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Computing the Matching Polynomials and Independence Polynomials of Phenylene Chains
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-26 DOI: 10.1002/qua.70002
Hanlin Chen, Xiang Gao

Phenylene, a significant structural motif in organic chemistry, exhibits remarkable electron delocalization and stability. In this paper, we first present reduction formulas for computing the matching polynomial and the independence polynomial of any phenylene chain using the transfer matrix technique. We then derive computational formulas for the Hosoya index and the Merrifield–Simmons index of phenylene chains. Additionally, we obtain the expected values of the Hosoya index and the Merrifield–Simmons index for a random phenylene chain.

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引用次数: 0
Fractional Approach for Diffusion Equations Arising From Oil Pollution Using the Fractional Natural Decomposition Method
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-26 DOI: 10.1002/qua.27529
Faruk Düşünceli, Ercan Çelik

The main goal is to use the fractional natural decomposition approach to solve diffusion equations related to oil pollution. We examine a model that depicts the evolution of chemical processes in a network that burns helium. Elegant consolidations of nature transform with Adomian decomposition method are made possible by the Caputo operator with fractional order taken into consideration and hired algorithm. We looked at the expected model in a different sequence using fraction to show the expected algorithm's proficiency. Moreover, plots for various arbitrary orders have taken use of the physical characteristics of the obtained results. The obtained findings verify that the algorithm under consideration is highly efficient, methodical, straightforward to use, and accurate in examining the characteristics of the fractional differential system connected to related fields.

