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Therapeutic Suppression of Triple-Negative Breast Cancer via Pachymic Acid-Induced KIF18B Inhibition and Ferroptosis Activation. 厚生酸诱导的KIF18B抑制和铁下垂激活对三阴性乳腺癌的治疗性抑制
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-07 DOI: 10.1002/mc.70045
Tao Huang, Jizong Zhang

Triple-negative breast cancer (TNBC) is a particularly aggressive malignant tumor. Pachymic acid (PA), a bioactive triterpenoid, has demonstrated multi-target therapeutic effects in TNBC. However, the detailed molecular networks responsible for its anti-TNBC effects have not yet been fully elucidated. The therapeutic potential of PA was evaluated by measuring cell viability, proliferation, invasion, and migration. The impact on ferroptosis was assessed by detecting ROS, MDA, GSH, and Fe2+ levels. Animal xenograft experiments were used to analyze the role in vivo. Expression analysis was performed using immunoblot, quantitative PCR, and immunohistochemical assays. PA exhibited antiproliferative, anti-migratory, and anti-invasive effects on BT-549 and MDA-MB-231 cells in vitro. PA induced oxidative stress and triggered ferroptosis in BT-549 and MDA-MB-231 cells. Kinesin family member 18B (KIF18B) was overexpressed in TNBC and was reduced by PA treatment. KIF18B restoration counteracted PA-mediated antiproliferative, anti-migratory, anti-invasive, and pro-ferroptosis effects on BT-549 and MDA-MB-231 cells. Furthermore, restored expression of KIF18B attenuated the efficacy of PA in reducing xenograft growth in vivo. Our study demonstrates that PA suppresses TNBC progression by inducing ferroptosis and inhibiting malignant phenotypes through KIF18B downregulation, offering experimental evidence supporting the clinical potential of PA as a novel therapeutic agent for TNBC treatment.

三阴性乳腺癌(TNBC)是一种特别具有侵袭性的恶性肿瘤。厚青酸(PA)是一种具有生物活性的三萜,在TNBC中具有多靶点的治疗作用。然而,其抗tnbc作用的详细分子网络尚未完全阐明。通过测量细胞活力、增殖、侵袭和迁移来评估PA的治疗潜力。通过检测ROS、MDA、GSH和Fe2+水平来评估对铁下垂的影响。采用动物异种移植实验分析其在体内的作用。采用免疫印迹、定量PCR和免疫组织化学方法进行表达分析。PA对BT-549和MDA-MB-231细胞具有抗增殖、抗迁移和抗侵袭作用。PA诱导BT-549和MDA-MB-231细胞氧化应激并诱发铁下垂。Kinesin家族成员18B (KIF18B)在TNBC中过表达,并在PA治疗后降低。KIF18B修复可抵消pa介导的对BT-549和MDA-MB-231细胞的抗增殖、抗迁移、抗侵袭和促铁凋亡作用。此外,恢复KIF18B的表达减弱了PA在体内抑制异种移植物生长的效果。我们的研究表明,PA通过诱导铁下垂抑制TNBC进展,并通过下调KIF18B抑制恶性表型,为PA作为TNBC治疗新药物的临床潜力提供了实验证据。
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引用次数: 0
Novel Metabolic-Prognostic Integration Reveals TCF21-Mediated Mitochondrial Regulation in Endometrial Cancer. 新的代谢-预后整合揭示了tcf21介导的子宫内膜癌线粒体调控。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-22 DOI: 10.1002/mc.70041
Ciren Guo, Jianfeng Zheng, Xuefen Lin, Xiafei Ye, Xinyan Jiang, Yang Sun

