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Digital Profiling of Immune Biomarkers in Breast Cancer: Relation to Anthracycline Benefit 乳腺癌免疫生物标志物的数字化分析:与蒽环类药物疗效的关系
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-23 DOI: 10.1016/j.modpat.2025.100718
Elahe Shenasa , Ye He , Zehui Wang , Dongsheng Tu , Dongxia Gao , Zuzana Kos , Shelby Thornton , Torsten O. Nielsen
Assessment of the tumor-immune microenvironment can be used as a prognostic tool for improved survival and as a predictive biomarker for treatment benefit, particularly from immune-modulating treatments including cytotoxic chemotherapy. Using digital spatial profiling (DSP), we studied the tumor-immune microenvironment of 522 breast cancer cases by quantifying 35 immune biomarkers on tissue microarrays from the MA.5 phase III clinical trial. In this trial, node-positive breast cancer patients were randomized to receive either non-anthracycline chemotherapy (cyclophosphamide, methotrexate, 5’-fluorouracil [CMF]) or anthracycline-containing cytotoxic chemotherapy (CEF). Donor block hematoxylin and eosin (H&E)-stained sections were scored for the level of stromal tumor-infiltrating lymphocytes (sTILs), according to the international guidelines. We hypothesized that patients with higher levels of tumor-immune infiltration, assessed by either DSP or H&E staining, would benefit from CEF (relative to CMF) more than patients with lower immune infiltration. Unsupervised hierarchical clustering of digitally scored biomarkers revealed 2 patient clusters: immune infiltrated versus ignored. Following a prespecified statistical plan crafted to meet REMARK (REporting recommendations for tumor MARKer prognostic studies) guidelines, we found that the DSP-derived Immune Cluster assignment did not predict an improved 10-year relapse-free survival for patients receiving CEF compared with CMF. However, a secondary hypothesis revealed a significant predictive value for H&E sTILs assessed on full-faced sections for CEF benefit over CMF in the entire cohort and the human epidermal growth factor receptor 2-enriched subset. As exploratory analyses, supervised clustering of DSP-scored biomarkers suggested that low levels of T-cell immunoglobulin and mucin domain 3 TIM-3 and high levels of human leukocyte antigen HLA-DR and programmed cell death protein ligand PD-L-1 are associated with sensitivity to CEF. Although novel high-plex techniques provide a detailed insight into the tumor microenvironment, conventional H&E staining remains a powerful tool that can be applied to full-faced sections to assess the value of the immune microenvironment, particularly sTILs, in predicting benefits from immunogenic chemotherapies.
{"title":"Digital Profiling of Immune Biomarkers in Breast Cancer: Relation to Anthracycline Benefit","authors":"Elahe Shenasa ,&nbsp;Ye He ,&nbsp;Zehui Wang ,&nbsp;Dongsheng Tu ,&nbsp;Dongxia Gao ,&nbsp;Zuzana Kos ,&nbsp;Shelby Thornton ,&nbsp;Torsten O. Nielsen","doi":"10.1016/j.modpat.2025.100718","DOIUrl":"10.1016/j.modpat.2025.100718","url":null,"abstract":"<div><div>Assessment of the tumor-immune microenvironment can be used as a prognostic tool for improved survival and as a predictive biomarker for treatment benefit, particularly from immune-modulating treatments including cytotoxic chemotherapy. Using digital spatial profiling (DSP), we studied the tumor-immune microenvironment of 522 breast cancer cases by quantifying 35 immune biomarkers on tissue microarrays from the MA.5 phase III clinical trial. In this trial, node-positive breast cancer patients were randomized to receive either non-anthracycline chemotherapy (cyclophosphamide, methotrexate, 5’-fluorouracil [CMF]) or anthracycline-containing cytotoxic chemotherapy (CEF). Donor block hematoxylin and eosin (H&amp;E)-stained sections were scored for the level of stromal tumor-infiltrating lymphocytes (sTILs), according to the international guidelines. We hypothesized that patients with higher levels of tumor-immune infiltration, assessed by either DSP or H&amp;E staining, would benefit from CEF (relative to CMF) more than patients with lower immune infiltration. Unsupervised hierarchical clustering of digitally scored biomarkers revealed 2 patient clusters: immune infiltrated versus ignored. Following a prespecified statistical plan crafted to meet REMARK (REporting recommendations for tumor MARKer prognostic studies) guidelines, we found that the DSP-derived Immune Cluster assignment did not predict an improved 10-year relapse-free survival for patients receiving CEF compared with CMF. However, a secondary hypothesis revealed a significant predictive value for H&amp;E sTILs assessed on full-faced sections for CEF benefit over CMF in the entire cohort and the human epidermal growth factor receptor 2-enriched subset. As exploratory analyses, supervised clustering of DSP-scored biomarkers suggested that low levels of T-cell immunoglobulin and mucin domain 3 TIM-3 and high levels of human leukocyte antigen HLA-DR and programmed cell death protein ligand PD-L-1 are associated with sensitivity to CEF. Although novel high-plex techniques provide a detailed insight into the tumor microenvironment, conventional H&amp;E staining remains a powerful tool that can be applied to full-faced sections to assess the value of the immune microenvironment, particularly sTILs, in predicting benefits from immunogenic chemotherapies.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 5","pages":"Article 100718"},"PeriodicalIF":7.1,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143040123","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diffuse Cyclin D1 and SPINK1 Expression in Gastric Oxyntic Gland Neoplasms: Promising Diagnostic Markers Identified Using Spatial Transcriptome Analysis
