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Гуанідінійвмісний олігомер як інгібітор мікробної корозії металу 作为金属微生物腐蚀抑制剂的含胍低聚物
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-23 DOI: 10.15407/microbiolj86.01.014
D.R. Abdulina, M.Ya. Vortman, Zh.P. Kopteva, G.O. Iutynska, A.E. Kopteva, V.N. Lemeshko, V. V. Shevchenko, L. Biliavska
Guanidinium-containing oligomers, a poorly studied class of organic compounds, have attracted attention due to their bactericidal properties. A guanidinium-containing oligomer based on an aliphatic oligoepoxide is a newly synthesized substance with bactericidal activity, which gives it the prospects for use as a microbial corrosion inhibitor. Aim. The goal of the study was to synthesize oligomeric alkyl substituted guanidinium bromide and study of its anticorrosive properties in the presence of steel under the influence of corrosive active sulfate-reducing bacteria. Methods. The guanidine-containing alkyl substituted oligomer was obtained by the reaction of the aliphatic oligoepoxide DEG-1 with guanidine, followed by interaction with alkyl bromide. The anticorrosive properties of the guanidine-containing oligomer were studied using collection strains of sulfate-reducing bacteria: UCM B-11503 Desulfovibrio sp.10, UCM B-11501 Desulfovibrio desulfuricans DSM642, and UCM B-11502 Desulfovibrio vulgaris DSM644. The sulfate-reducing bacteria were grown on Postgate В medium for 14 days at a temperature of 28 ± 2 °C. The number of bacteria was determined by the method of tenfold dilution. The corrosion rate was determined by the gravimetric method. The physicochemical parameters of pH and redox potential of the bacterial culture liquid were studied by the potentiometric method. The accumulation of hydrogen sulfide in the culture liquid was determined by the iodometric method. Lipolytic activity was studied spectrophotometrically using a KFK-3 device by reaction with p-nitrophenyl palmitate, catalase activity — using 0.03% hydrogen peroxide, which formed a stable colored complex with a 4% molybdenum diphosphate solution. The specific activity of the studied enzymes was expressed as unit ∙ mg-1 protein. Protein was determined in the supernatant by the conventional Lowry method. Results. It was shown that the oligomer based on aliphatic oligoepoxide has biocidal properties. A significant inhibition of the development of sulfate-reducing bacteria (SRB) was observed after the oligomer was added; only dozens of bacterial cells were detected in the medium after the exposure period. The corrosion rate of steel in the presence of SBR without addition of inhibitors was 0.15 — 0.35 mg/cm2∙h. The addition of DPC (a quaternary ammonium compound based on N-decylpyridinium chloride) (Kyiv Polytechnic Institute (KPI), Ukraine) to the culture medium led to a decrease in the steel corrosion rate to 0.032 — 0.047 mg ∙ cm-2  h-1 (by 6.5—10.6 times). In the presence of Armohib CI-28 inhibitor (based on Diamine Ethoxylate) (Akzonobel, Holland), the corrosion rate was reduced to 0.02—0.039 mg ∙ cm-2  h-1 (by 4.2 — 12.7 times). The addition of guanidinium-containing oligomer to the medium with bacteria reduced the corrosion rate to 0.075—0.079 mg/cm2 ∙ h (by 2.5—2.7 times). According to the mass loss of steel samples, the degree of metal protection against microbial corrosion in
含胍低聚物是一类研究较少的有机化合物,因其杀菌特性而备受关注。基于脂肪族低聚环氧化物的含胍低聚物是一种新合成的物质,具有杀菌活性,因此有望用作微生物腐蚀抑制剂。研究目的本研究的目的是合成低聚烷基取代的溴化胍,并研究其在腐蚀性活跃的硫酸盐还原菌影响下对钢材的防腐性能。研究方法通过脂肪族低聚环氧化物 DEG-1 与胍反应,然后与烷基溴作用,得到含胍的烷基取代低聚物。研究人员使用硫酸盐还原菌的菌种对含胍低聚物的防腐特性进行了研究:UCM B-11503 Desulfovibrio sp.10、UCM B-11501 Desulfovibrio desulfuricans DSM642 和 UCM B-11502 Desulfovibrio vulgaris DSM644。硫酸盐还原菌在 Postgate В 培养基上生长 14 天,温度为 28 ± 2 °C。细菌数量用十倍稀释法测定。腐蚀速率采用重量法测定。细菌培养液的 pH 值和氧化还原电位等理化参数采用电位计法进行研究。用碘量法测定了培养液中硫化氢的积累。脂肪分解活性用 KFK-3 装置通过与对硝基苯棕榈酸酯反应进行分光光度法研究;过氧化氢酶活性--使用 0.03%的过氧化氢,它与 4%的二磷酸钼溶液形成稳定的有色复合物。所研究的酶的特定活性以单位 ∙ mg-1 蛋白质表示。上清液中的蛋白质用传统的洛里法测定。结果表明研究表明,基于脂肪族低聚环氧化物的低聚物具有杀菌特性。加入低聚物后,硫酸盐还原菌(SRB)的生长受到了明显的抑制;暴露期结束后,培养基中只检测到几十个细菌细胞。在不添加抑制剂的情况下,SBR 对钢材的腐蚀速率为 0.15 - 0.35 mg/cm2-h。在培养基中添加 DPC(一种基于 N-decylpyridinium chloride 的季铵盐化合物)(乌克兰基辅理工学院 (KPI))后,钢的腐蚀速率降低到 0.032 - 0.047 mg ∙ cm-2 h-1 (6.5-10.6 倍)。在 Armohib CI-28 抑制剂(基于乙氧基化二胺)(荷兰 Akzonobel 公司)的作用下,腐蚀速率降低到 0.02-0.039 毫克 ∙ 厘米-2 小时-1(降低 4.2-12.7 倍)。在含有细菌的培养基中加入含胍低聚物,腐蚀速率可降至 0.075-0.079 mg/cm2 ∙ h(降低 2.5-2.7 倍)。根据钢材样品的质量损失,在含胍低聚物存在的情况下,金属对微生物腐蚀的保护程度为 60.15%-63.17%。结论所获得的数据表明,基于脂肪族低聚环氧树脂的含胍低聚物具有杀菌和防腐特性,有望用作抗微生物诱导腐蚀的一种手段。
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引用次数: 0
Вивчення життєздатних бактеріофагів за допомогою активації псевдолізогенного стану Pectobacterium carotovorum 通过激活果胶杆菌的假溶解状态研究有活力的噬菌体
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-23 DOI: 10.15407/microbiolj86.01.051
L.V. Romaniuk, M.A. Zlatohurska, T.Yu. Gorb, F.I. Tovkach