Despite endometrial cancer (EC) being a malignancy linked to metabolic disorders such as diabetes and obesity, its prognostic markers and metabolic dysregulation remain incompletely understood. Gene expression profiles and clinical data were obtained from TCGA. Metabolism-regulating genes (MRGs) were identified by intersecting genes linked to diabetes, obesity, and EC prognosis. A prognostic MRG-model was developed using LASSO Cox regression. Functional pathway features of the MRG-model were analyzed for prognostic signals, immune status, and antitumor therapy using methods such as gene set enrichment analysis, GSVA, ssGSEA, EPIC, CIBERSORT, and others. Machine learning algorithms identified the optimal MRG, TCF21, for in vivo and in vitro validation through experiments including colony formation, CCK8 assays, wound healing, Transwell assays, measurement of reactive oxygen species and ATP levels. We identified 72 candidate genes related to EC metabolism and progression. The MRG-model effectively distinguished high-risk from low-risk EC patients and demonstrated strong prognostic predictive capacity. Significant differences were observed between the two groups in clinical factors, functional pathways, immune characteristics, mutation profiles, and treatment recommendations. TCF21, with optimal performance, was selected for further study. TCF21 expression was significantly downregulated in EC and correlated with DNA methylation. As a tumor suppressor, TCF21 regulates proliferation, migration, invasion, and mitochondrial metabolism in EC via PDE2A. The MRG-model can serve as a robust tool for prognostic prediction and support personalized EC treatment, enhancing its clinical potential. TCF21 is methylated in EC, and its regulation of PDE2A governs the malignant phenotype and mitochondrial metabolism.

尽管子宫内膜癌(EC)是一种与代谢紊乱(如糖尿病和肥胖)相关的恶性肿瘤,但其预后指标和代谢失调仍不完全清楚。基因表达谱和临床数据均来自TCGA。代谢调节基因(MRGs)通过与糖尿病、肥胖和EC预后相关的交叉基因进行鉴定。采用LASSO - Cox回归建立预后mri模型。通过基因集富集分析、GSVA、ssGSEA、EPIC、CIBERSORT等方法,分析mrg模型的功能通路特征,以获得预后信号、免疫状态和抗肿瘤治疗。机器学习算法通过菌落形成、CCK8测定、伤口愈合、Transwell测定、活性氧和ATP水平测定等实验,确定了最优的MRG TCF21,用于体内和体外验证。我们确定了72个与EC代谢和进展相关的候选基因。mrg模型能有效区分高危和低危EC患者,并显示出较强的预后预测能力。两组在临床因素、功能途径、免疫特征、突变谱和治疗建议方面存在显著差异。选择性能最优的TCF21进行进一步研究。TCF21在EC中的表达显著下调,并与DNA甲基化相关。作为肿瘤抑制因子,TCF21通过PDE2A调控EC的增殖、迁移、侵袭和线粒体代谢。核磁共振成像模型可以作为预后预测和支持个性化治疗的强大工具,增强其临床潜力。TCF21在EC中甲基化,其对PDE2A的调控控制着恶性表型和线粒体代谢。
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引用次数: 0
Withaferin A Exerts Cytotoxicity in Single/Multidrug-Resistant Gastric and Ovarian Cancer Cells and Tumor Xenografts Through the AKT-NF-κB-STAT3-Survivin Axis. Withaferin A通过AKT-NF-κB-STAT3-Survivin轴对单药/多药耐药胃癌和卵巢癌细胞及肿瘤异种移植物施加细胞毒性。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-30 DOI: 10.1002/mc.70043
Priti S Shenoy, Shubhankar Dash, Diksha Joshi, Bharat Rekhi, Vikram Gota, Pritha Ray

Resistance to primary chemotherapeutics poses a significant challenge in treating solid tumors. The majority of the second-line chemo and targeted therapeutics act moderately/less effectively in drug-resistant tumors owing to the multicausal nature of drug resistance. Therefore, a single agent with pleiotropic effects would be beneficial in combating this adversity. Withania somnifera exhibits multifunctional anticancer properties, but its role in overcoming chemoresistance remains poorly understood. We evaluated the cytotoxic effect of AshwamaxTM-W. somnifera (WS)-extract and Withaferin A (WFA), in intrinsically resistant (KATO-III and SKOV3) and acquired chemoresistant gastric (AGS5FU) and ovarian (A2780LR) cancer cellular models. We examined their impact on autophagy and apoptosis pathways and elucidated the underlying molecular mechanism. In vivo efficacy of WFA on cisplatin-paclitaxel-resistant epithelial ovarian cancer (EOC) xenografts was assessed using noninvasive optical imaging. Mechanistically, WFA is more proficient in targeting chemoresistant cells than AshwamaxTM-WS extract and activates apoptosis by overriding the AKT-NF-κB-STAT3-survivin axis. Preclinical imaging revealed dose-dependent tumor regression (during and after treatment) in platinum-taxol-resistant EOC xenografts that were unresponsive to cisplatin challenge. WFA, at 3 mg kg-1 dosage, reduced tumor volume by 4.7-fold compared to controls, with sustained antitumor effects persisting after treatment cessation. WFA effectively targets the AKT-NF-κB-STAT3-survivin axis to overcome single and multidrug resistance in gastric and epithelial ovarian cancers, presenting a promising therapeutic alternative for chemoresistant malignancies.