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-23 DOI: 10.1016/j.modpat.2025.100719
Aya Shinozaki-Ushiku , Daizo Koinuma , Atsuhito Nakayama , Junichi Nawa , Mitsuhiro Fujishiro , Tetsuo Ushiku
Oxyntic gland neoplasms typically arise in Helicobacter pylori–naive stomachs and are composed predominantly of chief cells, with a smaller component of parietal cells. Their pathologic diagnosis can be challenging owing to minimal cellular atypia. Especially in biopsy specimens with a limited tumor volume or when pathologists have limited experience in diagnosing this neoplasm, distinguishing them from normal oxyntic glands can be difficult, and no reliable diagnostic markers are currently available. In this study, single-cell spatial transcriptome analysis successfully identified significant upregulation of CCND1 and SPINK1 in all 6 analyzed cases of oxyntic gland neoplasms compared with normal oxyntic glands. Immunohistochemical analysis confirmed this finding in 21 endoscopically resected cases of oxyntic gland neoplasms, demonstrating that cyclin D1 and serine peptidase inhibitor Kazal type 1 (SPINK1) were diffusely expressed in oxyntic gland neoplasms, whereas their expression was scarcely observed in normal oxyntic glands, with a few of them showing weak to moderate staining. Even in biopsy specimens, these 2 markers highlighted the tumor areas and clearly distinguished neoplastic from normal oxyntic glands. Nonneoplastic foveolar epithelia and mucous neck cells also showed positive staining for both cyclin D1 and SPINK1. In addition, a mild increase in cyclin D1 expression and patchy or mosaic expression of SPINK1 were observed in fundic gland polyps, H. pylori–associated gastritis, and pyloric gland adenomas, whereas a diffuse staining pattern was specific to oxyntic gland neoplasms. These observations suggest that cyclin D1 and SPINK1 are reliable markers in differentiating oxyntic gland neoplasms from nonneoplastic oxyntic glands and pyloric gland adenomas. Cyclin D1 is commonly used for immunostaining in many pathology departments, and owing to its higher sensitivity and specificity compared with SPINK1, it is considered the best diagnostic marker.
{"title":"Diffuse Cyclin D1 and SPINK1 Expression in Gastric Oxyntic Gland Neoplasms: Promising Diagnostic Markers Identified Using Spatial Transcriptome Analysis","authors":"Aya Shinozaki-Ushiku ,&nbsp;Daizo Koinuma ,&nbsp;Atsuhito Nakayama ,&nbsp;Junichi Nawa ,&nbsp;Mitsuhiro Fujishiro ,&nbsp;Tetsuo Ushiku","doi":"10.1016/j.modpat.2025.100719","DOIUrl":"10.1016/j.modpat.2025.100719","url":null,"abstract":"<div><div>Oxyntic gland neoplasms typically arise in <em>Helicobacter pylori</em>–naive stomachs and are composed predominantly of chief cells, with a smaller component of parietal cells. Their pathologic diagnosis can be challenging owing to minimal cellular atypia. Especially in biopsy specimens with a limited tumor volume or when pathologists have limited experience in diagnosing this neoplasm, distinguishing them from normal oxyntic glands can be difficult, and no reliable diagnostic markers are currently available. In this study, single-cell spatial transcriptome analysis successfully identified significant upregulation of <em>CCND1</em> and <em>SPINK1</em> in all 6 analyzed cases of oxyntic gland neoplasms compared with normal oxyntic glands. Immunohistochemical analysis confirmed this finding in 21 endoscopically resected cases of oxyntic gland neoplasms, demonstrating that cyclin D1 and serine peptidase inhibitor Kazal type 1 (SPINK1) were diffusely expressed in oxyntic gland neoplasms, whereas their expression was scarcely observed in normal oxyntic glands, with a few of them showing weak to moderate staining. Even in biopsy specimens, these 2 markers highlighted the tumor areas and clearly distinguished neoplastic from normal oxyntic glands. Nonneoplastic foveolar epithelia and mucous neck cells also showed positive staining for both cyclin D1 and SPINK1. In addition, a mild increase in cyclin D1 expression and patchy or mosaic expression of SPINK1 were observed in fundic gland polyps, <em>H. pylori</em>–associated gastritis, and pyloric gland adenomas, whereas a diffuse staining pattern was specific to oxyntic gland neoplasms. These observations suggest that cyclin D1 and SPINK1 are reliable markers in differentiating oxyntic gland neoplasms from nonneoplastic oxyntic glands and pyloric gland adenomas. Cyclin D1 is commonly used for immunostaining in many pathology departments, and owing to its higher sensitivity and specificity compared with SPINK1, it is considered the best diagnostic marker.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 5","pages":"Article 100719"},"PeriodicalIF":7.1,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143040020","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
TP53 Wild-Type, Human Papillomavirus-Independent Anal Growth/(Intra)Epithelial Lesion (ANGEL): A Potential Precursor of Anal Squamous Cell Carcinoma TP53 野生型、HPV 依赖性肛门生长/(内)上皮病变 (ANGEL):肛门鳞状细胞癌的潜在前兆。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-23 DOI: 10.1016/j.modpat.2025.100721
Andre Pinto , Aatur D. Singhi , Lysandra Voltaggio , Kevan Salimian , Jacqueline Birkness-Gartman , Elizabeth A. Montgomery
