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A stereoselective reductive cross-coupling reaction with kinetic control 具有动力学控制的立体选择性还原交叉偶联反应
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-11-07 DOI: 10.1038/s41929-025-01440-4
Zhenpeng Shen, Hongjin Shi, Yangyang Li, Xiangyu Zhang, Xiaotian Qi, Guoyin Yin
Substituted cyclohexanes are ubiquitous motifs in bioactive molecules. Thermodynamically disfavoured substituted cyclohexane scaffolds can significantly enhance both the biological activity and pharmacokinetic properties of potential drugs. However, achieving stereoselective cross-coupling for the synthesis of these structures with precise kinetic control remains a challenge. Here we present a modular reductive cross-coupling reaction that enables the stereoselective synthesis of thermodynamically disfavoured substituted cyclohexanes, employing simple alkenes as coupling partners. Mechanistically, the exceptional stereochemistry of this reaction is governed by a Heck-type migratory insertion step. The utility of this method is also demonstrated through the concise synthesis of bioactive molecules. Thermodynamically disfavoured substituted cyclohexane compounds often display superior physical and bioactive properties to their isomeric counterparts. Now their synthesis is achieved by Ni-catalysed coupling of substituted methylenecyclohexanes with electrophiles under kinetic control.
取代环己烷是生物活性分子中普遍存在的基序。热力学上不利的取代环己烷支架可以显著提高潜在药物的生物活性和药代动力学性质。然而,实现立体选择性交叉耦合合成这些结构与精确的动力学控制仍然是一个挑战。在这里,我们提出了一个模块化的还原交叉偶联反应,使立体选择性合成热力学上不利的取代环己烷,采用简单的烯烃作为偶联伙伴。从机理上讲,这种特殊的立体化学反应是由赫克型迁移插入步骤控制的。该方法的实用性也通过生物活性分子的简明合成得到了证明。热力学上不利的取代环己烷化合物通常表现出优于其同分异构体的物理和生物活性。目前它们的合成是在动力学控制下由镍催化取代亚环己烷与亲电试剂偶联而成。
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引用次数: 0
Autonomous catalysis research with human–AI–robot collaboration 人-人工智能-机器人协同自主催化研究
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-11-05 DOI: 10.1038/s41929-025-01430-6
Negin Orouji, Jeffrey A. Bennett, Richard B. Canty, Long Qi, Shijing Sun, Paulami Majumdar, Chong Liu, Núria López, Neil M. Schweitzer, John R. Kitchin, Hongliang Xin, Milad Abolhasani
Catalysis is essential to modern chemical manufacturing and environmental sustainability. Yet, traditional catalyst discovery remains slow, resource-intensive and constrained by human-centred trial-and-error workflows. The integration of artificial intelligence (AI), robotics and high-throughput experimentation into self-driving laboratories (SDLs) presents a transformative approach for accelerating catalyst discovery and optimization. SDLs combine automated synthesis and testing platforms, data infrastructures and AI-guided decision-making to enable information-rich experimentation and the fast-tracked generation of scientific knowledge. However, in our view, realizing the full potential of SDLs requires sustained human oversight to ensure rigorous data curation, validate machine-generated hypotheses and establish benchmarks to mitigate AI-related errors. This Perspective outlines core SDL components, including hardware, computational modelling and AI-guided decision-making. We discuss challenges in data availability, integration of computational and experimental workflows and scalable platforms. Finally, we outline immediate opportunities to broaden the adoption of autonomous experimentation in catalysis. The rise of artificial intelligence together with advances in robotics is leading a surge of interest in self-driving laboratories. This Perspective discusses self-driving laboratories for catalysis while arguing that, to achieve their full potential, human oversight is required.
