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Pathology Asks for Global Regulations in Artificial Intelligence Employment
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-04-10 DOI: 10.1016/j.modpat.2025.100754
Massimo Rugge , Matteo Fraschini , Alessandro D’Amuri , Gavino Faa
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引用次数: 0
Labor-efficient Pathological Auxiliary Diagnostic Model for Primary and Metastatic Tumor Tissue Detection in Pancreatic Ductal Adenocarcinoma.
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-04-06 DOI: 10.1016/j.modpat.2025.100764
Xinyi Ke, Moxuan Yang, Jingci Chen, Ruping Hong, Zheng Wang, Shuhao Wang, Hui Zhang, Junliang Lu, Boju Pan, Yike Gao, Xiaoding Liu, Xiaoyu Li, Yang Zhang, Si Su, Huanwen Wu, Zhiyong Liang

Accurate histopathological evaluation of pancreatic ductal adenocarcinoma (PDAC), including primary tumor lesions and lymph node metastases, is critical for prognostic evaluation and personalized therapeutic strategies. Distinct from other solid tumors, PDAC presents unique diagnostic challenges due to its extensive desmoplasia, unclear tumor boundary, and difficulty in differentiation from chronic pancreatitis. These characteristics not only complicate pathological diagnosis but also hinder the acquisition of pixel-level annotations required for training computational pathology models. Here, we present PANseg, a multi-scale weakly supervised deep learning framework for PDAC segmentation, trained and tested on 368 whole-slide images (WSIs) from 192 patients across two independent centers. Utilizing only image-level labels (2,048×2,048 pixels), PANseg achieved comparable performance to fully supervised baseline (FSB) across the internal test set 1 (17 patients/58 WSIs; PANseg AUROC: 0.969 vs FSB AUROC: 0.968), internal test set 2 (40 patients/44 WSIs; PANseg AUROC: 0.991 vs FSB AUROC: 0.980) and external test set (20 patients/20 WSIs; PANseg AUROC: 0.950 vs FSB AUROC: 0.958). Moreover, the model demonstrated considerable generalizability with previously unseen sample types, attaining AUROCs of 0.878 on fresh-frozen specimens (20 patients/20 WSIs) and 0.821 on biopsy sections (20 patients/20 WSIs). In lymph node metastasis detection, PANseg augmented diagnostic accuracy of six pathologists from 0.888 to 0.961, while reducing average diagnostic time by 32.6% (72.0 vs 48.5 minutes). This study demonstrates that our weakly supervised model can achieve expert-level segmentation performance and substantially reducing annotation burden. The clinical implementation of PANseg holds great potential in enhancing diagnostic precision and workflow efficiency in routine histopathological assessment of PDAC.

{"title":"Labor-efficient Pathological Auxiliary Diagnostic Model for Primary and Metastatic Tumor Tissue Detection in Pancreatic Ductal Adenocarcinoma.","authors":"Xinyi Ke, Moxuan Yang, Jingci Chen, Ruping Hong, Zheng Wang, Shuhao Wang, Hui Zhang, Junliang Lu, Boju Pan, Yike Gao, Xiaoding Liu, Xiaoyu Li, Yang Zhang, Si Su, Huanwen Wu, Zhiyong Liang","doi":"10.1016/j.modpat.2025.100764","DOIUrl":"https://doi.org/10.1016/j.modpat.2025.100764","url":null,"abstract":"<p><p>Accurate histopathological evaluation of pancreatic ductal adenocarcinoma (PDAC), including primary tumor lesions and lymph node metastases, is critical for prognostic evaluation and personalized therapeutic strategies. Distinct from other solid tumors, PDAC presents unique diagnostic challenges due to its extensive desmoplasia, unclear tumor boundary, and difficulty in differentiation from chronic pancreatitis. These characteristics not only complicate pathological diagnosis but also hinder the acquisition of pixel-level annotations required for training computational pathology models. Here, we present PANseg, a multi-scale weakly supervised deep learning framework for PDAC segmentation, trained and tested on 368 whole-slide images (WSIs) from 192 patients across two independent centers. Utilizing only image-level labels (2,048×2,048 pixels), PANseg achieved comparable performance to fully supervised baseline (FSB) across the internal test set 1 (17 patients/58 WSIs; PANseg AUROC: 0.969 vs FSB AUROC: 0.968), internal