Human papillomavirus (HPV) underpins ∼90% of squamous cell carcinomas (SCCs) of the anus and perianal region. These tumors usually arise in association with precursor lesions such as anal intraepithelial neoplasia/high-grade squamous intraepithelial lesion, whereas a small subset of HPV-negative cancers may harbor mutations in TP53. Recently, vulvar lesions termed differentiated exophytic vulvar intraepithelial lesion/vulvar acanthosis with altered differentiated have been recognized as HPV-independent, TP53 wild-type precursors for vulvar carcinoma; however, analogous anal lesions have not been described. Cases of diagnostically challenging, TP53 wild-type HPV-negative anal squamous lesions with unusual histologic features including acanthosis and/or verrucous architecture were retrospectively identified. Lesions with koilocytic changes, lack of surface maturation, or significant cytologic atypia were excluded. HPV status was determined by immunohistochemistry for p16 and/or in situ hybridization for low- and high-risk strains, whereas TP53 status was assessed using immunohistochemistry and molecular studies in a subset of cases, with targeted molecular sequencing performed in 3 of these. All lesions (5/5) arose in men, ages ranging from 55 to 78 years (median: 65 years). Verrucous architecture was seen in 2 of 5 cases, 2 of 5 were predominantly acanthotic, and 1 of 5 had both verrucous and acanthotic growth. The lesions were characterized by hyperkeratosis (5/5), hypergranulosis (5/5), and cytoplasmic pallor of upper epithelial layers (2/5). All cases were negative for HPV and had wild-type p53 expression. Three cases with sufficient material for sequencing lacked alterations within the entire coding sequencing of TP53. Invasive SCC was concurrently present in 3 of 5 cases. In summary, verrucous and acanthotic HPV-independent TP53 wild-type squamous proliferation of the anal and perianal region, referred to herein as anal growth/(intra)epithelial lesion (ANGEL), are premalignant lesions that have the potential to become invasive, as most of our cases demonstrated synchronous SCC.
{"title":"TP53 Wild-Type, Human Papillomavirus-Independent Anal Growth/(Intra)Epithelial Lesion (ANGEL): A Potential Precursor of Anal Squamous Cell Carcinoma","authors":"Andre Pinto ,&nbsp;Aatur D. Singhi ,&nbsp;Lysandra Voltaggio ,&nbsp;Kevan Salimian ,&nbsp;Jacqueline Birkness-Gartman ,&nbsp;Elizabeth A. Montgomery","doi":"10.1016/j.modpat.2025.100721","DOIUrl":"10.1016/j.modpat.2025.100721","url":null,"abstract":"<div><div>Human papillomavirus (HPV) underpins ∼90% of squamous cell carcinomas (SCCs) of the anus and perianal region. These tumors usually arise in association with precursor lesions such as anal intraepithelial neoplasia/high-grade squamous intraepithelial lesion, whereas a small subset of HPV-negative cancers may harbor mutations in <em>TP53</em>. Recently, vulvar lesions termed differentiated exophytic vulvar intraepithelial lesion/vulvar acanthosis with altered differentiated have been recognized as HPV-independent, <em>TP53</em> wild-type precursors for vulvar carcinoma; however, analogous anal lesions have not been described. Cases of diagnostically challenging, <em>TP53</em> wild-type HPV-negative anal squamous lesions with unusual histologic features including acanthosis and/or verrucous architecture were retrospectively identified. Lesions with koilocytic changes, lack of surface maturation, or significant cytologic atypia were excluded. HPV status was determined by immunohistochemistry for p16 and/or in situ hybridization for low- and high-risk strains, whereas <em>TP53</em> status was assessed using immunohistochemistry and molecular studies in a subset of cases, with targeted molecular sequencing performed in 3 of these. All lesions (5/5) arose in men, ages ranging from 55 to 78 years (median: 65 years). Verrucous architecture was seen in 2 of 5 cases, 2 of 5 were predominantly acanthotic, and 1 of 5 had both verrucous and acanthotic growth. The lesions were characterized by hyperkeratosis (5/5), hypergranulosis (5/5), and cytoplasmic pallor of upper epithelial layers (2/5). All cases were negative for HPV and had wild-type p53 expression. Three cases with sufficient material for sequencing lacked alterations within the entire coding sequencing of <em>TP53</em>. Invasive SCC was concurrently present in 3 of 5 cases. In summary, verrucous and acanthotic HPV-independent TP53 wild-type squamous proliferation of the anal and perianal region, referred to herein as anal growth/(intra)epithelial lesion (ANGEL), are premalignant lesions that have the potential to become invasive, as most of our cases demonstrated synchronous SCC.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 5","pages":"Article 100721"},"PeriodicalIF":7.1,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143040148","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Frank Invasion in Tall Cell Carcinoma With Reversed Polarity of the Breast: Report of Two Cases 乳腺极性反转的高细胞癌弗兰克浸润2例报告。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-17 DOI: 10.1016/j.modpat.2025.100714
Rachel Han , Fresia Pareja , Dara S. Ross , Anne Grabenstetter , Hannah Y. Wen , Edi Brogi
Tall cell carcinoma with reversed polarity (TCCRP) is a rare neoplasm of the breast composed of columnar tumor cells arranged in solid and solid-papillary nests with evidence of apical nuclear polarity. No frank invasion is evident despite the lack of a myoepithelial cell layer throughout the tumor. TCCRP has a triple-negative or hormone receptor-low immunophenotype. Recurrent IDH2 R172 hotspot mutation coexisting with genetic alterations in the PI3K pathway characterizes this tumor. Here, we report on 2 postmenopausal patients with TCCRP with frank stromal invasion. IDH2 R172 mutations were detected in both tumors by immunohistochemistry. Targeted sequencing of case 2 demonstrated the presence of IDH2 R172T and RTEL1 E839K mutations. Both patients underwent breast conservation surgery, radiation therapy, and adjuvant endocrine therapy with anastrozole and demonstrated no evidence of disease at 65 and 25 months, respectively. This study suggests that TCCRP may give rise to frank invasive carcinoma, the prognostic significance of which is yet unknown.
