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A Tribute to Stephen Allan Baldwin. 致敬斯蒂芬·艾伦·鲍德温。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-01 Epub Date: 2015-06-22 DOI: 10.3109/09687688.2015.1031834
Tony Magee, Peter Henderson, Alison Baker, Vincent Postis, Stephen Muench
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引用次数: 0
The multidrug resistance pump ABCB1 is a substrate for the ubiquitin ligase NEDD4-1. 多药耐药泵ABCB1是泛素连接酶NEDD4-1的底物。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-01 Epub Date: 2015-05-26 DOI: 10.3109/09687688.2015.1023378
Begum G Akkaya, Joseph K Zolnerciks, Tasha K Ritchie, Bjoern Bauer, Anika M S Hartz, James A Sullivan, Kenneth J Linton
Abstract The ATP Binding Cassette transporter ABCB1 can export the neurotoxic peptide β-amyloid from endothelial cells that line the blood-brain barrier (BBB). This has the potential to lower cerebral levels of β-amyloid, but ABCB1 expression in the BBB appears to be progressively reduced in patients with Alzheimer’s disease. The surface density of many membrane proteins is regulated by ubiquitination catalyzed by ubiquitin E3 ligases. In brain capillaries of mice challenged with β-amyloid ex vivo, we show that the level of the ubiquitin ligase Nedd4 increases concomitant with reduction in Abcb1. In vitro we show that human ABCB1 is a substrate for human NEDD4-1 ligase. Recombinant ABCB1 was purified from Sf21 insect cells and incubated with recombinant NEDD4-1 purified from Escherichia coli. The treated ABCB1 had reduced mobility on SDS-PAGE, and mass spectrometry identified eight lysine residues, K271, K272, K575, K685, K877, K885, K887 and K1062 that were ubiquitinated by NEDD4-1. Molecular modelling showed that all of the residues are exposed on the surface of the intracellular domains of ABCB1. K877, K885 and K887 in particular, are located in the intracellular loop of transmembrane helix 10 (TMH10) in close proximity, in the tertiary fold, to a putative NEDD4-1 binding site in the intracellular helix extending from TMH12 (PxY motif, residues 996–998). Transient expression of NEDD4-1 in HEK293 Flp-In cells stably expressing ABCB1 was shown to reduce the surface density of the transporter. Together, the data identify this ubiquitin ligase as a potential target for intervention in the pathophysiology of Alzheimer’s disease.
ATP结合盒转运蛋白ABCB1可以从血脑屏障(BBB)内皮细胞中输出神经毒性肽β-淀粉样蛋白。这有可能降低大脑中β-淀粉样蛋白的水平,但在阿尔茨海默病患者中,血脑屏障中ABCB1的表达似乎逐渐减少。许多膜蛋白的表面密度是由泛素E3连接酶催化的泛素化调控的。在体外β-淀粉样蛋白攻击小鼠的脑毛细血管中,我们发现泛素连接酶Nedd4的水平随着Abcb1的减少而增加。在体外,我们发现人ABCB1是人NEDD4-1连接酶的底物。重组ABCB1从Sf21昆虫细胞中纯化,并与大肠杆菌纯化的重组NEDD4-1孵育。处理后的ABCB1在SDS-PAGE上迁移率降低,质谱鉴定出8个赖氨酸残基K271、K272、K575、K685、K877、K885、K887和K1062被NEDD4-1泛素化。分子模拟表明,所有残基都暴露在ABCB1的胞内结构域表面。尤其是K877、K885和K887,它们位于跨膜螺旋10 (TMH10)的胞内环上,位于第三层,靠近从TMH12延伸出来的胞内螺旋上推测的NEDD4-1结合位点(PxY基序,残基996-998)。在稳定表达ABCB1的HEK293 flip - in细胞中短暂表达NEDD4-1可降低转运蛋白的表面密度。总之,这些数据确定了这种泛素连接酶是干预阿尔茨海默病病理生理的潜在靶标。
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引用次数: 25
Emerging roles of system [Formula: see text] antiporter and its inhibition in CNS disorders. 系统的新角色[公式:见文本]逆向转运蛋白及其在中枢神经系统疾病中的抑制作用。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-01 DOI: 10.3109/09687688.2015.1096972
Dhaval Patel, Prashant S Kharkar, Mukesh Nandave