test set 2 (40 patients/44 WSIs; PANseg AUROC: 0.991 vs FSB AUROC: 0.980) and external test set (20 patients/20 WSIs; PANseg AUROC: 0.950 vs FSB AUROC: 0.958). Moreover, the model demonstrated considerable generalizability with previously unseen sample types, attaining AUROCs of 0.878 on fresh-frozen specimens (20 patients/20 WSIs) and 0.821 on biopsy sections (20 patients/20 WSIs). In lymph node metastasis detection, PANseg augmented diagnostic accuracy of six pathologists from 0.888 to 0.961, while reducing average diagnostic time by 32.6% (72.0 vs 48.5 minutes). This study demonstrates that our weakly supervised model can achieve expert-level segmentation performance and substantially reducing annotation burden. The clinical implementation of PANseg holds great potential in enhancing diagnostic precision and workflow efficiency in routine histopathological assessment of PDAC.</p>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":" ","pages":"100764"},"PeriodicalIF":7.1,"publicationDate":"2025-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143811767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cover
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-04-01 DOI: 10.1016/S0893-3952(25)00056-0
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引用次数: 0
POU4F3 Expression Distinguishes Wnt/Beta-Catenin–Activated Nonpilomatrical Carcinoma From Merkel Cell Carcinoma
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-03-28 DOI: 10.1016/j.modpat.2025.100751
Thibault Kervarrec , Serge Guyétant
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引用次数: 0
Methylation Analysis Reveals Epigenetic Congruence Between Bone Sarcomas With H3-3A Mutations and Malignant Giant Cell Tumors of Bone
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-03-27 DOI: 10.1016/j.modpat.2025.100763
Carla Saoud , Jamal Benhamida , Laetitia Borsu , Liliana Villafania , Konstantinos Linos , A. Rose Brannon , Hwang Sinchun , Carol Morris , Max Vaynrub , Meredith Bartelstein , John Healey , William Tap , Tejus A. Bale , Benjamin A. Nacev , Marc Ladanyi , Meera R. Hameed
Hotspot mutations in H3-3A gene are key drivers in giant cell tumor of bone (GCTB). Rare primary bone sarcomas also harbor this mutation, but their clinicopathologic characteristics and molecular profiles, as well as their relationship to conventional and malignant GCTB (MGCTB) and high-grade conventional osteosarcoma (HGOS), are largely undefined. Herein, we present a series of 10 H3-3A mutated bone sarcomas (BSH3-3A) with a comparative clinicopathologic, mutational, and epigenetic analysis with conventional GCTB, MGCTB, and HGOS. BSH3-3A comprised of 6 high-grade osteosarcomas, 4 undifferentiated pleomorphic sarcoma of bone and occurred in 7 women and 3 men with a mean age of 46 years (28-74 years). The tumors involved femur (n = 4), talus (n = 2), spine (n = 2), pelvis (n = 1), and 1 unknown site. Epiphysis involvement was noted in 2 femoral tumors. In majority of the cases, BSH3-3A showed cellular proliferation of epithelioid and/or spindle cells, hyperchromatic nuclei, and conspicuous pleomorphism with or without osteoid production. One case exhibited both low- and high-grade osteosarcoma components. The mutational profile of BSH3-3A was different than that of conventional HGOS with significantly less frequent TP53 mutations. The genomic index, which reflects the degree of genomic complexity, was also significantly lower in BSH3-3A compared with HGOS, yet higher than GCTB. DNA methylation analysis revealed that most BSH3-3A and MGCTB cases form a distinct cluster, positioned near but separate from GCTB, and clearly separated from HGOS. Differential methylation analysis revealed that BSH3-3A exhibited the highest degree of similarity to MGCTB in comparison to HGOS and GCTB. Survival analysis showed that outcomes for BSH3-3A do not differ significantly from those observed in HGOS or MGCTB. Finally, BSH3-3A tumors, although radiologically and histologically identical to high-grade bone sarcomas lacking H3-3A mutations, display epigenetic features similar to MGCTB and have a significantly less complex genomic profile than HGOS, despite comparable clinical outcomes.