催化对现代化工生产和环境可持续性至关重要。然而,传统的催化剂发现仍然缓慢,资源密集,并且受到以人为中心的试错工作流程的限制。将人工智能(AI)、机器人技术和高通量实验整合到自动驾驶实验室(sdl)中,为加速催化剂的发现和优化提供了一种变革性的方法。sdl结合了自动化合成和测试平台、数据基础设施和人工智能指导的决策,以实现信息丰富的实验和快速生成科学知识。然而,在我们看来,实现sdl的全部潜力需要持续的人类监督,以确保严格的数据管理,验证机器生成的假设,并建立基准以减轻与人工智能相关的错误。本展望概述了SDL的核心组件,包括硬件、计算建模和人工智能指导的决策。我们讨论了数据可用性、计算和实验工作流程的集成以及可扩展平台方面的挑战。最后,我们概述了扩大催化自主实验采用的直接机会。人工智能的兴起以及机器人技术的进步,导致人们对自动驾驶实验室的兴趣激增。本文讨论了用于催化的自动驾驶实验室,同时认为,为了充分发挥其潜力,需要人类的监督。
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引用次数: 0
De novo design and evolution of an artificial metathase for cytoplasmic olefin metathesis 一种用于细胞质烯烃转化的人工转化酶的从头设计和进化
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-11-03 DOI: 10.1038/s41929-025-01436-0
Zhi Zou, Indrek Kalvet, Boris Lozhkin, Elinor Morris, Kailin Zhang, Dongping Chen, Marco L. Ernst, Xiang Zhang, David Baker, Thomas R. Ward
Artificial metalloenzymes present a promising avenue for abiotic catalysis within living systems. However, their in vivo application is currently limited by critical challenges, particularly in selecting suitable protein scaffolds capable of binding abiotic cofactors and maintaining catalytic activity in complex media. Here we address these limitations by introducing an artificial metathase—an artificial metalloenzyme designed for ring-closing metathesis—for whole-cell biocatalysis. Our approach integrates a tailored metal cofactor into a hyper-stable, de novo-designed protein. By combining computational design with genetic optimization, a binding affinity (KD ≤ 0.2 μM) between the protein scaffold and cofactor is achieved through supramolecular anchoring. Directed evolution of the artificial metathase yielded variants exhibiting excellent catalytic performance (turnover number ≥1,000) and biocompatibility. This work represents a pronounced leap in the de novo design and in cellulo engineering of artificial metalloenzymes, paving the way for abiological catalysis in living systems. The creation of artificial metalloenzymes compatible with complex biological settings could enable broad applications. Now a de novo-designed artificial metalloenzyme containing an abiological ruthenium cofactor is reported and optimized for ring-closing metathesis in the cytoplasm of whole cells.
人工金属酶为生物系统内的非生物催化提供了一条很有前途的途径。然而,它们在体内的应用目前受到关键挑战的限制,特别是在选择合适的蛋白质支架能够结合非生物辅助因子和在复杂介质中保持催化活性方面。在这里,我们通过引入一种用于全细胞生物催化的人工复合酶-一种用于闭合环复合的人工金属酶来解决这些限制。我们的方法将定制的金属辅因子集成到超稳定的、全新设计的蛋白质中。将计算设计与遗传优化相结合,通过超分子锚定实现蛋白支架与辅因子之间的结合亲和力(K D≤0.2 μM)。人工中间酶的定向进化产生了具有优异催化性能(周转数≥1000)和生物相容性的变体。这项工作代表了人工金属酶的从头设计和纤维素工程的一个显著飞跃,为生命系统中的非生物催化铺平了道路。
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引用次数: 0
Photobiocatalytic radical repositioning for enantioselective acylation of remote C–C/C–H bonds 远端C-C / C-H键对映选择性酰化的光生物催化自由基重定位
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-11-03 DOI: 10.1038/s41929-025-01435-1
Yang Ming, Zhouping Wu, Yuanyuan Xu, Yao Chen, Zhongqiu Xing, Xichao Peng, Jianlin Chun, Hailong Sun, Jiayu Wu, Yu Zheng, Ling Jiang, Xiaoqiang Huang
Radical repositioning, a transformative strategy for activating remote C–C/C–H bonds through the relocation of unpaired electrons, remains unexplored in biological systems. Recent advances in photogenerated nitrogen-centred radicals (NCRs) have enabled radical 1,2- to 1,n-translocations for organic synthesis, but achieving stereochemical control over the repositioned prochiral radicals is challenging. Here we introduce a visible light-promoted, thiamine-dependent radical biocatalytic system that leverages NCR-triggered radical repositioning for the enantioselective acylation of remote C–C/C–H bonds. Synergistic single-electron transfer and thiamine cofactor-mediated biocatalysis enables the generation of NCRs, which translocate to remote carbon-centred radicals via 1,n-hydrogen atom transfer or C–C fragmentation, and facilitates the subsequent radical cross-coupling within the active site, producing diverse chiral nitriles and amides with a remote carbonyl group (43 examples with a δ-, ε-, ζ- or η-position relative to the N atom) in good-to-excellent enantiomeric ratios (up to 99.5:0.5). This strategy couples radical repositioning and enzymes to unlock the selective functionalization of remote C–H/C–C bonds. Radical repositioning to activate remote bonds is underdeveloped in synthetic biocatalysis. Now a photobiocatalytic system couples light-driven single-electron transfer and the relocation of unpaired electrons to activate remote C–C and C–H bonds for enzymatically controlled enantioselective acylation.
