间为 1 和 0.76 毫秒的 B-样条插值优化(BSIO)脉冲,用于 3 T,并在健康志愿者膝关节中进行了表征。股骨髓信噪比与 1-1 WE 脉冲和脂质不敏感二叉离谐激励(LIBRE)脉冲的信噪比进行了比较。在第二项研究中,在 1.5 T 的心脏中,在自由运行的心血管磁共振中,将 2.56 毫秒 BSIO 脉冲与 1-1 WE 和 LIBRE 脉冲获得的水脂对比度和冠状动脉血管长度进行了比较:结果:与最先进的脉冲相比,1 毫秒 BSIO 脉冲在骨髓中的脂肪抑制更高,对比度 (CR) 更低(BSIO、1-1 WE 和 LIBRE 分别为 4.1 ± 0.2 vs. 4.7 ± 0.4 和 4.4 ± 0.3,p 结论:HydrOptiFrame框架为设计WE射频脉冲提供了一个新的机会,这种脉冲在多种磁场强度和可变射频脉冲持续时间下对B0不均匀性都很稳健。
{"title":"A flexible framework for the design and optimization of water-excitation RF pulses using B-spline interpolation.","authors":"Xavier Sieber, Ludovica Romanin, Jessica A M Bastiaansen, Christopher W Roy, Jérôme Yerly, Daniel Wenz, Jonas Richiardi, Matthias Stuber, Ruud B van Heeswijk","doi":"10.1002/mrm.30390","DOIUrl":"https://doi.org/10.1002/mrm.30390","url":null,"abstract":"<p><strong>Purpose: </strong>To implement a flexible framework, named HydrOptiFrame, for the design and optimization of time-efficient water-excitation (WE) RF pulses using B-spline interpolation, and to characterize their lipid suppression performance.</p><p><strong>Methods: </strong>An evolutionary optimization algorithm was used to design WE RF pulses. The algorithm minimizes a composite loss function that quantifies the fat-water contrast using Bloch equation simulations. In a first study, B-spline interpolated optimized (BSIO) pulses designed with HydrOptiFrame with durations of 1 and 0.76 ms were generated for 3 T and characterized in healthy volunteers' knees. The femoral bone marrow SNR was compared to that obtained with to 1-1 WE and lipid insensitive binomial off resonant excitation (LIBRE) pulses. In a second study, in the heart at 1.5 T, the water-fat contrast ratio and coronary artery vessel length obtained with a 2.56 ms BSIO pulse was compared to 1-1 WE and LIBRE pulses in free-running cardiovascular MR.</p><p><strong>Results: </strong>The 1 ms BSIO pulse resulted in higher fat suppression and lower contrast ratio (CR) in the bone marrow than the state-of-the-art pulses (4.1 ± 0.2 vs. 4.7 ± 0.4 and 4.4 ± 0.3 for the BSIO, the 1-1 WE and LIBRE respectively, p < 0.05 vs. both) at 3 T. At 1.5 T, the BSIO pulse resulted in a higher blood-epicardial fat CR (3.8 ± 1.3 vs. 1.6 ± 0.6 and 2.4 ± 1.1 for the BSIO, 1-1 WE and LIBRE, respectively, p < 0.05 vs. both) and longer traceable left coronary artery vessel length (8.7 ± 1.4 cm vs. 7.0 ± 1.0 cm [p = 0.04] and 7.5 ± 1.2 cm [p = 0.09]).</p><p><strong>Conclusion: </strong>The HydrOptiFrame framework offers a new opportunity to design WE RF pulses that are robust to B<sub>0</sub> inhomogeneity at multiple magnetic field strengths and for variable RF pulse durations.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142801313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Qingle Kong, Jiayu Xiao, Mark S Shiroishi, Nasim Sheikh-Bahaei, Steven Y Cen, Kasra Khatibi, William J Mack, Jason C Ye, Paul E Kim, Xiaoming Bi, David Saloner, Qi Yang, Eric Chang, Zhaoyang Fan
Purpose: To develop and validate a 3D turbo spin-echo (TSE)-compatible approach to enhancing black-blood (BB) effects while preserving T1 weighting and overall SNR.
