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A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling targeting cellular viability 基于NSDRA框架的纳米安全领域的数据可重用性评估,随后针对细胞活力进行探索性定量结构-活性关系(QSAR)建模。
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-07-01 DOI: 10.1016/j.impact.2023.100475
Irini Furxhi , Egon Willighagen , Chris Evelo , Anna Costa , Davide Gardini , Ammar Ammar

Introduction

The current effort towards the digital transformation across multiple scientific domains requires data that is Findable, Accessible, Interoperable and Reusable (FAIR). In addition to the FAIR data, what is required for the application of computational tools, such as Quantitative Structure Activity Relationships (QSARs), is a sufficient data volume and the ability to merge sources into homogeneous digital assets. In the nanosafety domain there is a lack of FAIR available metadata.

Methodology

To address this challenge, we utilized 34 datasets from the nanosafety domain by exploiting the NanoSafety Data Reusability Assessment (NSDRA) framework, which allowed the annotation and assessment of dataset's reusability. From the framework's application results, eight datasets targeting the same endpoint (i.e. numerical cellular viability) were selected, processed and merged to test several hypothesis including universal versus nanogroup-specific QSAR models (metal oxide and nanotubes), and regression versus classification Machine Learning (ML) algorithms.

Results

Universal regression and classification QSARs reached an 0.86 R2 and 0.92 accuracy, respectively, for the test set. Nanogroup-specific regression models reached 0.88 R2 for nanotubes test set followed by metal oxide (0.78). Nanogroup-specific classification models reached 0.99 accuracy for nanotubes test set, followed by metal oxide (0.91). Feature importance revealed different patterns depending on the dataset with common influential features including core size, exposure conditions and toxicological assay.

Even in the case where the available experimental knowledge was merged, the models still failed to correctly predict the outputs of an unseen dataset, revealing the cumbersome conundrum of scientific reproducibility in realistic applications of QSAR for nanosafety. To harness the full potential of computational tools and ensure their long-term applications, embracing FAIR data practices is imperative in driving the development of responsible QSAR models.

Conclusions

This study reveals that the digitalization of nanosafety knowledge in a reproducible manner has a long way towards its successful pragmatic implementation. The workflow carried out in the study shows a promising approach to increase the FAIRness across all the elements of computational studies, from dataset's annotation, selection, merging to FAIR modeling reporting. This has significant implications for future research as it provides an example of how to utilize and report different tools available in the nanosafety knowledge system, while increasing the transparency of the results. One of the main benefits of this workflow is that it promotes data sharing and reuse, which is essential for advancing scientific knowledge by making data and metadata FAIR compliant. In addition, the increased transparen

引言:当前跨多个科学领域的数字化转型需要可查找、可访问、可互操作和可重复使用的数据(FAIR)。除了FAIR数据外,应用计算工具(如定量结构-活动关系(QSAR))所需的是足够的数据量和将来源合并为同质数字资产的能力。在纳米安全领域,缺乏可用的FAIR元数据。方法:为了应对这一挑战,我们利用纳米安全数据可重用性评估(NSDRA)框架,利用了来自纳米安全领域的34个数据集,该框架允许对数据集的可重用性进行注释和评估。从该框架的应用结果中,选择、处理和合并了八个针对相同终点(即数值细胞活力)的数据集,以测试几个假设,包括通用与纳米组特异性QSAR模型(金属氧化物和纳米管),以及回归与分类机器学习(ML)算法。结果:通用回归和分类QSAR的准确度分别达到0.86R2和0.92。纳米管测试集的纳米组特异性回归模型达到0.88 R2,其次是金属氧化物(0.78)。纳米管测试集和金属氧化物(0.91)的纳米组特异性分类模型达到0.99的准确度。特征重要性揭示了不同的模式,这取决于数据集,具有共同的影响特征,包括核心大小、暴露条件和毒理学分析。即使在现有实验知识被合并的情况下,模型仍然未能正确预测看不见的数据集的输出,这揭示了QSAR在纳米安全的实际应用中科学再现性的繁琐难题。为了充分利用计算工具的潜力并确保其长期应用,采用FAIR数据实践对于推动负责任的QSAR模型的开发至关重要。结论:本研究表明,以可复制的方式实现纳米安全知识的数字化离其成功的务实实施还有很长的路要走。该研究中执行的工作流程显示了一种很有前途的方法,可以在计算研究的所有元素中提高FAIR,从数据集的注释、选择、合并到FAIR建模报告。这对未来的研究具有重要意义,因为它提供了一个如何利用和报告纳米安全知识系统中可用的不同工具的例子,同时提高了结果的透明度。该工作流程的主要好处之一是促进了数据共享和重用,这对于通过使数据和元数据符合FAIR来推进科学知识至关重要。此外,结果的透明度和再现性的提高可以提高计算结果的可信度。
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引用次数: 0
Carbon nanomaterials are a superior soil amendment for sandy soils than biochar based on impacts on lettuce growth, physiology and soil biochemical quality 基于对生菜生长、生理和土壤生化质量的影响,碳纳米材料是一种比生物炭更好的沙质土壤改良剂。
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-07-01 DOI: 10.1016/j.impact.2023.100480
Jaya Nepal , Xiaoping Xin , Gabriel Maltais-Landry , Wiqar Ahmad , Jorge Pereira , Swadeshmukul Santra , Alan L. Wright , Andy Ogram , Peter J. Stofella , Zhenli He