自由基重定位是一种通过未配对电子的重新定位激活远程C-C / C-H键的变革性策略,在生物系统中仍未被探索。光生成氮中心自由基(NCRs)的最新进展使1,2-到1,n-自由基易位能够用于有机合成,但对重新定位的前手性自由基进行立体化学控制是具有挑战性的。在这里,我们介绍了一种可见光促进的硫胺素依赖的自由基生物催化系统,该系统利用ncr触发的自由基重定位来进行远端C-C / C-H键的对端选择性酰化。协同的单电子转移和硫胺素辅助因子介导的生物催化能够产生ncr, ncr通过1,n-氢原子转移或C-C断裂转移到远端碳中心自由基上,并促进活性位点内随后的自由基交叉偶联,产生具有远端羰基的各种手性腈和酰胺(43个例子相对于N原子具有δ-, ε-, ζ-或η-位置),对构象比良好(高达99.5:0.5)。这种策略结合了自由基重新定位和酶来解锁远程C-H / C-C键的选择性功能化。自由基重新定位激活远程键在合成生物催化中尚不发达。现在,光生物催化系统将光驱动的单电子转移和未配对电子的重新定位结合起来,激活远端C-C和C-H键,进行酶控制的对映选择性酰化。
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引用次数: 0
Bismuth-photocatalysed Heck-type coupling with alkyl and aryl electrophiles 铋光催化与烷基和芳基亲电试剂的heck型偶联
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-10-31 DOI: 10.1038/s41929-025-01438-y
Shengyang Ni, Alexios Stamoulis, Vanessa A. Béland, Josep Cornella
The Heck reaction, which is widely used for the construction of C‒C bonds, is a cornerstone of modern organic synthesis. Traditionally, this transformation relies on transition metal catalysts, whose frontier d-orbitals cement the mechanism and scope of the reaction. Here we present a conceptually distinct Heck-type coupling strategy that replaces transition metals with a photoactive bismuth complex, marking an advance in main group catalysis. This approach leverages the distinctive electronic and photophysical properties of bismuth, providing a reimagined reaction pathway. The bismuth catalyst undergoes a photo-induced ligand-to-metal charge transfer processes, unmasking a Bi(II) species capable of halogen atom transfer (XAT) processes with alkyl iodides. The multifaceted redox-dependent photophysical properties of the bismuth catalyst facilitate the coupling of aryl and alkyl electrophiles with styrenes through an intricate interplay of mechanistic steps. The method provides a mechanistic blueprint for accessing coveted Bi(II) species, offering an alternative to transition metal catalysis in organic synthesis. The Heck reaction is widely used in modern organic chemistry. Here the authors provide an alternative approach to common transition-metal catalysis, leveraging access to Bi(II) species thanks to bismuth’s photophysical properties.
赫克反应被广泛用于构建碳-碳键,是现代有机合成的基石。传统上,这种转化依赖于过渡金属催化剂,其前沿d轨道确定了反应的机理和范围。在这里,我们提出了一个概念上不同的heck型偶联策略,用光活性铋配合物取代过渡金属,标志着主基团催化的进步。这种方法利用铋独特的电子和光物理性质,提供了一种重新想象的反应途径。铋催化剂经历了光诱导的配体到金属的电荷转移过程,揭示了能够与烷基碘化物进行卤素原子转移(XAT)过程的Bi(II)物质。铋催化剂具有多方面的氧化还原依赖光物理性质,通过复杂的机理步骤促进芳基和烷基亲电试剂与苯乙烯的偶联。该方法为获得令人垂涎的Bi(II)物种提供了一种机制蓝图,为有机合成中的过渡金属催化提供了一种替代方法。
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引用次数: 0
DNA phosphates are effective catalysts for asymmetric ion-pairing catalysis in water DNA磷酸盐是水中不对称离子对催化的有效催化剂
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-10-31 DOI: 10.1038/s41929-025-01437-z
Zhaoyang Li, Yang Zheng, Qi Zhao, Yihan Li, Adon Yap, Xinglong Zhang, Ru-Yi Zhu
Ionic interactions between DNA phosphates and positively charged amino acid residues in aqueous environments are ubiquitous and essential across all biological systems. Such interactions are readily disrupted by polar solvents according to Coulomb’s law, which accounts for the predominant use of non-polar or weakly polar organic solvents in chiral phosphate-mediated asymmetric organocatalysis. This intriguing discrepancy prompted us to exploit the possibility of conducting asymmetric catalysis in water with intrinsically chiral and abundant DNA phosphates. Here we experimentally and computationally demonstrate that DNA phosphates play a critical role in rate acceleration and stereoinduction through ion-pairing interactions with cationic reagents, featuring a cation-dependent dynamic and adaptive nature of the DNA catalyst rarely seen in highly specific enzymatic systems. The application of DNA phosphates to mediate asymmetric reactions is underdeveloped in synthetic chemistry. Now, DNA phosphates are designed to catalyse enantioselective fluorination, Mannich and photo-induced cross-dehydrogenative coupling reactions in water driven by ion-pairing interactions.