{"title":"Methylation Analysis Reveals Epigenetic Congruence Between Bone Sarcomas With H3-3A Mutations and Malignant Giant Cell Tumors of Bone","authors":"Carla Saoud ,&nbsp;Jamal Benhamida ,&nbsp;Laetitia Borsu ,&nbsp;Liliana Villafania ,&nbsp;Konstantinos Linos ,&nbsp;A. Rose Brannon ,&nbsp;Hwang Sinchun ,&nbsp;Carol Morris ,&nbsp;Max Vaynrub ,&nbsp;Meredith Bartelstein ,&nbsp;John Healey ,&nbsp;William Tap ,&nbsp;Tejus A. Bale ,&nbsp;Benjamin A. Nacev ,&nbsp;Marc Ladanyi ,&nbsp;Meera R. Hameed","doi":"10.1016/j.modpat.2025.100763","DOIUrl":"10.1016/j.modpat.2025.100763","url":null,"abstract":"<div><div>Hotspot mutations in <em>H3-3A</em> gene are key drivers in giant cell tumor of bone (GCTB). Rare primary bone sarcomas also harbor this mutation, but their clinicopathologic characteristics and molecular profiles, as well as their relationship to conventional and malignant GCTB (MGCTB) and high-grade conventional osteosarcoma (HGOS), are largely undefined. Herein, we present a series of 10 <em>H3-3A</em> mutated bone sarcomas (BSH3-3A) with a comparative clinicopathologic, mutational, and epigenetic analysis with conventional GCTB, MGCTB, and HGOS. BSH3-3A comprised of 6 high-grade osteosarcomas, 4 undifferentiated pleomorphic sarcoma of bone and occurred in 7 women and 3 men with a mean age of 46 years (28-74 years). The tumors involved femur (n = 4), talus (n = 2), spine (n = 2), pelvis (n = 1), and 1 unknown site. Epiphysis involvement was noted in 2 femoral tumors. In majority of the cases, BSH3-3A showed cellular proliferation of epithelioid and/or spindle cells, hyperchromatic nuclei, and conspicuous pleomorphism with or without osteoid production. One case exhibited both low- and high-grade osteosarcoma components. The mutational profile of BSH3-3A was different than that of conventional HGOS with significantly less frequent <em>TP53</em> mutations. The genomic index, which reflects the degree of genomic complexity, was also significantly lower in BSH3-3A compared with HGOS, yet higher than GCTB. DNA methylation analysis revealed that most BSH3-3A and MGCTB cases form a distinct cluster, positioned near but separate from GCTB, and clearly separated from HGOS. Differential methylation analysis revealed that BSH3-3A exhibited the highest degree of similarity to MGCTB in comparison to HGOS and GCTB. Survival analysis showed that outcomes for BSH3-3A do not differ significantly from those observed in HGOS or MGCTB. Finally, BSH3-3A tumors, although radiologically and histologically identical to high-grade bone sarcomas lacking <em>H3-3A</em> mutations, display epigenetic features similar to MGCTB and have a significantly less complex genomic profile than HGOS, despite comparable clinical outcomes.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 7","pages":"Article 100763"},"PeriodicalIF":7.1,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143743180","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nosologic Reappraisal of the Recently Proposed Calcified Chondroid Mesenchymal Neoplasm Concept in a Series of 20 Cases
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-03-24 DOI: 10.1016/j.modpat.2025.100762
Shogo Nishino , Taisuke Mori , Hajime Umezu , Kohtaro Eguchi , Toshihide Hirai , Ryouji Yamada , Shinsuke Ohshima , Yasushi Yatabe , Seiichi Yoshimoto , Akira Kawai , Toru Motoi , Akihiko Yoshida
“Calcified chondroid mesenchymal neoplasm (CCMN)” is a recently proposed term for tumors with hypercellular chondroid histology and fusion genes. However, its impact on the present classification framework has not been extensively investigated. In this study, we analyzed 20 tumors with histology that would fit with that reported as “CCMN.” With the combined use of RNA sequencing and fluorescence in situ hybridization, 15 tumors were found to have gene fusions, including FN1::FGFR2 (n = 4), FN1::TEK (n = 1), FN1::MERTK (n = 1), PDGFRA::USP8 (n = 2), FN1 rearrangements with undetermined non-FGFR2 partners (n = 4), and PDGFRA rearrangements with undetermined partners (n = 3). FN1 or PDGFRA rearrangement signals were restricted to epithelioid/polygonal cells, indicating that these were neoplastic elements mixed with abundant reactive cells. The fusion-positive tumors were found in 7 men and 8 women aged 29 to 82 years (median, 57 years), and most involved the temporomandibular joints or digits. Tumors showed a chondroid matrix with grungy calcification and cellular components with epithelioid/polygonal cells and were divided into 2 groups the histology of which corresponded to chondroid tenosynovial giant cell tumor or soft-tissue chondroma. Three fusion-positive tumors harbored calcium pyrophosphate dihydrate crystals. Nuclear atypia was frequent. Gene fusions were not detected in the remaining 5 tumors with abundant crystal/calcium deposition, and some may represent reactive conditions. All 20 tumors followed an indolent clinical course, and 4 patients with temporomandibular joint tumors were successfully followed up without surgery for 9 to 60 months. Using “CCMN” as an entity would entail mixed repercussions in diagnostic practice, and how and whether it should be used in diagnosis requires deliberate discussion. The concept may bring some benefits, but it may arguably cause more confusion because it would substantially restructure the conventional framework by drawing a boundary within the chondroma and conflating the chondroma with chondroid tenosynovial giant cell tumor.