原发性化疗药物的耐药性是实体瘤治疗的一个重大挑战。由于耐药的多因果性,大多数二线化疗和靶向治疗对耐药肿瘤的作用一般或较差。因此,一种具有多效性的单一药剂将有利于对抗这种逆境。Withania somnifera显示出多功能抗癌特性,但其在克服化学耐药中的作用仍然知之甚少。我们评价了AshwamaxTM-W的细胞毒作用。somnifera (WS)提取物和Withaferin A (WFA)在内在耐药(KATO-III和SKOV3)和获得性化疗耐药胃(AGS5FU)和卵巢癌(A2780LR)细胞模型中的作用。我们研究了它们对自噬和凋亡途径的影响,并阐明了潜在的分子机制。采用无创光学成像技术评估WFA对顺铂-紫杉醇耐药上皮性卵巢癌(EOC)异种移植的体内疗效。在机制上,WFA比AshwamaxTM-WS提取物更擅长靶向化疗耐药细胞,并通过覆盖AKT-NF-κB-STAT3-survivin轴激活细胞凋亡。临床前影像学显示,对顺铂无反应的铂-紫杉醇耐药EOC异种移植物的肿瘤消退(治疗期间和治疗后)呈剂量依赖性。WFA在3mg kg-1剂量下,与对照组相比,肿瘤体积减少了4.7倍,在治疗停止后持续的抗肿瘤作用持续存在。WFA有效靶向AKT-NF-κB-STAT3-survivin轴,克服胃癌和上皮性卵巢癌的单药和多药耐药,为化疗耐药恶性肿瘤提供了一种有希望的治疗选择。
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引用次数: 0
Inhibiting Cyclin-Dependent Kinase 13-Mediated Nuclear Ubiquitous Casein Kinase and Cyclin-Dependent Kinase Substrate 1 Phosphorylation Facilitates Oxidative Stress-Induced Apoptosis in Melanoma. 抑制周期蛋白依赖性激酶13介导的核泛在酪蛋白激酶和周期蛋白依赖性激酶底物1磷酸化促进氧化应激诱导的黑色素瘤细胞凋亡。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-25 DOI: 10.1002/mc.70040
Zhaohai Pan, Heng Ge, Pan Jiang, Dan Shi, Zihui Yang, Xin Zhang, Jie Huang, Chao Liang, Jun Lu, Qi Xie, Qiusheng Zheng, Defang Li

Cellular responses after oxidative stress-induced deoxyribonucleic acid (DNA) damage (e.g., DNA double-strand break) control tumor cell proliferation, senescence, and apoptosis. The nuclear ubiquitous casein kinase and cyclin-dependent kinase substrate 1 (NUCKS1) ensures replication feasibility by modulating double-strand break repair necessary to regulate tumor cell proliferation. However, the regulatory mechanism of NUCKS1 in oxidative stress-induced melanoma cell apoptosis is not well characterized. In this study, we reported reduced phosphorylation of NUCKS1 during oxidative stress-mediated melanoma A375 and A875 cell apoptosis, and silencing of NUCKS1 obviously promoted A375 and A875 cell apoptosis. Mechanistically, cyclin-dependent kinase 13 (CDK13) was identified as a major upstream kinase to phosphorylate NUCKS1 and downregulated via ataxia telangiectasia mutated (ATM)/checkpoint kinase 2 (Chk2)/cell division cycle 25C (Cdc25C) axis during the process of oxidative stress-induced apoptosis. Moreover, we found that p-NUCKS1 could bind to tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein Zeta (YWHAZ) and subsequently regulate the level of BCL2-associated X (Bax), thereby leading to melanoma A375 and A875 cell apoptosis. Furthermore, we found that p-NUCKS1 was highly expressed in tumor specimens from melanoma patients, and silencing of NUCKS1 inhibited tumor growth in melanoma A375 and A875-bearing mouse models. Therefore, p-NUCKS1 could act as a potential target for melanoma treatment by mediating oxidative stress-induced apoptosis.

