A. M. Plokhotnichenko, V. A. Karachevtsev, V. A. Pashynska, P. O. Kuzema
Electrospun polymeric nanofibers incorporated with some medicines or biologically active nanoparticles have a huge range of various applications in biomedical fields such as wound dressing, drug delivery, and tissue engineering. Blending several polymers with different properties allows one to obtain a new material with improved physicochemical and mechanical characteristics, as well as to control the incorporation and release of medical agents, including antimicrobial, antifungal, and other substances. In this work, a novel approach to prepare a blend of two polymers [polyvinylpyrrolidone (PVP) and polymethyl methacrylate (PMMA)] to produce biocompatible nanofibers with incorporated antibacterial agents — phenylalanine or silver nanoparticles is proposed. The diameter of the obtained nanofibers is in the range of 2–4 μm. Antimicrobial agents are incorporated in PVP in an aqueous solution, then the prepared adduct is dried and mixed with PMMA in an organic solvent. In this nanofiber mat, PMMA provides the mechanical strength of the mat and assists in the gradual release of the antimicrobial agents. The formation of the PVP:PMMA nanofibers with incorporated antimicrobial agents at different stages was monitored by spectroscopy. The release of antimicrobial agents from the nanofibers mat during wetting was studied and confirmed by spectroscopy and mass spectrometry investigations.
{"title":"PMMA and PVP blended nanofibers with incorporated antimicrobial agent: Spectroscopy and mass spectrometry characterization","authors":"A. M. Plokhotnichenko, V. A. Karachevtsev, V. A. Pashynska, P. O. Kuzema","doi":"10.1063/10.0024959","DOIUrl":"https://doi.org/10.1063/10.0024959","url":null,"abstract":"Electrospun polymeric nanofibers incorporated with some medicines or biologically active nanoparticles have a huge range of various applications in biomedical fields such as wound dressing, drug delivery, and tissue engineering. Blending several polymers with different properties allows one to obtain a new material with improved physicochemical and mechanical characteristics, as well as to control the incorporation and release of medical agents, including antimicrobial, antifungal, and other substances. In this work, a novel approach to prepare a blend of two polymers [polyvinylpyrrolidone (PVP) and polymethyl methacrylate (PMMA)] to produce biocompatible nanofibers with incorporated antibacterial agents — phenylalanine or silver nanoparticles is proposed. The diameter of the obtained nanofibers is in the range of 2–4 μm. Antimicrobial agents are incorporated in PVP in an aqueous solution, then the prepared adduct is dried and mixed with PMMA in an organic solvent. In this nanofiber mat, PMMA provides the mechanical strength of the mat and assists in the gradual release of the antimicrobial agents. The formation of the PVP:PMMA nanofibers with incorporated antimicrobial agents at different stages was monitored by spectroscopy. The release of antimicrobial agents from the nanofibers mat during wetting was studied and confirmed by spectroscopy and mass spectrometry investigations.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"1 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. S. Fomanyuk, A. A. Ishchenko, M. A. Kudinova, I. A. Rusetskyi, M. O. Danilov, E. V. Gubareni, G. I. Dovbeshko, V. O. Smilyk, G. Ya. Kolbasov
By sintering ZnO powder mixed with ethylene glycol, electrodes on a glass substrate with a conductive SnO2 layer were obtained. In parallel, Ti/TiO2 electrodes were obtained by anodizing a titanium foil. Electrodes based on ZnO and TiO2 were sensitized to visible light with a cationic polymethine dye. The analysis of the photoelectrochemical characteristics of the obtained electrodes showed that the dye-sensitized ZnO films in the wavelength range of 450–650 nm have a photocurrent quantum yield two-fold higher compared with TiO2. In this way, a hybrid dye-ZnO structure sensitive to visible light was formed, which can be used for the photoelectrochemical cells for solar energy conversion, as well as for the detection of DNA and proteins in biological sensors.