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引用次数: 0
MULTI-REGION GENOMIC ANALYSIS OF HUMAN PANCREATIC MUCINOUS CYSTIC NEOPLASMS.
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-03-21 DOI: 10.1016/j.modpat.2025.100759
Michael J Pflüger, Kohei Fujikura, Alicia M Braxton, Jae W Lee, Doreen M Zucha, Brian A Pedro, Davina Goodman, Jiayun Lu, Liping Jiang, Xiaobing Wang, Jiarun Zhu, Marco Dal Molin, Hao Wang, Lodewijk A A Brosens, Jin He, Satomi Kawamoto, Yuchen Jiao, Laura D Wood

Mucinous cystic neoplasms (MCNs) are precursors to invasive pancreatic cancer. Conflicting clinical management recommendations call for better molecular characterization to improve our understanding of their tumorigenesis and risk assessment. We sampled epithelial tissue from a total of 18 surgically resected MCNs and performed dedicated multi-region analysis of somatic genetic alterations by targeted next-generation sequencing of 25 driver genes. In addition, we performed whole exome sequencing and immunohistochemistry on selected samples to supplement our analyses. In total, 128 samples of epithelial MCN tissue were sequenced and analyzed, including samples from 13 small MCNs with low-grade dysplasia, one small MCN with high-grade dysplasia, and four large MCNs with high-grade dysplasia. Eight of 13 (61.5%) comprehensively sampled small low-grade MCNs lacked somatic driver gene mutations in all tissue blocks. These MCNs were lined by predominantly flat epithelium. In contrast, the majority of MCNs with driver gene mutations were predominantly lined by mucin-rich epithelium. No heterogeneity in KRAS mutations was seen across the sampled regions. Multi-region genetic analysis of four large MCNs with high-grade dysplasia provide insights into neoplastic progression, with shared somatic alterations suggesting that high-grade dysplasia arises from low-grade mucin-rich epithelium. These findings were supported by complementary whole exome sequencing studies in 26 MCN epithelium samples. The neoplastic epithelium in the majority of small MCNs does not harbor somatic mutations in pancreatic driver genes. The genetic findings from multi-region analysis on MCNs contrast previous investigations in other mucin-producing pancreatic cysts, indicating distinct mechanisms in early tumorigenesis. This calls for a more nuanced risk assessment in MCNs, requiring improved pre-operative assessment tools.

{"title":"MULTI-REGION GENOMIC ANALYSIS OF HUMAN PANCREATIC MUCINOUS CYSTIC NEOPLASMS.","authors":"Michael J Pflüger, Kohei Fujikura, Alicia M Braxton, Jae W Lee, Doreen M Zucha, Brian A Pedro, Davina Goodman, Jiayun Lu, Liping Jiang, Xiaobing Wang, Jiarun Zhu, Marco Dal Molin, Hao Wang, Lodewijk A A Brosens, Jin He, Satomi Kawamoto, Yuchen Jiao, Laura D Wood","doi":"10.1016/j.modpat.2025.100759","DOIUrl":"https://doi.org/10.1016/j.modpat.2025.100759","url":null,"abstract":"<p><p>Mucinous cystic neoplasms (MCNs) are precursors to invasive pancreatic cancer. Conflicting clinical management recommendations call for better molecular characterization to improve our understanding of their tumorigenesis and risk assessment. We sampled epithelial tissue from a total of 18 surgically resected MCNs and performed dedicated multi-region analysis of somatic genetic alterations by targeted next-generation sequencing of 25 driver genes. In addition, we performed whole exome sequencing and immunohistochemistry on selected samples to supplement our analyses. In total, 128 samples of epithelial MCN tissue were sequenced and analyzed, including samples from 13 small MCNs with low-grade dysplasia, one small MCN with high-grade dysplasia, and four large MCNs with high-grade dysplasia. Eight of 13 (61.5%) comprehensively sampled small low-grade MCNs lacked somatic driver gene