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Staphylococcus aureus adapts to exploit collagen-derived proline during chronic infection 金黄色葡萄球菌在慢性感染期间适应利用源自胶原的脯氨酸
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-12 DOI: 10.1038/s41564-024-01769-9
Andreacarola Urso, Ian R. Monk, Ying-Tsun Cheng, Camilla Predella, Tania Wong Fok Lung, Erin M. Theiller, Jack Boylan, Sofya Perelman, Swikrity U. Baskota, Ahmed M. Moustafa, Gaurav Lohia, Ian A. Lewis, Benjamin P. Howden, Timothy P. Stinear, Nicolino V. Dorrello, Victor Torres, Alice S. Prince
Staphylococcus aureus is a pulmonary pathogen associated with substantial human morbidity and mortality. As vaccines targeting virulence determinants have failed to be protective in humans, other factors are likely involved in pathogenesis. Here we analysed transcriptomic responses of human clinical isolates of S. aureus from initial and chronic infections. We observed upregulated collagenase and proline transporter gene expression in chronic infection isolates. Metabolomics of bronchiolar lavage fluid and fibroblast infection, growth assays and analysis of bacterial mutant strains showed that airway fibroblasts produce collagen during S. aureus infection. Host-adapted bacteria upregulate collagenase, which degrades collagen and releases proline. S. aureus then imports proline, which fuels oxidative metabolism via the tricarboxylic acid cycle. Proline metabolism provides host-adapted S. aureus with a metabolic benefit enabling out-competition of non-adapted strains. These data suggest that clinical settings characterized by airway repair processes and fibrosis provide a milieu that promotes S. aureus adaptation and supports infection. Staphylococcus aureus upregulates collagenase and proline transporters to release collagen-derived proline and exploit fibroblasts as a nutrient source during chronic infection.
金黄色葡萄球菌是一种肺部病原体,与人类的大量发病和死亡有关。由于针对毒力决定因素的疫苗未能对人类产生保护作用,因此致病机理很可能与其他因素有关。在此,我们分析了初次感染和慢性感染的人类临床分离金黄色葡萄球菌的转录组反应。我们观察到慢性感染分离株的胶原酶和脯氨酸转运体基因表达上调。支气管灌洗液和成纤维细胞感染的代谢组学、生长试验和细菌突变株分析表明,气道成纤维细胞在金黄色葡萄球菌感染期间会产生胶原蛋白。适应宿主的细菌上调胶原酶,从而降解胶原并释放脯氨酸。然后,金黄色葡萄球菌输入脯氨酸,通过三羧酸循环促进氧化代谢。脯氨酸代谢为适应宿主的金黄色葡萄球菌提供了新陈代谢益处,使其能够超越非适应菌株。这些数据表明,以气道修复过程和纤维化为特征的临床环境提供了一个促进金黄色葡萄球菌适应和支持感染的环境。
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引用次数: 0
Author Correction: Commensal production of a broad-spectrum and short-lived antimicrobial peptide polyene eliminates nasal Staphylococcus aureus. 作者更正:共生菌产生的广谱短效抗菌肽多烯可消灭鼻腔金黄色葡萄球菌
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-08 DOI: 10.1038/s41564-024-01798-4
Benjamin O Torres Salazar, Taulant Dema, Nadine A Schilling, Daniela Janek, Jan Bornikoel, Anne Berscheid, Ahmed M A Elsherbini, Sophia Krauss, Simon J Jaag, Michael Lämmerhofer, Min Li, Norah Alqahtani, Malcolm J Horsburgh, Tilmann Weber, José Manuel Beltrán-Beleña, Heike Brötz-Oesterhelt, Stephanie Grond, Bernhard Krismer, Andreas Peschel
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引用次数: 0
Bringing microbial ecology into focus 聚焦微生物生态学。
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-06 DOI: 10.1038/s41564-024-01785-9
This month’s issue of Nature Microbiology has a focus on microbial ecology, showcasing how these dynamics might be harnessed to better understand and safeguard life on Earth.
本月的《自然-微生物学》(Nature Microbiology)杂志以微生物生态学为主题,展示了如何利用这些动态来更好地了解和保护地球上的生命。
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引用次数: 0
Quantitative principles of microbial metabolism shared across scales 跨尺度共享微生物新陈代谢的定量原则
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-06 DOI: 10.1038/s41564-024-01764-0
Daniel Sher, Daniel Segrè, Michael J. Follows
Metabolism is the complex network of chemical reactions occurring within every cell and organism, maintaining life, mediating ecosystem processes and affecting Earth’s climate. Experiments and models of microbial metabolism often focus on one specific scale, overlooking the connectivity between molecules, cells and ecosystems. Here we highlight quantitative metabolic principles that exhibit commonalities across scales, which we argue could help to achieve an integrated perspective on microbial life. Mass, electron and energy balance provide quantitative constraints on their flow within metabolic networks, organisms and ecosystems, shaping how each responds to its environment. The mechanisms underlying these flows, such as enzyme–substrate interactions, often involve encounter and handling stages that are represented by equations similar to those for cells and resources, or predators and prey. We propose that these formal similarities reflect shared principles and discuss how their investigation through experiments and models may contribute to a common language for studying microbial metabolism across scales. Mass, electron and energy balances define metabolic networks in a cell, but this framework could also be applied to interactions, ecosystems and global processes, creating a common language for microbial metabolism across scales.