The rare occurrence of viable bacteriophages is an issue in studying bacterial-phage systems of the phytopathogenic bacterium Pectobacterium carotovorum subsp. carotovorum (Pcc). Aim. To obtain viable bacteriophages by activating pseudolysogeny of the Pcc strains. Methods. To obtain bacteriophage F66, isogenic clones of Nalr mutants of strains Pcc 66A and Pcc M2-4 were used. To study the properties of the phage, ultracentrifugation of viral particles, electron microscopy, electrophoretic separation, and comparative restriction analysis of virion DNA were used. Results. It was shown that some isogenic clones of Nalr -mutants of Pcc 66A and Pcc M2-4 can produce viable bacteriophages under conditions of intensive aeration. At the same time, induced phages are able to reproduce on the parent bacterial strains, which they were isolated from (pseudolysogenic response). A pure line was obtained for the phage isolate induced from pseudolysogenic Pcc 66A Nalr by consecutive single colony passages. This phage, named F66, was shown to be temperate and able to lyse and lysogenize strains of pectolytic bacteria isolated from soft rot affected potato tubers. Phage F66 has а virion with the A1 morphotype characterized by an isometric head with an average diameter of 52.0 ± 2.1 nm and a contractile tail with a length of 115.4 ± 3.2 nm. Showing low stability under environmental conditions, phage F66 differs significantly from the temperate phage ZF40 P. carotovorum, which has a similar virion morphology. Compared phages also differ in the restriction fragment patterns obtained using endonucleases HindIII, BamHI, and HpaI. Conclusions. Temperate phage F66 is a novel P. carotovorum virus. The method for activating the pseudolysogenic state proposed in the article is useful for obtaining viruses of phytopathogenic bacteria.
在研究植物病原菌 Pectobacterium carotovorum subsp. carotovorum(Pcc)的细菌-噬菌体系统时,很少出现有活力的噬菌体。目的是通过激活 Pcc 菌株的假溶酶原获得有活力的噬菌体。方法。为了获得噬菌体 F66,使用了菌株 Pcc 66A 和 Pcc M2-4 的 Nalr 突变体的同源克隆。为了研究噬菌体的特性,采用了病毒颗粒超速离心、电子显微镜、电泳分离和病毒 DNA 限制性比较分析等方法。结果显示结果表明,Pcc 66A 和 Pcc M2-4 的 Nalr 突变体的一些同源克隆在强化通气条件下能产生有活力的噬菌体。同时,诱导的噬菌体还能在它们分离出来的亲本细菌菌株上繁殖(假溶解反应)。通过连续的单菌落传代,从假溶源性 Pcc 66A Nalr 中诱导分离出的噬菌体获得了纯系。这种噬菌体被命名为 F66,已被证明是温性噬菌体,能够裂解和溶解从受软腐病影响的马铃薯块茎中分离出来的果胶溶解菌株。噬菌体 F66 具有 A1 形态的 а 病毒,其特征是头部等距,平均直径为 52.0 ± 2.1 nm,尾部收缩,长度为 115.4 ± 3.2 nm。噬菌体 F66 在环境条件下表现出较低的稳定性,与温带噬菌体 ZF40 P. carotovorum 有很大不同,后者具有相似的病毒形态。使用内切酶 HindIII、BamHI 和 HpaI 获得的限制性片段模式也不同。结论温带噬菌体 F66 是一种新型 P. carotovorum 病毒。文章中提出的激活假溶解状态的方法有助于获得植物病原菌的病毒。
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引用次数: 0
Активні компоненти флавоноїдного складу «Протефлазид» гальмують репродукцію вірусу грипу: можливі молекулярні мішені взаємодії Proteflazid 的黄酮类成分中的活性成分可抑制流感病毒的繁殖:可能的相互作用分子靶点
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-23 DOI: 10.15407/microbiolj86.01.026
M.A. Arkhypova, L. G. Palchykovska, M.O. Platonov, M.P. Zavelevich, O. M. Deriabin, V.P. Atamaniuk, D.B. Starosyla, S. L. Rybalko
The search for substances possessing antiviral activities, in particular anti-influenza activity, is of importance for designing new drugs that may be effective in combating viral infections. The antiviral substances of the natural origin such as flavonoids and their derivatives are in the focus of numerous studies. The topical problem is the elucidation of the mechanisms of the interaction between flavonoid substances and the virus-specific targets in infected cells. Aim. To assess the activity of the flavonoid-enriched composition containing the biologically active substances of Proteflazidum against influenza virus in vitro and in vivo and to analyze in silico the putative interactions of the flavonoid components of the composition with PB2 subunit of viral RNA-polymerase. Methods. The anti-influenza effects of flavonoid-enriched composition prepared from the extracts of Deschampsia caespitosa L. and Calamagrostis epigeios L. were assessed in vitro in MDCK cells and in vivo in white outbred mice. Virion RNA was analyzed by RT-PCR with the primers detecting the transcripts of PB1 and PB2 subunits of viral RNA-polymerase and hemagglutinin. The potential interaction of the representative flavonoids of the composition with PB2 subunit of RNA-polymerase was analyzed in silico by molecular docking. Results. The composition under study inhibits effectively replication of А/FM/1/47 (H1N1) strain of influenza virus in vitro and protects the mice against flu infection both in therapeutic and preventive modes of its administration. According to the molecular docking findings, all three major flavonoid compounds of the composition, quercetin, luteolin, and apigenin, interact similarly with the PB2 domain of viral RNA-polymerase. Conclusions. The flavonoid composition containing the biologically active substances of Proteflazidum could be considered as the anti-flu drug with the PB2 subunit of viral RNA-polymerase being one of its potential molecular targets.