mutations in all tissue blocks. These MCNs were lined by predominantly flat epithelium. In contrast, the majority of MCNs with driver gene mutations were predominantly lined by mucin-rich epithelium. No heterogeneity in KRAS mutations was seen across the sampled regions. Multi-region genetic analysis of four large MCNs with high-grade dysplasia provide insights into neoplastic progression, with shared somatic alterations suggesting that high-grade dysplasia arises from low-grade mucin-rich epithelium. These findings were supported by complementary whole exome sequencing studies in 26 MCN epithelium samples. The neoplastic epithelium in the majority of small MCNs does not harbor somatic mutations in pancreatic driver genes. The genetic findings from multi-region analysis on MCNs contrast previous investigations in other mucin-producing pancreatic cysts, indicating distinct mechanisms in early tumorigenesis. This calls for a more nuanced risk assessment in MCNs, requiring improved pre-operative assessment tools.</p>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":" ","pages":"100759"},"PeriodicalIF":7.1,"publicationDate":"2025-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143692884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lower Degree of Microsatellite Instability in Colorectal Carcinomas From MSH6-Associated Lynch Syndrome Patients
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-03-19 DOI: 10.1016/j.modpat.2025.100757
Noah C. Helderman , Fabian Strobel , Lena Bohaumilitzky , Diantha Terlouw , Anne-Sophie van der Werf - ’t Lam , Tom van Wezel , Hans Morreau , Magnus von Knebel Doeberitz , Maartje Nielsen , Matthias Kloor , Aysel Ahadova
Numerous observational and molecular studies focusing on Lynch syndrome (LS) have revealed significant variation in the phenotype and molecular characteristics among carriers of pathogenic variants in mismatch repair genes (path_MMR). Recently, we demonstrated that colorectal carcinomas in path_MSH6 carriers exhibit fewer insertion/deletion mutations compared with cumulative colorectal cancers (CRCs) from other MMR groups, raising the question of whether MSH6-mutated CRCs might display a relatively lower degree of microsatellite instability (MSI). Mutations at 20 coding microsatellites (cMS) were analyzed in 39 MSH6-, 18 MLH1-, 16 MSH2-, and 22 PMS2-mutated CRCs and 35 sporadic MSI CRCs, and mutation frequencies and mutant allele ratios were compared among the different MMR-deficient groups. Considering factors such as HLA-A∗02:01 type, B2M status, and the anticipated immunogenicity of frameshift peptides derived from cMS mutations, the identified cMS mutation profiles of MSH6-mutated CRCs were further investigated to assess their potential impact on immunotherapeutic strategies. MSH6-mutated CRCs exhibited lower mutation frequencies and mutant allele ratios across most cMS. Variation in cMS mutation patterns was observed both between different tumor regions and between tumor tissue and adjacent adenomatous tissue. The cMS mutations in MSH6-mutated CRCs demonstrated inverse correlations with the predicted immunogenicity of the resulting frameshift peptides, which may suggest a negative selection of cell clones bearing highly immunogenic frameshift peptides. Overall, MSH6-mutated CRCs display a relatively lower degree of MSI and represent a biologically distinct subgroup of LS-associated CRCs. This lower MSI level may implicate an altered immune response compared with other MSI CRCs, which could have theoretical implications for the success of immunotherapy in MSH6-mutated CRCs. Future studies should carefully evaluate this possibility. If confirmed, these results would reinforce the notion of classifying LS as distinct syndromes associated with specific MMR genes.