反极性高细胞癌(tcccrp)是一种罕见的乳腺肿瘤,由柱状肿瘤细胞排列在实性和实性乳头状巢中,具有根尖核极性。尽管整个肿瘤缺乏肌上皮细胞层,但没有明显的侵袭。TCCRP具有三阴性或激素受体低免疫表型。复发性IDH2 R172热点突变与PI3K通路的遗传改变共存是该肿瘤的特征。在这里,我们报告了两例绝经后TCCRPs伴明显间质侵犯的病例。免疫组化在两种肿瘤中均检测到IDH2 R172突变。病例2的靶向测序显示存在IDH2 R172T和RTEL1 E839K突变。两例患者均接受了保乳手术、放疗和阿那曲唑辅助内分泌治疗,分别在65个月和25个月时无疾病迹象。本研究提示极性相反的高细胞癌可发展为侵袭性癌,其预后意义尚不清楚。
{"title":"Frank Invasion in Tall Cell Carcinoma With Reversed Polarity of the Breast: Report of Two Cases","authors":"Rachel Han ,&nbsp;Fresia Pareja ,&nbsp;Dara S. Ross ,&nbsp;Anne Grabenstetter ,&nbsp;Hannah Y. Wen ,&nbsp;Edi Brogi","doi":"10.1016/j.modpat.2025.100714","DOIUrl":"10.1016/j.modpat.2025.100714","url":null,"abstract":"<div><div>Tall cell carcinoma with reversed polarity (TCCRP) is a rare neoplasm of the breast composed of columnar tumor cells arranged in solid and solid-papillary nests with evidence of apical nuclear polarity. No frank invasion is evident despite the lack of a myoepithelial cell layer throughout the tumor. TCCRP has a triple-negative or hormone receptor-low immunophenotype. Recurrent <em>IDH2</em> R172 hotspot mutation coexisting with genetic alterations in the PI3K pathway characterizes this tumor. Here, we report on 2 postmenopausal patients with TCCRP with frank stromal invasion. <em>IDH2</em> R172 mutations were detected in both tumors by immunohistochemistry. Targeted sequencing of case 2 demonstrated the presence of <em>IDH2</em> R172T and <em>RTEL1</em> E839K mutations. Both patients underwent breast conservation surgery, radiation therapy, and adjuvant endocrine therapy with anastrozole and demonstrated no evidence of disease at 65 and 25 months, respectively. This study suggests that TCCRP may give rise to frank invasive carcinoma, the prognostic significance of which is yet unknown.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 5","pages":"Article 100714"},"PeriodicalIF":7.1,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143008508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Physical Color Calibration of Digital Pathology Scanners for Robust Artificial Intelligence–Assisted Cancer Diagnosis 用于鲁棒人工智能辅助癌症诊断的数字病理扫描仪物理颜色校准。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-16 DOI: 10.1016/j.modpat.2025.100715
Xiaoyi Ji , Richard Salmon , Nita Mulliqi , Umair Khan , Yinxi Wang , Anders Blilie , Henrik Olsson , Bodil Ginnerup Pedersen , Karina Dalsgaard Sørensen , Benedicte Parm Ulhøi , Svein R. Kjosavik , Emilius A.M. Janssen , Mattias Rantalainen , Lars Egevad , Pekka Ruusuvuori , Martin Eklund , Kimmo Kartasalo
The potential of artificial intelligence (AI) in digital pathology is limited by technical inconsistencies in the production of whole slide images (WSIs). This causes degraded AI performance and poses a challenge for widespread clinical application, as fine-tuning algorithms for each site is impractical. Changes in the imaging workflow can also compromise diagnostic accuracy and patient safety. Physical color calibration of scanners, relying on a biomaterial-based calibrant slide and a spectrophotometric reference measurement, has been proposed for standardizing WSI appearance, but its impact on AI performance has not been investigated. We evaluated whether physical color calibration can enable robust AI performance. We trained fully supervised and foundation model–based AI systems for detecting and Gleason grading prostate cancer using WSIs of prostate biopsies from the STHLM3 clinical trial (n = 3651) and evaluated their performance in 3 external cohorts (n = 1161) with and without calibration. With physical color calibration, the fully supervised system’s concordance with pathologists’ grading (Cohen linearly weighted κ) improved from 0.439 to 0.619 in the Stavanger University Hospital cohort (n = 860), from 0.354 to 0.738 in the Karolinska University Hospital cohort (n = 229), and from 0.423 to 0.452 in the Aarhus University Hospital cohort (n = 72). The foundation model’s concordance improved as follows: from 0.739 to 0.760 (Karolinska), from 0.424 to 0.459 (Aarhus), and from 0.547 to 0.670 (Stavanger). This study demonstrated that physical color calibration provides a potential solution to the variation introduced by different scanners, making AI-based cancer diagnostics more reliable and applicable in diverse clinical settings.