Methods: Following the excitation RF pulse, a 180° RF pulse sandwiched by a pair of flow-sensitive dephasing (FSD) gradient pulses in the phase- (y) and partition-encoding (z) directions, respectively, is added. The polarity of FSD gradients in z direction is toggled every TR, achieving an interleaved FSD (iFSD) configuration in y-z plane. The technique was optimized and evaluated in 18 healthy volunteers and 32 patients with neurovascular disease or brain metastases. Comparisons were made among TSE with and without one of BB preparations: iFSD, delay alternating with nutation for tailored excitation, and motion-sensitized driven equilibrium.
Results: iFSD-TSE achieved the best blood flow suppression indicated by venous sinus SNR and parenchyma-to-sinus contrast-to-noise ratio (CNR). iFSD-TSE yielded slightly lower white matter SNR (106.6 ± 32.9) and white-to-gray matter CNR (27.3 ± 8.1) compared to TSE (111.4 ± 31.5 and 28.6 ± 8.8), which were significantly higher than those of delay alternating with nutation for tailored excitation-prepared TSE (84.3 ± 25.0 and 16.8 ± 4.8) and motion-sensitized driven equilibrium-prepared TSE (77.3 ± 26.6 and 15.9 ± 5.3). At the neurovascular wall lesions, iFSD-TSE yielded the highest wall-to-lumen CNR among the three sequences with a BB preparation, all of which significantly outperformed TSE. iFSD-TSE effectively suppressed slow-flow artifacts that otherwise mimicked an atherosclerotic lesion or strongly contrast-enhancing vessel wall. In diagnosing brain metastases, iFSD allowed for highest inter-reader agreement (κ 0.75) and shortest reading time.
Conclusion: iFSD is a promising approach compatible with 3D TSE for robust blood flow suppression and preserved T1 weighting and overall SNR.
{"title":"Interleaved flow-sensitive dephasing (iFSD): Toward enhanced blood flow suppression and preserved T<sub>1</sub> weighting and overall signals in 3D TSE-based neuroimaging.","authors":"Qingle Kong, Jiayu Xiao, Mark S Shiroishi, Nasim Sheikh-Bahaei, Steven Y Cen, Kasra Khatibi, William J Mack, Jason C Ye, Paul E Kim, Xiaoming Bi, David Saloner, Qi Yang, Eric Chang, Zhaoyang Fan","doi":"10.1002/mrm.30391","DOIUrl":"https://doi.org/10.1002/mrm.30391","url":null,"abstract":"<p><strong>Purpose: </strong>To develop and validate a 3D turbo spin-echo (TSE)-compatible approach to enhancing black-blood (BB) effects while preserving T<sub>1</sub> weighting and overall SNR.</p><p><strong>Methods: </strong>Following the excitation RF pulse, a 180° RF pulse sandwiched by a pair of flow-sensitive dephasing (FSD) gradient pulses in the phase- (y) and partition-encoding (z) directions, respectively, is added. The polarity of FSD gradients in z direction is toggled every TR, achieving an interleaved FSD (iFSD) configuration in y-z plane. The technique was optimized and evaluated in 18 healthy volunteers and 32 patients with neurovascular disease or brain metastases. Comparisons were made among TSE with and without one of BB preparations: iFSD, delay alternating with nutation for tailored excitation, and motion-sensitized driven equilibrium.</p><p><strong>Results: </strong>iFSD-TSE achieved the best blood flow suppression indicated by venous sinus SNR and parenchyma-to-sinus contrast-to-noise ratio (CNR). iFSD-TSE yielded slightly lower white matter SNR (106.6 ± 32.9) and white-to-gray matter CNR (27.3 ± 8.1) compared to TSE (111.4 ± 31.5 and 28.6 ± 8.8), which were significantly higher than those of delay alternating with nutation for tailored excitation-prepared TSE (84.3 ± 25.0 and 16.8 ± 4.8) and motion-sensitized driven equilibrium-prepared TSE (77.3 ± 26.6 and 15.9 ± 5.3). At the neurovascular wall lesions, iFSD-TSE yielded the highest wall-to-lumen CNR among the three sequences with a BB preparation, all of which significantly outperformed TSE. iFSD-TSE effectively suppressed slow-flow artifacts that otherwise mimicked an atherosclerotic lesion or strongly contrast-enhancing vessel wall. In diagnosing brain metastases, iFSD allowed for highest inter-reader agreement (κ 0.75) and shortest reading time.</p><p><strong>Conclusion: </strong>iFSD is a promising approach compatible with 3D TSE for robust blood flow suppression and preserved T<sub>1</sub> weighting and overall SNR.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142794977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Julia Stabinska, Thomas Andreas Thiel, Helge Jörn Zöllner, Thomas Benkert, Hans-Jörg Wittsack, Alexandra Ljimani
Purpose: To characterize the diffusion time (Δeff) dependence of apparent diffusion coefficient (ADC) and intravoxel incoherent motion-related parameters in the human kidney at 3 T.