A significant bottleneck of current agricultural systems remains the very low agronomic efficiency of conventional agrochemicals, particularly in sandy soils. Carbon nanomaterials (CNMs) have been proposed to address this inefficiency in sandy soils, which could potentially improve soil fertility and enhance crop growth and physiological processes. However, the effects of different rates of CNMs on crop physiological and soil biochemical quality in sandy soils must be compared to other carbon sources (e.g., biochar) before CNMs can be broadly used. To address this, a 70-day pot experiment was set up, growing lettuce under ten treatments: a negative control with no CNMs, biochar or fertilizer; a fertilizer-only control; three CNMs-only unfertilized treatments (CNMs at 200, 400 and 800 mg kg−1 soil); two biochar treatments with fertilizer (biochar at 0.5% and 1% by soil mass + fertilizer); and three CNMs treatments with fertilizer (CNMs at 200, 400 and 800 mg kg−1 soil + fertilizer). A novel amorphous, water-dispersible, and carboxyl-functionalized CNMs with pH of 5.5, zeta potential of −40.6 mV and primary particle diameter of 30–60 nm was used for this experiment. Compared to the fertilizer-only control, CNMs applied at low to medium levels (200–400 mg kg−1) significantly increased lettuce shoot biomass (20–21%), total chlorophyll (23–27%), and fluorescence and photosynthetic activities (4–10%), which was associated with greater soil nutrient availability (N: 24–58%, K: 68–111%) and higher leaf tissue accumulation (N: 25–27%; K: 66%). Low to medium levels of CNMs also significantly increased soil biochemical properties, such as higher soil microbial biomass carbon (27–29%) and urease enzyme activity (34–44%) relative to fertilizer-only applications. In contrast, biochar (0.5%) increased lettuce biomass relative to fertilizer-only but had no significant effect on soil fertility and biological properties. These results suggest that CNMs at low to medium application rates are a superior carbon-based amendment relative to biochar in sandy soils.

当前农业系统的一个重要瓶颈仍然是传统农用化学品的农艺效率非常低,特别是在沙质土壤中。碳纳米材料(CNMs)已被提议用于解决沙质土壤中的这种低效问题,这可能会提高土壤肥力,促进作物生长和生理过程。然而,在广泛使用CNMs之前,必须将不同速率的CNMs对沙质土壤中作物生理和土壤生化质量的影响与其他碳源(如生物炭)进行比较。为了解决这个问题,建立了一个为期70天的盆栽实验,在十种处理下种植生菜:不含CNMs、生物炭或肥料的阴性对照;仅肥料控制;三个仅CNMs的未施肥处理(CNMs分别为200、400和800 mg kg-1土壤);两次施用化肥的生物炭处理(按土壤质量计0.5%和1%的生物炭+化肥);以及三种施用化肥的CNM处理(200、400和800mg kg-1土壤+肥料的CNM)。本实验使用了一种新型无定形、水分散性和羧基官能化的CNMs,其pH为5.5,ζ电位为-40.6mV,初级粒径为30-60nm。与纯肥料对照相比,施用低至中等水平(200-400 mg kg-1)的CNMs显著增加了莴苣地上部生物量(20-21%)、总叶绿素(23-27%)、荧光和光合活性(4-10%),这与更高的土壤养分有效性(N:24-58%,K:68-111%)和更高的叶组织积累(N:25-27%;K:66%)有关。低至中等水平的CNMs也显著提高了土壤的生化特性,例如与仅施用化肥相比,土壤微生物生物量碳(27-29%)和脲酶活性(34-44%)更高。相比之下,相对于肥料,生物炭(0.5%)仅增加了生菜的生物量,但对土壤肥力和生物特性没有显著影响。这些结果表明,在沙质土壤中,相对于生物炭,低至中等施用率的CNMs是一种优越的碳基改良剂。
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引用次数: 0
Toxicological evaluation of therapeutically active zinc oxide nanoflowers in pre-clinical mouse model 临床前小鼠模型中治疗活性氧化锌纳米花的毒理学评价。
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-07-01 DOI: 10.1016/j.impact.2023.100479
Ayan Kumar Barui , Vishnu Sravan Bollu , Swapnali Londhe , Shruti S. Deshpande , Sourav Das , Susheel Kumar Nethi , Muntadher Mazin Abdulkareem Alabbasi , Madhusudana Kuncha , Jerald Mahesh Kumar , Ramakrishna Sistla , Sunil Misra , Chitta Ranjan Patra

Our earlier reports established that zinc oxide nanoflowers (ZONF) show significant pro-angiogenic properties, where reactive oxygen species, nitric oxide and MAPK-AKT-eNOS cell signaling axis play an essential task. Considering the significance of angiogenesis in healthcare, our research group has recently demonstrated the in vivo therapeutic application of ZONF (10 mg/kg b.w.) for treating peripheral artery disease. Moreover, based on the angio-neural crosstalk between vascular and neuronal systems, we have further demonstrated the neuritogenic and neuroprotective characteristics of pro-angiogenic nanoflowers (10 mg/kg b.w.) for the treatment of cerebral ischemia. However, it is crucial for a therapeutic material to be non-toxic for its practical clinical applications and therefore assessment of its in vivo toxicity and adverse effect is highly important. Herein, for the first time, we investigate a detailed nanotoxicology of therapeutically active ZONF in Swiss albino mice to evaluate their safety profile and comprehend their aspects for future clinical applications. The maximum tolerated dose (MTD) of ZONF was found to be 512.5 mg/kg b.w. which was employed for acute exposure (2 weeks), showing slight toxicity. However, sub-chronic (4 weeks) and long term chronic (8–12 weeks) studies of nanoflowers exhibited their non-toxic nature particularly at lower therapeutic doses (1–10 mg/kg b.w.). Additionally, in depth genotoxicity study revealed that lower therapeutic dose of ZONF (10 mg/kg b.w.) did not exhibit significant toxicity even in genetic level. Overall, the present nanotoxicology of ZONF suggests their high biocompatible nature at therapeutic dose, offering the basis of their future clinical applications in ischemic and other vascular diseases.