System [Formula: see text] is an antiporter belonging to the hetero(di)meric amino acid transporter family. It is located on astrocytes as well as on blood-brain barrier within the CNS. It plays a pivotal role in free radical neutralization as well as neuronal signalling by regulating the glutathione production which occurs via the exchange of intracellular glutamate with extracellular cystine at 1:1 molar ratio. Understandably, it is a vital component responsible for the maintenance of neuronal homeostasis (e.g. redox state). Hence, it could be postulated that any perturbation in system [Formula: see text] function may contribute, directly or indirectly, to the pathophysiology of a variety of CNS disorders like Alzheimer's disease, schizophrenia, drug addiction, depression, multiple sclerosis, hypoglycemic neuronal cell death, glioma, and excitotoxicity, making system [Formula: see text] a promising target for treating CNS disorders. In recent times, recognizing the potential of this target, variety of inhibitors has been synthesized by modifying commercially available potent inhibitors including sulfasalazine, erastin, and sorafenib. Although, they have demonstrated efficacy, the in-depth data is still lacking to warrant their use for the treatment of aforementioned CNS disorders. In this review, we discuss the in-depth role of system [Formula: see text] transporter in maintaining normal physiology as well as in the pathophysiology of CNS diseases. Additionally, we have also listed some of the potent inhibitors of system [Formula: see text]. In conclusion, the critical role of system [Formula: see text] in multiple CNS disorders and advanced research on its inhibitors have promising future prospects for better management of the CNS ailments.

系统[公式:见正文]是一种反转运蛋白,属于异(二)氨基转运蛋白家族。它位于中枢神经系统内星形胶质细胞和血脑屏障上。它在自由基中和和神经元信号传导中起着关键作用,通过调节谷胱甘肽的产生,这是通过细胞内谷氨酸与细胞外胱氨酸以1:1的摩尔比交换发生的。可以理解,它是负责维持神经元稳态(例如氧化还原状态)的重要组成部分。因此,可以假设系统功能中的任何干扰都可能直接或间接地导致各种中枢神经系统疾病的病理生理,如阿尔茨海默病、精神分裂症、药物成瘾、抑郁症、多发性硬化症、低血糖性神经元细胞死亡、胶质瘤和兴奋性毒性,使系统成为治疗中枢神经系统疾病的一个有希望的靶点。近年来,认识到这一靶点的潜力,通过修饰市售的有效抑制剂,合成了各种抑制剂,包括磺胺氮嗪、erastin和索拉非尼。尽管它们已经证明了疗效,但仍缺乏深入的数据来保证它们用于治疗上述中枢神经系统疾病。在这篇综述中,我们深入讨论了系统转运体在维持正常生理以及在中枢神经系统疾病病理生理中的作用。此外,我们还列出了一些有效的系统抑制剂[公式:见文本]。总之,该系统在多种中枢神经系统疾病中的关键作用以及对其抑制剂的深入研究为更好地治疗中枢神经系统疾病提供了良好的前景。
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引用次数: 11
Sonic hedgehog multimerization: a self-organizing event driven by post-translational modifications? 音速刺猬多聚化:翻译后修饰驱动的自组织事件?
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-01 Epub Date: 2015-08-27 DOI: 10.3109/09687688.2015.1066895
Mirella V Koleva, Stephen Rothery, Martin Spitaler, Mark A A Neil, Anthony I Magee

Sonic hedgehog (Shh) is a morphogen active during vertebrate development and tissue homeostasis in adulthood. Dysregulation of the Shh signalling pathway is known to incite carcinogenesis. Due to the highly lipophilic nature of this protein imparted by two post-translational modifications, Shh's method of transit through the aqueous extracellular milieu has been a long-standing conundrum, prompting the proposition of numerous hypotheses to explain the manner of its displacement from the surface of the producing cell. Detection of high molecular-weight complexes of Shh in the intercellular environment has indicated that the protein achieves this by accumulating into multimeric structures prior to release from producing cells. The mechanism of assembly of the multimers, however, has hitherto remained mysterious and contentious. Here, with the aid of high-resolution optical imaging and post-translational modification mutants of Shh, we show that the C-terminal cholesterol and the N-terminal palmitate adducts contribute to the assembly of large multimers and regulate their shape. Moreover, we show that small Shh multimers are produced in the absence of any lipid modifications. Based on an assessment of the distribution of various dimensional characteristics of individual Shh clusters, in parallel with deductions about the kinetics of release of the protein from the producing cells, we conclude that multimerization is driven by self-assembly underpinned by the law of mass action. We speculate that the lipid modifications augment the size of the multimolecular complexes through prolonging their association with the exoplasmic membrane.