{"title":"ZnO sensitization by polymethine dye in photoelectrochemical cells for solar energy conversion","authors":"S. S. Fomanyuk, A. A. Ishchenko, M. A. Kudinova, I. A. Rusetskyi, M. O. Danilov, E. V. Gubareni, G. I. Dovbeshko, V. O. Smilyk, G. Ya. Kolbasov","doi":"10.1063/10.0024973","DOIUrl":"https://doi.org/10.1063/10.0024973","url":null,"abstract":"By sintering ZnO powder mixed with ethylene glycol, electrodes on a glass substrate with a conductive SnO2 layer were obtained. In parallel, Ti/TiO2 electrodes were obtained by anodizing a titanium foil. Electrodes based on ZnO and TiO2 were sensitized to visible light with a cationic polymethine dye. The analysis of the photoelectrochemical characteristics of the obtained electrodes showed that the dye-sensitized ZnO films in the wavelength range of 450–650 nm have a photocurrent quantum yield two-fold higher compared with TiO2. In this way, a hybrid dye-ZnO structure sensitive to visible light was formed, which can be used for the photoelectrochemical cells for solar energy conversion, as well as for the detection of DNA and proteins in biological sensors.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"71 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
It is known that, compared with normal cells, cancer cells are characterized by an intensification of glycolysis and an increase in glucose uptake to ensure high proliferative activity. Meanwhile, the question of the relationship between the intensity of glycolysis and the metastatic potential of tumor cells remains open. The aim of the study was to determine the rate of glucose uptake (GCR) and lactate production (LPR) by Lewis lung carcinoma cells with high (LLC) and low metastatic potential (LLC/R9) during 1-day growth in vitro under standard incubation conditions. The results showed that glycolysis intensity was significantly higher in low-metastatic Lewis lung carcinoma cells compared to the high-metastatic cells.
{"title":"Biochemical features of glycolysis in cancer cells with different metastatic potential","authors":"Solomia Hnatiuk, Denys Kolesnyk, Galina Solyanik","doi":"10.1063/10.0024974","DOIUrl":"https://doi.org/10.1063/10.0024974","url":null,"abstract":"It is known that, compared with normal cells, cancer cells are characterized by an intensification of glycolysis and an increase in glucose uptake to ensure high proliferative activity. Meanwhile, the question of the relationship between the intensity of glycolysis and the metastatic potential of tumor cells remains open. The aim of the study was to determine the rate of glucose uptake (GCR) and lactate production (LPR) by Lewis lung carcinoma cells with high (LLC) and low metastatic potential (LLC/R9) during 1-day growth in vitro under standard incubation conditions. The results showed that glycolysis intensity was significantly higher in low-metastatic Lewis lung carcinoma cells compared to the high-metastatic cells.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"129 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hostilities are accompanied by extremely enhanced air pollution with particulate matter (PM) which was exactly shown in Ukraine, where increased PM2.5 (the size less than 2.5 μm) correlated with war activities [R. Zalakeviciute et al., Sustainability 14(21), 13832 (2022)]. Drastic increases in PM2.5 pollution from bombing and structural fires raise additional health concerns. Also, the widest spread of war-associated metal pollutants are copper and iron [Metal Pollutants Associated with War <https://ecopolitic.com.ua> (2023, November)] which are neurotoxic [B. Tarnacka et al., Int. J. Mol. Sci. 22(15), 7820 (2021)]. Calculations have revealed that Ukrainian regions are highly contaminated with copper and iron that in turn become bioavailable. Neurological disorders are the most common cause of disability/death and their increase is linked to air pollution with PM, which targets the nervous system triggering the development of neuropathology