在水环境中,DNA磷酸盐和带正电的氨基酸残基之间的离子相互作用在所有生物系统中都是普遍存在的。根据库仑定律,这种相互作用很容易被极性溶剂破坏,这就解释了在手性磷酸盐介导的不对称有机催化中主要使用非极性或弱极性有机溶剂。这种有趣的差异促使我们探索在具有固有手性和丰富的DNA磷酸盐的水中进行不对称催化的可能性。在这里,我们通过实验和计算证明,DNA磷酸盐通过与阳离子试剂的离子配对相互作用,在速率加速和立体诱导中起着关键作用,具有在高度特异性的酶系统中罕见的阳离子依赖的DNA催化剂的动态和适应性性质。应用DNA磷酸盐介导不对称反应在合成化学中尚不发达。现在,DNA磷酸盐被设计用于催化由离子配对相互作用驱动的水中对映选择性氟化、曼尼希和光诱导的交叉脱氢偶联反应。
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引用次数: 0
Atom-economic enantioselective photoenzymatic radical hydroalkylation via single-electron oxidation of carbanions 通过单电子氧化碳离子的原子经济对映选择性光酶自由基烷基化
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-10-31 DOI: 10.1038/s41929-025-01434-2
Jin Zhu, Qiaoyu Zhang, Tao Gu, Binbin Chen, Mingzhe Ma, Xiaoyu Wang, Xiao Liu, Mingjie Ma, Binju Wang, Yajie Wang
Established strategies for enantioselective hydroalkylation for C(sp3)–C(sp3) bond formation usually require prefunctionalized substrates as radical precursors in both transition-metal and photoenzymatic catalysis. Here, based on a sequential proton transfer/electron transfer strategy, we show a cooperative photoenzymatic system consisting of a flavin-dependent ‘ene’-reductase and an organophotoredox catalyst fluorescein (FI) to achieve atom-economic enantiodivergent hydroalkylation of electron-deficient C(sp3)–H with olefins. Mechanistic studies revealed a pathway for radical intermediate formation via excited-state FI*-induced single-electron oxidation of carbanions under alkaline conditions. The overall catalytic efficiency is enhanced by the electron transfer between FMNox and FI−•, while the stereoselectivity is controlled by ene-reductases through enantioselective hydrogen atom transfer. We anticipate that this mode of photoenzymatic catalysis will inspire new pathways for generating free radical intermediates and foster innovative strategies for achieving photoenzymatic new-to-nature reactions. Constructing C(sp3)–C(sp3) bonds using non-prefunctionalized substrates as radical precursors is challenging. Now an ene-reductase and an organophotoredox catalyst work together to enable the enantiodivergent hydroalkylation of electron-deficient C(sp3)–H bonds via radical intermediates generated from carbanions.