音速刺猬(Shh)是脊椎动物发育和成年组织稳态过程中活跃的形态发生因子。众所周知,Shh 信号通路失调会诱发癌变。由于这种蛋白质经过两种翻译后修饰后具有高度亲脂性,Shh 在细胞外水环境中的转运方式一直是一个长期存在的难题,促使人们提出了许多假说来解释其从产生细胞表面转移的方式。在细胞间环境中检测到的 Shh 高分子量复合物表明,该蛋白质在从产生细胞释放出来之前是通过积聚成多聚体结构来实现这一目的的。然而,迄今为止,多聚体的组装机制仍然是神秘而有争议的。在此,我们借助高分辨率光学成像和 Shh 翻译后修饰突变体,证明 C 端胆固醇和 N 端棕榈酸酯加合物有助于大型多聚体的组装并调节其形状。此外,我们还发现,在没有任何脂质修饰的情况下,也会产生小的 Shh 多聚体。根据对单个 Shh 簇的各种尺寸特征分布的评估,以及对蛋白质从产生细胞中释放的动力学的推断,我们得出结论:多聚体化是由质量作用定律支持下的自组装驱动的。我们推测,脂质修饰可延长多分子复合物与外质膜的结合,从而增大其体积。
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引用次数: 0
Phosphatidylcholine's functions beyond that of a membrane brick. 磷脂酰胆碱的功能超出了膜砖的功能。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-01 Epub Date: 2015-08-25 DOI: 10.3109/09687688.2015.1066894
Samuel Furse, Anton I P M de Kroon

Since its discovery in the 19th century, phosphatidylcholine (PC) has been regarded primarily as a structural lipid. However, more recent evidence, much of it in the last five years, strongly suggests that PC has other roles. Here, we explore some of that new evidence and consider the possibility that the ultimate role of phosphatidylcholine may not be predictable.

磷脂酰胆碱(PC)自19世纪被发现以来,一直被认为是一种结构脂质。然而,最近的证据(大部分是在过去5年里)强烈表明,个人电脑还有其他作用。在这里,我们探讨了一些新的证据,并考虑磷脂酰胆碱的最终作用可能是不可预测的可能性。
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引用次数: 90
Isolation of lipids from biological samples. 从生物样品中分离脂质。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-01-01 Epub Date: 2015-07-27 DOI: 10.3109/09687688.2015.1050468
Samuel Furse, Maarten R Egmond, J Antoinette Killian

Isolation of the lipid fraction from biological samples has been a crucial part of countless studies over the last century. This considerable research interest has led to the development of a number of methods for isolating a range of molecular species that fall under the umbrella term "lipid". Such methods vary in popularity, complexity, specificity and even toxicity. In this review, we explore examples of published methods (1952-2014) for isolating lipids from biological samples and attempt to assess the limits of techniques both from a chemical and biological perspective. We also suggest how a suitable method might be chosen for a novel application.

在上个世纪,从生物样品中分离脂质部分一直是无数研究的关键部分。这种相当大的研究兴趣导致了许多方法的发展,用于分离一系列分子物种,属于总术语“脂质”。这些方法在普及程度、复杂性、特异性甚至毒性方面各不相同。在这篇综述中,我们探讨了从生物样品中分离脂质的已发表方法(1952-2014)的例子,并试图从化学和生物学的角度评估技术的局限性。我们还建议如何为新应用选择合适的方法。
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引用次数: 34
The arginine-facing amino acid residue of the rat aquaporin 1 constriction determines solute selectivity according to its size and lipophilicity. 大鼠水通道蛋白1缩窄的精氨酸面氨基酸残基根据其大小和亲脂性决定溶质选择性。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2014-11-01 Epub Date: 2014-10-24 DOI: 10.3109/09687688.2014.960493
Dawid Krenc, Jie Song, Abdulnasser Almasalmeh, Binghua Wu, Eric Beitz

Aquaporins (AQP) are transmembrane channels for small, predominantly uncharged solutes. Their selectivity is partly determined by the aromatic/arginine constriction. Ammonia is similar in size and polarity to water, yet a subset of aquaporins distinguishes between the two. We mutated the constriction of water-selective rat AQP1 to mimic that of the ammonia-permeable human AQP8 by replacing Phenylalanine 56 with histidine, Histidine 180 with isoleucine, and Cysteine 189 with glycine, alone and in combination. Only AQP1 mutants including the H180I exchange increased the ammonia and methylamine tolerance of yeast. In a second set of mutations, we replaced Histidine 180 with alanine, leucine, methionine, phenylalanine, asparagine or glutamine. AQP1 H180A was equivalent to AQP1 H180I. AQP1 H180L increased ammonia but not methylamine tolerance of yeast. AQP1 mutants with methionine, phenylalanine, asparagine or glutamine in place of Histidine 180, increased neither ammonia nor methylamine tolerance of yeast. All mutants conducted water, as judged by osmotic assays with yeast sphaeroplasts. We propose that the arginine-facing amino acid residue is the most versatile selector of aquaporin constrictions, excluding Escherichia coli glycerol facilitator-type aquaporins.