as shown in the epidemiological data of the Lancet Commission [P. J. Landrigan et al., Lancet 391, 462 (2018)]. Airborne PM can travel across state boundaries, oceans, and continents, and so disperses globally causing hazards to human health not only in Ukraine but also worldwide. Our hypothesis [T. Borisova, N. Krisanova, O. Gnatiuk, V. Boyko, and G. Dovbeshko, Project “War-derived air pollution nanohybrids composed of carbon-containing smoke nanoparticles and metal compounds: FTIR/Raman spectroscopic, fluorescent and membrane-active properties, their potential neurotoxicity and its prevention”, PAN.BFB.S.BWZ.380.022.2023] is that the neurotoxic potential of abandoned war-associated carbonaceous smoke nanoparticles can be significantly enhanced by copper and iron compounds during their combined release to the environment during bombing and fires. Moreover, they can form nanohybrids during interaction in the environment. This hypothesis is based on our recent experimental data regarding neurotoxic features of smoke PM from wood and plastics and their capability to interact with other pollutants [A. Borysov et al., Environ. Pollut. 263, 114502 (2020), A. Pastukhov et al., Sci. Rep. 13, 17771 (2023), T. Borisova, Environmental Nanoparticles: Focus on Multipollutant Strategy for Environmental Quality and Health Risk Estimations, Chapter in: Biomedical Nanomaterials, R. S. Stoika (ed.) (2021), pp. 305–321, T. Borisova and S. Komisarenko Environ Sci. Pollut. Res. 28(30), 40371 (2021)]. It is an urgent necessity to analyze the molecular structure and membrane-active properties of war-derived polluted nanohybrids composed of carbonaceous smoke nanoparticles, copper, and iron; to assess their potential neurotoxicity and to find a way of neuroprotection. Knowledge about the capability of different war-derived PM to form environmental nanohybrids with war-associated pollutant copper and iron, and their spectroscopic, fluorescent, and membrane-active features can be applicable in environmental monitoring. P
在乌克兰,PM2.5(小于 2.5 μm)的增加与战争活动有关[R. Zalakeviciute 等人,《可持续性》14(21),13832(2022 年)]。轰炸和结构性火灾导致 PM2.5 污染急剧增加,引发了更多的健康问题。此外,与战争相关的金属污染物中传播最广的是铜和铁[Metal Pollutants Associated with War <https://ecopolitic.com.ua> (2023, November)],它们具有神经毒性[B. Tarnacka et al., Int. J. Mol. Sci.计算显示,乌克兰地区受到铜和铁的高度污染,而铜和铁又可被生物利用。神经系统疾病是导致残疾/死亡的最常见原因,其增加与空气中的可吸入颗粒物污染有关,正如柳叶刀委员会的流行病学数据所示,可吸入颗粒物针对神经系统,引发神经病理学的发展[P. J. Landrigan 等人,Lancet 391, 462 (2018)]。空气中的可吸入颗粒物可以跨越国界、海洋和大陆,因此在全球范围内扩散,不仅在乌克兰,而且在全球范围内对人类健康造成危害。我们的假设 [T.Borisova, N. Krisanova, O. Gnatiuk, V. Boyko, and G. Dovbeshko, Project "War-derived air pollution nanohybrids composed of carboncontaining smoke nanoparticles and metal compounds:PAN.BFB.S.BWZ.380.022.2023] 认为,在轰炸和火灾期间,被遗弃的与战争有关的碳质烟雾纳米粒子在向环境中联合释放时,铜和铁化合物可显著增强其神经毒性潜能。此外,它们在环境中相互作用时还会形成纳米混合物。这一假设是根据我们最近关于木材和塑料烟雾微粒的神经毒性特征及其与其他污染物相互作用能力的实验数据提出的[A. Borysov et al.Borysov 等人,Environ.Pollut.263, 114502 (2020), A. Pastukhov et al., Sci. Rep. 13, 17771 (2023), T. Borisova, Environmental Nanoparticles:Focus on Multipollutant Strategy for Environmental Quality and Health Risk Estimations, Chapter in:Biomedical Nanomaterials, R. S. Stoika (ed.) (2021), pp.28(30), 40371 (2021)]。当务之急是分析由碳质烟雾纳米粒子、铜和铁组成的战争污染纳米混合物的分子结构和膜活性特性;评估其潜在的神经毒性并找到神经保护方法。了解不同的战争衍生可吸入颗粒物与战争相关污染物铜和铁形成环境纳米杂化物的能力,以及它们的光谱、荧光和膜活性特征,可用于环境监测。战争衍生纳米杂化物的潜在神经毒性数据可用于神经症状的预后和神经保护方法的开发。
{"title":"War-derived air pollution nanohybrids and their membrane-active properties","authors":"Galyna Dovbeshko, Tatiana Borisova","doi":"10.1063/10.0024966","DOIUrl":"https://doi.org/10.1063/10.0024966","url":null,"abstract":"Hostilities are accompanied by extremely enhanced air pollution with particulate matter (PM) which was exactly shown in Ukraine, where increased PM2.5 (the size less than 2.5 μm) correlated with war activities [R. Zalakeviciute et al., Sustainability 14(21), 13832 (2022)]. Drastic increases in PM2.5 pollution from bombing and structural fires raise additional health concerns. Also, the widest spread of