{"title":"Lower Degree of Microsatellite Instability in Colorectal Carcinomas From MSH6-Associated Lynch Syndrome Patients","authors":"Noah C. Helderman ,&nbsp;Fabian Strobel ,&nbsp;Lena Bohaumilitzky ,&nbsp;Diantha Terlouw ,&nbsp;Anne-Sophie van der Werf - ’t Lam ,&nbsp;Tom van Wezel ,&nbsp;Hans Morreau ,&nbsp;Magnus von Knebel Doeberitz ,&nbsp;Maartje Nielsen ,&nbsp;Matthias Kloor ,&nbsp;Aysel Ahadova","doi":"10.1016/j.modpat.2025.100757","DOIUrl":"10.1016/j.modpat.2025.100757","url":null,"abstract":"<div><div>Numerous observational and molecular studies focusing on Lynch syndrome (LS) have revealed significant variation in the phenotype and molecular characteristics among carriers of pathogenic variants in mismatch repair genes (<em>path_MMR</em>). Recently, we demonstrated that colorectal carcinomas in <em>path_MSH6</em> carriers exhibit fewer insertion/deletion mutations compared with cumulative colorectal cancers (CRCs) from other MMR groups, raising the question of whether <em>MSH6</em>-mutated CRCs might display a relatively lower degree of microsatellite instability (MSI). Mutations at 20 coding microsatellites (cMS) were analyzed in 39 <em>MSH6</em>-, 18 <em>MLH1</em>-, 16 <em>MSH2</em>-, and 22 <em>PMS2</em>-mutated CRCs and 35 sporadic MSI CRCs, and mutation frequencies and mutant allele ratios were compared among the different MMR-deficient groups. Considering factors such as <em>HLA-A</em>∗02:01 type, <em>B2M</em> status, and the anticipated immunogenicity of frameshift peptides derived from cMS mutations, the identified cMS mutation profiles of <em>MSH6</em>-mutated CRCs were further investigated to assess their potential impact on immunotherapeutic strategies. <em>MSH6</em>-mutated CRCs exhibited lower mutation frequencies and mutant allele ratios across most cMS. Variation in cMS mutation patterns was observed both between different tumor regions and between tumor tissue and adjacent adenomatous tissue. The cMS mutations in <em>MSH6</em>-mutated CRCs demonstrated inverse correlations with the predicted immunogenicity of the resulting frameshift peptides, which may suggest a negative selection of cell clones bearing highly immunogenic frameshift peptides. Overall, <em>MSH6</em>-mutated CRCs display a relatively lower degree of MSI and represent a biologically distinct subgroup of LS-associated CRCs. This lower MSI level may implicate an altered immune response compared with other MSI CRCs, which could have theoretical implications for the success of immunotherapy in <em>MSH6</em>-mutated CRCs. Future studies should carefully evaluate this possibility. If confirmed, these results would reinforce the notion of classifying LS as distinct syndromes associated with specific MMR genes.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 7","pages":"Article 100757"},"PeriodicalIF":7.1,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143674392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
RNA In Situ Hybridization Detection of CRTC1/3::MAML2 Fusions and LINC00473 in Mucoepidermoid Carcinomas and Hidradenomas of Breast, Salivary Glands, and Skin
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-03-17 DOI: 10.1016/j.modpat.2025.100756
Cooper D. Rutland , Leandra Kingsley , Aihui Wang , Sabrina Zdravkovic , Ishani Das , Ryan Bremer , Jordan S. Laser , Julia A. Bridge , Justin A. Bishop , Gregor Krings , Yunn-Yi Chen , Gregory R. Bean
Genomic rearrangements involving MAML2 have been reported in mucoepidermoid carcinoma (MEC) arising in various anatomical sites, as well as the benign counterpart of hidradenoma (HA). Depending on the location, MAML2-rearranged neoplasms may share morphologic overlap with additional diagnostic entities, including other salivary gland malignancies and cutaneous mimics. In some cases, detection of a CRTC1::MAML2 or less common CRTC3::MAML2 rearrangement by fluorescence in situ hybridization (ISH) or next-generation sequencing may be necessary to help confirm the diagnosis. However, such testing can be time consuming, relatively expensive, and unavailable in many pathology laboratories. We describe the development and validation of an ISH custom BaseScope assay targeting the recurrent breakpoints of CRTC1::MAML2 and CRTC3::MAML2 rearrangements. Moreover, we investigated the diagnostic utility of LINC00473 RNAscope as a surrogate marker for MAML2 fusion status. LINC00473 is a long noncoding RNA reportedly downstream of the CRTC1::MAML2 oncoprotein. We evaluated 227 patient cases, including 30 salivary gland and 2 breast MEC, 14 cutaneous and 8 breast HA, and 173 cases representing >20 potential histologic entities in the differential diagnosis for the presence of each fusion transcript by BaseScope, and a subset of cases (n = 205) for the detection of LINC00473 by RNAscope. RNA ISH was directly visualized by chromogenic signal, and the MAML2 fusion partner could be positively identified in the majority of cases. Overall, RNA ISH demonstrates high concordance with orthogonal testing, with CRTC1/3::MAML2 BaseScope showing 93% sensitivity and 100% specificity and LINC00473 RNAscope showing 92% sensitivity and 99% specificity. RNA ISH for CRTC1/3::MAML2 rearrangements and LINC00473 represent reasonable timely and cost-effective alternatives to fluorescence ISH and next-generation sequencing. Such markers may provide the means for accurate diagnosis to ensure appropriate therapy of MEC and HA—neoplasms that can arise in multiple anatomical sites and be encountered by a wide range of pathologists.
