Objective: The aim of this study is to compare the C. gibelio species living in Atatürk Dam Lake with the sequences in the gene bank based on the sequences of the mtDNA COI and Cyt b gene regions and to perform phylogenetic analyzes. Material and Methods: Individuals of the target species living in the Bozova region of Atatürk Dam Lake were randomly selected from fishermen and purchased. Total DNA isolation was performed from muscle tissue using the GeneJET Genomic DNA Purification Kit (Thermo Scientific) according to the protocol instructions. Then, using specific primers of mtDNA COI and Cyt-b regions, the relevant regions were amplified by PCR method. The obtained PCR products were carried out in Agarose gel and the samples forming the product were selected and sent to the commercial firm as service procurement and sequence analysis was performed with the 3500 XL Genetic Analyzer device. Results: Sequences of 620 and 580 bp in length were obtained for the mtDNA COI and cyt b gene regions, respectively. Although the same haplotype was detected for the mtDNA COI region with individuals living in Turkey before, a new haplotype was detected for the mtDNA cyt b gene region that was not previously defined. Conclusion: Sequence analyzes of mtDNA COI and cyt b gene regions of individuals belonging to the C. gibelio species living in Atatürk Dam Lake were performed for the first time in this study and compared with the data in the gene bank.
{"title":"Atatürk Baraj Gölü’nde (Türkiye) Yaşayan Carassius gibelio (Bloch, 1782) türünün mtDNA COI ve cyt b Analizi","authors":"Arif Parmaksiz, A. Demir","doi":"10.26650/tjbc.1112782","DOIUrl":"https://doi.org/10.26650/tjbc.1112782","url":null,"abstract":"Objective: The aim of this study is to compare the C. gibelio species living in Atatürk Dam Lake with the sequences in the gene bank based on the sequences of the mtDNA COI and Cyt b gene regions and to perform phylogenetic analyzes. Material and Methods: Individuals of the target species living in the Bozova region of Atatürk Dam Lake were randomly selected from fishermen and purchased. Total DNA isolation was performed from muscle tissue using the GeneJET Genomic DNA Purification Kit (Thermo Scientific) according to the protocol instructions. Then, using specific primers of mtDNA COI and Cyt-b regions, the relevant regions were amplified by PCR method. The obtained PCR products were carried out in Agarose gel and the samples forming the product were selected and sent to the commercial firm as service procurement and sequence analysis was performed with the 3500 XL Genetic Analyzer device. Results: Sequences of 620 and 580 bp in length were obtained for the mtDNA COI and cyt b gene regions, respectively. Although the same haplotype was detected for the mtDNA COI region with individuals living in Turkey before, a new haplotype was detected for the mtDNA cyt b gene region that was not previously defined. Conclusion: Sequence analyzes of mtDNA COI and cyt b gene regions of individuals belonging to the C. gibelio species living in Atatürk Dam Lake were performed for the first time in this study and compared with the data in the gene bank.","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"16 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124969533","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Length-Weight Relationship, Condition Factor, and Gonadosomatic Index of Endemic Alburnus istanbulensis (Battalgil, 1941) in Two Different Habitats: Karamenderes River and Bayramiç Reservoir (Çanakkale, Turkey)","authors":"N. Partal, Şükran Yalçın Özdilek","doi":"10.26650/tjbc.1161865","DOIUrl":"https://doi.org/10.26650/tjbc.1161865","url":null,"abstract":"","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"22 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123877247","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"New Record of the Pelagic Octopods Argonauta argo (Linnaeus, 1758) off the Shore of the Northern Tip of the Gulf of Aqaba in Jordan","authors":"Ehab Eid, S. Damhoureyeh","doi":"10.26650/tjbc.1097163","DOIUrl":"https://doi.org/10.26650/tjbc.1097163","url":null,"abstract":"","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125435652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Contribution to the Distribution of Rhynchocalamus melanocephalus (Jan, 1862) in Turkey","authors":"U. Bülbül","doi":"10.26650/tjbc.1084143","DOIUrl":"https://doi.org/10.26650/tjbc.1084143","url":null,"abstract":"","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126710560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-05DOI: 10.26650/tjbc.20221082587