我们早期的报告证实,氧化锌纳米花(ZONF)显示出显著的促血管生成特性,其中活性氧、一氧化氮和MAPK-AKT-eNOS细胞信号轴发挥着重要作用。考虑到血管生成在医疗保健中的重要性,我们的研究小组最近证明了ZONF(10 mg/kg b.w.)在体内治疗外周动脉疾病的应用。此外,基于血管和神经元系统之间的血管-神经串扰,我们进一步证明了促血管生成纳米花(10mg/kg b.w.)治疗脑缺血的神经炎和神经保护特性。然而,治疗材料的无毒性对其实际临床应用至关重要,因此评估其体内毒性和不良反应非常重要。在此,我们首次在瑞士白化病小鼠中研究了治疗活性ZONF的详细纳米毒理学,以评估其安全性,并了解其在未来临床应用中的作用。ZONF的最大耐受剂量(MTD)为512.5 mg/kg体重,用于急性暴露(2周),显示轻微毒性。然而,纳米花的亚慢性(4周)和长期慢性(8-12周)研究显示出其无毒性,特别是在较低的治疗剂量(1-10 mg/kg b.w.)下。此外,深入的遗传毒性研究表明,较低的ZONF治疗剂量(10 mg/kg b.w..)即使在遗传水平上也没有表现出显著的毒性。总的来说,目前ZONF的纳米毒理学表明,在治疗剂量下,ZONF具有高度的生物相容性,为其未来在缺血性和其他血管疾病中的临床应用奠定了基础。
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引用次数: 0
Transferability and reproducibility of exposed air-liquid interface co-culture lung models 暴露空气-液体界面共培养肺模型的可转移性和再现性。
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-07-01 DOI: 10.1016/j.impact.2023.100466
Hedwig M. Braakhuis , Eric R. Gremmer , Anne Bannuscher , Barbara Drasler , Sandeep Keshavan , Barbara Rothen-Rutishauser , Barbara Birk , Andreas Verlohner , Robert Landsiedel , Kirsty Meldrum , Shareen H. Doak , Martin J.D. Clift , Johanna Samulin Erdem , Oda A.H. Foss , Shanbeh Zienolddiny-Narui , Tommaso Serchi , Elisa Moschini , Pamina Weber , Sabina Burla , Pramod Kumar , Rob J. Vandebriel

Background

The establishment of reliable and robust in vitro models for hazard assessment, a prerequisite for moving away from animal testing, requires the evaluation of model transferability and reproducibility. Lung models that can be exposed via the air, by means of an air-liquid interface (ALI) are promising in vitro models for evaluating the safety of nanomaterials (NMs) after inhalation exposure. We performed an inter-laboratory comparison study to evaluate the transferability and reproducibility of a lung model consisting of the human bronchial cell line Calu-3 as a monoculture and, to increase the physiologic relevance of the model, also as a co-culture with macrophages (either derived from the THP-1 monocyte cell line or from human blood monocytes). The lung model was exposed to NMs using the VITROCELL® Cloud12 system at physiologically relevant dose levels.

Results

Overall, the results of the 7 participating laboratories are quite similar. After exposing Calu-3 alone and Calu-3 co-cultures with macrophages, no effects of lipopolysaccharide (LPS), quartz (DQ12) or titanium dioxide (TiO2) NM-105 particles on the cell viability and barrier integrity were detected. LPS exposure induced moderate cytokine release in the Calu-3 monoculture, albeit not statistically significant in most labs. In the co-culture models, most laboratories showed that LPS can significantly induce cytokine release (IL-6, IL-8 and TNF-α). The exposure to quartz and TiO2 particles did not induce a statistically significant increase in cytokine release in both cell models probably due to our relatively low deposited doses, which were inspired by in vivo dose levels. The intra- and inter-laboratory comparison study indicated acceptable interlaboratory variation for cell viability/toxicity (WST-1, LDH) and transepithelial electrical resistance, and relatively high inter-laboratory variation for cytokine production.

Conclusion

The transferability and reproducibility of a lung co-culture model and its exposure to aerosolized particles at the ALI were evaluated and recommendations were provided for performing inter-laboratory comparison studies. Although the results are promising, optimizations of the lung model (including more sensitive read-outs) and/or selection of higher deposited doses are needed to enhance its predictive value before it may be taken further towards a possible OECD guideline.

