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Recent advances in the social and developmental biology of the myxobacteria. 黏菌的社会和发育生物学的最新进展。
Pub Date : 1996-03-01 DOI: 10.1128/mr.60.1.70-102.1996
M Dworkin
INTRODUCTION .........................................................................................................................................................71 MOLECULAR PHYLOGENY.....................................................................................................................................71 SIGNALING ..................................................................................................................................................................71 A Signal ......................................................................................................................................................................71 B Signal ......................................................................................................................................................................74 C Signal......................................................................................................................................................................74 D Signal......................................................................................................................................................................75 E Signal ......................................................................................................................................................................75 Summary of Signaling..............................................................................................................................................76 OTHER EXTRACELLULAR DEVELOPMENTAL FACTORS .............................................................................76 Glucosamine, Phospholipase, Glycerol, and Autocides .......................................................................................76 INITIATION SIGNAL..................................................................................................................................................77 EXTRACELLULAR APPENDAGES ..........................................................................................................................77 Pili...............................................................................................................................................................................77 Fibrils .........................................................................................................................................................................77 FRUITING BODY FORMATION ..............................................................................................................................79 Cell Density ...............................................................................................................................................................79 Role of Motility .........................................................................................................................................................79 Aggre
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引用次数: 71
Genetic networks that regulate development in Dictyostelium cells. 调节盘形骨细胞发育的遗传网络。
Pub Date : 1996-03-01 DOI: 10.1128/MMBR.60.1.135-150.1996
W. Loomis
INTRODUCTION 135 AGGREGATION 135 Aggregation Gene Network 137 POSTAGGREGATION 138 Cell-Type-Specific Genes 138 Postaggregative Gene Network 139 CELL TYPE SPECIALIZATION 140 Network That Regulates Cell Type Specialization 141 CULMINATION 142 Network That Regulates Culmination 145 NETWORKS OF NETWORKS 146 ACKNOWLEDGMENTS 147 REFERENCES 147
135聚合聚合基因网络137后聚集138细胞类型特异性基因138后聚集基因网络139细胞类型特化140调节细胞类型特化的网络141顶点142调节顶点的网络145网络的网络146致谢147参考文献147
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引用次数: 80
Methanotrophic bacteria. Methanotrophic细菌。
Pub Date : 1996-01-01 DOI: 10.1128/mmbr.60.2.439-471.1996
R. S. Hanson, Thomas E Hanson
Methane-utilizing bacteria (methanotrophs) are a diverse group of gram-negative bacteria that are related to other members of the Proteobacteria. These bacteria are classified into three groups based on the pathways used for assimilation of formaldehyde, the major source of cell carbon, and other physiological and morphological features. The type I and type X methanotrophs are found within the gamma subdivision of the Proteobacteria and employ the ribulose monophosphate pathway for formaldehyde assimilation, whereas type II methanotrophs, which employ the serine pathway for formaldehyde assimilation, form a coherent cluster within the beta subdivision of the Proteobacteria. Methanotrophic bacteria are ubiquitous. The growth of type II bacteria appears to be favored in environments that contain relatively high levels of methane, low levels of dissolved oxygen, and limiting concentrations of combined nitrogen and/or copper. Type I methanotrophs appear to be dominant in environments in which methane is limiting and combined nitrogen and copper levels are relatively high. These bacteria serve as biofilters for the oxidation of methane produced in anaerobic environments, and when oxygen is present in soils, atmospheric methane is oxidized. Their activities in nature are greatly influenced by agricultural practices and other human activities. Recent evidence indicates that naturally occurring, uncultured methanotrophs represent new genera. Methanotrophs that are capable of oxidizing methane at atmospheric levels exhibit methane oxidation kinetics different from those of methanotrophs available in pure cultures. A limited number of methanotrophs have the genetic capacity to synthesize a soluble methane monooxygenase which catalyzes the rapid oxidation of environmental pollutants including trichloroethylene.
利用甲烷的细菌(甲烷营养菌)是一种不同的革兰氏阴性细菌,与变形菌门的其他成员有关。根据吸收甲醛的途径、细胞碳的主要来源以及其他生理和形态特征,这些细菌被分为三组。I型和X型甲烷氧化菌存在于变形菌门的gamma分支中,采用单磷酸核酮糖途径进行甲醛同化,而II型甲烷氧化菌采用丝氨酸途径进行甲醛同化,在变形菌门的beta分支中形成一个一致的集群。甲烷营养细菌无处不在。II型细菌似乎在甲烷含量相对较高、溶解氧含量较低、氮和/或铜的组合浓度有限的环境中更容易生长。I型甲烷氧化菌似乎在甲烷受限、氮和铜组合水平相对较高的环境中占主导地位。这些细菌作为厌氧环境中产生的甲烷氧化的生物过滤器,当土壤中存在氧气时,大气中的甲烷被氧化。它们在自然界的活动受到农业实践和其他人类活动的极大影响。最近的证据表明,自然发生的,未经培养的甲烷氧化菌代表了新属。能够在大气水平氧化甲烷的甲烷氧化菌表现出与纯培养物中甲烷氧化菌不同的甲烷氧化动力学。有限数量的甲烷氧化菌具有合成可溶性甲烷单加氧酶的遗传能力,该酶能催化包括三氯乙烯在内的环境污染物的快速氧化。
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引用次数: 1345
Role of nitric oxide in parasitic infections. 一氧化氮在寄生虫感染中的作用。
Pub Date : 1995-12-01 DOI: 10.1128/mr.59.4.533-547.1995
S L James