氧化应激诱导的脱氧核糖核酸(DNA)损伤(如DNA双链断裂)后的细胞反应控制着肿瘤细胞的增殖、衰老和凋亡。细胞核无所不在的酪蛋白激酶和周期蛋白依赖性激酶底物1 (NUCKS1)通过调节肿瘤细胞增殖所必需的双链断裂修复来确保复制的可行性。然而,NUCKS1在氧化应激诱导的黑色素瘤细胞凋亡中的调控机制尚不清楚。在本研究中,我们报道了在氧化应激介导的黑色素瘤A375和A875细胞凋亡过程中,NUCKS1的磷酸化降低,并且沉默NUCKS1明显促进了A375和A875细胞的凋亡。细胞周期蛋白依赖性激酶13 (cyclin-dependent kinase 13, CDK13)是介导NUCKS1磷酸化的主要上游激酶,在氧化应激诱导细胞凋亡过程中通过ataxia毛细血管扩张突变(ATM)/checkpoint kinase 2 (Chk2)/细胞分裂周期25C (Cdc25C)轴下调。此外,我们发现p-NUCKS1可以结合酪氨酸3-单加氧酶/色氨酸5-单加氧酶激活蛋白Zeta (YWHAZ),随后调节bcl2相关X (Bax)的水平,从而导致黑色素瘤A375和A875细胞凋亡。此外,我们发现p-NUCKS1在黑色素瘤患者的肿瘤标本中高表达,并且在黑色素瘤A375和a875小鼠模型中,沉默NUCKS1可抑制肿瘤生长。因此,p-NUCKS1可能通过介导氧化应激诱导的细胞凋亡而成为黑色素瘤治疗的潜在靶点。
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引用次数: 0
RETRACTION: Tumorigenic Study on Hepatocytes Coexpressing SV40 With Ras. 撤回:SV40与Ras共表达肝细胞的致瘤性研究。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-25 DOI: 10.1002/mc.70046

Retraction: B. Sun, M. Chen, C. Hawks, P. J. Hornsby, and X. Wang, "Tumorigenic Study on Hepatocytes Coexpressing SV40 With Ras," Molecular Carcinogenesis 45 no. 4 (2006): 213-219, https://doi.org/10.1002/mc.20137. The above article, published online on 19 September 2005 in Wiley Online Library (wileyonlinelibrary.com) has been retracted by agreement between the authors; the journal Editor-in-Chief; and Wiley Periodicals LLC. The authors identified a significant discrepancy between the legend of Figure 3 and its corresponding description in the Results section. Specifically, the figure legend cites the use of "HCA2 cells," whereas the Results section explicitly describes experiments conducted with "human hepatocyte lines HL-7702 and HL-7703." To resolve this discrepancy and validate the critical findings, the authors attempted to replicate the experiments using the original HL-7702/HL-7703 cell systems. However, two irremediable constraints precluded verification: First, the extended time interval of nearly two decades since publication had rendered the original biological materials nonviable due to natural degradation. Second, essential plasmid constructs required for experimental replication were permanently lost during multiple laboratory relocations over this period. Consequently, the core conclusions remain experimentally unverifiable. Given that the figure-result contradiction cannot be resolved through standard correction measures and considering the irretrievable inability to replicate the study's key outcomes, we conclude that the continued availability of this paper irreparably compromises the validity of the study's conclusions and risks perpetuating misleading information. Therefore, the article must be retracted.

引用本文:王晓霞,陈敏,王晓霞,王晓霞,“肝细胞共表达SV40和Ras的研究”,《中华肿瘤杂志》第45期。4 (2006): 213-219, https://doi.org/10.1002/mc.20137。上述文章于2005年9月19日在Wiley在线图书馆(wileyonlinelibrary.com)上发表,经作者同意撤回;期刊总编辑;和Wiley期刊有限责任公司。作者发现图3的图例与结果部分中相应的描述之间存在显著差异。具体来说,图例引用了“HCA2细胞”的使用,而结果部分明确描述了使用“人类肝细胞系HL-7702和HL-7703”进行的实验。为了解决这一差异并验证关键发现,作者试图使用原始的HL-7702/HL-7703细胞系统重复实验。然而,有两个无法弥补的限制阻碍了核查:第一,自发表以来近二十年的时间间隔使原始生物材料由于自然降解而无法生存。其次,在此期间的多次实验室搬迁中,实验复制所需的基本质粒结构永久丢失。因此,核心结论在实验上仍然无法验证。考虑到数据与结果的矛盾无法通过标准的纠正措施来解决,并考虑到不可挽回的无法复制研究的关键结果,我们得出结论,本文的持续可用性不可挽回地损害了研究结论的有效性,并有可能使误导性信息永久化。因此,这篇文章必须撤回。
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引用次数: 0
Helicobacter pylori Infection, Metabolomic Signature and Extra-gastric Cancer Risk: A Mediation and Mendelian Randomization Analysis. 幽门螺杆菌感染、代谢组学特征和胃癌外风险:一个中介和孟德尔随机化分析。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-10-07 DOI: 10.1002/mc.70050
Yan Chen, Yuhui Yu, Qiufen Sun, Xia Zhu, Lijun Bian, Qian Gao, Zhe Li, Xinxiang Gao, Qian Li, Jiaying Gu, Xin Fang, Yunfei Wang, Aiping Zhang, Dong Hang, Guangfu Jin, Caiwang Yan