Methods: Sixteen healthy volunteers underwent an MRI examination at 3 T including diffusion-weighted imaging at different Δeff ranging from 24.1 to 104.1 ms. The extended mono-exponential ADC and intravoxel incoherent motion models were fitted to the data for each Δeff and the medullary and cortical ADC, (pseudo-)diffusion coefficients (D* and D) and flow-related signal fraction (f) were calculated.
Results: When all the data were used for fitting, a significant trend toward higher ADC with increasing Δeff was observed between 24.1 and 104.1 ms (median and interquartile range: 2.38 [2.19, 2.47] to 2.84 [2.36, 2.90] × 10-3 mm2/s for cortex, and 2.28 [2.18, 2.37] to 2.82 [2.58, 3.11] × 10-3 mm2/s for medulla). In contrast, no significant differences in ADC were found when only the data acquired at b-values higher than 200 s/mm2 were used for fitting. When the intravoxel incoherent motion model was applied, cortical and medullary f increased significantly (cortex: 0.21 [0.15 0.27] to 0.37 [0.32, 0.49] × 10-3 mm2/s; medulla: 0.15 [0.13 0.29] to 0.41 [0.36 0.51] × 10-3 mm2/s). No significant changes in cortical and medullary D and D* were observed as diffusion time increased.
Conclusion: Renal perfusion and tubular flow substantially contribute to the observed increase in ADC over a wide range of Δeff between 24 and 104 ms.
{"title":"Investigation of diffusion time dependence of apparent diffusion coefficient and intravoxel incoherent motion parameters in the human kidney.","authors":"Julia Stabinska, Thomas Andreas Thiel, Helge Jörn Zöllner, Thomas Benkert, Hans-Jörg Wittsack, Alexandra Ljimani","doi":"10.1002/mrm.30396","DOIUrl":"https://doi.org/10.1002/mrm.30396","url":null,"abstract":"<p><strong>Purpose: </strong>To characterize the diffusion time (Δ<sub>eff</sub>) dependence of apparent diffusion coefficient (ADC) and intravoxel incoherent motion-related parameters in the human kidney at 3 T.</p><p><strong>Methods: </strong>Sixteen healthy volunteers underwent an MRI examination at 3 T including diffusion-weighted imaging at different Δ<sub>eff</sub> ranging from 24.1 to 104.1 ms. The extended mono-exponential ADC and intravoxel incoherent motion models were fitted to the data for each Δ<sub>eff</sub> and the medullary and cortical ADC, (pseudo-)diffusion coefficients (D* and D) and flow-related signal fraction (f) were calculated.</p><p><strong>Results: </strong>When all the data were used for fitting, a significant trend toward higher ADC with increasing Δ<sub>eff</sub> was observed between 24.1 and 104.1 ms (median and interquartile range: 2.38 [2.19, 2.47] to 2.84 [2.36, 2.90] × 10<sup>-3</sup> mm<sup>2</sup>/s for cortex, and 2.28 [2.18, 2.37] to 2.82 [2.58, 3.11] × 10<sup>-3</sup> mm<sup>2</sup>/s for medulla). In contrast, no significant differences in ADC were found when only the data acquired at b-values higher than 200 s/mm<sup>2</sup> were used for fitting. When the intravoxel incoherent motion model was applied, cortical and medullary f increased significantly (cortex: 0.21 [0.15 0.27] to 0.37 [0.32, 0.49] × 10<sup>-3</sup> mm<sup>2</sup>/s; medulla: 0.15 [0.13 0.29] to 0.41 [0.36 0.51] × 10<sup>-3</sup> mm<sup>2</sup>/s). No significant changes in cortical and medullary D and D* were observed as diffusion time increased.</p><p><strong>Conclusion: </strong>Renal perfusion and tubular flow substantially contribute to the observed increase in ADC over a wide range of Δ<sub>eff</sub> between 24 and 104 ms.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142785719","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xiaoling Liu, Haidong Li, Hongchuang Li, Ming Zhang, Yu Zheng, Xiuchao Zhao, Lei Shi, Yeqing Han, Fumin Guo, Xin Zhou
Purpose: To demonstrate the feasibility of measuring pulmonary hematocrit (Hct) in blood in vivo using oscillation of hyperpolarized 129Xe MR signals and its potential for disease assessment in animal models.