人工智能(AI)在数字病理学中的潜力受到全幻灯片图像(wsi)生产技术不一致性的限制。这导致人工智能性能下降,并对广泛的临床应用构成挑战,因为每个部位的微调算法是不切实际的。成像工作流程的变化也会影响诊断的准确性和患者的安全。基于基于生物材料的校准载玻片和分光光度参考测量的扫描仪的物理颜色校准已被提出用于标准化WSI外观,但其对AI性能的影响尚未研究。我们评估了物理颜色校准是否能够实现稳健的人工智能性能。我们训练了基于完全监督和基础模型的人工智能系统,使用来自STHLM3临床试验(n=3,651)的前列腺活检的wsi来检测前列腺癌和Gleason分级,并在三个外部队列(n=1,161)中评估了它们在有和没有校准的情况下的表现。通过物理颜色校准,完全监督系统与病理学家分级(Cohen线性加权kappa)的一致性在斯塔万格大学医院队列中(n=860)从0.439提高到0.619,在卡罗林斯卡大学医院队列中(n=229)从0.354提高到0.738,在奥胡斯大学医院队列中(n=72)从0.423提高到0.452。基础模型的一致性从0.739提高到0.760(卡罗林斯卡),从0.424提高到0.459(奥胡斯),从0.547提高到0.670(斯塔万格)。该研究表明,物理颜色校准为不同扫描仪带来的差异提供了一种潜在的解决方案,使基于人工智能的癌症诊断更加可靠,适用于各种临床环境。
{"title":"Physical Color Calibration of Digital Pathology Scanners for Robust Artificial Intelligence–Assisted Cancer Diagnosis","authors":"Xiaoyi Ji ,&nbsp;Richard Salmon ,&nbsp;Nita Mulliqi ,&nbsp;Umair Khan ,&nbsp;Yinxi Wang ,&nbsp;Anders Blilie ,&nbsp;Henrik Olsson ,&nbsp;Bodil Ginnerup Pedersen ,&nbsp;Karina Dalsgaard Sørensen ,&nbsp;Benedicte Parm Ulhøi ,&nbsp;Svein R. Kjosavik ,&nbsp;Emilius A.M. Janssen ,&nbsp;Mattias Rantalainen ,&nbsp;Lars Egevad ,&nbsp;Pekka Ruusuvuori ,&nbsp;Martin Eklund ,&nbsp;Kimmo Kartasalo","doi":"10.1016/j.modpat.2025.100715","DOIUrl":"10.1016/j.modpat.2025.100715","url":null,"abstract":"<div><div>The potential of artificial intelligence (AI) in digital pathology is limited by technical inconsistencies in the production of whole slide images (WSIs). This causes degraded AI performance and poses a challenge for widespread clinical application, as fine-tuning algorithms for each site is impractical. Changes in the imaging workflow can also compromise diagnostic accuracy and patient safety. Physical color calibration of scanners, relying on a biomaterial-based calibrant slide and a spectrophotometric reference measurement, has been proposed for standardizing WSI appearance, but its impact on AI performance has not been investigated. We evaluated whether physical color calibration can enable robust AI performance. We trained fully supervised and foundation model–based AI systems for detecting and Gleason grading prostate cancer using WSIs of prostate biopsies from the STHLM3 clinical trial (n = 3651) and evaluated their performance in 3 external cohorts (n = 1161) with and without calibration. With physical color calibration, the fully supervised system’s concordance with pathologists’ grading (Cohen linearly weighted κ) improved from 0.439 to 0.619 in the Stavanger University Hospital cohort (n = 860), from 0.354 to 0.738 in the Karolinska University Hospital cohort (n = 229), and from 0.423 to 0.452 in the Aarhus University Hospital cohort (n = 72). The foundation model’s concordance improved as follows: from 0.739 to 0.760 (Karolinska), from 0.424 to 0.459 (Aarhus), and from 0.547 to 0.670 (Stavanger). This study demonstrated that physical color calibration provides a potential solution to the variation introduced by different scanners, making AI-based cancer diagnostics more reliable and applicable in diverse clinical settings.</div></div>","PeriodicalId":18706,"journal":{"name":"Modern Pathology","volume":"38 5","pages":"Article 100715"},"PeriodicalIF":7.1,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143008515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Claudin 18.2 Expression in 1404 Digestive Tract Adenocarcinomas Including 1175 Colorectal Carcinomas: Distinct Colorectal Carcinoma Subtypes Are Claudin 18.2 Positive Claudin 18.2在1,404例消化道腺癌(包括1,175例结直肠癌)中的表达:不同的结直肠癌亚型Claudin 18.2阳性。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-16 DOI: 10.1016/j.modpat.2025.100712
Kelsey E. McHugh , Rish K. Pai , Robert C. Grant , Steven Gallinger , Jon Davison , Changqing Ma , Reetesh K. Pai
Claudin 18.2 (CLDN18.2) immunohistochemical (IHC) expression can be used to select patients with gastric/gastroesophageal junction adenocarcinomas for zolbetuximab (IMAB362) therapy, zolbetuximab (IMAB362) being a monoclonal antibody targeting CLDN18.2. The aim of this study was to correlate IHC expression of CLDN18.2 with clinicopathologic and molecular features in a large series of digestive tract cancers. IHC for CLDN18.2 was performed on tissue microarrays from 1404 adenocarcinomas including 155 gastric/gastroesophageal, 74 pancreatic ductal, and 1175 colorectal (576 in the initial test cohort; 599 in the subsequent validation cohort), and correlated with HER2 and mismatch repair (MMR) status. Cases were scored as CLDN18.2 positive or negative, with positivity