{"title":"RNA In Situ Hybridization Detection of CRTC1/3::MAML2 Fusions and LINC00473 in Mucoepidermoid Carcinomas and Hidradenomas of Breast, Salivary Glands, and Skin","authors":"Cooper D. Rutland ,&nbsp;Leandra Kingsley ,&nbsp;Aihui Wang ,&nbsp;Sabrina Zdravkovic ,&nbsp;Ishani Das ,&nbsp;Ryan Bremer ,&nbsp;Jordan S. Laser ,&nbsp;Julia A. Bridge ,&nbsp;Justin A. Bishop ,&nbsp;Gregor Krings ,&nbsp;Yunn-Yi Chen ,&nbsp;Gregory R. Bean","doi":"10.1016/j.modpat.2025.100756","DOIUrl":"10.1016/j.modpat.2025.100756","url":null,"abstract":"<div><div>Genomic rearrangements involving <em>MAML2</em> have been reported in mucoepidermoid carcinoma (MEC) arising in various anatomical sites, as well as the benign counterpart of hidradenoma (HA). Depending on the location, <em>MAML2</em>-rearranged neoplasms may share morphologic overlap with additional diagnostic entities, including other salivary gland malignancies and cutaneous mimics. In some cases, detection of a <em>CRTC1::MAML2</em> or less common <em>CRTC3::MAML2</em> rearrangement by fluorescence in situ hybridization (ISH) or next-generation sequencing may be necessary to help confirm the diagnosis. However, such testing can be time consuming, relatively expensive, and unavailable in many pathology laboratories. We describe the development and validation of an ISH custom BaseScope assay targeting the recurrent breakpoints of <em>CRTC1::MAML2</em> and <em>CRTC3::MAML2</em> rearrangements. Moreover, we investigated the diagnostic utility of <em>LINC00473</em> RNAscope as a surrogate marker for <em>MAML2</em> fusion status. <em>LINC00473</em> is a long noncoding RNA reportedly downstream of the <em>CRTC1::MAML2</em> oncoprotein. We evaluated 227 patient cases, including 30 salivary gland and 2 breast MEC, 14 cutaneous and 8 breast HA, and 173 cases representing &gt;20 potential histologic entities in the differential diagnosis for the presence of each fusion transcript by BaseScope, and a subset of cases (n = 205) for the detection of <em>LINC00473</em> by RNAscope. RNA ISH was directly visualized by chromogenic signal, and the <em>MAML2</em> fusion partner could be positively identified in the majority of cases. Overall, RNA ISH demonstrates high concordance with orthogonal testing, with <em>CRTC1/3::MAML2</em> BaseScope showing 93% sensitivity and 100% specificity and <em>LINC00473</em> RNAscope showing 92% sensitivity and 99% specificity. RNA ISH for <em>CRTC1/3::MAML2</em> rearrangements and <em>LINC00473</em> represent reasonable timely and cost-effective alternatives to fluorescence ISH and next-generation sequencing. Such markers may provide the means for accurate diagnosis to ensure appropriate therapy of MEC and HA—neoplasms that can arise in multiple anatomical sites and be encountered by a wide range of pathologists.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 7","pages":"Article 100756"},"PeriodicalIF":7.1,"publicationDate":"2025-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143663952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatial Expression of HER2, NECTIN4, and TROP-2 in Muscle-Invasive Bladder Cancer and Metastases: Implications for Pathological and Clinical Management
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-03-12 DOI: 10.1016/j.modpat.2025.100753
Gabriel Dernbach , Marie-Lisa Eich , Mihnea P. Dragomir , Philipp Anders , Nadia Jurczok , Christian Stief , Philipp Jurmeister , Thorsten Schlomm , Frederick Klauschen , David Horst , Gerald Bastian Schulz , Simon Schallenberg
Muscle-invasive bladder cancer (MIBC) presents significant treatment challenges. Antibody–drug conjugates targeting human epidermal growth factor receptor 2 (HER2), trophoblast cell surface antigen 2 (TROP-2), and nectin cell adhesion molecule 4 (NECTIN4) offer promising therapeutic options. This study examined the spatial expression of HER2, TROP-2, and NECTIN4 in MIBC and metastases, their association with molecular subtypes, and clinical outcomes.
Formalin-fixed, paraffin-embedded tissue samples from 251 patients with MIBC were analyzed using immunohistochemistry and tissue microarray analysis. Expression patterns between the tumor front and tumor center (TC) were compared, and statistical analyses assessed associations with molecular subtypes and clinical parameters. Additionally, 67 matched lymph node metastases and a secondary cohort comprising 16 distant metastases, including 7 matched primary tumors, were examined to explore the expression patterns in advanced tumor stages.