Emerging evidence suggests that Helicobacter pylori (H. pylori) infection may contribute to extra-gastric malignancies, but the mechanisms are unclear. Using untargeted metabolomics data from two prospective Chinese cohorts, we constructed an H. pylori associated metabolomic signature in 1800 baseline participants and evaluated cancer risks using conditional logistic regression in 1:1 matched case-control studies for lung cancer (n = 352 pairs), colorectal cancer (CRC; n = 190 pairs), esophageal cancer (n = 146 pairs), and hepatocellular carcinoma (n = 163 pairs), with confounder adjustment and sex stratification. Mediation analysis was performed to evaluate the mediating effects of the metabolomic signature and specific plasma metabolites on the observed associations. Mendelian randomization (MR) analysis was conducted to evaluate causal relationships. H. pylori infection was significantly associated with an increased risk of CRC (OR = 1.80, 95% CI: 1.13-2.85), especially driven by males (OR = 3.01, 95% CI: 1.44-6.31), but not with other cancers. Additionally, the H. pylori infection-related metabolomic signature consisting of 26 metabolites (OR per standard deviation [SD] increment = 1.52, 95% CI: 1.03-2.25) and plasma metabolite methionine sulfone (OR per SD increment = 1.73, 95% CI: 1.16-2.58) were positively associated with CRC risk in males. Mediation analysis indicated partial mediation by the metabolomic signature (12.08%, 95% CI: 0.26-46.88%) and methionine sulfone (16.79%, 95% CI: 0.11-74.76%). MR analysis further supported a potentially causal association between methionine sulfone and CRC (OR = 1.08, 95% CI: 1.02-1.15). Collectively, these results implicate sex-specific metabolomic alterations, particularly involving methionine sulfone, in mediating the relationship between H. pylori infection and CRC risk in males. These insights advance understanding of CRC pathogenesis and may inform targeted prevention strategies.

新出现的证据表明幽门螺杆菌感染可能导致胃外恶性肿瘤,但其机制尚不清楚。使用来自两个前瞻性中国队列的非靶向代谢组学数据,我们在1800名基线参与者中构建了幽门螺杆菌相关的代谢组学特征,并在1:1匹配的病例对照研究中使用条件logistic回归评估了肺癌(n = 352对)、结直肠癌(n = 190对)、食管癌(n = 146对)和肝细胞癌(n = 163对)的癌症风险,并进行了混杂校正和性别分层。我们进行了中介分析,以评估代谢组学特征和特定血浆代谢物对观察到的关联的中介作用。采用孟德尔随机化(MR)分析评价因果关系。幽门螺杆菌感染与CRC风险增加显著相关(OR = 1.80, 95% CI: 1.13-2.85),尤其是男性(OR = 3.01, 95% CI: 1.44-6.31),但与其他癌症无关。此外,由26种代谢物组成的幽门螺杆菌感染相关代谢组学特征(OR每标准差[SD]增量= 1.52,95% CI: 1.03-2.25)和血浆代谢物蛋氨酸砜(OR每SD增量= 1.73,95% CI: 1.16-2.58)与男性结直肠癌风险呈正相关。中介分析表明,代谢组学特征(12.08%,95% CI: 0.26-46.88%)和蛋氨酸砜(16.79%,95% CI: 0.11-74.76%)起到部分中介作用。MR分析进一步支持蛋氨酸砜与CRC之间的潜在因果关系(OR = 1.08, 95% CI: 1.02-1.15)。总的来说,这些结果暗示了性别特异性代谢组学改变,特别是涉及蛋氨酸砜,在调节男性幽门螺杆菌感染和结直肠癌风险之间的关系。这些见解促进了对结直肠癌发病机制的理解,并可能为有针对性的预防策略提供信息。
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引用次数: 0
SSR4 Promote Gastric Cancer Progression by Regulating Mitochondrial Oxidative Phosphorylation via NDUFB11 and ATP6AP1. SSR4通过NDUFB11和ATP6AP1调控线粒体氧化磷酸化促进胃癌进展。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-25 DOI: 10.1002/mc.70047
Aoshuang Li, Baixue Liao, Kaiwen Wu, Ruiling Fan, Binjun Zhu, Xiaobin Sun, Lei Liu