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引用次数: 0
Correction to “First-Principles Quantum Analysis of Promising Double Perovskites Z2SiF6 (Z = K, Li, Na, Rb) as Prospective Light Harvesting Materials: Optoelectronic, Structural and Thermodynamic Properties”
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-22 DOI: 10.1002/qua.27519
<p>K. Fatima, Z. Abbas, F. Butt, et al., “First-Principles Quantum Analysis of Promising Double Perovskites Z<sub>2</sub>SiF<sub>6</sub> (Z = K, Li, Na, Rb) as Prospective Light Harvesting Materials: Optoelectronic, Structural and Thermodynamic Properties,” <i>International Journal of Quantum Chemistry</i> 123, no. 18 (2023): e27179, https://doi.org/10.1002/qua.27179.</p><p>Previously, we added the approximate values of the threshold energies in the manuscript. However, now we have added different values for all threshold energies and also added insets in the figures to show difference between the curves of various compounds. Accordingly in this Correction we have reported the corrected versions of Figure 8, Table 5, and Figure 9.</p><p></p><p><b>FIGURE 9</b> | (a) Reflectivity <span></span><math> <semantics> <mrow> <mi>R</mi> <mrow> <mo>(</mo> <mi>ω</mi> <mo>)</mo> </mrow> </mrow> <annotation>$$ Rleft(omega right) $$</annotation> </semantics></math>, (b) energy loss function <span></span><math> <semantics> <mrow> <msub> <mi>E</mi> <mtext>loss</mtext> </msub> <mrow> <mo>(</mo> <mi>ω</mi> <mo>)</mo> </mrow> </mrow> <annotation>$$ {E}_{mathrm{loss}}left(omega right) $$</annotation> </semantics></math>, (c) real conductivity <span></span><math> <semantics> <mrow> <mi>σ</mi> <mrow> <mo>(</mo> <mi>ω</mi> <mo>)</mo> </mrow> </mrow> <annotation>$$ sigma left(omega right) $$</annotation> </semantics></math> and (d) absorption coefficient <span></span><math> <semantics> <mrow> <mi>I</mi> <mrow> <mo>(</mo> <mi>ω</mi> <mo>)</mo> </mrow> </mrow> <annotation>$$ Ileft(omega right) $$</annotation> </semantics></math> and for Z<sub>2</sub>SiF<sub>6</sub> (Z = K, Li, Na, Rb).</p><p><b>TABLE 5</b> | Calculated threshold values (eV) of optical parameters (<span></span><math> <semantics> <mrow> <msub> <mi>ε</mi> <mn>2</mn> </msub> <mrow> <mo>(</mo> <m
{"title":"Correction to “First-Principles Quantum Analysis of Promising Double Perovskites Z2SiF6 (Z = K, Li, Na, Rb) as Prospective Light Harvesting Materials: Optoelectronic, Structural and Thermodynamic Properties”","authors":"","doi":"10.1002/qua.27519","DOIUrl":"https://doi.org/10.1002/qua.27519","url":null,"abstract":"&lt;p&gt;K. Fatima, Z. Abbas, F. Butt, et al., “First-Principles Quantum Analysis of Promising Double Perovskites Z&lt;sub&gt;2&lt;/sub&gt;SiF&lt;sub&gt;6&lt;/sub&gt; (Z = K, Li, Na, Rb) as Prospective Light Harvesting Materials: Optoelectronic, Structural and Thermodynamic Properties,” &lt;i&gt;International Journal of Quantum Chemistry&lt;/i&gt; 123, no. 18 (2023): e27179, https://doi.org/10.1002/qua.27179.&lt;/p&gt;&lt;p&gt;Previously, we added the approximate values of the threshold energies in the manuscript. However, now we have added different values for all threshold energies and also added insets in the figures to show difference between the curves of various compounds. Accordingly in this Correction we have reported the corrected versions of Figure 8, Table 5, and Figure 9.&lt;/p&gt;&lt;p&gt;&lt;/p&gt;&lt;p&gt;&lt;b&gt;FIGURE 9&lt;/b&gt; | (a) Reflectivity &lt;span&gt;&lt;/span&gt;&lt;math&gt;\u0000 &lt;semantics&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mi&gt;R&lt;/mi&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mo&gt;(&lt;/mo&gt;\u0000 &lt;mi&gt;ω&lt;/mi&gt;\u0000 &lt;mo&gt;)&lt;/mo&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;annotation&gt;$$ Rleft(omega right) $$&lt;/annotation&gt;\u0000 &lt;/semantics&gt;&lt;/math&gt;, (b) energy loss function &lt;span&gt;&lt;/span&gt;&lt;math&gt;\u0000 &lt;semantics&gt;\u0000 &lt;mrow&gt;\u0000 &lt;msub&gt;\u0000 &lt;mi&gt;E&lt;/mi&gt;\u0000 &lt;mtext&gt;loss&lt;/mtext&gt;\u0000 &lt;/msub&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mo&gt;(&lt;/mo&gt;\u0000 &lt;mi&gt;ω&lt;/mi&gt;\u0000 &lt;mo&gt;)&lt;/mo&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;annotation&gt;$$ {E}_{mathrm{loss}}left(omega right) $$&lt;/annotation&gt;\u0000 &lt;/semantics&gt;&lt;/math&gt;, (c) real conductivity &lt;span&gt;&lt;/span&gt;&lt;math&gt;\u0000 &lt;semantics&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mi&gt;σ&lt;/mi&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mo&gt;(&lt;/mo&gt;\u0000 &lt;mi&gt;ω&lt;/mi&gt;\u0000 &lt;mo&gt;)&lt;/mo&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;annotation&gt;$$ sigma left(omega right) $$&lt;/annotation&gt;\u0000 &lt;/semantics&gt;&lt;/math&gt; and (d) absorption coefficient &lt;span&gt;&lt;/span&gt;&lt;math&gt;\u0000 &lt;semantics&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mi&gt;I&lt;/mi&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mo&gt;(&lt;/mo&gt;\u0000 &lt;mi&gt;ω&lt;/mi&gt;\u0000 &lt;mo&gt;)&lt;/mo&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;/mrow&gt;\u0000 &lt;annotation&gt;$$ Ileft(omega right) $$&lt;/annotation&gt;\u0000 &lt;/semantics&gt;&lt;/math&gt; and for Z&lt;sub&gt;2&lt;/sub&gt;SiF&lt;sub&gt;6&lt;/sub&gt; (Z = K, Li, Na, Rb).&lt;/p&gt;&lt;p&gt;&lt;b&gt;TABLE 5&lt;/b&gt; | Calculated threshold values (eV) of optical parameters (&lt;span&gt;&lt;/span&gt;&lt;math&gt;\u0000 &lt;semantics&gt;\u0000 &lt;mrow&gt;\u0000 &lt;msub&gt;\u0000 &lt;mi&gt;ε&lt;/mi&gt;\u0000 &lt;mn&gt;2&lt;/mn&gt;\u0000 &lt;/msub&gt;\u0000 &lt;mrow&gt;\u0000 &lt;mo&gt;(&lt;/mo&gt;\u0000 &lt;m","PeriodicalId":182,"journal":{"name":"International Journal of Quantum Chemistry","volume":"125 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2024-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/qua.27519","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143118016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quantitative Structure-Property Relationship Analysis of Physical and ADMET Properties of Anticancer Drugs Using Domination Topological Indices 利用优势拓扑指数定量分析抗癌药物物理和ADMET性质的构效关系
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-20 DOI: 10.1002/qua.27525
Geethu Kuriachan, Parthiban Angamuthu