Nitric oxide is produced by a number of different cell types in response to cytokine stimulation and thus has been found to play a role in immunologically mediated protection against a growing list of protozoan and helminth parasites in vitro and in animal models. The biochemical basis of its effects on the parasite targets appears to involve primarily inactivation of enzymes crucial to energy metabolism and growth, although it has other biologic activities as well. NO is produced not only by macrophages and macrophage-like cells commonly associated with the effector arm of cell-mediated immune reactivity but also by cells commonly considered to lie outside the immunologic network, such as hepatocytes and endothelial cells, which are intimately involved in the life cycle of a number of parasites. NO production is stimulated by gamma interferon in combination with tumor necrosis factor alpha or other secondary activation signals and is regulated by a number of cytokines (especially interleukin-4, interleukin-10, and transforming growth factor beta) and other mediators, as well as through its own inherent inhibitory activity. The potential for design of prevention and/or intervention approaches against parasitic infection (e.g., vaccination or combination chemo- and immunotherapy strategies) on the basis of induction of cell-mediated immunity and NO production appears to be great, but the possible pathogenic consequences of overproduction of NO must be taken into account. Moreover, more research on the role and regulation of NO in human parasitic infection is needed before its possible clinical relevance can be determined.

一氧化氮是由许多不同类型的细胞在细胞因子刺激下产生的,因此在体外和动物模型中已经发现,一氧化氮在免疫介导的保护中对越来越多的原生动物和蠕虫寄生虫起作用。其作用于寄生虫目标的生化基础似乎主要涉及对能量代谢和生长至关重要的酶的失活,尽管它也有其他生物活性。一氧化氮不仅由巨噬细胞和巨噬细胞样细胞产生,这些细胞通常与细胞介导的免疫反应效应臂有关,而且通常被认为位于免疫网络之外的细胞,如肝细胞和内皮细胞,也会产生一氧化氮,这些细胞与许多寄生虫的生命周期密切相关。NO的产生受γ干扰素联合肿瘤坏死因子α或其他次生激活信号的刺激,并受多种细胞因子(特别是白细胞介素-4、白细胞介素-10和转化生长因子β)和其他介质的调节,并通过其自身固有的抑制活性。在诱导细胞介导的免疫和一氧化氮产生的基础上,设计预防和/或干预寄生虫感染的方法(例如,疫苗接种或化疗和免疫治疗联合策略)的潜力似乎很大,但必须考虑到一氧化氮过量产生的可能的致病后果。此外,NO在人类寄生虫感染中的作用和调控还需要更多的研究,才能确定其可能的临床意义。
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引用次数: 23
Streptococcus pneumoniae: virulence factors, pathogenesis, and vaccines. 肺炎链球菌:毒力因素、发病机制和疫苗。
Pub Date : 1995-12-01 DOI: 10.1128/MMBR.59.4.591-603.1995
E. AlonsoDeVelasco, A. Verheul, J. Verhoef, H. Snippe
Although pneumococcal conjugate vaccines are close to being licensed, a more profound knowledge of the virulence factors responsible for the morbidity and mortality caused by Streptococcus pneumoniae is necessary. This review deals with the major structures of pneumococci involved in the pathogenesis of pneumococcal disease and their interference with the defense mechanisms of the host. It is well known that protection against S. pneumoniae is the result of phagocytosis of invading pathogens. For this process, complement and anticapsular polysaccharide antibodies are required. Besides, relatively recent experimental data suggest that protection is also mediated by the removal of disintegrating pneumococci and their degradation products (cell wall, pneumolysin). These structures seem to be major contributors to illness and death caused by pneumococci. An effective conjugate vaccine should therefore preferably include the capsular polysaccharide and at least one of these inflammatory factors.