水通道蛋白(AQP)是小的、主要不带电的溶质的跨膜通道。它们的选择性部分取决于芳香族/精氨酸的收缩。氨在大小和极性上与水相似,但水通道蛋白的一个子集将两者区分开来。我们通过将苯丙氨酸56替换为组氨酸,将组氨酸180替换为异亮氨酸,将半胱氨酸189替换为甘氨酸,分别对水选择性大鼠AQP1的收缩进行突变,以模仿氨渗透性人类AQP8的收缩。只有含有H180I交换的AQP1突变体增加了酵母对氨和甲胺的耐受性。在第二组突变中,我们用丙氨酸、亮氨酸、蛋氨酸、苯丙氨酸、天冬酰胺或谷氨酰胺取代组氨酸180。AQP1 H180A与AQP1 H180I等效。AQP1 H180L增加了酵母菌对氨的耐受性,但没有增加对甲胺的耐受性。用蛋氨酸、苯丙氨酸、天冬酰胺或谷氨酰胺代替组氨酸180的AQP1突变体对氨和甲胺的耐受性均未增加。通过酵母球质体渗透试验判断,所有突变体都能传导水分。我们认为,除大肠杆菌甘油促进剂型水通道蛋白外,面向精氨酸的氨基酸残基是水通道蛋白收缩的最通用选择器。
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引用次数: 10
Cholesterol modulates the interaction of the islet amyloid polypeptide with membranes. 胆固醇调节胰岛淀粉样多肽与细胞膜的相互作用。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2014-11-01 Epub Date: 2014-12-15 DOI: 10.3109/09687688.2014.987182
Lucie Caillon, Luminita Duma, Olivier Lequin, Lucie Khemtemourian

The deposition of insoluble amyloid fibrils resulting from the aggregation of the human islet amyloid polypeptide (hIAPP) within the islet of Langerhans is a pathological feature of type 2 diabetes mellitus (T2DM). Increasing evidence indicates that biological membranes play a key role in amyloid aggregation, modulating among others the kinetics of amyloid formation, and being the target of toxic species generated during amyloid formation. In T2DM patients, elevated levels of cholesterol, an important determinant of the physical state of biological membranes, are observed in β-cells and are thought to directly impair β-cell function and insulin secretion. However, it is not known whether cholesterol enhances membrane-interaction or membrane-insertion of hIAPP. In this study, we investigated the effect of cholesterol incorporated in zwitterionic and anionic membranes. Our circular dichroism and liquid state NMR data reveal that 10-30% of cholesterol slightly affects the aggregational and conformational behaviour of hIAPP. Additional fluorescence results indicate that 10 and 20% of cholesterol slightly slow down the kinetics of oligomer and fibril formation while anionic lipids accelerate this kinetics. This behavior might be caused by differences in membrane insertion and therefore in membrane binding of hIAPP. The membrane binding affinity was evaluated using (1)H NMR experiments and our results show that the affinity of hIAPP for membranes containing cholesterol is significantly smaller than that for membranes containing anionic lipids. Furthermore, we found that hIAPP-induced membrane damage is synchronized to fibril formation in the absence and in the presence of cholesterol.

人胰岛淀粉样蛋白多肽(hIAPP)在朗格汉斯胰岛内聚集导致不溶性淀粉样蛋白原纤维沉积是2型糖尿病(T2DM)的病理特征。越来越多的证据表明,生物膜在淀粉样蛋白聚集、调节淀粉样蛋白形成的动力学等方面起着关键作用,并且是淀粉样蛋白形成过程中产生的有毒物质的靶标。在2型糖尿病患者中,β细胞中观察到胆固醇水平升高,这是生物膜物理状态的重要决定因素,被认为直接损害β细胞功能和胰岛素分泌。然而,目前尚不清楚胆固醇是否会增强hIAPP的膜相互作用或膜插入。在这项研究中,我们研究了胆固醇掺入两性离子和阴离子膜的影响。我们的圆二色性和液态核磁共振数据显示,10-30%的胆固醇轻微影响hIAPP的聚集和构象行为。另外的荧光结果表明,10%和20%的胆固醇略微减缓了低聚物和纤维形成的动力学,而阴离子脂质则加速了这一动力学。这种行为可能是由hIAPP的膜插入和膜结合的差异引起的。通过(1)H NMR实验评估了膜结合亲和力,结果表明hIAPP对含胆固醇的膜的亲和力明显小于含阴离子脂质的膜。此外,我们发现hiapp诱导的膜损伤在胆固醇存在和不存在的情况下与纤维形成同步。
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引用次数: 23
Differential roles of tryptophan residues in the functional expression of human anion exchanger 1 (AE1, Band 3, SLC4A1). 色氨酸残基在人阴离子交换器1 (AE1, Band 3, SLC4A1)功能表达中的差异作用。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2014-11-01 Epub Date: 2014-09-26 DOI: 10.3109/09687688.2014.955829
Yuka Okawa, Jing Li, Arghya Basu, Joseph R Casey, Reinhart A F Reithmeier