war-associated metal pollutants are copper and iron [Metal Pollutants Associated with War &lt;https://ecopolitic.com.ua&gt; (2023, November)] which are neurotoxic [B. Tarnacka et al., Int. J. Mol. Sci. 22(15), 7820 (2021)]. Calculations have revealed that Ukrainian regions are highly contaminated with copper and iron that in turn become bioavailable. Neurological disorders are the most common cause of disability/death and their increase is linked to air pollution with PM, which targets the nervous system triggering the development of neuropathology as shown in the epidemiological data of the Lancet Commission [P. J. Landrigan et al., Lancet 391, 462 (2018)]. Airborne PM can travel across state boundaries, oceans, and continents, and so disperses globally causing hazards to human health not only in Ukraine but also worldwide. Our hypothesis [T. Borisova, N. Krisanova, O. Gnatiuk, V. Boyko, and G. Dovbeshko, Project “War-derived air pollution nanohybrids composed of carbon-containing smoke nanoparticles and metal compounds: FTIR/Raman spectroscopic, fluorescent and membrane-active properties, their potential neurotoxicity and its prevention”, PAN.BFB.S.BWZ.380.022.2023] is that the neurotoxic potential of abandoned war-associated carbonaceous smoke nanoparticles can be significantly enhanced by copper and iron compounds during their combined release to the environment during bombing and fires. Moreover, they can form nanohybrids during interaction in the environment. This hypothesis is based on our recent experimental data regarding neurotoxic features of smoke PM from wood and plastics and their capability to interact with other pollutants [A. Borysov et al., Environ. Pollut. 263, 114502 (2020), A. Pastukhov et al., Sci. Rep. 13, 17771 (2023), T. Borisova, Environmental Nanoparticles: Focus on Multipollutant Strategy for Environmental Quality and Health Risk Estimations, Chapter in: Biomedical Nanomaterials, R. S. Stoika (ed.) (2021), pp. 305–321, T. Borisova and S. Komisarenko Environ Sci. Pollut. Res. 28(30), 40371 (2021)]. It is an urgent necessity to analyze the molecular structure and membrane-active properties of war-derived polluted nanohybrids composed of carbonaceous smoke nanoparticles, copper, and iron; to assess their potential neurotoxicity and to find a way of neuroprotection. Knowledge about the capability of different war-derived PM to form environmental nanohybrids with war-associated pollutant copper and iron, and their spectroscopic, fluorescent, and membrane-active features can be applicable in environmental monitoring. P","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"71 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315457","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
T. Piddubnyi, S. Stepanian, V. Karachevtsev, L. Adamowicz
Changes in vibrational spectra are among the most important manifestations of the interaction between transition metal dichalcogenides and nucleic acid bases (NAB). Infrared and Raman spectra were calculated using the DFT/M06-2X method for the most stable stacked and covalently bonded complexes of pyrimidine bases with MoS2. Obtained spectra were analyzed to determine the spectral markers of the interactions between the pyrimidine bases and MoS2. We found that interaction with MoS2 leads to significant changes in both frequencies and intensities of NAB vibrations. The correlation between the changes and interaction energies of the NAB molecules with MoS2 was demonstrated. In general, changes in the vibrational frequencies in complexes with covalent bonds are significantly greater than ones in stacked ones. For the bonded complexes, the most significant changes are observed for those fragments of the NAB molecules that are directly involved in the formation of the covalent bonds. Calculations predict the decrease of the IR intensity and Raman activities of the NAB molecules in the spectra of stacked complexes and their increase in the spectra of covalently bonded complexes.