尽管肺炎球菌结合疫苗即将获得许可,但对导致肺炎链球菌发病率和死亡率的毒力因素有更深入的了解是必要的。本文综述了参与肺炎球菌疾病发病机制的肺炎球菌的主要结构及其对宿主防御机制的干扰。众所周知,对肺炎链球菌的保护是入侵病原体吞噬的结果。在这个过程中,需要补体和抗囊多糖抗体。此外,相对较新的实验数据表明,这种保护也可通过清除分解的肺炎球菌及其降解产物(细胞壁、溶气素)来介导。这些结构似乎是肺炎球菌引起疾病和死亡的主要原因。因此,有效的结合疫苗最好包括荚膜多糖和这些炎症因子中的至少一种。
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引用次数: 382
Genetic elements of plant viruses as tools for genetic engineering. 植物病毒的遗传因子作为基因工程的工具。
Pub Date : 1995-12-01 DOI: 10.1128/mr.59.4.548-578.1995
A R Mushegian, R J Shepherd

Viruses have developed successful strategies for propagation at the expense of their host cells. Efficient gene expression, genome multiplication, and invasion of the host are enabled by virus-encoded genetic elements, many of which are well characterized. Sequences derived from plant DNA and RNA viruses can be used to control expression of other genes in vivo. The main groups of plant virus genetic elements useful in genetic engineering are reviewed, including the signals for DNA-dependent and RNA-dependent RNA synthesis, sequences on the virus mRNAs that enable translational control, and sequences that control processing and intracellular sorting of virus proteins. Use of plant viruses as extrachromosomal expression vectors is also discussed, along with the issue of their stability.

病毒已经发展出以牺牲宿主细胞为代价的成功繁殖策略。有效的基因表达、基因组增殖和入侵宿主是由病毒编码的遗传元件实现的,其中许多已被很好地表征。来自植物DNA和RNA病毒的序列可用于控制体内其他基因的表达。本文综述了在基因工程中有用的植物病毒遗传元件的主要类群,包括dna依赖和RNA依赖的RNA合成信号,病毒mrna上能够进行翻译控制的序列,以及控制病毒蛋白加工和细胞内分选的序列。本文还讨论了植物病毒作为染色体外表达载体的应用及其稳定性问题。
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引用次数: 0
Production and function of cytokines in natural and acquired immunity to Candida albicans infection. 自然免疫和获得性免疫对白色念珠菌感染的细胞因子的产生和功能。
Pub Date : 1995-12-01 DOI: 10.1128/mr.59.4.646-672.1995
R B Ashman, J M Papadimitriou

Host resistance against infections caused by the yeast Candida albicans is mediated predominantly by polymorphonuclear leukocytes and macrophages. Antigens of Candida stimulate lymphocyte proliferation and cytokine synthesis, and in both humans and mice, these cytokines enhance the candidacidal functions of the phagocytic cells. In systemic candidiasis in mice, cytokine production has been found to be a function of the CD4+ T helper (Th) cells. The Th1 subset of these cells, characterized by the production of gamma interferon and interleukin-2, is associated with macrophage activation and enhanced resistance against reinfection, whereas the Th2 subset, which produces interleukins-4, -6, and -10, is linked to the development of chronic disease. However, other models have generated divergent data. Mucosal infection generally elicits Th1-type cytokine responses and protection from systemic challenge, and identification of cytokine mRNA present in infected tissues of mice that develop mild or severe lesions does not show pure Th1- or Th2-type responses. Furthermore, antigens of C. albicans, mannan in particular, can induce suppressor cells that modulate both specific and nonspecific cellular and humoral immune responses, and there is an emerging body of evidence that molecular mimicry may affect the efficiency of anti-Candida responses within defined genetic contexts.