寻找具有抗病毒活性的物质,特别是具有抗流感活性的物质,对于设计出能有效对抗病毒感染的新药物非常重要。黄酮类化合物及其衍生物等天然抗病毒物质是众多研究的焦点。目前的热点问题是阐明类黄酮物质与受感染细胞中病毒特异性靶点之间的相互作用机制。研究目的评估含有 Proteflazidum 生物活性物质的黄酮类富集成分在体外和体内抗流感病毒的活性,并对该成分中的黄酮类成分与病毒 RNA 聚合酶 PB2 亚基的推测相互作用进行硅学分析。研究方法在体外 MDCK 细胞和体内白种小鼠中评估了从 Deschampsia caespitosa L. 和 Calamagrostis epigeios L. 提取物中制备的富含黄酮类成分的抗流感效果。病毒 RNA 通过 RT-PCR 进行分析,引物检测病毒 RNA 聚合酶和血凝素的 PB1 和 PB2 亚基的转录本。通过分子对接,对成分中具有代表性的黄酮类化合物与 RNA 聚合酶 PB2 亚基的潜在相互作用进行了模拟分析。结果显示所研究的组合物在体外能有效抑制流感病毒А/FM/1/47(H1N1)株的复制,并在治疗和预防模式下保护小鼠免受流感感染。分子对接研究结果表明,槲皮素、木犀草素和芹菜素这三种主要黄酮类化合物与病毒 RNA 聚合酶的 PB2 结构域具有相似的相互作用。结论含有Proteflazidum生物活性物质的类黄酮成分可被视为抗流感药物,而病毒RNA聚合酶的PB2亚基是其潜在的分子靶点之一。
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引用次数: 0
Xanthomonas fuscans subsp. fuscans — a Pathogen of Small Brown Spot of Legumes Xanthomonas fuscans subsp.
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-23 DOI: 10.15407/microbiolj86.01.057
Т.Т. Гнатюк, Н.В. Житкевич, В.П. Патика
Xanthomonas fuscans subsp. fuscans is known as an obligate phytopathogen — the pathogen of small brown spot of beans that gradually expands the range of host plants and spreads worldwide on legumes. The review provides data on the problems of the pathogen’s systematics and its change depending on the new research and improvement of methods for studying biological properties. Historical data on the first stages of isolation of X. fuscans subsp. fuscans from bean and new stages of its spread and isolation from soybean in Ukraine, after which the pathogen moved from the monophage to polyphage status within the same plant family. The importance of X. fuscans subsp. fuscans as a potentially dangerous phytopathogen, as evidenced by the presence of its samples in many collections of living microorganisms in the world and the quarantine status of the pathogen in a number of European countries are underlined. It has been shown that the phytopathogen X. fuscans subsp. fuscans does not differ significantly from other xanthomonads in terms of its cultural, morphological, physiological, and biochemical properties, especially those that cause diseases of leguminous plants. At the same time, the only but the main feature of this bacterial culture is emphasized — the increased amount and activity of the intracellular enzyme tyrosinase, which distinguishes X. fuscans from all other bacterial phytopathogens and not only among xanthomonads. The variants of the stage of synthesis of tyrosinase and melanin in bacteria, due to which the black-brown pigment is formed, and the lack of research on the pathway of tyrosinase synthesis in phytopathogenic bacteria, in particular X. fuscans subsp. fuscans, are analized. The data on genotypic properties of X. fuscans subsp. fuscans, its affinity with other pathogens of the genus Xanthomonas that cause diseases of leguminous plants, and the possible role of the phenomenon of «horizontal gene transfer» in their affinity along with differences in biological properties are considered. The analyzed literature indicates the potential danger of the causative agent of small brown spot of legumes and the need for constant monitoring of the spread and study of its biological properties to develop methods for controling the spread of X. fuscans subsp. fuscans.