defined as moderate-to-strong membranous staining in ≥75% of tumor cells. CLDN18.2 expression was correlated with clinicopathologic and molecular features for all colorectal adenocarcinomas. CLDN18.2 was positive in 39% (61/155) of gastric/gastroesophageal adenocarcinomas, 38% (28/74) of pancreatic ductal adenocarcinomas, and 3.4% (40/1175) of colorectal adenocarcinomas (P < .001). For gastric/gastroesophageal and pancreatic ductal adenocarcinoma, there was no correlation between CLDN18.2 expression and either HER2 or MMR status. In contrast, CLDN18.2-positive colorectal adenocarcinomas had distinct clinicopathologic and molecular features. CLDN18.2-positive colorectal adenocarcinomas were more frequently proximally located and were more often MMR deficient and BRAF V600E positive (all with P < .05). Quantitative pathologic analysis using the digital pathology biomarker QuantCRC (Aiforia) demonstrated marked differences in histologic features between CLDN18.2-positive and CLDN18.2-negative colorectal adenocarcinomas, with CLDN18.2-positive tumors having an increased tumor:stroma ratio and %mucin but decreased %immature stroma in both the test and validation cohorts (all with P < .05). In conclusion, CLDN18.2-positive colorectal adenocarcinomas are frequently MMR deficient and BRAF V600E mutated, and demonstrate distinct histologic features. Future studies addressing the efficacy of zolbetuximab therapy in this subset of colorectal cancers are needed.
Claudin 18.2 (CLDN18.2)免疫组化表达可用于选择胃/胃食管交界处腺癌患者进行zolbetuximab (IMAB362)治疗,这是一种靶向CLDN18.2的单克隆抗体。本研究的目的是将CLDN18.2的免疫组织化学表达与一系列消化道癌症的临床病理和分子特征联系起来。在1404例腺癌的组织芯片上对CLDN18.2进行免疫组化(IHC)检测,包括155例胃/胃食管癌,74例胰管癌,1175例结直肠癌(576例为初始试验队列;599),并与HER2和错配修复(MMR)状态相关。病例分为CLDN18.2阳性或阴性,阳性定义为肿瘤细胞中中度至强烈的膜性染色,占肿瘤细胞的75%。CLDN18.2的表达与所有结直肠癌的临床病理和分子特征相关。CLDN18.2在39%(61/155)的胃/胃食管腺癌、38%(28/74)的胰管腺癌和3.4%(40/1175)的结直肠腺癌中呈阳性(p . 571)
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引用次数: 0
Prediction of Response to Anti-HER2 Therapy Using A Multigene Assay 使用多基因分析预测抗her2治疗的反应。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-16 DOI: 10.1016/j.modpat.2025.100713
Nehal Atallah , Shorouk Makhlouf , Xingmin Li , Yuan Zhang , Nigel P. Mongan , Emad Rakha
HER2-positive breast cancer (BC), which constitutes 13% to 15% of cases, shows variable response to anti-HER2 therapies. HER2 positivity, defined as protein overexpression (immunohistochemistry [IHC] score 3+) or equivocal expression (IHC 2+) with evidence of HER2 gene amplification, determines the eligibility for anti-HER2 therapy. The MammaTyper assay (Cerca Biotech GmbH) is an RT-qPCR BC subtyping platform based on the micro RNA expression of ERBB2, ESR1, PGR, and MKI67. This study aimed to evaluate the accuracy of the MammaTyper assay in predicting the response of HER2-positive patients to therapy. A well-characterized HER2-positive BC cohort of 287 cases diagnosed at Nottingham University hospitals between 2006 and 2018 was included. The cohort was divided into 2 groups: a trastuzumab-treated group (n = 159) and a chemotherapy-only treated group (n = 128). Tumor clinicopathologic characteristics were matched between the 2 groups. Cases with discordant HER2 status were validated through staining of surgical excision specimens. ERBB2 micro RNA identified 251/287 (87.5%) cases as HER2-positive, 10.8% (31/287) as HER2 low and 1.7% (5/287) as HER2 negative. According to the MammaTyper assay, ERBB2-positive patients treated with anti-HER2 therapy had significantly prolonged 5-year disease-free survival and distant metastasis-free survival (hazard ratio = 0.56, P = .003 and hazard ratio = 0.62, P = .023, respectively). MammaTyper-defined HER2-enriched subtype showed a better response to anti-HER2 therapy compared with IHC-defined subtypes, with significant differences in both 5-year disease-free survival and BC-specific survival (P = .01 and < .001, respectively). Patients who were ERBB2 negative did not show a survival difference between the group of patients who were treated with trastuzumab and those who were treated with chemotherapy only (P > .05). Validation analysis revealed that 11/36 ERBB2-negative cases were IHC 2+/ISH positive with very low level of gene amplification and 25 cases were false classified as HER2-positive using current protocols. Combining the MammaTyper assay with IHC to assess HER2 status improves the identification of HER2-positive patients with BC who would benefit from anti-HER2 therapy.