背景:建立可靠和稳健的体外危险评估模型是放弃动物试验的先决条件,需要评估模型的可转移性和再现性。可以通过空气-液体界面(ALI)通过空气暴露的肺部模型是评估吸入暴露后纳米材料(NMs)安全性的有前景的体外模型。我们进行了一项实验室间比较研究,以评估由人类支气管细胞系Calu-3组成的肺模型的可转移性和再现性,该模型作为单一培养物,并且为了增加该模型的生理相关性,也作为与巨噬细胞(来源于THP-1单核细胞系或来源于人类血液单核细胞)的共培养物。使用VITROCELL®Cloud12系统将肺模型暴露于生理相关剂量水平的NMs。结果:总体而言,7个参与实验室的结果非常相似。单独暴露Calu-3和Calu-3与巨噬细胞共培养后,未检测到脂多糖(LPS)、石英(DQ12)或二氧化钛(TiO2)NM-105颗粒对细胞活力和屏障完整性的影响。LPS暴露在Calu-3单一培养中诱导了适度的细胞因子释放,尽管在大多数实验室中没有统计学意义。在共培养模型中,大多数实验室表明LPS可以显著诱导细胞因子(IL-6、IL-8和TNF-α)的释放。暴露于石英和TiO2颗粒并没有在两种细胞模型中诱导细胞因子释放的统计学显著增加,这可能是由于我们的沉积剂量相对较低,这是受体内剂量水平的启发。实验室内和实验室间比较研究表明,细胞活力/毒性(WST-1、LDH)和跨上皮电阻的实验室间变化是可接受的,细胞因子产生的实验室间差异相对较高。结论:评估了肺共培养模型的可转移性和再现性,并为进行实验室间比较研究提供了建议。尽管结果很有希望,但在进一步制定可能的经合组织指南之前,需要优化肺部模型(包括更敏感的读数)和/或选择更高的沉积剂量,以提高其预测价值。
{"title":"Transferability and reproducibility of exposed air-liquid interface co-culture lung models","authors":"Hedwig M. Braakhuis ,&nbsp;Eric R. Gremmer ,&nbsp;Anne Bannuscher ,&nbsp;Barbara Drasler ,&nbsp;Sandeep Keshavan ,&nbsp;Barbara Rothen-Rutishauser ,&nbsp;Barbara Birk ,&nbsp;Andreas Verlohner ,&nbsp;Robert Landsiedel ,&nbsp;Kirsty Meldrum ,&nbsp;Shareen H. Doak ,&nbsp;Martin J.D. Clift ,&nbsp;Johanna Samulin Erdem ,&nbsp;Oda A.H. Foss ,&nbsp;Shanbeh Zienolddiny-Narui ,&nbsp;Tommaso Serchi ,&nbsp;Elisa Moschini ,&nbsp;Pamina Weber ,&nbsp;Sabina Burla ,&nbsp;Pramod Kumar ,&nbsp;Rob J. Vandebriel","doi":"10.1016/j.impact.2023.100466","DOIUrl":"10.1016/j.impact.2023.100466","url":null,"abstract":"<div><h3>Background</h3><p>The establishment of reliable and robust <em>in vitro</em> models for hazard assessment, a prerequisite for moving away from animal testing, requires the evaluation of model transferability and reproducibility. Lung models that can be exposed <em>via</em> the air, by means of an air-liquid interface (ALI) are promising <em>in vitro</em> models for evaluating the safety of nanomaterials (NMs) after inhalation exposure. We performed an inter-laboratory comparison study to evaluate the transferability and reproducibility of a lung model consisting of the human bronchial cell line Calu-3 as a monoculture and, to increase the physiologic relevance of the model, also as a co-culture with macrophages (either derived from the THP-1 monocyte cell line or from human blood monocytes). The lung model was exposed to NMs using the VITROCELL® Cloud12 system at physiologically relevant dose levels.</p></div><div><h3>Results</h3><p>Overall, the results of the 7 participating laboratories are quite similar. After exposing Calu-3 alone and Calu-3 co-cultures with macrophages, no effects of lipopolysaccharide (LPS), quartz (DQ12) or titanium dioxide (TiO<sub>2</sub>) NM-105 particles on the cell viability and barrier integrity were detected. LPS exposure induced moderate cytokine release in the Calu-3 monoculture, albeit not statistically significant in most labs. In the co-culture models, most laboratories showed that LPS can significantly induce cytokine release (IL-6, IL-8 and TNF-α). The exposure to quartz and TiO<sub>2</sub> particles did not induce a statistically significant increase in cytokine release in both cell models probably due to our relatively low deposited doses, which were inspired by <em>in vivo</em> dose levels. The intra- and inter-laboratory comparison study indicated acceptable interlaboratory variation for cell viability/toxicity (WST-1, LDH) and transepithelial electrical resistance, and relatively high inter-laboratory variation for cytokine production.</p></div><div><h3>Conclusion</h3><p>The transferability and reproducibility of a lung co-culture model and its exposure to aerosolized particles at the ALI were evaluated and recommendations were provided for performing inter-laboratory comparison studies. Although the results are promising, optimizations of the lung model (including more sensitive read-outs) and/or selection of higher deposited doses are needed to enhance its predictive value before it may be taken further towards a possible OECD guideline.</p></div>","PeriodicalId":18786,"journal":{"name":"NanoImpact","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10143036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Transcriptional response of Cu-deficient barley (Hordeum vulgare L.) to foliar-applied nano-Cu: Molecular crosstalk between Cu loading into plants and changes in Cu homeostasis genes 缺铜大麦(Hordeum vulgare L.)对叶面施用纳米Cu的转录反应:植物中Cu负载与Cu稳态基因变化之间的分子串扰。
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-07-01 DOI: 10.1016/j.impact.2023.100472
Magdalena Kusiak , Magdalena Sozoniuk , Camille Larue , Renato Grillo , Krzysztof Kowalczyk , Patryk Oleszczuk , Izabela Jośko