Chemical graph theory is an important field in mathematical chemistry that uses domination degree-based indices to convert the chemical structure of molecules into numerical values. These indices help investigate physico-chemical properties, pharmacokinetic properties, and biological activity in QSPR and QSAR studies. Among the most life-threatening diseases, cancer remains a major global health concern. Various anticancer drugs like Tegafur, Floxuridine, etc., are employed to combat different cancer types. This paper designs a QSPR model to predict selected physico-chemical and ADMET properties of these anticancer drugs using indices like the first, second, and modified first Zagreb domination topological index; forgotten, hyper, and modified forgotten domination topological index; and first, second, and modified first Zagreb γ$$ gamma $$-domination topological index; forgotten, hyper, and modified forgotten γ$$ gamma $$-domination topological index, via ϕd$$ {phi}_d $$- and ϕγ$$ {phi}_{gamma } $$-polynomials. The relationship analyzes for these properties with the domination degree-based indices are conducted using the inverse cubic regression method. The results can correlate with other properties, aiding in constructing a disease-based drug library.

化学图论是数学化学中的一个重要领域,它利用基于支配度的指标将分子的化学结构转化为数值。这些指标有助于研究QSPR和QSAR研究中的物理化学性质、药代动力学性质和生物活性。在最威胁生命的疾病中,癌症仍然是一个主要的全球健康问题。各种抗癌药物,如替加富、氟尿定等,被用来对抗不同类型的癌症。本文设计了一个QSPR模型,利用第一、第二和改进的第一萨格勒布支配拓扑指数来预测这些抗癌药物的物理化学和ADMET性质;遗忘型、超遗忘型和修改遗忘型支配拓扑索引;以及第一、第二和修正的第一Zagreb γ $$ gamma $$ -支配拓扑指数;遗忘型、超遗忘型和修正型遗忘型γ $$ gamma $$ -支配型拓扑指数通过ϕ d $$ {phi}_d $$ -和ϕ γ$$ {phi}_{gamma } $$ -多项式。利用三次逆回归方法对这些性质与基于控制度的指标之间的关系进行了分析。结果可以与其他特性相关联,有助于构建基于疾病的药物库。
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引用次数: 0
Furan Substitution and Ring Fusion Strategies for Enhancing the Fluorescence Performance of Oligothiophene 增强低聚噻吩荧光性能的呋喃取代和环融合策略
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-20 DOI: 10.1002/qua.27528
Yaoxuan Zhang, Xiping Zhu, Shaohui Zheng

Oligothiophenes have attracted a lot of attention due to their excellent photoelectric properties. However, the effects of ring fusion and furan substitution on the optoelectrical properties of oligothiophenes are still unclear. In this study, based on popular pentathiophene, eight molecules including three ring-fused and five furan-substituted derivatives are systematically designed, and their frontier molecular orbitals, dipole moments, planarity, exciton binding energy (Eb), singlet-triplet energy differences, and fluorescence quantum yields are calculated. The computed data demonstrate that full-ring fusion and two- and more-furan substitutions can greatly enhance the fluorescence quantum yields. Five potential molecules with about 100% of fluorescence quantum yield, i.e., TTTTT, SOSOS, OSOSO, SOOOS, and OOOOO, are screened. The results show that to obtain high fluorescence quantum yield, high Eb is required, and the flexible torsional displacement during the excitation from ground to the first excited state should be removed as much as possible. This work sheds some light on the future design of high-performance oligothiophene-based fluorescent materials.