黄单胞菌(Xanthomonas fuscans subsp. fuscans)是一种已知的强制性植物病原体--豆类小褐斑病的病原体,它逐渐扩大寄主植物的范围,并在豆科植物上传播到世界各地。这篇综述提供了有关病原体系统学问题的数据,以及根据新的研究和生物特性研究方法的改进而发生的变化。关于从豆类中分离出 X. fuscans subsp. fuscans 的最初阶段的历史数据,以及在乌克兰从大豆中传播和分离出该病原体的新阶段,此后该病原体在同一植物家族中从单噬菌体状态转变为多噬菌体状态。X. fuscans subsp. fuscans 作为一种具有潜在危险性的植物病原体的重要性得到了强调,其样本存在于世界上许多活体微生物保藏中以及该病原体在一些欧洲国家的检疫地位都证明了这一点。研究表明,植物病原体 X. fuscans subsp. fuscans 在文化、形态、生理和生化特性方面与其他黄单胞菌并无显著差异,尤其是那些导致豆科植物病害的黄单胞菌。与此同时,这种细菌培养物唯一但也是最主要的特征得到了强调--细胞内酪氨酸酶的数量和活性增加,这使 X. fuscans 与所有其他细菌性植物病原体区分开来,而不仅仅是在黄单胞菌中区分开来。本文分析了细菌中酪氨酸酶和黑色素合成阶段的变异,黑褐色色素就是在这一阶段形成的,同时还分析了植物病原菌,特别是 X. fuscans 亚种,缺乏对酪氨酸酶合成途径的研究。fuscans subsp. fuscans 的基因型特性、它与其他导致豆科植物病害的黄单胞菌属病原体的亲缘关系、"水平基因转移 "现象在它们的亲缘关系和生物特性差异中可能发挥的作用等方面的数据。分析的文献表明,豆科植物小褐斑病的致病菌具有潜在的危险性,需要不断监测其传播情况并研究其生物特性,以制定控制福氏黄单胞菌亚种传播的方法。
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引用次数: 0
Характеристика генів інтегронів клінічних ізолятів Pseudomonas aeruginosa, які реалізують резистентність до антибіотиків та біоплівкоутворення цими штамами 铜绿假单胞菌临床分离株整合子基因的特征,这些基因可使这些菌株产生抗生素耐药性并形成生物膜
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-23 DOI: 10.15407/microbiolj86.01.003
A.F. Alfarras, W.A. Al-Daraghi
Pseudomonas aeruginosa is a bacterium that holds significant clinical and epidemiological significance. It serves as the principal etiological cause of opportunistic infections in individuals with impaired immune systems. Integrons are known to have a notable impact on Gram-negative bacteria, particularly in the context of P. aeruginosa, a bacterium recognized for its ability to develop resistance to antimicrobial drugs. Aim. To systematically characterize and detect integron genes (intI, intII, intIII) with antibiotic-resistant and biofilm-forming capabilities in isolated P. aeruginosa. Methods. A total of 209 samples were collected from Al Yarmouk Teaching Hospital in Baghdad City, Iraq to isolate P. aeruginosa. The process of bacterial identification was carried out phenotypically and by biochemical tests. Antibiotic susceptibility was measured using the Vitek2 system. Biofilm quantification was done by the microtiter method. The PCR approach was employed to assess the presence of class 1, 2, and 3 integrons. Results. P. aeruginosa was identified in 83 isolates by using a combination of morphological and biochemical examinations where all isolates showed the ability to grow a selective medium on cetrimide agar for P. aeruginosa. The results also showed significant variances (p < 0.05) among the percentage of a number of samples and isolated P. aeruginosa. The burn and wound infection scored the highest percentages (25% and 19%) based on the positivity of P. aeruginosa, whereas burn and ear sites scored the highest percentage (58% and 50%). Also, the isolates show the ability to form biofilm at a percentage of 68.7% with resistance to a high number of antibiotics. The multidrug-resistant and sensitive P. aeruginosa isolates scored high percentages (49.4% and 34.9%) whereas potentially pan drug-resistant and extensively drug-resistant isolates scored low percentages (2.4% and 13.3%). PCR results showed that integron I scored the highest percentage (100%) compared to integron 2 found in 3 (10%) isolates, and no intI3 gene was detected in any of the P. aeruginosa isolates. Conclusions. Overall, the findings of the present investigation indicate that integrons and biofilm development are recognized as significant factors contributing to antibiotic resistance in P. aeruginosa. The prevalence of class 1 integrons is shown to be significantly high in all bacterial isolates, with a complete occurrence rate of 100%. This high incidence of class 1 integrons is associated with the development of resistance to crucial antibiotics, including β-lactams, aminoglycosides, and cephalosporins.