{"title":"IR and Raman markers of the interactions between MoS2 and pyrimidine bases","authors":"T. Piddubnyi, S. Stepanian, V. Karachevtsev, L. Adamowicz","doi":"10.1063/10.0024968","DOIUrl":"https://doi.org/10.1063/10.0024968","url":null,"abstract":"Changes in vibrational spectra are among the most important manifestations of the interaction between transition metal dichalcogenides and nucleic acid bases (NAB). Infrared and Raman spectra were calculated using the DFT/M06-2X method for the most stable stacked and covalently bonded complexes of pyrimidine bases with MoS2. Obtained spectra were analyzed to determine the spectral markers of the interactions between the pyrimidine bases and MoS2. We found that interaction with MoS2 leads to significant changes in both frequencies and intensities of NAB vibrations. The correlation between the changes and interaction energies of the NAB molecules with MoS2 was demonstrated. In general, changes in the vibrational frequencies in complexes with covalent bonds are significantly greater than ones in stacked ones. For the bonded complexes, the most significant changes are observed for those fragments of the NAB molecules that are directly involved in the formation of the covalent bonds. Calculations predict the decrease of the IR intensity and Raman activities of the NAB molecules in the spectra of stacked complexes and their increase in the spectra of covalently bonded complexes.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"14 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Large organic molecules and biomolecules can adopt multiple conformations, with the occurrences determined by their relative energies. Identifying the energetically most favorable conformations is crucial, especially when interpreting spectroscopic experiments conducted under cryogenic conditions. When the effects of irregular surrounding medium, such as noble gas matrices, on the vibrational properties of molecules become important, semi-empirical (SE) quantum-chemical methods are often employed for computational simulations. Although SE methods are computationally more efficient than first-principle quantum-chemical methods, they can be inaccurate in determining the energies of conformers in some molecules while displaying good accuracy in others. In this study, we employ a combination of advanced machine learning techniques, such as graph neural networks, to identify molecules with the highest errors in the relative energies of conformers computed by the semi-empirical tight-binding method GFN1-xTB. The performance of three different machine learning models is assessed by comparing their predicted errors with the actual errors in conformer energies obtained via the GFN1-xTB method. We further applied the ensemble machine-learning model to a larger collection of molecules from the ChEMBL database and identified a set of molecules as being challenging for the GFN1-xTB method. These molecules hold potential for further improvement of the GFN1-xTB method, showcasing the capability of machine learning models in identifying molecules that can challenge its physical model.