Gastric cancer (GC) is one of the most common cancers worldwide. Cancer cell metastasis is a major factor leading to poor prognosis. Previous proteomic data suggested that SSR4 might be closely associated with the occurrence and development of GC. However, the role and molecular mechanism of SSR4 in GC is not yet clear. The present study found that the expression level of SSR4 was increased in GC tissue and serum from GC patients. In addition, SSR4 could promote the malignant biological behavior of GC cells in vitro and in vivo. The mechanism may be that SSR4 regulates the expression of NDUFB11 and ATP6AP1, and then enhanced the function of mitochondrial respiratory chain complex I (CI) and mitochondrial respiratory chain complex V (CV), which promoted the mitochondrial oxidative phosphorylation and thus promoted GC progression. These findings expand the understanding of the role of SSR4 and provide a new target for the treatment of GC.

胃癌(GC)是世界上最常见的癌症之一。癌细胞转移是导致预后不良的主要因素。以往的蛋白质组学研究表明,SSR4可能与胃癌的发生发展密切相关。然而,SSR4在GC中的作用和分子机制尚不清楚。本研究发现,在胃癌患者的GC组织和血清中,SSR4的表达水平升高。此外,SSR4在体外和体内均能促进GC细胞的恶性生物学行为。其机制可能是SSR4调控NDUFB11和ATP6AP1的表达,进而增强线粒体呼吸链复合体I (CI)和线粒体呼吸链复合体V (CV)的功能,从而促进线粒体氧化磷酸化,从而促进GC进展。这些发现扩大了对SSR4作用的认识,并为GC的治疗提供了新的靶点。
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引用次数: 0
An Integrative Drug-Induced Transcriptomic Analysis Identifies Novel MYC Antagonists and Potential Synergistic Drug Combinations. 一项综合药物诱导转录组学分析确定了新的MYC拮抗剂和潜在的协同药物组合。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-30 DOI: 10.1002/mc.70044
Anthony Aceto, Yue Wang, Da Yang

MYC is among the most frequently dysregulated oncogenes in human cancer, yet its direct targeting remains a significant challenge. Here, we present an in-silico integrative screening approach to identify compounds and combinations that can block MYC's oncogenic function by specifically disrupting its transcriptional regulatory function. Using a doxycycline (DOX)-inducible model, we established a MYC loss-of-function (LOF) gene signature that specifically captures the molecular consequences corresponding to the loss of MYC's ability in transcriptional regulation. By integrating large-scale post-perturbation transcriptomic profiling from the CMAP database, we screened over 8300 drug-induced profiles and identified 70 recurrent compounds that are predicted to antagonize MYC's transcriptional programs. To further enhance their therapeutic potential, we also developed an orthogonality analysis to pinpoint synergistic drug combinations that suppress MYC activity more effectively than single agents. Our scalable framework enables a rational and systematic identification of compounds with potential to antagonize MYC's oncogenic function by disrupting its transcriptional regulatory ability without necessarily decreasing its abundance. Our approach provides new insights on utilizing existing anticancer drugs to indirectly target MYC in MYC-driven cancer.