铜绿假单胞菌是一种具有重要临床和流行病学意义的细菌。它是免疫系统受损者机会性感染的主要病原体。众所周知,整合子对革兰氏阴性菌有显著的影响,尤其是对铜绿单胞菌,因为铜绿单胞菌具有对抗菌药物产生抗药性的能力。目的在分离的铜绿假单胞菌中系统鉴定和检测具有抗生素耐药性和生物膜形成能力的整合子基因(intI、intII、intIII)。研究方法从伊拉克巴格达市的阿尔亚穆克教学医院(Al Yarmouk Teaching Hospital)共采集 209 份样本,分离铜绿假单胞菌。通过表型和生化测试对细菌进行鉴定。使用 Vitek2 系统测量抗生素敏感性。生物膜定量采用微滴定法。采用 PCR 方法评估 1、2 和 3 类整合子的存在。结果通过结合形态学和生化检查,在 83 个分离物中鉴定出铜绿假单胞菌,所有分离物均能在西曲肽琼脂的铜绿假单胞菌选择性培养基上生长。结果还显示,一些样本和分离出的铜绿假单胞菌的百分比存在明显差异(p < 0.05)。烧伤和伤口感染铜绿假单胞菌阳性率最高(分别为 25% 和 19%),而烧伤和耳部感染铜绿假单胞菌阳性率最高(分别为 58% 和 50%)。此外,这些分离物还具有形成生物膜的能力,对多种抗生素产生耐药性的比例高达 68.7%。对多种药物耐药和敏感的铜绿微囊藻分离株的耐药率较高(分别为 49.4% 和 34.9%),而可能泛耐药和广泛耐药的分离株的耐药率较低(分别为 2.4% 和 13.3%)。聚合酶链式反应结果显示,整合素 I 的得分率最高(100%),而整合素 2 只在 3 个分离株(10%)中发现,没有在任何铜绿假单胞菌分离株中检测到 intI3 基因。结论总体而言,本次调查的结果表明,整合子和生物膜的发展被认为是导致铜绿假单胞菌产生抗生素耐药性的重要因素。在所有细菌分离物中,1 类整合子的发生率都很高,完全发生率为 100%。1 类整合子的高发生率与对关键抗生素(包括 β-内酰胺类、氨基糖苷类和头孢菌素类)产生耐药性有关。
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引用次数: 0
Phenotypic and Genotypic Criteria for the Screening of Highly Active S-Type Pyocins Pseudomonas aeruginosa Producers 筛选铜绿假单胞菌高活性 S 型拟杆菌素生产者的表型和基因型标准
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-23 DOI: 10.15407/microbiolj86.01.039
O. B. Balko, L.B. Zelena, O. Balko, N.A. Bobyr, V. Voitsekhovsky, L. Avdeeva
Bacteriocins of Pseudomonas aeruginosa, especially S-type pyocins, show high efficiency as analogs of antimicrobial drugs. Various screening methods can be used to identify producers of highly active pyocins, but there are no clear criteria for selecting perspective strains. The aim of this work was to determine criteria that can be used during phenotypic and genotypic screening for the selection of perspective highly active S-type pyocin P. aeruginosa producers. Methods. The objects of investigation were 40 P. aeruginosa strains. Pyocins were obtained from each culture, relative coefficients of activity spectrum and sensitivity were determined for all the strains used. The obtained results of the phenotypic screening were compared with the data of the genotypic screening. Results. The use of the proposed method of activity assessment according to the lysis intensity made it possible to phenotypically assess the expression of pyocin genes. It was established that according to the new criteria, only one strain — P. aeruginosa UCM B-333 — can be included in the group of the most active pyocin producers that inhibit the growth of more than 75% of indicator cultures. The majority of representatives of maximally and highly active producers were characterized by high resistance to the action of other pyocins, which can be considered as an additional criterion for the selection of perspective strains. During genotypic screening, it was established that the quantity of pyocin genes in the genome cannot be interpreted as a clear criterion of the producer’s perspective. However, 50% of representatives of maximally and highly active pyocin producers were characterized by the presence of two pyocin genes, while in 47.7% of moderately active and 54.5% of low active producers, one pyocin gene was detected more often. It was established that with widening the bacteriocin activity spectrum, the detection frequency of pyocin S1 and S5 genes increases, and for pyocin S2 and S3 genes — decreases. Thus, among the producers of maximally and highly active bacteriocins, pyocin S1 and S5 genes were identified with the highest frequency — 42.8% and 78.6%, and pyocin S2 and S3 genes — with the lowest one — 28.6% and 7.1%, respectively. Gene of pyocin S4 with tRNase activity were detected with equally high frequency in all groups of producers. Conclusions. The method of activity assessment by the lysis intensity allows not only to determine the presence of pyocins, but also to phenotypically evaluate the level of their expression, which is an important criterion for the selection of perspective producers. Bacteriocins with a wider activity spectrum are synthesized by P. aeruginosa strains with higher resistance to the action of pyocins from other cultures. The most optimal genotypic criterion for the selection of a highly perspective pyocin producer, detection of genes combination of bacteriocins with different mechanisms of action — with DNase activity (pyocin S1) and the
铜绿假单胞菌的细菌毒素,尤其是 S 型焦毒素,作为抗菌药物的类似物显示出很高的效率。有多种筛选方法可用于鉴别高活性焦环菌素的生产者,但目前还没有明确的标准来选择视角菌株。这项工作的目的是确定在表型和基因型筛选过程中可用于选择高活性 S 型拟杆菌毒素生产者的标准。方法。调查对象为 40 株铜绿假单胞菌。从每种培养物中获得焦蛋白,确定所有菌株的活性谱相对系数和敏感性。将表型筛选结果与基因型筛选数据进行比较。结果。根据裂解强度评估活性的拟议方法使表型评估化脓菌素基因的表达成为可能。结果表明,根据新标准,只有一株菌株--铜绿假单胞菌 UCM B-333--能被列入最活跃的产热毒素菌株组,它能抑制 75% 以上指示培养物的生长。最大活性和高活性生产者的大多数代表都具有对其他焦蛋白作用的高抵抗力,这可被视为选择前景菌株的另一个标准。在基因型筛选过程中发现,基因组中焦蛋白基因的数量并不能作为生产者的明确标准。不过,50%的高活性和高活性焦化霉素生产者的特征是存在两个焦化霉素基因,而在 47.7%的中度活跃生产者和 54.5%的低活跃生产者中,更经常检测到一个焦化霉素基因。研究发现,随着细菌素活性范围的扩大,焦蛋白 S1 和 S5 基因的检测频率会增加,而焦蛋白 S2 和 S3 基因的检测频率会降低。因此,在最大活性和高活性细菌素的生产者中,发现焦环菌素 S1 和 S5 基因的频率最高,分别为 42.8% 和 78.6%,焦环菌素 S2 和 S3 基因的频率最低,分别为 28.6% 和 7.1%。具有 tRNase 活性的焦蛋白 S4 基因在各组生产者中的检测频率相同。结论通过裂解强度评估活性的方法不仅能确定是否存在细菌毒素,还能从表型上评估细菌毒素的表达水平,这是选择生产商的一个重要标准。铜绿假单胞菌菌株合成的细菌毒素具有更广的活性谱,对其他培养物产生的产热毒素具有更强的抵抗力。选择高透视性焦毒素生产者的最佳基因型标准是检测具有不同作用机制的细菌毒素基因组合--具有 DNase 活性(焦毒素 S1)和孔隙形成能力(焦毒素 S5)--。
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引用次数: 0