{"title":"Which molecules can challenge density-functional tight-binding methods in evaluating the energies of conformers? investigation with machine-learning toolset","authors":"Andrii Terets, Tymofii Nikolaienko","doi":"10.1063/10.0024962","DOIUrl":"https://doi.org/10.1063/10.0024962","url":null,"abstract":"Large organic molecules and biomolecules can adopt multiple conformations, with the occurrences determined by their relative energies. Identifying the energetically most favorable conformations is crucial, especially when interpreting spectroscopic experiments conducted under cryogenic conditions. When the effects of irregular surrounding medium, such as noble gas matrices, on the vibrational properties of molecules become important, semi-empirical (SE) quantum-chemical methods are often employed for computational simulations. Although SE methods are computationally more efficient than first-principle quantum-chemical methods, they can be inaccurate in determining the energies of conformers in some molecules while displaying good accuracy in others. In this study, we employ a combination of advanced machine learning techniques, such as graph neural networks, to identify molecules with the highest errors in the relative energies of conformers computed by the semi-empirical tight-binding method GFN1-xTB. The performance of three different machine learning models is assessed by comparing their predicted errors with the actual errors in conformer energies obtained via the GFN1-xTB method. We further applied the ensemble machine-learning model to a larger collection of molecules from the ChEMBL database and identified a set of molecules as being challenging for the GFN1-xTB method. These molecules hold potential for further improvement of the GFN1-xTB method, showcasing the capability of machine learning models in identifying molecules that can challenge its physical model.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"64 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
O. A. Zhytniakivska, U. K. Tarabara, K. O. Vus, V. M. Trusova, G. P. Gorbenko
In the present study, the multiple ligands simultaneous docking technique was employed to explore the feasibility of developing the protein-based nanocarriers in which the therapeutic agents (antiviral drugs) will be combined with a visualizing agent (the phosphonium dye TDV). By varying both the protein (serum albumin, lyso-zyme, cytochrome c, insulin) and antiviral agent (favipiravir, molnupiravir, nirmatrelvir, ritonavir) components of the examined complexes it was demonstrated that in the albumin- and cytochrome c-containing systems the TDV and antiviral dyes occupy distinct binding sites on the protein molecule, exhibiting no interference with each other. It was found that the TDV propensity to reside within the same insulin cavity as the antiviral agent might hinder the drug’s release from the nanocarrier. Our results indicate that the most promising energetically stable protein-drug-TDV systems for developing protein-based nanocarriers with the examined antiviral drugs can be created on a basis of serum albumin.
本研究采用了多配体同时对接技术来探索开发基于蛋白质的纳米载体的可行性,其中治疗剂(抗病毒药物)将与可视剂(鏻染料 TDV)相结合。通过改变所研究复合物中的蛋白质(血清白蛋白、溶菌酶、细胞色素 c、胰岛素)和抗病毒药物(法非拉韦、莫鲁拉韦、奈伐韦、利托那韦)成分,证明在含白蛋白和细胞色素 c 的系统中,TDV 和抗病毒染料在蛋白质分子上占据不同的结合位点,互不干扰。研究发现,TDV 与抗病毒药剂位于同一胰岛素腔内的倾向可能会阻碍药物从纳米载体中释放。我们的研究结果表明,以血清白蛋白为基础,可以建立能量最稳定的蛋白质-药物-TDV 系统,用于开发含有抗病毒药物的蛋白质纳米载体。
{"title":"The interactions of antiviral drugs and a phosphonium fluorescent dye with proteins as revealed by a multiple ligand simultaneous docking","authors":"O. A. Zhytniakivska, U. K. Tarabara, K. O. Vus, V. M. Trusova, G. P. Gorbenko","doi":"10.1063/10.0024961","DOIUrl":"https://doi.org/10.1063/10.0024961","url":null,"abstract":"In the present study, the multiple ligands simultaneous docking technique was employed to explore the feasibility of developing the protein-based nanocarriers in which the therapeutic agents (antiviral drugs) will be combined with a visualizing agent (the phosphonium dye TDV). By varying both the protein (serum albumin, lyso-zyme, cytochrome c, insulin) and antiviral agent (favipiravir, molnupiravir, nirmatrelvir, ritonavir) components of the examined complexes it was demonstrated that in the albumin- and cytochrome c-containing systems the TDV and antiviral dyes occupy distinct binding sites on the protein molecule, exhibiting no interference with each other. It was found that the TDV propensity to reside within the same insulin cavity as the antiviral agent might hinder the drug’s release from the nanocarrier. Our results indicate that the most promising energetically stable protein-drug-TDV systems for developing protein-based nanocarriers with the examined antiviral drugs can be created on a basis of serum albumin.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"13 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140316630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The current state of research on unconventional luminescence of nonconjugated polymers, which arises as a result of spatial conjugation due to the overlapping of electronic orbitals of atoms in aggregates formed at high concentrations of substances in solutions or in the solid state, is considered. The manifold applications of clusteroluminogenic polymers in the realms of biology and medicine take center stage. This includes the utilization of clusteroluminescence for monitoring and visualizing dynamic reactions, exploring pathways in biomedical research and targeted drug delivery, facilitating real-time monitoring, as well as imaging and tracking. The emphasis is placed on their pivotal role in combination therapy and theranostics.