Şükran Yalçın Özdilek, N. Partal
{"title":"Length-weight relationships and condition factors of three fish species in the Karamenderes Stream (Çanakkale, Türkiye)","authors":"Şükran Yalçın Özdilek, N. Partal","doi":"10.26650/tjbc.20221082587","DOIUrl":"https://doi.org/10.26650/tjbc.20221082587","url":null,"abstract":"","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"2 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125022532","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-04DOI: 10.26650/tjbc.20221084791
S. Ağdamar, Ümit Acar
{"title":"New record and rare occurrence of European eel (Anguilla anguilla) from freshwater bodies in Karaburun Peninsula (İzmir, Türkiye): Anthropogenic pressures on the fish movements","authors":"S. Ağdamar, Ümit Acar","doi":"10.26650/tjbc.20221084791","DOIUrl":"https://doi.org/10.26650/tjbc.20221084791","url":null,"abstract":"","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"49 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126862202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-03DOI: 10.26650/tjbc.20221017242
Songül Biçer, D. Odabaşı, Buğra Öztürk
{"title":"The Catalog of Aquatic Mollusca (Bivalvia and Gastropoda) in the Limnology Museum of Çanakkale Onsekiz Mart University (COMULM)","authors":"Songül Biçer, D. Odabaşı, Buğra Öztürk","doi":"10.26650/tjbc.20221017242","DOIUrl":"https://doi.org/10.26650/tjbc.20221017242","url":null,"abstract":"","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"90 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134271302","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-03DOI: 10.26650/tjbc.20221013455
Arif Parmaksiz, Necati Eneş, Kadir Eği, İsmail Koyuncu
Objective: In this study, data on the amino acid profile of the muscle tissue consumed as food of C. gibelio , an invasive fish living in the Euphrates and Tigris River systems, were obtained. Material and Methods: Muscle tissue samples used for analysis were taken from fish caught and sold with the help of nets by local fishermen. The amino acid profile analysis of the muscle tissue taken as 100 mg/ml from each fish, 29 individuals in total, was made in the LC-MS/MS 8045 device and Jasem LC-MS/MS amino acid analysis kit was used. The results were analyzed and evaluated for the absorbance values obtained from the results of this device. Results: The lowest and highest values and amino acids detected in the fish muscles at a rate of 100 mg/ml of the Euphrates and Tigris groups, respectively; Carnosine with 0.241, Lysine with 668.176 for the Tigris group; For the Euphrates group, it is 3_MHIS with 0.445 and Valin with 9192.287. Conclusion: As a result of this study, an important data set for protein diet was obtained by revealing the amino acid profile of the C. gibelio species living in the Euphrates and Tigris River systems.
{"title":"Fırat ve Dicle Nehirlerinde Yaşayan Carassius gibelio (Bloch, 1782) Türünün Aminoasit Profilinin Araştırılması","authors":"Arif Parmaksiz, Necati Eneş, Kadir Eği, İsmail Koyuncu","doi":"10.26650/tjbc.20221013455","DOIUrl":"https://doi.org/10.26650/tjbc.20221013455","url":null,"abstract":"Objective: In this study, data on the amino acid profile of the muscle tissue consumed as food of C. gibelio , an invasive fish living in the Euphrates and Tigris River systems, were obtained. Material and Methods: Muscle tissue samples used for analysis were taken from fish caught and sold with the help of nets by local fishermen. The amino acid profile analysis of the muscle tissue taken as 100 mg/ml from each fish, 29 individuals in total, was made in the LC-MS/MS 8045 device and Jasem LC-MS/MS amino acid analysis kit was used. The results were analyzed and evaluated for the absorbance values obtained from the results of this device. Results: The lowest and highest values and amino acids detected in the fish muscles at a rate of 100 mg/ml of the Euphrates and Tigris groups, respectively; Carnosine with 0.241, Lysine with 668.176 for the Tigris group; For the Euphrates group, it is 3_MHIS with 0.445 and Valin with 9192.287. Conclusion: As a result of this study, an important data set for protein diet was obtained by revealing the amino acid profile of the C. gibelio species living in the Euphrates and Tigris River systems.","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"12 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125027140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-03DOI: 10.26650/tjbc.2022987421