her2阳性乳腺癌(BC)占病例的13-15%,对抗her2治疗表现出不同的反应。HER2阳性,定义为蛋白质过表达(免疫组织化学(IHC)评分3+)或模糊表达(IHC 2+),有HER2基因扩增的证据,决定了抗HER2治疗的资格。MammaTyper®检测(Cerca Biotech GmbH)是基于ERBB2、ESR1、PGR和MKI67 mRNA表达的RT-qPCR BC亚型分型平台。本研究旨在评估MammaTyper®检测在预测her2阳性患者对治疗反应方面的准确性。纳入了2006年至2018年期间在诺丁汉大学医院诊断的287例典型的her2阳性BC队列。该队列分为2组:曲妥珠单抗治疗组(n=159)和单纯化疗组(n=128)。两组肿瘤临床病理特征吻合。HER2状态不一致的病例通过手术切除标本染色进行验证。ERBB2 mRNA鉴定251/287例(87.5%)为HER2阳性,10.8%(31/287)为HER2低,1.7%(5/287)为HER2阴性。根据MammaTyper®检测,接受抗her2治疗的erbb2阳性患者的5年疾病(DFS)和无远处转移(DMFS)生存期显著延长(HR=0.56, p=0.003和HR=0.62, p=0.023)。与ihc定义的亚型相比,MammaTyper®定义的her2富集亚型对抗her2治疗的反应更好,在5年DFS和BCSS方面存在显著差异(p=0.01和0.05)。验证分析显示,11/36例erbb2阴性病例为IHC 2+/ISH阳性,基因扩增水平极低,25例根据现行方案被错误地分类为HER2阳性。结合MammaTyper®检测和免疫组化(IHC)来评估HER2状态,可以提高HER2阳性BC患者的识别,这些患者将从抗HER2治疗中获益。
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引用次数: 0
How Do I Diagnose Fibrolamellar Carcinoma? 如何诊断纤维板层癌?
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-13 DOI: 10.1016/j.modpat.2025.100711
Haukur Einarsson, Rondell P. Graham
Fibrolamellar carcinoma (FLC) is a unique primary carcinoma of the liver that is characterized by distinct morphologic findings and a recurrent DNAJB1::PRKACA gene fusion. It typically presents in young individuals without underlying liver dysfunction. FLC is difficult to diagnose when based only on morphology, and misdiagnosis is common. Frequent differential diagnoses include conventional hepatocellular carcinoma and intrahepatic cholangiocarcinoma, both of which can show similar morphologic and immunohistochemical features. If based only on molecular analysis, other differential diagnoses have recently emerged, as the DNAJB1::PRKACA fusion has now been reported in cases of intraductal oncocytic papillary neoplasm and intraductal papillary mucinous neoplasm. In this article, we review our diagnostic approach to FLC, which relies on both morphologic and immunohistochemical features, as well as molecular analysis.
纤维板层癌(FLC)是一种独特的原发性肝癌,其特征是不同的形态学发现和复发性DNAJB1::PRKACA基因融合。它通常出现在年轻人没有潜在的肝功能障碍。仅根据形态学诊断FLC是一种困难的诊断,误诊并不罕见。常见的鉴别诊断包括常规肝细胞癌和肝内胆管癌,两者均表现出相似的形态学和免疫组织化学特征。如果仅仅基于分子分析,其他的鉴别诊断最近也出现了,如DNAJB1::PRKACA融合在导管内嗜瘤细胞乳头状瘤和导管内乳头状粘液瘤的病例中已被报道。在本文中,我们回顾了FLC的诊断方法,它依赖于形态学和免疫组织化学特征,以及分子分析。
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引用次数: 0
Diffuse Large B-Cell Lymphoma/High-Grade B-Cell Lymphoma With MYC and BCL6 Rearrangements: A Study of 60 Cases 弥漫性大b细胞淋巴瘤/高级别b细胞淋巴瘤伴MYC和BCL6重排60例分析
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-11 DOI: 10.1016/j.modpat.2025.100710
Do H. Kim, L. Jeffrey Medeiros, Jie Xu, Guilin Tang, Lianqun Qiu, Sa A. Wang, Chi Y. Ok, Wei Wang, C. Cameron Yin, M. James You, Sofia Garces, Pei Lin, Shaoying Li
Classification of cases of diffuse large B-cell lymphoma (DLBCL)/high-grade B-cell lymphoma (HGBL) with MYC and BCL6 rearrangements, referred to here as BCL6 double-hit lymphoma (DHL), is controversial. We assessed 60 cases of BCL6-DHL and compared this cohort to 224 cases of DHL with MYC and BCL2 rearrangements (BCL2-DHL) and 217 cases of DLBCL not otherwise specified. Compared with the DLBCL cohort, patients with BCL6-DHL had more aggressive clinical features such as frequent extranodal involvement, high-stage disease, a high International Prognostic Index score, and an elevated serum lactate dehydrogenase level (P < .01 for all). Compared with the BCL2-DHL cohort, patients with BCL6-DHL had similarly aggressive clinical features but a lower frequency of germinal center B-cell (GCB) immunophenotype and MYC and BCL2 double expression. Patients with BCL6-DHL showed overall survival (OS) intermediate between patients with DLBCL and BCL2-DHL. Following induction with rituximab, cyclophosphamide, doxorubicin, vincristine, and prednisone (R-CHOP) chemotherapy, patients with BCL6-DHL demonstrated poor OS similar to patients with BCL2-DHL and worse OS than that of patients with DLBCL (P = .024). However, among patients who received rituximab, etoposide phosphate, prednisone, vincristine, cyclophosphamide, and doxorubicin (R-EPOCH), there was no significant difference in OS among the 3 groups (P = .146). Gene expression profiling showed that 60% of BCL6-DHL cases had a double-hit (DH)-like signature compared with 10% of DLBCL-GCB and 93% of BCL2-DHL cases. The DH-like signature in BCL6-DHL cases was associated with a GCB immunophenotype. Based on these data, we suggest that BCL6-DHL cases are clinically more aggressive than DLBCL and patients may benefit from a more aggressive therapy than R-CHOP. The data also suggest that BCL6-DHL, as currently defined, is heterogeneous and that neoplasms with a GCB immunophenotype are more likely to have a DH-like signature and behave more aggressively. Last, we suggest that BCL6-DHL cases deserve to be recognized separately in a lymphoma classification to facilitate further understanding of these neoplasms and for optimal patient management.