低聚噻吩因其优异的光电性能而受到广泛关注。然而,环融合和呋喃取代对低聚噻吩光电性能的影响尚不清楚。本研究以常见的五噻吩为基础,系统设计了包括3个环融合衍生物和5个呋喃取代衍生物在内的8个分子,并计算了它们的前沿分子轨道、偶极矩、平面度、激子结合能(Eb)、单重态-三重态能差和荧光量子产率。计算数据表明,全环融合和两个或多个呋喃取代可以大大提高荧光量子产率。筛选了5个荧光量子产率约为100%的潜在分子TTTTT、SOSOS、OSOSO、SOOOS和OOOOO。结果表明,为了获得高荧光量子产率,需要高Eb,并应尽可能消除从地激发到第一激发态的柔性扭转位移。这项工作为未来高性能低聚噻吩基荧光材料的设计提供了一些启示。
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引用次数: 0
Global Analytic Potential Energy Surface of PH2+ (13A″) and Dynamics Studies of the P+(3P) + D2 Reaction PH2+ (13A″) 的全局分析势能面和 P+(3P) + D2 反应的动力学研究
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-20 DOI: 10.1002/qua.70004
Meirong Li, Xia Li, Zhiyong Yang, Ziliang Zhu, Wei Xing

The global potential energy surface (PES) of PH2+(13A″) was constructed using permutation invariant polynomial neural network method based on 18 566 ab initio energy points. In ab initio calculation, aug-cc-pVQZ and aug-cc-pwCVQZ basis sets were used for H and P+, respectively. The topographic features of the PES were discussed in detail and compared with available theoretical and experimental values. The results indicate that the PES is well fitted by using neural network method. In addition, quasi-classical trajectory (QCT) calculations were carried out for the P+(3P) + D2 reaction in the collision energy range from 1.2 to 8.0 eV. The integral cross sections were reported and compared with experimental data. The differential cross sections were also calculated, and it reflects that the “complex-forming” mechanism dominates the reaction in the low collision energy range, and direct abstraction mechanism plays a dominant role in the high collision energy range.

采用基于18 566个从头算能量点的置换不变多项式神经网络方法,构建了PH2+(13A″)的全局势能面(PES)。从头计算时,H和P+分别采用aug-cc-pVQZ基集和aug-cc-pwCVQZ基集。详细讨论了PES的地形特征,并与现有的理论和实验值进行了比较。结果表明,采用神经网络方法对PES进行了较好的拟合。此外,对碰撞能量为1.2 ~ 8.0 eV的P+(3P) + D2反应进行了准经典轨迹(QCT)计算。报告了整体截面,并与实验数据进行了比较。微分截面计算结果表明,在低碰撞能量范围内,反应以“络合形成”机制为主,在高碰撞能量范围内,反应以直接抽象机制为主。
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引用次数: 0
Graphical Approach to Interpreting and Efficiently Evaluating Geminal Wavefunctions 解读和高效评估宝石波函数的图形方法
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-20 DOI: 10.1002/qua.70000
Michelle Richer, Taewon D. Kim, Paul W. Ayers

We consider wavefunctions built from antisymmetrized products of two-electron wavefunctions (geminals), which is arguably the simplest extension of the antisymmetrized product of one-electron wavefunctions (orbitals) (i.e., a Slater determinant). Extensive use of geminals in wavefunctions has been limited by their high cost stemming from the many combinations of the two-electron basis functions (orbital pairs) used to build the geminals. When evaluating the overlap of the APG wavefunction with an orthogonal Slater determinant, this cost can be interpreted as the cost of evaluating the permanent, resulting from the symmetry with respect to the interchange of orbital pairs, and the cost of assigning the occupied orbitals to the orbital pairs of the wavefunction. Focusing on the latter, we present a graphical interpretation of the Slater determinant and utilize the maximum weighted matching algorithm to estimate the combination of orbital pairs with the largest contribution to the overlap. Then, the cost due to partitioning the occupied orbitals in the overlap is reduced from 𝒪((N1)!!) to 𝒪(N3logN). Computational results show that many of these combinations are not necessary to obtain an accurate solution to the wavefunction. Because the APG wavefunction is the most general of the geminal wavefunctions, this approach can be applied to any of the simpler geminal wavefunction ansätze. In fact, this approach may even be extended to generalized quasiparticle wavefunctions, opening the door to tractable wavefunctions built using components of arbitrary numbers of electrons, not just two electrons.