For safe and effective nutrient management, the cutting-edge approaches to plant fertilization are continuously developed. The aim of the study was to analyze the transcriptional response of barley suffering from Cu deficiency to foliar application of nanoparticulate Cu (nano-Cu) and its ionic form (CuSO4) at 100 and 1000 mg L−1 for the examination of their supplementing effect. The initial interactions of Cu-compounds with barley leaves were analyzed with spectroscopic (ICP-OES) and microscopic (SEM-EDS) methods. To determine Cu cellular status, the impact of Cu-compounds on the expression of genes involved in regulating Cu homeostasis (PAA1, PAA2, RAN1, COPT5), aquaporins (NIP2.1, PIP1.1, TIP1.1, TIP1.2) and antioxidant defense response (SOD CuZn, SOD Fe, SOD Mn, CAT) after 1 and 7 days of exposure was analyzed. Although Cu accumulation in plant leaves was detected overtime, the Cu content in leaves exposed to nano-Cu for 7 days was 44.5% lower than in CuSO4 at 100 mg L−1. However, nano-Cu aggregates remaining on the leaf surface indicated a potential difference between measured Cu content and the real Cu pool present in the plant. Our study revealed significant changes in the pattern of gene expression overtime depending on Cu-compound type and dose. Despite the initial puzzling patterns of gene expression, after 7 days all Cu transporters showed significant down-regulation under Cu-compounds exposure to prevent Cu excess in plant cells. Conversely, aquaporin gene expression was induced after 7 days, especially by nano-Cu and CuSO4 at 100 mg L−1 due to the stimulatory effect of low Cu doses. Our study revealed that the gradual release of Cu ions from nano-Cu at a lower rate provided a milder molecular response than CuSO4. It might indicate that nano-Cu maintained better metal balance in plants than the conventional compounds, thus may be considered as a long-term supplier of Cu.

为了安全有效地管理养分,不断开发尖端的植物施肥方法。本研究的目的是分析缺铜大麦对叶面施用100和1000mg L-1的纳米颗粒铜及其离子形式(CuSO4)的转录反应,以检验其补充效果。用光谱法(ICP-OES)和显微法(SEM-EDS)分析了Cu化合物与大麦叶片的初始相互作用。为了确定Cu细胞状态,分析了暴露1天和7天后Cu化合物对参与调节Cu稳态的基因(PAA1、PAA2、RAN1、COPT5)、水通道蛋白(NIP2.1、PIP1.1、TIP1.1、TIP1.2)和抗氧化防御反应(SOD CuZn、SOD Fe、SOD Mn、CAT)表达的影响。尽管Cu在植物叶片中的积累是随着时间的推移而检测到的,但暴露于纳米Cu 7天的叶片中的Cu含量比暴露于100 mg L-1的CuSO4中的低44.5%。然而,残留在叶片表面的纳米铜聚集体表明,测得的铜含量与植物中存在的真实铜库之间存在潜在差异。我们的研究揭示了随着Cu化合物类型和剂量的增加,基因表达模式的显著变化。尽管最初的基因表达模式令人困惑,但7天后,在铜化合物暴露下,所有铜转运蛋白都显示出显著的下调,以防止植物细胞中的铜过量。相反,由于低Cu剂量的刺激作用,7天后水通道蛋白基因表达被诱导,特别是通过100 mg L-1的纳米Cu和CuSO4。我们的研究表明,Cu离子以较低的速率从纳米Cu中逐渐释放,提供了比CuSO4更温和的分子响应。这可能表明纳米铜在植物中保持了比传统化合物更好的金属平衡,因此可以被认为是铜的长期供应商。
{"title":"Transcriptional response of Cu-deficient barley (Hordeum vulgare L.) to foliar-applied nano-Cu: Molecular crosstalk between Cu loading into plants and changes in Cu homeostasis genes","authors":"Magdalena Kusiak ,&nbsp;Magdalena Sozoniuk ,&nbsp;Camille Larue ,&nbsp;Renato Grillo ,&nbsp;Krzysztof Kowalczyk ,&nbsp;Patryk Oleszczuk ,&nbsp;Izabela Jośko","doi":"10.1016/j.impact.2023.100472","DOIUrl":"10.1016/j.impact.2023.100472","url":null,"abstract":"<div><p>For safe and effective nutrient management, the cutting-edge approaches to plant fertilization are continuously developed. The aim of the study was to analyze the transcriptional response of barley suffering from Cu deficiency to foliar application of nanoparticulate Cu (nano-Cu) and its ionic form (CuSO<sub>4</sub>) at 100 and 1000 mg L<sup>−1</sup> for the examination of their supplementing effect. The initial interactions of Cu-compounds with barley leaves were analyzed with spectroscopic (ICP-OES) and microscopic (SEM-EDS) methods. To determine Cu cellular status, the impact of Cu-compounds on the expression of genes involved in regulating Cu homeostasis (<em>PAA1</em>, <em>PAA2</em>, <em>RAN1</em>, <em>COPT5</em>), aquaporins (<em>NIP2.1</em>, <em>PIP1.1</em>, <em>TIP1.1</em>, <em>TIP1.2</em>) and antioxidant defense response (<em>SOD Cu<img>Zn</em>, <em>SOD F</em>e, <em>SOD Mn</em>, <em>CAT</em>) after 1 and 7 days of exposure was analyzed. Although Cu accumulation in plant leaves was detected overtime, the Cu content in leaves exposed to nano-Cu for 7 days was 44.5% lower than in CuSO<sub>4</sub> at 100 mg L<sup>−1</sup>. However, nano-Cu aggregates remaining on the leaf surface indicated a potential difference between measured Cu content and the real Cu pool present in the plant. Our study revealed significant changes in the pattern of gene expression overtime depending on Cu-compound type and dose. Despite the initial puzzling patterns of gene expression, after 7 days all Cu transporters showed significant down-regulation under Cu-compounds exposure to prevent Cu excess in plant cells. Conversely, aquaporin gene expression was induced after 7 days, especially by nano-Cu and CuSO<sub>4</sub> at 100 mg L<sup>−1</sup> due to the stimulatory effect of low Cu doses. Our study revealed that the gradual release of Cu ions from nano-Cu at a lower rate provided a milder molecular response than CuSO<sub>4</sub>. It might indicate that nano-Cu maintained better metal balance in plants than the conventional compounds, thus may be considered as a long-term supplier of Cu.</p></div>","PeriodicalId":18786,"journal":{"name":"NanoImpact","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10142781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Cocktail effects of emerging contaminants on zebrafish: Nanoplastics and the pharmaceutical diphenhydramine 新出现的污染物对斑马鱼的鸡尾酒效应:纳米塑料和药物苯海拉明
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-04-01 DOI: 10.1016/j.impact.2023.100456
Angela Barreto , Joana Santos , Vânia Calisto , Luciana S. Rocha , Mónica J.B. Amorim , Vera L. Maria