新陈代谢是发生在每个细胞和生物体内的复杂的化学反应网络,它维持生命、调节生态系统过程并影响地球气候。微生物新陈代谢的实验和模型通常只关注一个特定的尺度,而忽略了分子、细胞和生态系统之间的联系。在此,我们强调了在不同尺度上表现出共性的定量代谢原理,我们认为这些原理有助于从综合角度看待微生物生命。质量、电子和能量平衡为它们在新陈代谢网络、生物体和生态系统中的流动提供了定量约束,影响着每种物质如何对环境做出反应。这些流动的基本机制,如酶与底物的相互作用,往往涉及相遇和处理阶段,这些阶段用类似于细胞与资源或捕食者与猎物的方程来表示。我们认为,这些形式上的相似性反映了共同的原理,并讨论了如何通过实验和模型对其进行研究,从而为跨尺度的微生物新陈代谢研究提供一种共同语言。
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引用次数: 0
Darwin’s expedition revisited to reveal the evolution of plant–microbe interactions on Galápagos 重访达尔文的探险,揭示加拉帕戈斯植物与微生物相互作用的进化过程
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-06 DOI: 10.1038/s41564-024-01749-z
Viviane Cordovez, Víctor J. Carrión, Gonzalo Rivas Torres, Diego A. Ortiz, Wilson Cabrera, Haig Balian, Adriana Karina Vivanco, Juan E. Pérez-Jaramillo, Jaime Chaves, Diana A. Pazmiño, Pieter van ’t Hof, Jos M. Raaijmakers
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引用次数: 0
Aspergillus cvjetkovicii protects against phytopathogens through interspecies chemical signalling in the phyllosphere cvjetkovicii 曲霉通过叶球中的种间化学信号来抵御植物病原体
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-05 DOI: 10.1038/s41564-024-01781-z
Xiaoyan Fan, Haruna Matsumoto, Haorong Xu, Hongda Fang, Qianqian Pan, Tianxing Lv, Chengfang Zhan, Xiaoxiao Feng, Xiaoyu Liu, Danrui Su, Mengyuan Fan, Zhonghua Ma, Gabriele Berg, Shaojia Li, Tomislav Cernava, Mengcen Wang
Resident microbiota produces small molecules that influence the chemical microenvironments on leaves, but its signalling roles in pathogen defence are not yet well understood. Here we show that Aspergillus cvjetkovicii, enriched in rice leaf microbiota, subverts Rhizoctonia solani infections via small-molecule-mediated interspecies signalling. 2,4-Di-tert-butylphenol (2,4-DTBP), identified as a key signalling molecule within the Aspergillus-enriched microbiota, effectively neutralizes reactive oxygen species-dependent pathogenicity by switching off bZIP-activated AMT1 transcription in R. solani. Exogenous application of A. cvjetkovicii and 2,4-DTBP demonstrated varying degrees of protective effects against R. solani infection in diverse crops, including cucumber, maize, soybean and tomato. In rice field experiments, they reduced the R. solani-caused disease index to 19.7–32.2%, compared with 67.2–82.6% in the control group. Moreover, 2,4-DTBP showed activity against other rice phytopathogens, such as Fusarium fujikuroi. These findings reveal a defensive strategy against phytopathogens in the phyllosphere, highlighting the potential of symbiotic microbiota-driven neutralization of pathogenicity. Beneficial Aspergillus cvjetkovicii protects host plants against fungal diseases by inactivating pathogenicity-related gene transcription of phytopathogens via 2,4-DTBP signalling.
常驻微生物群产生的小分子可影响叶片上的化学微环境,但其在病原体防御中的信号作用尚未得到充分了解。在这里,我们展示了水稻叶片微生物群中富集的曲霉 cvjetkovicii 通过小分子介导的种间信号转导来颠覆根瘤菌的感染。2,4-二叔丁基苯酚(2,4-DTBP)被确定为曲霉富集微生物群中的一种关键信号分子,它通过关闭 bZIP 激活的 R. solani AMT1 转录,有效地中和了活性氧依赖的致病性。外源施用 A. cvjetkovicii 和 2,4-DTBP 对不同作物(包括黄瓜、玉米、大豆和番茄)的 R. solani 感染具有不同程度的保护作用。在水稻田间试验中,它们将 R. solani 引起的病害指数降低到 19.7-32.2%,而对照组为 67.2-82.6%。此外,2,4-DTBP 对其他水稻植物病原菌,如镰刀菌也有活性。这些发现揭示了植物叶球对植物病原体的防御策略,突出了共生微生物群驱动的中和致病性的潜力。
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引用次数: 0
Microscopy methods map mobile genetic elements and their bacterial hosts 显微镜方法绘制移动遗传元素及其细菌宿主图谱
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-05 DOI: 10.1038/s41564-024-01774-y
Mobile genetic element fluorescence in situ hybridization (MGE-FISH) creates spatial maps of target genes in microbiomes. We combine MGE-FISH with high phylogenetic resolution FISH (HiPR-FISH) to simultaneously map bacterial taxa and mobile genetic elements such as plasmids and phage, identifying their host taxa and revealing mobile genetic element spatial distribution.