Роль бактерій як основи пелагічних харчових ланцюгів в ультраоліготрофних північних патагонських озерах: міні-огляд 细菌作为巴塔哥尼亚北部超富氧湖泊浮游食物网基础的作用:小型综述
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-23 DOI: 10.15407/microbiolj86.01.066
Patricio De los Ríos-Escalante
The northern Patagonian lakes are located in the South American Andes between 38—41° of Argentina and Chile. In their original stage, these lakes were described as ultraoligotrophic due the presence of perennial native forest that avoided the nutrients inputs from surrounding basin. The first studies described low phytoplankton abundances, but in recent studies, the presence of mixotrophic ciliates has been reported that may be a basis on trophic webs under the ultraoligotrophic status. They can graze on heterotrophic bacteria and nannoflagellates and can also do photosynthesis. Under the ultraoligotrophic status, the bacteria would have the basis on pelagial food webs because these would be grazed by zooplankton and mixotrophic ciliates. Nevertheless, when the lakes have a transition from oligotrophy to mesotrophy, although the bacterial biomass increases, they would not have an exclusive role because of a complex interaction between phytoplankton and grazer zooplankton.
巴塔哥尼亚北部湖泊位于阿根廷和智利 38-41° 之间的南美洲安第斯山脉。在最初阶段,这些湖泊被描述为超低营养型湖泊,因为湖中有多年生的原生林,可以避免来自周围盆地的营养物质。最初的研究表明浮游植物的丰度较低,但最近的研究发现,这些湖泊中存在混养纤毛虫,它们可能是超低营养状态下营养网的基础。它们可以捕食异养细菌和甲藻,也可以进行光合作用。在超低营养状态下,细菌会在浮游食物网中占有一席之地,因为浮游动物和混养纤毛虫会捕食这些细菌。不过,当湖泊从低营养状态过渡到中营养状态时,虽然细菌的生物量会增加,但由于浮游植物和食草浮游动物之间复杂的相互作用,它们不会独占鳌头。
{"title":"Роль бактерій як основи пелагічних харчових ланцюгів в ультраоліготрофних північних патагонських озерах: міні-огляд","authors":"Patricio De los Ríos-Escalante","doi":"10.15407/microbiolj86.01.066","DOIUrl":"https://doi.org/10.15407/microbiolj86.01.066","url":null,"abstract":"The northern Patagonian lakes are located in the South American Andes between 38—41° of Argentina and Chile. In their original stage, these lakes were described as ultraoligotrophic due the presence of perennial native forest that avoided the nutrients inputs from surrounding basin. The first studies described low phytoplankton abundances, but in recent studies, the presence of mixotrophic ciliates has been reported that may be a basis on trophic webs under the ultraoligotrophic status. They can graze on heterotrophic bacteria and nannoflagellates and can also do photosynthesis. Under the ultraoligotrophic status, the bacteria would have the basis on pelagial food webs because these would be grazed by zooplankton and mixotrophic ciliates. Nevertheless, when the lakes have a transition from oligotrophy to mesotrophy, although the bacterial biomass increases, they would not have an exclusive role because of a complex interaction between phytoplankton and grazer zooplankton.","PeriodicalId":18628,"journal":{"name":"Mikrobiolohichnyi zhurnal","volume":"10 7","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140435676","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Encapsulated Probiotic Microorganisms in Functional Food Products 功能性食品中的封装益生微生物
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-21 DOI: 10.15407/microbiolj85.06.077
S. Starovoitova, K. Kishko, O.M. Demchenko, V.V. Bila
Alterations in the composition of the gut microbiota are associated with a wide range of pathologies, including not only inflammatory diseases of the gastrointestinal tract, but also diabetes, obesity, cancer, and diseases of the cardiovascular and central nervous systems. With an imbalance of the microbiota (dysbiosis), there is increased intestinal permeability and a violation of local or systemic immune responses. One of the possible ways to improve intestinal microbiota is the use of dietary supplements and functional food products enriched with highly effective encapsulated probiotic microorganisms, as well as prebiotic compounds. Such products contribute to the restoration of normal intestinal microflora and its integrity, and also indirectly affect the positive outcome in the treatment of many pathological conditions mediated by an imbalance in the intestinal microbiota. Maintaining the activity of probiotics in food carriers or functional food products designed for the prevention and complex therapy of various pathological conditions is important both for the normalization of the intestinal microflora and the health of the body as a whole. In this context, encapsulation is an effective approach to maintain the viability and stability of probiotics under adverse conditions in the gastrointestinal tract and also an effective way to protect from processing conditions, temperature, and transportation. The development of functional nutrition products enriched with highly effective encapsulated probiotic microorganisms is a priority for new research in the field of prevention and treatment in microbiota-targeted therapy. The use of such products is based on the conception of 3p — pathophysiology-based individualized use of probiotics and prebiotics in various pathological conditions mediated by a violation of the qualitative and/or quantitative composition of the intestinal microbiota: implementing a predictive, preventive, and personalized medical approach.