Nanoplastics (NPLs) became ubiquitous in the environment, from the air we breathe to the food we eat. One of the main concerns about the NPLs risks is their role as carrier of other environmental contaminants, potentially increasing their uptake, bioaccumulation and toxicity to the organisms. Therefore, the main aim of this study was to understand how the presence of polystyrene NPLs (∅ 44 nm) will influence the toxicity (synergism, additivity or antagonism) of the antihistamine diphenhydramine (DPH), towards zebrafish (Danio rerio) embryos, when in dual mixtures. After 96 hours (h) exposure, at the organismal level, NPLs (0.015 or 1.5 mg/L) + DPH (10 mg/L) induced embryo mortality (90%) and malformations (100%) and decreased hatching (80%) and heartbeat rates (60%). After 120 h exposure, NPLs (0.015 or 1.5 mg/L) + DPH (0.01 mg/L) decreased larvae swimming distance (30–40%). At the biochemical level, increased glutathione S-transferases (55–122%) and cholinesterase (182–343%) activities were found after 96 h exposure to NPLs (0.015 or 1.5 mg/L) + DPH (0.01 mg/L). However, catalase (CAT) activity remained similar to the control group in the mixtures, inhibiting the effects detected after the exposure to 1.5 mg/L NPLs alone (increased 230% of CAT activity). In general, the effects of dual combination – NPLs + DPH (even at concentrations as low as 10 μg/L of DPH) – were more harmful than the correspondent individual exposures, showing the synergistic interactions of the dual mixture and answering to the main question of this work. The obtained results, namely the altered toxicity patterns of NPLs + DPH compared with the individual exposures, show the importance of an environmental risk assessment considering NPLs as a co-contaminant due to the potential NPLs role as vector for other contaminants.

纳米塑料在环境中变得无处不在,从我们呼吸的空气到我们吃的食物。NPL风险的主要担忧之一是其作为其他环境污染物载体的作用,可能会增加其吸收、生物累积和对生物体的毒性。因此,本研究的主要目的是了解在双重混合物中,聚苯乙烯NPL(∅44nm)的存在将如何影响抗组胺药苯海拉明(DPH)对斑马鱼胚胎的毒性(协同性、添加性或拮抗性)。暴露96小时后,在生物体水平上,NPL(0.015或1.5 mg/L)+DPH(10 mg/L)导致胚胎死亡率(90%)和畸形(100%),孵化率(80%)和心跳率(60%)降低。暴露120小时后,NPLs(0.015或1.5 mg/L)+DPH(0.01 mg/L)降低了幼虫的游泳距离(30-40%)。在生化水平上,暴露于NPLs(0.015或1.5 mg/L)+DPH(0.01 mg/L)96小时后,谷胱甘肽S-转移酶(55-122%)和胆碱酯酶(182343%)活性增加。然而,混合物中的过氧化氢酶(CAT)活性与对照组相似,抑制了单独暴露于1.5 mg/L NPLs后检测到的影响(CAT活性增加230%)。总的来说,双重组合的影响——NPLs+DPH(即使在低至10μg/L的DPH浓度下)——比相应的单独暴露更有害,表明了双重混合物的协同作用,并回答了这项工作的主要问题。所获得的结果,即与个体暴露相比,NPL+DPH的毒性模式的改变,表明了将NPLs视为共同污染物的环境风险评估的重要性,因为NPLs可能是其他污染物的载体。
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引用次数: 1
Zn-Al layered double hydroxides induce embryo malformations and impair locomotion behavior in Danio rerio Zn-Al层状双氢氧化物诱导斑马鱼胚胎畸形并损害其运动行为
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-04-01 DOI: 10.1016/j.impact.2023.100457
Diana Carneiro , Évila Pinheiro Damasceno , Violeta Ferreira , Ives Charlie-Silva , João Tedim , Frederico Maia , Susana Loureiro , Roberto Martins , Maria D. Pavlaki

Layered double hydroxides (LDHs) are stimuli-responsive anionic nanoclays. The vast possibilities of using LDHs can lead to their existence in the ecosystem, raising a question of potential ecological concern. However, little is known about the effect of these nanomaterials on freshwater organisms. The present study aimed to assess the ecotoxicological effects of Zinc-Aluminium LDH-nitrate (ZnAl LDH-NO3) in zebrafish (Danio rerio) early life stages. The endpoints measured were mortality, malformations and hatching rate after exposure of D. rerio embryos and larvae to ZnAl LDH-NO3 following the OECD 236 guideline. The behavioral, biochemical (markers of oxidative stress and neurotoxicity), and molecular (at DNA level) alterations were also assessed using sub-lethal concentrations. No observable acute effects were detected up to 415.2 mg LDH/L while the 96 h-LC50 was estimated as 559.9 mg/L. Tested LDH caused malformations in D. rerio embryos, such as pericardial edema, incomplete yolk sac absorption and tail deformities (96 h-EC50 = 172.4 mg/L). During the dark periods, the locomotor behavior in zebrafish larvae was affected upon ZnAl LDH-NO3 exposure. However, no significant biochemical and molecular changes were recorded. The present findings suggest that ZnAl LDH-NO3 can be regarded as a non-toxic nanomaterial towards D. rerio (E/LC50 > > 100 mg/L) although impairment of the locomotion behavior on zebrafish embryos can be expected at concentrations below 100 mg/L.