移动遗传因子荧光原位杂交(MGE-FISH)可绘制微生物群目标基因的空间图谱。我们将 MGE-FISH 与高系统发育分辨率荧光原位杂交(HiPR-FISH)相结合,同时绘制细菌类群和移动遗传因子(如质粒和噬菌体)的图谱,从而确定其宿主类群并揭示移动遗传因子的空间分布。
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引用次数: 0
Angiopoietin-like 4 protects against endothelial dysfunction during bacterial sepsis 血管生成素样 4 可防止细菌性败血症期间的内皮功能障碍
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-05 DOI: 10.1038/s41564-024-01760-4
Jason Ziveri, Loïc Le Guennec, Isabel dos Santos Souza, Jean-Philipe Barnier, Samuel M. Walter, Youssouf Diallo, Yasmine Smail, Elodie Le Seac’h, Haniaa Bouzinba-Segard, Camille Faure, Philippe C. Morand, Irié Carel, Nicolas Perriere, Taliah Schmitt, Brigitte Izac, Franck Letourneur, Mathieu Coureuil, Thomas Rattei, Xavier Nassif, Sandrine Bourdoulous
Loss of endothelial integrity and vascular leakage are central features of sepsis pathogenesis; however, no effective therapeutic mechanisms for preserving endothelial integrity are available. Here we show that, compared to dermal microvessels, brain microvessels resist infection by Neisseria meningitidis, a bacterial pathogen that causes sepsis and meningitis. By comparing the transcriptional responses to infection in dermal and brain endothelial cells, we identified angiopoietin-like 4 as a key factor produced by the brain endothelium that preserves blood–brain barrier integrity during bacterial sepsis. Conversely, angiopoietin-like 4 is produced at lower levels in the peripheral endothelium. Treatment with recombinant angiopoietin-like 4 reduced vascular leakage, organ failure and death in mouse models of lethal sepsis and N. meningitidis infection. Protection was conferred by a previously uncharacterized domain of angiopoietin-like 4, through binding to the heparan proteoglycan, syndecan-4. These findings reveal a potential strategy to prevent endothelial dysfunction and improve outcomes in patients with sepsis. Therapeutic administration of angiopoietin-like 4 prevents shock during Neisseria meningitidis infection or lipopolysaccharide-induced sepsis in mice.
内皮完整性丧失和血管渗漏是败血症发病机制的核心特征;然而,目前还没有保护内皮完整性的有效治疗机制。在这里,我们发现与真皮微血管相比,脑微血管能抵抗脑膜炎奈瑟菌的感染,脑膜炎奈瑟菌是一种能导致败血症和脑膜炎的细菌病原体。通过比较皮肤内皮细胞和脑内皮细胞对感染的转录反应,我们发现血管生成素样 4 是脑内皮细胞产生的一种关键因子,它能在细菌性败血症期间保持血脑屏障的完整性。相反,外周内皮细胞产生的血管生成素样 4 水平较低。用重组类血管生成素 4 治疗致命性败血症和脑膜炎双球菌感染小鼠模型,可减少血管渗漏、器官衰竭和死亡。血管生成素样 4 的一个先前未表征的结构域通过与肝糖蛋白多糖 syndecan-4 结合而提供保护。这些发现揭示了一种预防内皮功能障碍和改善败血症患者预后的潜在策略。
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引用次数: 0
Shining light on the coral photosymbiont family Symbiodiniaceae 揭示珊瑚光合共生科共生藻属的奥秘。
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-02 DOI: 10.1038/s41564-024-01745-3
Madeleine J. H. van Oppen
Madeleine van Oppen describes her research on the family Symbiodiniaceae, the microalgae that could be instrumental in safeguarding coral reefs against the effects of climate change.
Madeleine van Oppen 介绍了她对共生藻科(Symbiodiniaceae)的研究,这种微型藻类可能有助于保护珊瑚礁免受气候变化的影响。
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引用次数: 0
The evolving landscape of live attenuated COVID-19 vaccines 不断发展的 COVID-19 减毒活疫苗。
IF 20.5 1区 生物学 Q1 MICROBIOLOGY Pub Date : 2024-08-02 DOI: 10.1038/s41564-024-01770-2
Simone Pecetta, Rino Rappuoli
A genetic approach based on the introduction of premature termination codons can attenuate SARS-CoV-2 and induce protective mucosal immunity.
基于引入过早终止密码子的基因方法可以减弱 SARS-CoV-2 并诱导保护性粘膜免疫。
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引用次数: 0
期刊
Nature Microbiology
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