In primary tumors, HER2 was predominantly negative (83%) but showed higher positivity in the TC. TROP-2 exhibited high overall expression (58% score 3+), whereas NECTIN4 displayed significant heterogeneity with stronger expression in the TC. Spatial overexpression of TROP-2 and NECTIN4 at the tumor front relative to the TC was associated with a better disease-free survival. Accurate assessment required 4 biopsies for HER2 and NECTIN4 and 3 for TROP-2. HER2 expression was associated with urothelial-like and genomically unstable molecular subtypes, whereas TROP-2 was widely expressed except in the mesenchymal-like subtype. NECTIN4 showed the absence of staining in basal, Mes-like, and Sc/NEC-like subtypes.
Paired lymph node metastases showed higher expression scores for all 3 markers, whereas distant metastases showed reduced NECTIN4 expression. Additionally, lymph node metastases revealed a considerable heterogeneity for HER2 compared with their matched primary tumors.
The spatial heterogeneity of HER2, TROP-2, and NECTIN4 expression necessitates multiple biopsies, particularly from the TC, for accurate evaluation. These findings underscore the need for personalized treatment strategies in MIBC, considering the increased risk of relapse associated with HER2 and NECTIN4 overexpression in the TC. Implementing a multibiopsy approach is critical to enhancing diagnostic accuracy.
{"title":"Spatial Expression of HER2, NECTIN4, and TROP-2 in Muscle-Invasive Bladder Cancer and Metastases: Implications for Pathological and Clinical Management","authors":"Gabriel Dernbach ,&nbsp;Marie-Lisa Eich ,&nbsp;Mihnea P. Dragomir ,&nbsp;Philipp Anders ,&nbsp;Nadia Jurczok ,&nbsp;Christian Stief ,&nbsp;Philipp Jurmeister ,&nbsp;Thorsten Schlomm ,&nbsp;Frederick Klauschen ,&nbsp;David Horst ,&nbsp;Gerald Bastian Schulz ,&nbsp;Simon Schallenberg","doi":"10.1016/j.modpat.2025.100753","DOIUrl":"10.1016/j.modpat.2025.100753","url":null,"abstract":"<div><div>Muscle-invasive bladder cancer (MIBC) presents significant treatment challenges. Antibody–drug conjugates targeting human epidermal growth factor receptor 2 (HER2), trophoblast cell surface antigen 2 (TROP-2), and nectin cell adhesion molecule 4 (NECTIN4) offer promising therapeutic options. This study examined the spatial expression of HER2, TROP-2, and NECTIN4 in MIBC and metastases, their association with molecular subtypes, and clinical outcomes.</div><div>Formalin-fixed, paraffin-embedded tissue samples from 251 patients with MIBC were analyzed using immunohistochemistry and tissue microarray analysis. Expression patterns between the tumor front and tumor center (TC) were compared, and statistical analyses assessed associations with molecular subtypes and clinical parameters. Additionally, 67 matched lymph node metastases and a secondary cohort comprising 16 distant metastases, including 7 matched primary tumors, were examined to explore the expression patterns in advanced tumor stages.</div><div>In primary tumors, HER2 was predominantly negative (83%) but showed higher positivity in the TC. TROP-2 exhibited high overall expression (58% score 3+), whereas NECTIN4 displayed significant heterogeneity with stronger expression in the TC. Spatial overexpression of TROP-2 and NECTIN4 at the tumor front relative to the TC was associated with a better disease-free survival. Accurate assessment required 4 biopsies for HER2 and NECTIN4 and 3 for TROP-2. HER2 expression was associated with urothelial-like and genomically unstable molecular subtypes, whereas TROP-2 was widely expressed except in the mesenchymal-like subtype. NECTIN4 showed the absence of staining in basal, Mes-like, and Sc/NEC-like subtypes.</div><div>Paired lymph node metastases showed higher expression scores for all 3 markers, whereas distant metastases showed reduced NECTIN4 expression. Additionally, lymph node metastases revealed a considerable heterogeneity for HER2 compared with their matched primary tumors.</div><div>The spatial heterogeneity of HER2, TROP-2, and NECTIN4 expression necessitates multiple biopsies, particularly from the TC, for accurate evaluation. These findings underscore the need for personalized treatment strategies in MIBC, considering the increased risk of relapse associated with HER2 and NECTIN4 overexpression in the TC. Implementing a multibiopsy approach is critical to enhancing diagnostic accuracy.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 7","pages":"Article 100753"},"PeriodicalIF":7.1,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143630500","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Modern Pathology
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