层状双氢氧化物(LDHs)是一种对刺激有响应的阴离子纳米粘土。使用LDH的巨大可能性可能导致它们在生态系统中的存在,这引发了一个潜在的生态问题。然而,人们对这些纳米材料对淡水生物的影响知之甚少。本研究旨在评估锌铝LDH硝酸盐(ZnAl-LDH-NO3)对斑马鱼(Danio rerio)早期生命阶段的生态毒理学影响。根据OECD 236指南,测量的终点是灰尾蛇胚胎和幼虫暴露于ZnAl LDH-NO3后的死亡率、畸形率和孵化率。行为、生化(氧化应激和神经毒性的标志物)和分子(DNA水平)的改变也使用亚致死浓度进行了评估。高达415.2 mg LDH/L时未检测到可观察到的急性影响,而96 h-LC50估计为559.9 mg/L。经测试的LDH会导致斑马鱼胚胎畸形,如心包水肿、卵黄囊吸收不完全和尾部畸形(96 h-EC50=172.4 mg/L)。在黑暗期,暴露于ZnAl-LDH-NO3会影响斑马鱼幼虫的运动行为。然而,没有记录到显著的生化和分子变化。目前的研究结果表明,ZnAl-LDH-NO3可以被认为是一种对斑马鱼无毒的纳米材料(E/LC50>>100mg/L),尽管在低于100mg/L的浓度下可能会损害斑马鱼胚胎的运动行为。
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引用次数: 5
TRAAC framework to improve regulatory acceptance and wider usability of tools and methods for safe innovation and sustainability of manufactured nanomaterials TRAAC框架,旨在提高监管接受度和工具和方法的更广泛可用性,以实现人造纳米材料的安全创新和可持续性
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-04-01 DOI: 10.1016/j.impact.2023.100461
Neeraj Shandilya , Marie-Sophie Barreau , Blanca Suarez-Merino , Andrea Porcari , Daniela Pimponi , Keld Alstrup Jensen , Wouter Fransman , Remy Franken

There has been an increasing use of advanced materials, particularly manufactured nanomaterials, in industrial applications and consumer products in the last two decades. It has instigated concerns about the sustainability, in particular, risks and uncertainties regarding the interactions of the manufactured nanomaterials with humans and the environment. Consequently, significant resources in Europe and beyond have been invested into the development of tools and methods to support risk mitigation and risk management, and thus facilitate the research and innovation process of manufactured nanomaterials. The level of risk analysis is increasing, including assessment of socio-economic impacts, and sustainability aspects, moving from a conventional risk-based approach to a wider safety-and-sustainability-by-design perspective. Despite these efforts on tools and methods development, the level of awareness and use of most of such tools and methods by stakeholders is still limited. Issues of regulatory compliance and acceptance, reliability and trust, user-friendliness and compatibility with the users' needs are some of the factors which have been traditionally known to hinder their widespread use. Therefore, a framework is presented to quantify the readiness of different tools and methods towards their wider regulatory acceptance and downstream use by different stakeholders. The framework diagnoses barriers which hinder regulatory acceptance and wider usability of a tool/method based on their Transparency, Reliability, Accessibility, Applicability and Completeness (TRAAC framework). Each TRAAC pillar consists of criteria which help in evaluating the overall quality of the tools and methods for their (i) compatibility with regulatory frameworks and (ii) usefulness and usability for end-users, through a calculated TRAAC score based on the assessment. Fourteen tools and methods were assessed using the TRAAC framework as proof-of-concept and for user variability testing. The results provide insights into any gaps, opportunities, and challenges in the context of each of the 5 pillars of the TRAAC framework. The framework could be, in principle, adapted and extended to the evaluation of other type of tools & methods, even beyond the case of nanomaterials.

在过去二十年中,先进材料,特别是人造纳米材料在工业应用和消费品中的使用越来越多。它引发了人们对可持续性的担忧,特别是人造纳米材料与人类和环境相互作用的风险和不确定性。因此,欧洲及其他地区的大量资源被投资于开发工具和方法,以支持风险缓解和风险管理,从而促进人造纳米材料的研究和创新过程。风险分析的水平正在提高,包括对社会经济影响和可持续性方面的评估,从传统的基于风险的方法转向更广泛的设计安全和可持续性。尽管在工具和方法开发方面做出了这些努力,但利益攸关方对大多数此类工具和方法的认识和使用水平仍然有限。法规遵从性和可接受性、可靠性和信任性、用户友好性以及与用户需求的兼容性等问题是传统上阻碍其广泛使用的一些因素。因此,提出了一个框架,以量化不同工具和方法在更广泛的监管接受和不同利益相关者下游使用方面的准备情况。该框架根据工具/方法的透明度、可靠性、可访问性、适用性和完整性(TRAAC框架),对阻碍监管接受和更广泛可用性的障碍进行诊断。每个TRAAC支柱都包含一些标准,这些标准有助于评估工具和方法的整体质量,以(i)与监管框架的兼容性,以及(ii)通过基于评估计算的TRAAC分数,对最终用户的有用性和可用性。使用TRAAC框架对14种工具和方法进行了评估,作为概念验证和用户可变性测试。研究结果为TRAAC框架的5个支柱中的每一个提供了对任何差距、机遇和挑战的见解。原则上,该框架可以进行调整和扩展,以评估其他类型的工具&;方法,甚至超越了纳米材料的情况。
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引用次数: 3
Sustained oral intake of nano-iron oxide perturbs the gut-liver axis 持续口服纳米氧化铁扰乱肠肝轴
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-04-01 DOI: 10.1016/j.impact.2023.100464
Jiangxue Li , Liuxiang Wang , Shilin Li , Xiaoyu Liang , Yiming Zhang , Yaling Wang , Ying Liu