我们考虑由双电子波函数的反对称积(二项式)建立的波函数,这可以说是单电子波函数(轨道)的反对称积(即斯莱特行列式)的最简单的扩展。由于用于构建双电子基函数(轨道对)的许多组合,它们的高成本限制了双电子在波函数中的广泛使用。当用正交斯莱特行列式评估APG波函数的重叠时,这个成本可以解释为评估永久的成本,这是由轨道对交换的对称性引起的,以及将已占轨道分配给波函数的轨道对的成本。针对后者,我们提出了斯莱特行列式的图解解释,并利用最大加权匹配算法来估计对重叠贡献最大的轨道对组合。然后,由于在重叠中划分已占轨道的代价从(N−1)!! )变成了态(n3log N)计算结果表明,许多这些组合对于获得波函数的精确解是不必要的。因为APG波函数是最通用的二次波函数,这种方法可以应用于任何更简单的二次波函数ansätze。事实上,这种方法甚至可以扩展到广义准粒子波函数,从而为使用任意数量的电子(而不仅仅是两个电子)组成的可处理波函数打开了大门。
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引用次数: 0
Deciphering the Influence of Alkylene Bridged and Chelating Mode on Pd—C and Pd—X (X = Cl, Br, and I) Bonding Interaction Within Bis-(NHC)-Palladium Complexes Using Quantum Chemistry Tools 利用量子化学工具解读烷基桥接和螯合模式对双(NHC)-钯配合物中Pd-C和Pd-X (X = Cl, Br和I)键相互作用的影响
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-11 DOI: 10.1002/qua.27522
Gaël Mouzong D'Ambassa, Jean Moto Ongagna, Abel Idrice Adjieufack, Djendo Mazia Suzane Leonie, Désiré Bikele Mama

In this paper, we have explored the influence of alkylene-bridged length and coordination mode on the reactivity of a series of 24 alkylene-bridged palladium complexes using computational tools (B3PW91/LANL2DZ//6-31G(d) level) in gas phase and DMSO. These palladium complexes prefer a boat and chair configuration for methylene and ethylene bridge length, respectively. In addition, phenyl and nitro complexes present a higher activation for Pd—C bonds while the most stable Pd⋯C interactions are observed for abnormal mode with methylene bridge. According to the energy decomposition analysis (EDA), hydrogen and phenyl complexes in both chelation modes present a better electrostatic character. Moreover, Pd⋯C interactions are stronger compared to the Pd⋯X ones for ethylene-bridged abnormal complexes (in gas phase). Finally, the donation/back-donation ratio (d/b) values reveal the Fischer carbene character of these [bis(NHC)]⋯[PdX2] interactions. Concerning the hybridization around the metal cation for the Pd—C bond, the sp2d type is observed for methylene-bridged palladium complexes while the sp3 one is observed for ethylene bridge complexes.

本文利用计算工具(B3PW91/LANL2DZ//6-31G(d) 水平),在气相和二甲基亚砜中探讨了亚烷基桥长度和配位模式对一系列 24 个亚烷基桥钯配合物反应活性的影响。这些钯配合物的亚甲基和亚乙基桥长度分别偏好舟型和椅型构型。此外,苯基和硝基络合物的 Pd-C 键活化程度较高,而在亚甲基桥的异常模式下观察到最稳定的 Pd⋯C 相互作用。根据能量分解分析(EDA),两种螯合模式下的氢和苯基络合物都具有更好的静电特性。此外,对于乙烯桥异常配合物(气相),Pd⋯C 的相互作用比 Pd⋯X 的相互作用更强。最后,捐赠/反捐赠比(d/b)值揭示了这些[双(NHC)]⋯[PdX2]相互作用的费歇尔碳烯特性。关于 Pd-C 键金属阳离子周围的杂化,亚甲基桥钯络合物观察到的是 sp2d 类型,而乙烯桥络合物观察到的是 sp3 类型。
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引用次数: 0
Neighborhood Face Index: A New Quantitative Structure Property Relationship (QSPR) Approach for Predicting Physical Properties of Polycyclic Chemical Compounds 邻域面指数:一种预测多环化合物物理性质的定量结构性质关系(QSPR)方法
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-10 DOI: 10.1002/qua.27524
Ali Raza, Muhammad Waheed Rasheed, Abid Mahboob, Mishal Ismaeel

Topological indices (TIs) are numerical parameters that characterize the biochemical and physio-chemical properties of compounds. These graph-based descriptors are valuable tools for predicting key attributes, such as melting points, boiling points, bond energies, and bond lengths, based on the molecular structures of the compounds. A variety of TIs have been developed, including the Randić index, Zagreb index, atom-bond connectivity index, geometric index, and harmonic index. In this work, we introduce a new topological index called the neighborhood face index, which demonstrates a strong correlation with various physical properties such as bond energies and boiling points, achieving a correlation coefficient of R0.9994$$ Rge 0.9994 $$. This indicates its robust predictive capability. Furthermore, the results are thoroughly analyzed using graphical tools to provide deeper insights.