MYC是人类癌症中最常见的失调癌基因之一,但其直接靶向仍然是一个重大挑战。在这里,我们提出了一种计算机综合筛选方法,以鉴定可以通过特异性破坏MYC的转录调节功能来阻断其致癌功能的化合物和组合。使用强力霉素(DOX)诱导的模型,我们建立了MYC功能丧失(LOF)基因标记,特异性捕获MYC转录调节能力丧失相应的分子后果。通过整合来自CMAP数据库的大规模扰动后转录组分析,我们筛选了超过8300种药物诱导的谱,并确定了70种预测可拮抗MYC转录程序的复发性化合物。为了进一步提高其治疗潜力,我们还开发了正交分析,以确定协同药物组合比单一药物更有效地抑制MYC活性。我们的可扩展框架能够通过破坏MYC的转录调控能力而不必降低其丰度,从而合理和系统地识别具有拮抗MYC致癌功能的化合物。我们的方法为利用现有的抗癌药物间接靶向MYC驱动的癌症提供了新的见解。
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引用次数: 0
POU4F1 Promotes the Primary Resistance of Melanoma to Anti-PD-1 Therapy by Regulating Glycolysis Through METTL1-Mediated m7G Methylation of PKM2. POU4F1通过mettl1介导的PKM2的m7G甲基化调节糖酵解,促进黑色素瘤对抗pd -1治疗的原发性抵抗。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-30 DOI: 10.1002/mc.70049
Lin Liu, Xiaokang Li, Xinhong Hu, Da Zhai, Tianyu Cao, Ling Liu

Melanoma, a highly malignant tumor originating from melanocytes, has seen a significant increase in global incidence, particularly among the elderly. Anti-PD-1 monoclonal antibodies, which activate the immune system to attack cancer cells by blocking the PD-1/PD-L1 signaling pathway, have improved survival rates but face challenges such as innate resistance. This study enrolls 37 melanoma patients and 7 benign nevus patients, with tissue samples collected for analysis. RT-qPCR and Western blot are used to quantify the expression of the target protein. Flow cytometry is utilized to analyze immune subsets in tumors. Glucose uptake, lactate production, and ATP level are assessed by commercial kits. Extracellular acidification rate (ECAR) and oxygen consumption rate (OCR) are measured using a Seahorse XF Analyzer. RNA Bisulfite Sequencing is performed to quantify pyruvate kinase M2 (PKM2) m7G methylation level, MeRIP-qPCR is conducted to validate the m7G methylation level of PKM2, and RIP assay is conducted to confirm POU4F1-METTL1 interaction. The results show that POU Class 4 Homeobox 1 (POU4F1) is upregulated in melanoma tissues compared to benign nevi. Anti-PD-1 treatment effectively reduces POU4F1 expression in sensitive B16-F10-M tumors and has no significant effect on resistant B16-F10-R tumors. POU4F1 overexpression induces profound metabolic alterations, including increased lactate production, glucose uptake, and ECAR, while suppressing OCR in B16-F10-M cells. POU4F1 overexpression also reduces the infiltration of CD8+ T cells, M1-macrophages, and NK cells, while increasing Treg and M2-macrophage populations in B16-F10-M cells. Importantly, 3-Bromopyruvate (a glycolysis inhibitor) reverses these effects. Mechanistically, POU4F1 upregulates METTL1 expression and increases m7G methylation of PKM2 mRNA. Besides, there is an interaction between POU4F1 and METTL1. METTL1 is also overexpressed in melanoma tissues compared to benign nevi. In conclusion, POU4F1 drives anti-PD-1 resistance in melanoma by enhancing glycolysis via METTL1-mediated m7G methylation of PKM2. Targeting the POU4F1-METTL1-PKM2 axis may improve melanoma immunotherapy outcomes.

黑色素瘤是一种起源于黑色素细胞的高度恶性肿瘤,其全球发病率显著增加,尤其是在老年人中。抗PD-1单克隆抗体通过阻断PD-1/PD-L1信号通路,激活免疫系统攻击癌细胞,提高了生存率,但面临先天耐药等挑战。本研究招募了37例黑色素瘤患者和7例良性痣患者,收集组织样本进行分析。采用RT-qPCR和Western blot方法定量表达目标蛋白。流式细胞术被用于分析肿瘤中的免疫亚群。葡萄糖摄取、乳酸生成和ATP水平用商用试剂盒评估。使用Seahorse XF分析仪测量细胞外酸化速率(ECAR)和耗氧量(OCR)。采用RNA亚硫酸盐测序法定量丙酮酸激酶M2 (PKM2) m7G甲基化水平,采用MeRIP-qPCR法验证PKM2 m7G甲基化水平,采用RIP法确认POU4F1-METTL1相互作用。结果显示,与良性痣相比,POU Class 4 Homeobox 1 (POU4F1)在黑色素瘤组织中表达上调。抗pd -1治疗可有效降低敏感B16-F10-M肿瘤中POU4F1的表达,对耐药B16-F10-R肿瘤无显著影响。在B16-F10-M细胞中,POU4F1过表达诱导了深刻的代谢改变,包括乳酸生成、葡萄糖摄取和ECAR的增加,同时抑制了OCR。POU4F1过表达还能减少CD8+ T细胞、m1 -巨噬细胞和NK细胞的浸润,同时增加B16-F10-M细胞中Treg和m2 -巨噬细胞的数量。重要的是,3-溴丙酮酸(一种糖酵解抑制剂)可以逆转这些作用。在机制上,POU4F1上调METTL1的表达,增加PKM2 mRNA的m7G甲基化。此外,POU4F1与METTL1之间存在相互作用。与良性痣相比,METTL1在黑色素瘤组织中也过表达。总之,POU4F1通过mettl1介导的PKM2的m7G甲基化促进糖酵解,从而驱动黑色素瘤的抗pd -1耐药性。靶向POU4F1-METTL1-PKM2轴可能改善黑色素瘤免疫治疗结果。
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引用次数: 0
Screening and Validation of Genes Associated With Lysosomal-Dependent Cell Death in Colorectal Cancer. 结直肠癌溶酶体依赖性细胞死亡相关基因的筛选和验证。
IF 3.2 2区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-09-18 DOI: 10.1002/mc.70024
Jianbin Zhuang, Chengquan Ma, Mingjian Yang, Weiliang Song