在过渡金属和光酶催化中,C(sp3) -C (sp3)键形成的对映选择性氢烷基化策略通常需要预功能化底物作为自由基前体。在这里,基于顺序质子转移/电子转移策略,我们展示了一个由黄素依赖的“烯”还原酶和有机光氧化还原催化剂荧光素(FI)组成的协同光酶系统,以实现缺乏电子的C(sp3) -H与烯烃的原子经济对映发散氢烷基化。机理研究揭示了一种在碱性条件下通过激发态FI*诱导碳离子的单电子氧化形成自由基中间体的途径。FMNox与FI−•之间的电子转移提高了整体催化效率,而立体选择性则由烯还原酶通过对映选择性氢原子转移控制。我们预计这种模式的光酶催化将激发产生自由基中间体的新途径,并促进实现光酶新自然反应的创新策略。利用非预功能化底物作为自由基前体构建C(sp3) -C (sp3)键具有挑战性。现在,一种烯还原酶和一种有机光氧化还原催化剂共同作用,通过碳离子产生的自由基中间体,使缺电子的C(sp3) -H键发生对映发散的氢烷基化。
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引用次数: 0
Single-molecule reaction mapping uncovers diverse behaviours of electrocatalytic surface Pd–H intermediates 单分子反应作图揭示了电催化表面Pd-H中间体的多种行为
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-10-27 DOI: 10.1038/s41929-025-01429-z
Wenjie Li, Muwen Yang, Zhiheng Zhao, Ming Zhao, Rong Ye, Bing Fu, Peng Chen
Many vital electrocatalytic transformations hinge on reactive surface metal–hydrogen intermediates (M–H*), yet the low concentration and transient nature of such intermediates present formidable challenges to in-depth investigation. Here we use single-molecule super-resolution reaction imaging to directly probe surface palladium–hydrogen (Pd–H*) intermediates on individual palladium nanocubes during electrocatalytic hydrogen evolution. Our approach visualizes hydrogen spillover from palladium to the surrounding substrate surface over hundreds of nanometres away and dissects substantial inter- and intraparticle heterogeneity. Through Gaussian-broadening kinetic analysis, we reveal that ensemble-averaged measurements systematically overestimate the stability of Pd–H*. Moreover, we resolve three subpopulations of palladium nanocubes with distinct reactivity features, uncovering critical correlations between intermediate stability, hydrogenation reactivity and transition-state properties. Our findings highlight the necessity of single-particle resolution for capturing the intrinsic complexity of electrocatalysts; our approach is also broadly applicable to interrogate surface-reactive intermediates across a wide array of electrocatalytic pathways. Probing transient intermediates and deriving subsequent mechanistic and kinetic analyses is very challenging. Now, Pd–H* intermediates on palladium nanocubes are identified at the single-particle level by means of single-molecule reaction imaging, evidencing intra- and interparticle heterogeneity and hydrogen spillover events.
许多重要的电催化转化依赖于活性表面金属氢中间体(M-H *),然而这种中间体的低浓度和瞬态性质给深入研究带来了巨大的挑战。在这里,我们使用单分子超分辨率反应成像技术直接探测电催化析氢过程中单个钯纳米立方表面钯氢(Pd-H *)中间体。我们的方法可视化了氢从钯到周围衬底表面数百纳米的溢出,并解剖了大量的颗粒间和颗粒内的非均质性。通过高斯展宽动力学分析,我们发现系综平均测量系统地高估了Pd-H *的稳定性。此外,我们解析了具有不同反应性特征的钯纳米立方的三个亚族,揭示了中间稳定性、加氢反应性和过渡态性质之间的关键相关性。我们的发现强调了捕捉电催化剂内在复杂性的单粒子分辨率的必要性;我们的方法也广泛适用于在广泛的电催化途径中询问表面反应性中间体。探测瞬态中间体并进行后续的力学和动力学分析是非常有挑战性的。现在,钯纳米立方体上的Pd-H *中间体通过单分子反应成像在单颗粒水平上被识别出来,证明了颗粒内和颗粒间的非均质性和氢溢出事件。
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引用次数: 0
Publisher Correction: Semiconductors in pores 出版商更正:毛孔中的半导体
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-10-27 DOI: 10.1038/s41929-025-01448-w
Zhuo Jiang, Xiaofan Shi, Hexiang Deng
{"title":"Publisher Correction: Semiconductors in pores","authors":"Zhuo Jiang, Xiaofan Shi, Hexiang Deng","doi":"10.1038/s41929-025-01448-w","DOIUrl":"10.1038/s41929-025-01448-w","url":null,"abstract":"","PeriodicalId":18845,"journal":{"name":"Nature Catalysis","volume":"8 12","pages":"1382-1382"},"PeriodicalIF":44.6,"publicationDate":"2025-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.nature.comhttps://www.nature.com/articles/s41929-025-01448-w.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145382246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Catalyst optimization through synthetic Darwinian evolution 通过综合达尔文进化优化催化剂
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-10-24 DOI: 10.1038/s41929-025-01414-6
Héctor Soria-Carrera, Job Boekhoven
A study demonstrates that fully synthetic molecules can undergo self-replication, mutation and selection — hallmarks of Darwinian evolution — without relying on DNA or proteins.
一项研究表明,完全合成的分子可以在不依赖DNA或蛋白质的情况下进行自我复制、突变和选择——这是达尔文进化的标志。
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引用次数: 0
期刊
Nature Catalysis
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