Methods: Hyperpolarized 129Xe dynamic MR spectroscopy was performed on 10 anemia model rats and 10 control rats. A concise model based on hyperpolarized 129Xe MR signal oscillations was built for calculating pulmonary Hct. Blood tests and chemical shift saturation recovery were conducted on each rat to obtain Hct. Correlations of Hct obtained from different methods were analyzed using SPSS 22.0.
Results: Hct measurements were strongly correlated with blood test (Spearman correlation coefficient r = 0.871, p < 0.001) and chemical shift saturation recovery measurements (r = 0.956, p < 0.001). Hct was 0.198 ± 0.054 for the anemic cohort and 0.457 ± 0.039 for the control group (p < 0.001).
Conclusion: We developed an approach that provided a way to quantify changes in pulmonary Hct using oscillations of hyperpolarized 129Xe signals. This method shows promise for noninvasive pulmonary Hct assessment and disease evaluation.
{"title":"Measurement of pulmonary hematocrit using oscillation of hyperpolarized <sup>129</sup>Xe MR signals in blood.","authors":"Xiaoling Liu, Haidong Li, Hongchuang Li, Ming Zhang, Yu Zheng, Xiuchao Zhao, Lei Shi, Yeqing Han, Fumin Guo, Xin Zhou","doi":"10.1002/mrm.30398","DOIUrl":"https://doi.org/10.1002/mrm.30398","url":null,"abstract":"<p><strong>Purpose: </strong>To demonstrate the feasibility of measuring pulmonary hematocrit (Hct) in blood in vivo using oscillation of hyperpolarized <sup>129</sup>Xe MR signals and its potential for disease assessment in animal models.</p><p><strong>Methods: </strong>Hyperpolarized <sup>129</sup>Xe dynamic MR spectroscopy was performed on 10 anemia model rats and 10 control rats. A concise model based on hyperpolarized <sup>129</sup>Xe MR signal oscillations was built for calculating pulmonary Hct. Blood tests and chemical shift saturation recovery were conducted on each rat to obtain Hct. Correlations of Hct obtained from different methods were analyzed using SPSS 22.0.</p><p><strong>Results: </strong>Hct measurements were strongly correlated with blood test (Spearman correlation coefficient r = 0.871, p < 0.001) and chemical shift saturation recovery measurements (r = 0.956, p < 0.001). Hct was 0.198 ± 0.054 for the anemic cohort and 0.457 ± 0.039 for the control group (p < 0.001).</p><p><strong>Conclusion: </strong>We developed an approach that provided a way to quantify changes in pulmonary Hct using oscillations of hyperpolarized <sup>129</sup>Xe signals. This method shows promise for noninvasive pulmonary Hct assessment and disease evaluation.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142785804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Suneeta Chaudhary, Elizabeth G Lane, Allison Levy, Anika McGrath, Eralda Mema, Melissa Reichmann, Katerina Dodelzon, Katherine Simon, Eileen Chang, Marcel Dominik Nickel, Linda Moy, Michele Drotman, Sungheon Gene Kim
Purpose: To develop a deep learning-based method for robust and rapid estimation of the fatty acid composition (FAC) in mammary adipose tissue.
Methods: A physics-based unsupervised deep learning network for estimation of fatty acid composition-network (FAC-Net) is proposed to estimate the number of double bonds and number of methylene-interrupted double bonds from multi-echo bipolar gradient-echo data, which are subsequently converted to saturated, mono-unsaturated, and poly-unsaturated fatty acids. The loss function was based on a 10 fat peak signal model. The proposed network was tested with a phantom containing eight oils with different FAC and on post-menopausal women scanned using a whole-body 3T MRI system between February 2022 and January 2024. The post-menopausal women included a control group (n = 8) with average risk for breast cancer and a cancer group (n = 7) with biopsy-proven breast cancer.