Nanomaterial have shown excellent properties in the food industry. Although iron oxides are often considered safe and widely used as food additives, the toxicity of nano‑iron oxide remains unclear. Here we established a subchronic exposure mouse model by gavage, tested the biodistribution of nano‑iron oxide, and explored the mechanism of liver injury caused by it through disturbance of the gut-liver axis. Oral intake of nano‑iron oxide will likely disrupt the small intestinal epithelial barrier, induce hepatic lipid metabolism disorders through the gut–liver axis, and cause hepatic damage accompanied with hepatic iron deposition. Nano‑iron oxide mainly caused hepatic lipid metabolism disorder by perturbing glycerophospholipid metabolism and the sphingolipid metabolism pathways, with the total abundance of phosphatidylcholine (PC) and phosphatidylethanolamine (PE) tending to decrease while that of triglyceride tended to increase, in a time- and dose-dependent manner. The imbalanced lipid homeostasis could cause damage via membrane disruption, lipid accumulation, and lipotoxicity. This data provides information about the subchronic toxicity of nano‑iron oxide, highlights the importance of gut-liver axis in the hepatotoxicity.

纳米材料在食品工业中显示出优异的性能。尽管氧化铁通常被认为是安全的,并被广泛用作食品添加剂,但纳米氧化铁的毒性仍不清楚。在这里,我们通过灌胃建立了亚慢性暴露小鼠模型,测试了纳米氧化铁的生物分布,并通过肠肝轴紊乱探讨了其引起肝损伤的机制。口服纳米氧化铁可能会破坏小肠上皮屏障,通过肠肝轴诱导肝脏脂质代谢紊乱,并导致肝脏损伤并伴有肝脏铁沉积。纳米氧化铁主要通过干扰甘油磷脂代谢和鞘脂代谢途径引起肝脏脂质代谢紊乱,磷脂酰胆碱(PC)和磷脂酰乙醇胺(PE)的总丰度呈下降趋势,甘油三酯的总丰度则呈增加趋势,呈时间和剂量依赖性。不平衡的脂质稳态可能通过膜破坏、脂质积聚和脂毒性引起损伤。该数据提供了有关纳米氧化铁亚慢性毒性的信息,强调了肠肝轴在肝毒性中的重要性。
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引用次数: 1
Effects of different sizes of polystyrene micro(nano)plastics on soil microbial communities 不同尺寸聚苯乙烯微(纳米)塑料对土壤微生物群落的影响
IF 4.9 3区 环境科学与生态学 Q1 Social Sciences Pub Date : 2023-04-01 DOI: 10.1016/j.impact.2023.100460
Kwanyoung Ko , Haegeun Chung , Woong Kim , Min-Ji Kim

Micro(nano)plastic (MNP) pollution in soil environments is a major concern, but the effects of different sizes of MNPs on soil microbial communities, which are crucial in nutrient cycling, has not been well investigated. In this study, we aimed to determine the effects of polystyrene (PS) MNPs of different sizes (0.05-, 0.5-, and 5-μm) on soil microbial activity and community composition. Changes in inorganic N concentration, microbial biomass, and extracellular enzyme activities were determined in soils treated with 100 and 1000 μg PS MNPs g−1 soil during a 40-d incubation experiment. Soil microbial biomass was significantly lowered when soils were treated with 0.5- or 5-μm MNPs at 100 and 1000 μg PS MNPs g−1 soil. NH4+ concentration was higher in soils treated with 5-μm MNPs at 100 and 1000 μg g−1 soil than in the control soils at day 1, suggesting that MNPs inhibited the soil nitrification in short term. In contrast, extracellular enzyme activity was not altered by MNPs. The composition of microbial communities analyzed by Illumina MiSeq sequencing changed; particularly, the relative abundance of several bacteria related to N cycling, such as the genus Rhizomicrobium belonging to Alphaproteobacteria was decreased by 0.5- and 5-μm MNPs. Our study shows that the size of MNPs is an important factor that can determine their effects on soil microbial communities. Therefore, the size effects need to be considered in assessing the environmental impacts of MNPs.

土壤环境中的微(纳米)塑料(MNP)污染是一个主要问题,但不同大小的MNP对土壤微生物群落的影响尚未得到很好的研究,而土壤微生物群落在养分循环中至关重要。在本研究中,我们旨在确定不同尺寸(0.05-、0.5-和5-μm)的聚苯乙烯(PS)MNPs对土壤微生物活性和群落组成的影响。在40天的培养实验中,测定了用100和1000μg PS MNPs g−1土壤处理的土壤中无机氮浓度、微生物生物量和胞外酶活性的变化。在100和1000μg PS MNPs g−1土壤中,用0.5或5μm MNPs处理土壤时,土壤微生物生物量显著降低。在100和1000μg g−1土壤中,5μm MNPs处理的土壤在第1天的NH4+浓度高于对照土壤,表明MNPs在短期内抑制了土壤硝化作用。相反,MNPs没有改变细胞外酶的活性。Illumina MiSeq测序分析的微生物群落组成发生了变化;特别是,与氮循环有关的几种细菌的相对丰度降低了0.5和5μm MNPs,例如属于α蛋白菌的根微菌属。我们的研究表明,MNPs的大小是决定其对土壤微生物群落影响的重要因素。因此,在评估MNP的环境影响时,需要考虑规模效应。
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引用次数: 0
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