宿主抵抗由白色念珠菌引起的感染主要是由多形核白细胞和巨噬细胞介导的。念珠菌抗原刺激淋巴细胞增殖和细胞因子合成,在人和小鼠中,这些细胞因子增强了吞噬细胞的杀念珠菌功能。在小鼠的系统性念珠菌病中,细胞因子的产生被发现是CD4+ T辅助细胞(Th)的功能。这些细胞的Th1亚群以产生γ干扰素和白细胞介素-2为特征,与巨噬细胞活化和增强对再感染的抵抗力有关,而Th2亚群产生白细胞介素-4、-6和-10,与慢性疾病的发展有关。然而,其他模型产生了不同的数据。粘膜感染通常会引起Th1型细胞因子反应和对全身攻击的保护,而在发生轻度或重度病变的小鼠感染组织中存在的细胞因子mRNA的鉴定并未显示出纯粹的Th1型或th2型反应。此外,白色念珠菌的抗原,特别是甘露聚糖,可以诱导抑制细胞调节特异性和非特异性细胞和体液免疫反应,并且有新的证据表明,分子模仿可能会影响特定遗传背景下抗念珠菌反应的效率。
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引用次数: 2
Natural plasmids of filamentous fungi. 丝状真菌的天然质粒。
Pub Date : 1995-12-01 DOI: 10.1128/mr.59.4.673-685.1995
A J Griffiths

Among eukaryotes, plasmids have been found in fungi and plants but not in animals. Most plasmids are mitochondrial. In filamentous fungi, plasmids are commonly encountered in isolates from natural populations. Individual populations may show a predominance of one type, but some plasmids have a global distribution, often crossing species boundaries. Surveys have shown that strains can contain more than one type of plasmid and that different types appear to be distributed independently. In crosses, plasmids are generally inherited maternally. Horizontal transmission is by cell contact. Circular plasmids are common only in Neurospora spp., but linear plasmids have been found in many fungi. Circular plasmids have one open reading frame (ORF) coding for a DNA polymerase or a reverse transcriptase. Linear plasmids generally have two ORFs, coding for presumptive DNA and RNA polymerases with amino acid motifs showing homology to viral polymerases. Plasmids often attain a high copy number, in excess of that of mitochondrial DNA. Linear plasmids have a protein attached to their 5' end, and this is presumed to act as a replication primer. Most plasmids are neutral passengers, but several linear plasmids integrate into mitochondrial DNA, causing death of the host culture. Inferred amino acid sequences of linear plasmid ORFs have been used to plot phylogenetic trees, which show a fair concordance with conventional trees. The circular Neurospora plasmids have replication systems that seem to be evolutionary intermediates between the RNA and the DNA worlds.