{"title":"Clusteroluminogenic polymers: Applications in biology and medicine (Review article)","authors":"Tamara Sakhno, Dmytro Ivashchenko, Anatolii Semenov, Olena Ivashchenko, Yuriy Sakhno","doi":"10.1063/10.0024970","DOIUrl":"https://doi.org/10.1063/10.0024970","url":null,"abstract":"The current state of research on unconventional luminescence of nonconjugated polymers, which arises as a result of spatial conjugation due to the overlapping of electronic orbitals of atoms in aggregates formed at high concentrations of substances in solutions or in the solid state, is considered. The manifold applications of clusteroluminogenic polymers in the realms of biology and medicine take center stage. This includes the utilization of clusteroluminescence for monitoring and visualizing dynamic reactions, exploring pathways in biomedical research and targeted drug delivery, facilitating real-time monitoring, as well as imaging and tracking. The emphasis is placed on their pivotal role in combination therapy and theranostics.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"87 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315544","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sergiy Perepelytsya, Tudor Vasiliu, Aatto Laaksonen, Leon De Villiers Engelbrecht, Francesca Mocci
Natural polyamines play a fundamental role in the cell cycle. Despite being recognized as the most abundant organic counterions of DNA in the cell nucleus, their interactions with DNA have not been fully characterized. In a recent work [S. Perepelytsya, T. Vasiliu, A. Laaksonen, L. Engelbrecht, G. Brancato, and F. Mocci, J. Molec. Liq.389, 122828 (2023)], we have shown how the interactions between spermidine3+ and the DNA double helix induce significant conformational variations in the polyamine molecule. Specifically, we found that DNA induces conformations that are not observed in solution. Following that study, we present here a detailed investigation of the most compact conformation of the polyamine, analyzing its connection to the interaction with the DNA duplex. The analysis reveals that anomalous bent conformations of the spermidine3+ molecule result from the interaction of all three amino groups of the polyamine with the DNA phosphate groups on the minor groove side of the double helix. The changes in dihedral angles of the bent spermidine3+ molecule can be explained in terms of conformational transformations of six- and seven-membered rings, analogous to cyclohexane and cycloheptane. The analysis of the position of spermidine3+ molecule along the DNA surface reveals a sequence specificity of this binding mode with a marked preference for the narrow minor groove of A-tracts. The formation of the anomalous bent conformations of spermidine3+ in the complex with the DNA double helix is expected to be of paramount importance in understanding the mechanisms underlying DNA’s biological function.
天然多胺在细胞周期中发挥着重要作用。尽管多胺被认为是细胞核中最丰富的 DNA 有机反离子,但它们与 DNA 的相互作用尚未得到充分表征。在最近的一项研究中 [S. Perepelytsya, T.Perepelytsya, T. Vasiliu, A. Laaksonen, L. Engelbrecht, G. Brancato, and F. Mocci, J. Molec.Liq.389,122828 (2023)],我们展示了亚精胺 3+ 与 DNA 双螺旋之间的相互作用如何诱导多胺分子发生显著的构象变化。具体来说,我们发现 DNA 诱导的构象在溶液中无法观察到。继这项研究之后,我们在此详细研究了多胺最紧密的构象,分析了它与 DNA 双链相互作用的联系。分析结果表明,精胺 3+ 分子的异常弯曲构象是多胺的所有三个氨基与双螺旋小沟侧 DNA 磷酸基相互作用的结果。弯曲的亚精胺 3+ 分子二面角的变化可以用六元环和七元环的构象转变来解释,类似于环己烷和环庚烷。对亚精胺 3+ 分子沿 DNA 表面位置的分析表明,这种结合模式具有序列特异性,明显偏爱 A-痕量的狭窄小沟。在与 DNA 双螺旋的复合物中,亚精胺 3+ 形成了反常的弯曲构象,这对于了解 DNA 的生物功能机制具有极其重要的意义。
{"title":"Unusual bending patterns of spermidine3+ bound to DNA double helix","authors":"Sergiy Perepelytsya, Tudor Vasiliu, Aatto Laaksonen, Leon De Villiers Engelbrecht, Francesca Mocci","doi":"10.1063/10.0024969","DOIUrl":"https://doi.org/10.1063/10.0024969","url":null,"abstract":"Natural polyamines play a fundamental role in the cell cycle. Despite being recognized as the most abundant organic counterions of DNA in the cell nucleus, their interactions with DNA have not been fully characterized. In a recent work [S. Perepelytsya, T. Vasiliu, A. Laaksonen, L. Engelbrecht, G. Brancato, and F. Mocci, J. Molec. Liq.389, 122828 (2023)], we have