肠道微生物群组成的改变与多种病症有关,不仅包括胃肠道炎症,还包括糖尿病、肥胖症、癌症以及心血管和中枢神经系统疾病。微生物群失衡(菌群失调)会导致肠道渗透性增加,局部或全身免疫反应紊乱。改善肠道微生物群的可行方法之一是使用富含高效胶囊益生微生物和益生化合物的膳食补充剂和功能性食品。这类产品有助于恢复正常的肠道微生物区系及其完整性,还能间接影响由肠道微生物区系失衡引起的多种病理情况的治疗效果。在用于预防和综合治疗各种病症的食品载体或功能食品中保持益生菌的活性,对于肠道微生物区系的正常化和整个人体的健康都非常重要。在这种情况下,封装是在胃肠道不利条件下保持益生菌活力和稳定性的有效方法,也是保护益生菌不受加工条件、温度和运输影响的有效途径。开发富含高效封装益生微生物的功能性营养产品是微生物群靶向疗法预防和治疗领域新研究的重点。这类产品的使用基于 3p 概念--基于病理生理学的益生菌和益生元的个性化使用,适用于由肠道微生物群的定性和/或定量组成失调引起的各种病理情况:实施预测、预防和个性化医疗方法。
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引用次数: 0
Proteolytic Activity of Bacillus Strains Isolated from Soil of Rice Agrocenosis 从水稻农杆菌病土壤中分离出的芽孢杆菌的蛋白水解活性
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-21 DOI: 10.15407/microbiolj85.06.041
O. Gudzenko, L. Varbanets, K. V. Avdiyuk, L. Pasichnyk
Microorganisms are the most common sources of commercial enzymes due to their physiological and biochemical properties, facile culture conditions, and ease of cell manipulation. Among microbial enzymes, proteases are ubiquitous in nature and have been found in all living forms encompassing the eukaryotes like plants, animals, fungi, and protists as well as the prokaryotic domains of bacteria and archaea. Proteases are the most important for the industry and constitute approximately 60% of the total industrial enzyme market. Among the bacteria, the genus Bacillus has a very prominent place in terms of the commercial production of proteases. Earlier from the water and bottom sediments of the Black Sea, we have isolated a number of producers of proteolytic enzymes from Bacillus species. The aim of this work was to investigate the ability of representatives of a number of soil bacilli species to synthesize enzymes that hydrolyze such protein substrates as elastin, fibrin, fibrinogen, and keratin. Methods. The objects of the study were 8 cultures (KS 1 — KS 8) isolated from the soil of the rice agrocenosis. Cultures were grown under conditions of deep cultivation at 28 °С, with a mixing speed of for the nutrient medium of 230 rpm for 4 days. Methods of determining proteolytic (caseinolytic, elastolytic, fibrinolytic, fibrinogenolytic, and keratinase) activity in the culture liquid supernatant were used. Disulfide reductase activity was measured spectrophotometrically at 412 nm by evaluating the yellow sulfide formed during the reduction of 5,5’-dithiobis-(2-nitrobenzoic acid) (DTNB). Results. The study of the spectrum of proteolytic activities of 8 freshly isolated strains showed that only KS 6 under experimental conditions did not show the ability to hydrolyze any of the studied substrates (casein, elastin, fibrin, fibrinogen, and keratin). Strains KS 1, KS 2, KS 7, and KS 8 showed higher levels of activity compared to other strains studied. The most interesting for further research are: І) strain KS 1, which showed the highest fibrinolytic activity, ІІ) strain KS 2 as the most effective producer with elastase and fibrinogenolytic activity, III) KS 7 and KS 8, which simultaneously showed the highest rates as keratinase (7 U/mL and 9 U/mL) and sulfate reductase (33 μmol/min and 31 μmol/min) activity, respectively. Conclusions. According to the catalytic properties, a number of representatives of Bacillus, isolated from the soil of the rice agrocenosis may be promising for further research as an enzyme producer with proteolytic activity.