Anion exchanger 1 (AE1) is a 95 kDa glycoprotein that facilitates Cl(-)=HCO(-)(3) exchange across the erythrocyte plasma membrane. This transport activity resides in the 52 kDa C-terminal membrane domain (Gly(361)-Val(911)) predicted to span the membrane 14 times. To explore the role of tryptophan (Trp) residues in AE1 function, the seven endogenous Trp residues in the membrane domain were mutated individually to alanine (Ala) and phenylalanine (Phe). Expression levels, cell surface abundance, inhibitor binding and transport activities of the mutants were measured upon expression in HEK-293 cells. The seven Trp residues divided into three classes according the impact of mutations on the functional expression of AE1: Class 1, dramatically decreased expression (Trp(492) and Trp(496)); Class 2, decreased expression by Ala substitution but not Phe (Trp(648), Trp(662) and Trp(723)); and Class 3, normal expression (Trp(831) and Trp(848)). The results indicate that Trp residues play differential roles in AE1 expression and function depending on their location in the protein and that Trp mutants with low expression are misfolded and retained in the endoplasmic reticulum.

阴离子交换器1 (AE1)是一种95 kDa的糖蛋白,促进Cl(-)=HCO(-)(3)在红细胞膜上的交换。这种转运活性位于52 kDa的c端膜结构域(Gly(361)-Val(911)),预计跨越膜14次。为了探究色氨酸(Trp)残基在AE1功能中的作用,我们将膜结构域的7个内源性Trp残基分别突变为丙氨酸(Ala)和苯丙氨酸(Phe)。在HEK-293细胞中表达后,检测突变体的表达水平、细胞表面丰度、抑制剂结合和转运活性。根据突变对AE1功能表达的影响,将7个Trp残基分为3类:1类,显著降低表达(Trp(492)和Trp(496));第2类,Ala取代导致表达减少,而非Phe (Trp(648), Trp(662)和Trp(723));3类正常表达(Trp(831)和Trp(848))。结果表明,Trp残基在AE1的表达和功能中发挥着不同的作用,这取决于它们在蛋白质中的位置,低表达的Trp突变体被错误折叠并保留在内质网中。
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引用次数: 5
Pyruvate dehydrogenase complex (PDC) export from the mitochondrial matrix. 丙酮酸脱氢酶复合物(PDC)从线粒体基质出口。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2014-11-01 Epub Date: 2014-12-15 DOI: 10.3109/09687688.2014.987183
Fanny Ng, Bor Luen Tang

Studies on mitochondria protein import had revealed in detail molecular mechanisms of how peptides and proteins could be selectively targeted and translocated across membrane bound organelles. The opposite process of mitochondrial export, while known to occur in various aspects of cellular physiology and pathology, is less well understood. Two very recent reports have indicated that a large mitochondrial matrix protein complex, the pyruvate dehydrogenase complex (PDC) (or its component subunits), could be exported to the lysosomes and the nucleus, respectively. In the case of the latter, evidence was presented to suggest that the entire complex of 8-10 MDa could translocate in its entirety from the mitochondrial matrix to the nucleus upon mitogenic or stress stimuli. We discuss these findings in perspective to what is currently known about the processes of transport in and out of the mitochondrion.

线粒体蛋白质输入的研究揭示了肽和蛋白质如何选择性靶向和跨膜结合细胞器易位的分子机制。线粒体输出的相反过程,虽然已知发生在细胞生理和病理的各个方面,但却不太清楚。最近的两份报告表明,一个大的线粒体基质蛋白复合物,丙酮酸脱氢酶复合物(PDC)(或其组成亚基),可以分别出口到溶酶体和细胞核。在后者的情况下,有证据表明,在有丝分裂或应激刺激下,整个8-10 MDa复合体可以全部从线粒体基质转移到细胞核。我们从目前已知的线粒体内外转运过程的角度来讨论这些发现。
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引用次数: 21
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Molecular Membrane Biology
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