shown how the interactions between spermidine3+ and the DNA double helix induce significant conformational variations in the polyamine molecule. Specifically, we found that DNA induces conformations that are not observed in solution. Following that study, we present here a detailed investigation of the most compact conformation of the polyamine, analyzing its connection to the interaction with the DNA duplex. The analysis reveals that anomalous bent conformations of the spermidine3+ molecule result from the interaction of all three amino groups of the polyamine with the DNA phosphate groups on the minor groove side of the double helix. The changes in dihedral angles of the bent spermidine3+ molecule can be explained in terms of conformational transformations of six- and seven-membered rings, analogous to cyclohexane and cycloheptane. The analysis of the position of spermidine3+ molecule along the DNA surface reveals a sequence specificity of this binding mode with a marked preference for the narrow minor groove of A-tracts. The formation of the anomalous bent conformations of spermidine3+ in the complex with the DNA double helix is expected to be of paramount importance in understanding the mechanisms underlying DNA’s biological function.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"55 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140315639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In several theoretical works, it was argued that under certain conditions Abrikosov vortices in multiband superconductors can split and exist in the form of fractional vortices, formed separately in superfluid condensates of different electron bands. Such vortices possess a fractional flux quantum, and these fractional vortices attract each other, trying to join into a composite vortex with the whole flux quantum ϕ0=h/2e. In the present work, we solve numerically the nonlinear dynamic equation for the composite vortex, settled in the pinning potential well of the columnar defect within a two-band superconductor, and exerted the rf Lorentz force action. We demonstrate that at high enough rf current amplitudes such composite Abrikosov vortices will dissociate into fractional ones and escape from the pinning potential well. The sequence of these events depends on the character of the pinning potential well, e.g., the radius of the pinning potential well. The possible manifestation of such kind transitions in rf electrodynamic characteristics, such as a complex rf resistivity and harmonics generation is calculated.
{"title":"Dissociation of composite Abrikosov vortices in two-band superconductors in a strong rf field","authors":"A. O. Pokusinskyi, A. L. Kasatkin","doi":"10.1063/10.0024321","DOIUrl":"https://doi.org/10.1063/10.0024321","url":null,"abstract":"In several theoretical works, it was argued that under certain conditions Abrikosov vortices in multiband superconductors can split and exist in the form of fractional vortices, formed separately in superfluid condensates of different electron bands. Such vortices possess a fractional flux quantum, and these fractional vortices attract each other, trying to join into a composite vortex with the whole flux quantum ϕ0=h/2e. In the present work, we solve numerically the nonlinear dynamic equation for the composite vortex, settled in the pinning potential well of the columnar defect within a two-band superconductor, and exerted the rf Lorentz force action. We demonstrate that at high enough rf current amplitudes such composite Abrikosov vortices will dissociate into fractional ones and escape from the pinning potential well. The sequence of these events depends on the character of the pinning potential well, e.g., the radius of the pinning potential well. The possible manifestation of such kind transitions in rf electrodynamic characteristics, such as a complex rf resistivity and harmonics generation is calculated.","PeriodicalId":18077,"journal":{"name":"Low Temperature Physics","volume":"4 1","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139945922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}