在真核生物中,在真菌和植物中发现了质粒,但在动物中没有发现。大多数质粒是线粒体。在丝状真菌中,质粒通常在自然种群分离物中遇到。个别种群可能表现出一种类型的优势,但一些质粒具有全球分布,经常跨越物种边界。调查显示,菌株可能含有不止一种类型的质粒,而且不同类型的质粒似乎是独立分布的。在杂交中,质粒通常是母系遗传的。水平传播是通过细胞接触。环状质粒仅在神经孢子菌中常见,但在许多真菌中发现了线状质粒。环状质粒具有一个编码DNA聚合酶或逆转录酶的开放阅读框(ORF)。线性质粒通常有两个orf,编码假定的DNA和RNA聚合酶,氨基酸基序与病毒聚合酶具有同源性。质粒通常获得高拷贝数,超过线粒体DNA。线性质粒的5'端有一个蛋白质,这被认为是复制引物。大多数质粒是中性的乘客,但一些线性质粒整合到线粒体DNA中,导致宿主培养物死亡。线性质粒orf的推断氨基酸序列已被用于绘制系统发育树,显示出与常规树的公平一致性。环状神经孢子菌质粒具有复制系统,似乎是RNA和DNA世界之间的进化中间体。
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引用次数: 7
Nitrogen control in bacteria. 细菌中的氮控制。
Pub Date : 1995-12-01 DOI: 10.1128/MMBR.59.4.604-622.1995
M. Merrick, R. Edwards
Nitrogen metabolism in prokaryotes involves the coordinated expression of a large number of enzymes concerned with both utilization of extracellular nitrogen sources and intracellular biosynthesis of nitrogen-containing compounds. The control of this expression is determined by the availability of fixed nitrogen to the cell and is effected by complex regulatory networks involving regulation at both the transcriptional and posttranslational levels. While the most detailed studies to date have been carried out with enteric bacteria, there is a considerable body of evidence to show that the nitrogen regulation (ntr) systems described in the enterics extend to many other genera. Furthermore, as the range of bacteria in which the phenomenon of nitrogen control is examined is being extended, new regulatory mechanisms are also being discovered. In this review, we have attempted to summarize recent research in prokaryotic nitrogen control; to show the ubiquity of the ntr system, at least in gram-negative organisms; and to identify those areas and groups of organisms about which there is much still to learn.
原核生物的氮代谢涉及大量酶的协调表达,这些酶与细胞外氮源的利用和细胞内含氮化合物的生物合成有关。这种表达的控制是由细胞中固定氮的可用性决定的,并受到复杂的调控网络的影响,包括转录和翻译后水平的调控。虽然迄今为止对肠道细菌进行了最详细的研究,但有相当多的证据表明,肠道中描述的氮调节(ntr)系统可扩展到许多其他属。此外,随着研究氮控制现象的细菌范围的扩大,新的调控机制也被发现。本文综述了近年来在原核生物氮调控方面的研究进展;为了显示NTR系统的普遍性,至少在革兰氏阴性菌中;并找出那些仍有很多有待了解的领域和生物群体。
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引用次数: 649
Streptococcus pneumoniae: virulence factors, pathogenesis, and vaccines. 肺炎链球菌:毒力因素、发病机制和疫苗。
Pub Date : 1995-12-01 DOI: 10.1128/mr.59.4.591-603.1995
E AlonsoDeVelasco, A F Verheul, J Verhoef, H Snippe

Although pneumococcal conjugate vaccines are close to being licensed, a more profound knowledge of the virulence factors responsible for the morbidity and mortality caused by Streptococcus pneumoniae is necessary. This review deals with the major structures of pneumococci involved in the pathogenesis of pneumococcal disease and their interference with the defense mechanisms of the host. It is well known that protection against S. pneumoniae is the result of phagocytosis of invading pathogens. For this process, complement and anticapsular polysaccharide antibodies are required. Besides, relatively recent experimental data suggest that protection is also mediated by the removal of disintegrating pneumococci and their degradation products (cell wall, pneumolysin). These structures seem to be major contributors to illness and death caused by pneumococci. An effective conjugate vaccine should therefore preferably include the capsular polysaccharide and at least one of these inflammatory factors.

尽管肺炎球菌结合疫苗即将获得许可,但对导致肺炎链球菌发病率和死亡率的毒力因素有更深入的了解是必要的。本文综述了参与肺炎球菌疾病发病机制的肺炎球菌的主要结构及其对宿主防御机制的干扰。众所周知,对肺炎链球菌的保护是入侵病原体吞噬的结果。在这个过程中,需要补体和抗囊多糖抗体。此外,相对较新的实验数据表明,这种保护也可通过清除分解的肺炎球菌及其降解产物(细胞壁、溶气素)来介导。这些结构似乎是肺炎球菌引起疾病和死亡的主要原因。因此,有效的结合疫苗最好包括荚膜多糖和这些炎症因子中的至少一种。
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引用次数: 416
期刊
Microbiological reviews
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