Results: The FAC values of eight oils in the phantom showed strong correlations between the measured and reference values (R2 > 0.9 except chain length). The FAC values measured from scan and rescan data of the control group showed no significant difference between the two scans. The FAC measurements of the cancer group conducted before contrast and after contrast showed a significant difference in saturated fatty acid and mono-unsaturated fatty acid. The cancer group has higher saturated fatty acid than the control group, although not statistically significant.
Conclusion: The results in this study suggest that the proposed FAC-Net can be used to measure the FAC of mammary adipose tissue from gradient-echo MRI data of the breast.
{"title":"Estimation of fatty acid composition in mammary adipose tissue using deep neural network with unsupervised training.","authors":"Suneeta Chaudhary, Elizabeth G Lane, Allison Levy, Anika McGrath, Eralda Mema, Melissa Reichmann, Katerina Dodelzon, Katherine Simon, Eileen Chang, Marcel Dominik Nickel, Linda Moy, Michele Drotman, Sungheon Gene Kim","doi":"10.1002/mrm.30401","DOIUrl":"https://doi.org/10.1002/mrm.30401","url":null,"abstract":"<p><strong>Purpose: </strong>To develop a deep learning-based method for robust and rapid estimation of the fatty acid composition (FAC) in mammary adipose tissue.</p><p><strong>Methods: </strong>A physics-based unsupervised deep learning network for estimation of fatty acid composition-network (FAC-Net) is proposed to estimate the number of double bonds and number of methylene-interrupted double bonds from multi-echo bipolar gradient-echo data, which are subsequently converted to saturated, mono-unsaturated, and poly-unsaturated fatty acids. The loss function was based on a 10 fat peak signal model. The proposed network was tested with a phantom containing eight oils with different FAC and on post-menopausal women scanned using a whole-body 3T MRI system between February 2022 and January 2024. The post-menopausal women included a control group (n = 8) with average risk for breast cancer and a cancer group (n = 7) with biopsy-proven breast cancer.</p><p><strong>Results: </strong>The FAC values of eight oils in the phantom showed strong correlations between the measured and reference values (R<sup>2</sup> > 0.9 except chain length). The FAC values measured from scan and rescan data of the control group showed no significant difference between the two scans. The FAC measurements of the cancer group conducted before contrast and after contrast showed a significant difference in saturated fatty acid and mono-unsaturated fatty acid. The cancer group has higher saturated fatty acid than the control group, although not statistically significant.</p><p><strong>Conclusion: </strong>The results in this study suggest that the proposed FAC-Net can be used to measure the FAC of mammary adipose tissue from gradient-echo MRI data of the breast.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142785603","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jiahao Li, Pablo Villar-Calle, Caitlin Chiu, Mahniz Reza, Nupoor Narula, Chao Li, Jinwei Zhang, Thanh D Nguyen, Yi Wang, Robert S Zhang, Jiwon Kim, Jonathan W Weinsaft, Pascal Spincemaille
Purpose: To develop a breath-hold cardiac quantitative susceptibility mapping (QSM) sequence for noninvasive measurement of differential cardiac chamber blood oxygen saturation (ΔSO2).
Methods: A non-gated three-dimensional stack-of-spirals QSM sequence was implemented to continuously sample the data throughout the cardiac cycle. Measurements of ΔSO2 between the right and left heart chamber obtained by the proposed sequence and a previously validated navigator Cartesian QSM sequence were compared in three cohorts consisting of healthy volunteers, coronavirus disease 2019 survivors, and patients with pulmonary hypertension. In the pulmonary-hypertension cohort, Bland-Altman plots were used to assess the agreement of ΔSO2 values obtained by QSM and those obtained by invasive right heart catheterization (RHC).
Results: Compared with navigator QSM (average acquisition time 419 ± 158 s), spiral QSM reduced the scan time on average by over 20-fold to a 20-s breath-hold. In all three cohorts, spiral QSM and navigator QSM yielded similar ΔSO2. Among healthy volunteers and coronavirus disease 2019 survivors, ΔSO2 was 17.41 ± 4.35% versus 17.67 ± 4.09% for spiral and navigator QSM, respectively. In pulmonary-hypertension patients, spiral QSM showed a slightly smaller ΔSO2 bias and narrower 95% limits of agreement than that obtained by navigator QSM (1.09% ± 6.47% vs. 2.79% ± 6.99%) when compared with right heart catheterization.