弥漫性大b细胞淋巴瘤(DLBCL)/高级别b细胞淋巴瘤(HGBL)合并MYC和BCL6重排,也称为BCL6双击淋巴瘤(DHL),其分类存在争议。我们评估了60例BCL6-DHL,并将该队列与224例伴有MYC和BCL2重排的DHL (BCL2-DHL)和217例未作其他说明的DLBCL进行比较。与DLBCL患者相比,BCL6-DHL患者具有更积极的临床特征,如淋巴结外频繁受累、疾病分期高、IPI评分高、血清乳酸脱氢酶水平升高(p
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引用次数: 0
Germline Pathogenic Variants in Patients with Pancreatic Ductal Adenocarcinoma and Extra-Pancreatic Malignancies: A Nationwide Database Analysis 胰腺导管腺癌和胰腺外恶性肿瘤患者的种系致病变异:一个全国性的数据库分析。
IF 7.1 1区 医学 Q1 PATHOLOGY Pub Date : 2025-01-09 DOI: 10.1016/j.modpat.2025.100709
Valentyna Kryklyva , Michael J. Pflüger , Hicham Ouchene , Hanneke Volleberg-Gorissen , Arjen R. Mensenkamp , Marianne A. Jonker , Carlijn van de Water , Iris D. Nagtegaal , Marjolijn J.L. Ligtenberg , Lodewijk A.A. Brosens
Pancreatic ductal adenocarcinoma (PDAC) is a lethal disease. Approximately 10% of affected individuals have an inherited component. Deleterious germline variants increase the lifetime risk for PDAC and are often associated with an elevated risk for extra-pancreatic malignancies. In this study, we aimed to determine the prevalence and impact of germline pathogenic variants (gPVs) in patients with PDAC and extra-pancreatic malignancies. Using tissue samples and longitudinal data from a nationwide pathology database, we identified patients with PDAC and a set of 7 extra-pancreatic malignancies to investigate the presence of gPVs in 25 cancer susceptibility genes with targeted next-generation sequencing. Of 473 patients with PDAC and at least 1 extra-pancreatic malignancy, 75 (16%) had gPVs. These were predominantly in ATM (n = 22), CDKN2A (n = 14), BRCA2 (n = 10), or CHEK2 (n = 10) genes. The combination of PDAC and ovarian carcinoma carried the highest prevalence of gPVs (4 of 10; 40%), followed by PDAC and melanoma (15 of 53; 28%), and PDAC and gastric cancer (2 of 9; 22%). Patients with PDAC and certain extra-pancreatic malignancies carry a higher burden of gPVs than unselected PDAC cohorts. This is a group that very likely benefits from genetic testing because germline status can have important diagnostic and therapeutic implications for affected individuals and their family members.
胰腺导管腺癌(PDAC)是一种致命的疾病。大约10%的患者有遗传因素。有害的种系变异增加了PDAC的终生风险,并且通常与胰腺外恶性肿瘤的风险升高有关。在这项研究中,我们的目的是确定生殖系致病变异(gPVs)在PDAC和胰腺外恶性肿瘤患者中的患病率和影响。利用组织样本和来自全国病理数据库的纵向数据,我们确定了PDAC患者和一组7个胰腺外恶性肿瘤,通过靶向下一代测序研究gpv在25个癌症易感基因中的存在。在473例至少有一种胰腺外恶性肿瘤的PDAC患者中,75例(16%)有gpv。这些主要发生在ATM (n=22)、CDKN2A (n=14)、BRCA2 (n=10)或CHEK2 (n=10)基因中。PDAC合并卵巢癌患者gPVs患病率最高(4 / 10;40%),其次是PDAC和黑色素瘤(53例中的15例;28%), PDAC和胃癌(2 / 9;22%)。患有某些胰腺外恶性肿瘤的PDAC患者比未选择的PDAC患者携带更高的gpv负担。这是一个很可能从基因检测中受益的群体,因为生殖系状态对受影响的个人及其家庭成员具有重要的诊断和治疗意义。
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Modern Pathology
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