Nur Bikem Kesici, C. Dalyan, Onur Gönülal
{"title":"The New Maximum Length and Depth of Lagocephalus guentheri Miranda Ribeiro, 1915 in the Mediterranean Sea","authors":"Nur Bikem Kesici, C. Dalyan, Onur Gönülal","doi":"10.26650/tjbc.2022987421","DOIUrl":"https://doi.org/10.26650/tjbc.2022987421","url":null,"abstract":"","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"56 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2022-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132598144","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-09-24DOI: 10.26650/tjbc.2021984242
A. Tarkan
Objective: A freshwater jellyfish Craspedacusta sowerbii is frequently found in disturbed or artificial bodies of water, e.g. quarry ponds and gravel pits, reservoirs, aquaria and even wastewater treatment facilities, it can also thrive in natural lentic and lotic habitats. In the present study, we present two new records for C. sowerbii which is non-native to Turkey and provide the distribution data of the species in Turkey and Europe. Materials and Methods: The jellyfish samples were obtained from two localities by fishing nets and hand net. Temperature, pH and dissolved oxygen values of the two sampling areas were measured in both of the sampling areas. Results: Non-native freshwater jellyfish Craspedacusta sowerbii is recorded from two different localities namely Akdegirmen Reservoir (Afyon) and Atabey Reservoir (Isparta) in Turkey. Twelve individuals and two individuals of C. sowerbii were sampled in Akdegirmen Reservoir (Afyon) and Atabey Reservoir (Isparta), respectively. Temperature, pH and dissolved oxygen values of the two sampling areas were 18.7oC, 7.9, 6.34 mg/l in Akdegirmen Reservoir, and 10.9oC, 7.94, 9.36 mg/l in Atabey Reservoir. Conclusion: Many studies suggested that it could tolerate a wide range of temperatures from 10°C to 28°C and spread by fish stocking activities as well as by migratory birds in Turkey. It may have been possible for Craspedacusta sowerbii to be introduced to Akdegirmen Reservoir where there are many actively moving cormorants colonies. Also, spread of this species may have been facilitated by fish stocking activities in Turkish inland waters.
{"title":"Invasive freshwater jellyfish has become established in artificial impoundments of Anatolian Peninsula","authors":"A. Tarkan","doi":"10.26650/tjbc.2021984242","DOIUrl":"https://doi.org/10.26650/tjbc.2021984242","url":null,"abstract":"Objective: A freshwater jellyfish Craspedacusta sowerbii is frequently found in disturbed or artificial bodies of water, e.g. quarry ponds and gravel pits, reservoirs, aquaria and even wastewater treatment facilities, it can also thrive in natural lentic and lotic habitats. In the present study, we present two new records for C. sowerbii which is non-native to Turkey and provide the distribution data of the species in Turkey and Europe. Materials and Methods: The jellyfish samples were obtained from two localities by fishing nets and hand net. Temperature, pH and dissolved oxygen values of the two sampling areas were measured in both of the sampling areas. Results: Non-native freshwater jellyfish Craspedacusta sowerbii is recorded from two different localities namely Akdegirmen Reservoir (Afyon) and Atabey Reservoir (Isparta) in Turkey. Twelve individuals and two individuals of C. sowerbii were sampled in Akdegirmen Reservoir (Afyon) and Atabey Reservoir (Isparta), respectively. Temperature, pH and dissolved oxygen values of the two sampling areas were 18.7oC, 7.9, 6.34 mg/l in Akdegirmen Reservoir, and 10.9oC, 7.94, 9.36 mg/l in Atabey Reservoir. Conclusion: Many studies suggested that it could tolerate a wide range of temperatures from 10°C to 28°C and spread by fish stocking activities as well as by migratory birds in Turkey. It may have been possible for Craspedacusta sowerbii to be introduced to Akdegirmen Reservoir where there are many actively moving cormorants colonies. Also, spread of this species may have been facilitated by fish stocking activities in Turkish inland waters.","PeriodicalId":190602,"journal":{"name":"Turkish Journal of Bioscience and Collections","volume":"47 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127490799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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