由于微生物的生理和生化特性、简便的培养条件和易于细胞操作,它们是商业酶最常见的来源。在微生物酶中,蛋白酶在自然界无处不在,在所有生物形式中都有发现,包括真核生物(如植物、动物、真菌和原生生物)以及原核生物(细菌和古细菌)。蛋白酶对工业最为重要,约占整个工业酶市场的 60%。在细菌中,芽孢杆菌属在蛋白酶的商业化生产方面占有非常突出的地位。早些时候,我们从黑海的海水和海底沉积物中分离出了一些产蛋白水解酶的芽孢杆菌。这项工作的目的是研究一些土壤杆菌物种的代表合成水解弹性蛋白、纤维蛋白、纤维蛋白原和角蛋白等蛋白质底物的酶的能力。研究方法研究对象是从水稻农田土壤中分离出来的 8 个培养物(KS 1 - KS 8)。培养物在 28 °С 深耕条件下生长,营养培养基的搅拌速度为每分钟 230 转,持续 4 天。采用了测定培养液上清中蛋白水解(酪蛋白水解、弹性蛋白水解、纤维蛋白水解、纤维蛋白原水解和角蛋白酶)活性的方法。通过评估 5,5'-二硫双(2-硝基苯甲酸)(DTNB)还原过程中形成的黄色硫化物,在 412 纳米波长下用分光光度法测量二硫还原酶活性。研究结果对 8 株新鲜分离菌株的蛋白水解活性谱进行的研究表明,只有 KS 6 在实验条件下没有表现出水解任何研究底物(酪蛋白、弹性蛋白、纤维蛋白、纤维蛋白原和角蛋白)的能力。与其他研究菌株相比,KS 1、KS 2、KS 7 和 KS 8 菌株表现出更高的活性。最值得进一步研究的菌株是І)菌株 KS 1 显示出最高的纤维蛋白溶解活性;І)菌株 KS 2 是最有效的弹性蛋白酶和纤维蛋白原溶解活性生产者;Ⅲ)菌株 KS 7 和 KS 8 同时显示出最高的角蛋白酶(7 U/mL和 9 U/mL)和硫酸还原酶(33 μmol/min 和 31 μmol/min)活性。结论。根据催化特性,从水稻农田土壤中分离出的一些芽孢杆菌代表可能是具有蛋白水解活性的酶生产者,具有进一步研究的前景。
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引用次数: 0
Molecular Profile of Metallo-β-Lactamase Producing Bacterial Isolates from Clinical Samples; South-South Nigeria Perspective 从临床样本中提取的产金属β-内酰胺酶细菌的分子谱;尼日利亚南部视角
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-21 DOI: 10.15407/microbiolj85.06.015
U.E. Akereuke, I.A. Onwuezobe, A.E. Ekuma, E.N. Edem, N.S. Uko, R.S. Okon, E.O. Bawonda, E.N. Ekpenyong
One of the major clinical problems regarding β-lactam antibiotics resistance is attributed to metallo-beta-lactamases (MβL), which are a group of enzymes that is a subset of beta- lactamases belonging to group B of the Ambler classification, which causes hydrolysis of carbapenems. The study was conducted to check the prevalence of MβL and its genes (IMP, VIM, and NDM) among Gram-negative isolates. Methods. 312 clinical samples (urine and wound) were cultured, and antimicrobial susceptibility testing was performed using the conventional disk diffusion method. MβL-phenotypic detection was uncovered by standard bacteriological techniques, MβL genes were amplified using pre-determined conditions set on an AB19700 Applied Biosystem thermal cycler. Results. 157 (56.1%) Gram-negative and 123 (43.9%) Gram-positive were isolated. Escherichia coli 32 (11.4%) and Pseudomonas aeruginosa 32 (11.4%) were the most predominant. Providencia stuartii 3 (1.1%), Klebsiella ornitholytica 2 (0.7%), and Stenotrophomonas maltophilia 1 (0.4%) were some of the less predominant isolates. Imipenem and Ertapenem were the most sensitive, while Gentamicin, Amoxicillin-Clavulanate, and Ceftriaxone were the most resistant. Twelve species (7.6%) were identified as MβL producers. The VIM gene (12: 100%) was the predominant gene, followed by the NDM gene (6: 50%) and the IMP gene (2: 16.7%). Conclusions. The detection of blaVIM, blaNDM, and blaIMP genes in South-south Uyo is really worrisome, and proper infectious control measures should be taken in order to prevent outbreaks of MβL-producing Gram-negative bacteria isolated in Uyo, South South Nigeria.
金属β-内酰胺酶(MβL)是β-内酰胺酶的一个子集,属于安布勒分类法的 B 组,可导致碳青霉烯类的水解。本研究旨在检测 MβL 及其基因(IMP、VIM 和 NDM)在革兰氏阴性分离物中的流行率。研究方法对 312 份临床样本(尿液和伤口)进行培养,并采用传统的磁盘扩散法进行抗菌药敏感性检测。采用标准细菌学技术进行 MβL 表型检测,在 AB19700 Applied Biosystem 热循环仪上根据预先设定的条件扩增 MβL 基因。结果共分离出 157 株(56.1%)革兰氏阴性菌和 123 株(43.9%)革兰氏阳性菌。大肠杆菌 32 个(11.4%)和铜绿假单胞菌 32 个(11.4%)是最主要的细菌。普罗维登菌(Providencia stuartii)3 株(1.1%)、鸟疫克雷伯菌(Klebsiella ornitholytica)2 株(0.7%)和嗜麦芽血单胞菌(Stenotrophomonas maltophilia)1 株(0.4%)是一些不太主要的分离菌。亚胺培南和厄他培南最敏感,而庆大霉素、阿莫西林-克拉维酸和头孢曲松最耐药。有 12 个物种(7.6%)被鉴定为 MβL 生产者。VIM 基因(12:100%)是主要基因,其次是 NDM 基因(6:50%)和 IMP 基因(2:16.7%)。结论在南南乌约检测到 blaVIM、blaNDM 和 blaIMP 基因确实令人担忧,应采取适当的感染控制措施,以防止在尼日利亚南部乌约分离到的产 MβL 革兰氏阴性菌爆发。
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