Conclusion: Breath-hold three-dimensional spiral cardiac QSM for measuring differential cardiac chamber blood oxygenation is feasible and provides values in good agreement with navigator cardiac QSM and with reference right heart catheterization.
目的:开发一种憋气心脏定量易感性图谱(QSM)序列,用于无创测量差分心室血氧饱和度(ΔSO2)。方法:采用非门控的三维叠螺旋QSM序列,在整个心脏周期内连续采样数据。在由健康志愿者、2019冠状病毒病幸存者和肺动脉高压患者组成的三个队列中,比较了由拟议序列和先前验证的导航笛卡尔QSM序列获得的左右心室之间ΔSO2的测量值。在肺动脉高压队列中,Bland-Altman图用于评估QSM获得的ΔSO2值与有创右心导管(RHC)获得的值的一致性。结果:与导航仪QSM(平均采集时间419±158 s)相比,螺旋QSM的扫描时间平均缩短20倍以上,屏气时间为20 s。在所有三个队列中,螺旋QSM和导航QSM的结果相似ΔSO2。在健康志愿者和2019冠状病毒病幸存者中,螺旋QSM和导航QSM的ΔSO2分别为17.41±4.35%和17.67±4.09%。在肺动脉高压患者中,螺旋QSM与导航QSM相比(1.09%±6.47% vs. 2.79%±6.99%)的偏差ΔSO2略小,95%的一致性限窄。结论:屏气三维螺旋心脏QSM测量心室血氧差异是可行的,与导航仪心脏QSM及参考右心导管测量值吻合良好。
{"title":"Spiral cardiac quantitative susceptibility mapping for differential cardiac chamber oxygenation-Initial validation in relation to invasive blood sampling.","authors":"Jiahao Li, Pablo Villar-Calle, Caitlin Chiu, Mahniz Reza, Nupoor Narula, Chao Li, Jinwei Zhang, Thanh D Nguyen, Yi Wang, Robert S Zhang, Jiwon Kim, Jonathan W Weinsaft, Pascal Spincemaille","doi":"10.1002/mrm.30393","DOIUrl":"10.1002/mrm.30393","url":null,"abstract":"<p><strong>Purpose: </strong>To develop a breath-hold cardiac quantitative susceptibility mapping (QSM) sequence for noninvasive measurement of differential cardiac chamber blood oxygen saturation (ΔSO<sub>2</sub>).</p><p><strong>Methods: </strong>A non-gated three-dimensional stack-of-spirals QSM sequence was implemented to continuously sample the data throughout the cardiac cycle. Measurements of ΔSO<sub>2</sub> between the right and left heart chamber obtained by the proposed sequence and a previously validated navigator Cartesian QSM sequence were compared in three cohorts consisting of healthy volunteers, coronavirus disease 2019 survivors, and patients with pulmonary hypertension. In the pulmonary-hypertension cohort, Bland-Altman plots were used to assess the agreement of ΔSO<sub>2</sub> values obtained by QSM and those obtained by invasive right heart catheterization (RHC).</p><p><strong>Results: </strong>Compared with navigator QSM (average acquisition time 419 ± 158 s), spiral QSM reduced the scan time on average by over 20-fold to a 20-s breath-hold. In all three cohorts, spiral QSM and navigator QSM yielded similar ΔSO<sub>2</sub>. Among healthy volunteers and coronavirus disease 2019 survivors, ΔSO<sub>2</sub> was 17.41 ± 4.35% versus 17.67 ± 4.09% for spiral and navigator QSM, respectively. In pulmonary-hypertension patients, spiral QSM showed a slightly smaller ΔSO<sub>2</sub> bias and narrower 95% limits of agreement than that obtained by navigator QSM (1.09% ± 6.47% vs. 2.79% ± 6.99%) when compared with right heart catheterization.</p><p><strong>Conclusion: </strong>Breath-hold three-dimensional spiral cardiac QSM for measuring differential cardiac chamber blood oxygenation is feasible and provides values in good agreement with navigator cardiac QSM and with reference right heart catheterization.</p>","PeriodicalId":18065,"journal":{"name":"Magnetic Resonance in Medicine","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2024-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142786014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}