拓扑指数(TIs)是表征化合物生化和物理化学性质的数值参数。这些基于图的描述符是基于化合物的分子结构预测关键属性(如熔点、沸点、键能和键长)的有价值的工具。已经开发了各种ti,包括randiski指数,Zagreb指数,原子键连通性指数,几何指数和谐波指数。在这项工作中,我们引入了一种新的拓扑指数,称为邻域面指数,它与各种物理性质(如键能和沸点)具有很强的相关性,相关系数R≥0.9994 $$ Rge 0.9994 $$。这表明其具有较强的预测能力。此外,使用图形工具对结果进行彻底分析,以提供更深入的见解。
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引用次数: 0
Combined Experimental and Computational Investigations of 4-Amino-2-Chloro-6,7-Dimethoxyquinazoline as Potential Anti-Alzheimer Agent 4-氨基-2-氯-6,7-二甲氧基喹唑啉作为潜在抗阿尔茨海默病药物的实验与计算结合研究
IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-12-10 DOI: 10.1002/qua.27527
Karthikeyan Asokan, Karthik Nallasamy, Sumathi Sivaraman, Jeyavijayan Subbiah, Selvarengan Paranthaman

Alzheimer's disease (AD) is a neurodegenerative condition that leads to the deterioration of brain cells, resulting in memory loss, thinking, and executive skills. In this work, 4-amino-2-chloro-6,7-dimethoxyquinazoline (ACDQ) has been studied using the 6–311++G(d,p) B3LYP functional of the density functional theory (DFT) approach utilizing a basis set. Geometry optimization and fundamental vibrational frequencies are calculated using the above method. The spectroscopic investigations such as FT-IR, FT-Raman, and UV–Vis spectra are performed on the selected compound. The time-dependent DFT calculations are performed in the gas and water phases to determine electronic properties and energy gap using the same basis set. Charge density distributions have been used to illustrate the energy gap between the highest occupied and lowest unoccupied molecular orbitals. Mulliken population analysis is performed to determine the atomic charges of ACDQ. From the natural bond orbital analysis, it is observed that there is a significant electron delocalization in ACDQ due to the presence of intramolecular interactions. To evaluate ACDQ's anti-Alzheimer potential, a molecular docking simulation is used to assess its structural stability and biological activity against proteins associated with Alzheimer's disease. Our docking study revealed that, ACDQ has a strong interaction with 4EY7 protein with binding energy of −8.1 kcal mol−1. Additionally, metrics such as the root mean square deviation (RMSD), root mean square fluctuation (RMSF), and the radius of gyration are considered (Rg) were computed using molecular dynamics simulations to evaluate the stability of the protein–ligand interaction. Studies on the ADMET prediction of ACDQ have also been carried out. The findings of the current study support the potential of ACDQ as an effective lead therapeutic for Alzheimer's disease.

阿尔茨海默病(AD)是一种神经退行性疾病,会导致脑细胞退化,导致记忆力丧失、思维能力和执行能力下降。本文采用密度泛函(DFT)方法中的6-311 ++G(d,p) B3LYP泛函,利用基集对4-氨基-2-氯-6,7-二甲氧基喹唑啉(ACDQ)进行了研究。利用该方法计算了结构的几何优化和基本振动频率。对所选化合物进行了FT-IR、FT-Raman和UV-Vis光谱研究。使用相同的基集,在气相和水相中进行时变DFT计算,以确定电子性质和能隙。电荷密度分布被用来说明最高已占分子轨道和最低未占分子轨道之间的能量差距。采用Mulliken居群分析确定ACDQ的原子荷数。从自然键轨道分析中可以观察到,由于分子内相互作用的存在,ACDQ中存在明显的电子离域。为了评估ACDQ的抗阿尔茨海默病潜力,采用分子对接模拟来评估其结构稳定性和对阿尔茨海默病相关蛋白的生物活性。我们的对接研究表明,ACDQ与4EY7蛋白有很强的相互作用,结合能为−8.1 kcal mol−1。此外,利用分子动力学模拟计算了诸如均方根偏差(RMSD)、均方根波动(RMSF)和旋转半径(Rg)等指标,以评估蛋白质-配体相互作用的稳定性。ADMET预测ACDQ的研究也已展开。目前的研究结果支持ACDQ作为治疗阿尔茨海默病的有效先导药物的潜力。
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引用次数: 0
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International Journal of Quantum Chemistry
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