This study investigates the correlation between CRC and lysosomal-dependent cell death (LDCD) to identify potential therapeutic targets and prognostic indicators. Utilizing CRC datasets (TCGA-CRC) and GSE17538, differentially expressed genes and LDCD-related genes (LDCDRGs) were analyzed to identify candidate genes. A risk model was constructed using Cox regression analysis, proportional hazards test and least absolute shrinkage and selection operator analysis. Independent prognostic factors were determined through Cox analysis (univariate and multivariate). Additionally, nomogram establishment, enrichment analysis, tumor immune microenvironment analysis, sensitivity analysis of chemotherapeutic drugs and single-cell sequencing analysis were conducted. Furthermore, prognostic gene expression in CRC and normal groups was further evaluated in TCGA-CRC as well as in clinical samples. A total of 37 candidate genes were identified. ATP6V0A4, CLU and IL13RA2 were selected for constructing a risk model. The risk model, incorporating independent prognostic parameters such as risk score, age and pathological T stage, exhibited favorable diagnostic performance for CRC. Tumor immune microenvironment analysis showed higher dysfunction, exclusion, and tumor immune dysfunction and exclusion scores in the high-risk group compared to the low-risk group. Significant differences were observed in the 50% inhibitory concentration of 84 drugs between the two risk subgroups. ENCs and myeloid cells were regarded as key cells. Importantly, IL13RA2 exhibited higher expression in patients with CRC, while CLU was more highly expressed in normal samples. This study identified ATP6V0A4, CLU and IL13RA2 as potential biomarkers associated with lysosome-mediated cell death in CRC, providing insights for diagnosis and treatment.

本研究探讨了结直肠癌与溶酶体依赖性细胞死亡(LDCD)的相关性,以确定潜在的治疗靶点和预后指标。利用CRC数据集(TCGA-CRC)和GSE17538,分析差异表达基因和lcdd相关基因(LDCDRGs),确定候选基因。采用Cox回归分析、比例风险检验、最小绝对收缩和选择算子分析构建风险模型。通过Cox分析(单因素和多因素)确定独立预后因素。此外,还进行了nomogram建立、富集分析、肿瘤免疫微环境分析、化疗药物敏感性分析和单细胞测序分析。此外,在TCGA-CRC和临床样本中进一步评估CRC和正常组的预后基因表达。共鉴定出37个候选基因。选取ATP6V0A4、CLU和IL13RA2构建风险模型。纳入独立预后参数(如风险评分、年龄和病理T分期)的风险模型对结直肠癌具有良好的诊断效果。肿瘤免疫微环境分析显示,与低危组相比,高危组的功能障碍、排斥、肿瘤免疫功能障碍和排斥评分更高。84种药物的50%抑制浓度在两个危险亚组之间有显著差异。ENCs和髓样细胞被认为是关键细胞。重要的是,IL13RA2在CRC患者中表达更高,而CLU在正常样本中表达更高。本研究发现ATP6V0A4、CLU和IL13RA2是与CRC溶酶体介导的细胞死亡相关的潜在生物标志物,为CRC的诊断和治疗提供了新的见解。
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引用次数: 0
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Molecular Carcinogenesis
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