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Nihon saikingaku zasshi. Japanese journal of bacteriology最新文献

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[Diversity in genome and epigenome of Helicobacter pylori]. [幽门螺杆菌基因组和表观基因组多样性]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.383
Y. Furuta
Helicobacter pylori infects human stomach and cause various gastric diseases including gastric cancer. The species is also known for rapid evolution and wide geographical diversity of genome sequence. Our team sequenced whole genome sequences of H. pylori strains isolated from Japanese patients and compared with whole genome sequences of H. pylori strains with other geographic origin and found that not only the gene repertoire but also genome structures and epigenetic modifications such as DNA methylations had large diversity with various mechanisms. Genome inversion events were geography specific and some of them were found to occur with gene duplication at their termini. DNA methylation states of H. pylori genomes suggested that they are diversified by both existence/absence repertoire of methyltransferase genes and by the movement of target recognition domain in the methyltransferase genes. Omics analysis revealed that methylation target sequence and transcriptome status are actually diversified by the domain sequence movement. We suggested that H. pylori utilizes these genome structure and methylome diversity for its adaptive evolution.
幽门螺杆菌感染人的胃,引起包括胃癌在内的各种胃疾病。该物种还以快速进化和广泛的基因组序列地理多样性而闻名。本团队对日本患者幽门螺杆菌分离株的全基因组序列进行了测序,并与其他地理来源的幽门螺杆菌菌株的全基因组序列进行了比较,发现不仅基因库,而且基因组结构和DNA甲基化等表观遗传修饰具有很大的多样性,其机制多种多样。基因组倒置事件具有地理特异性,其中一些在其末端发生基因复制。幽门螺杆菌基因组的DNA甲基化状态表明,甲基转移酶基因库的存在和缺失以及甲基转移酶基因中靶识别结构域的移动使它们的DNA甲基化状态多样化。组学分析表明,甲基化靶序列和转录组状态实际上是通过结构域序列的移动而多样化的。我们认为幽门螺杆菌利用这些基因组结构和甲基组多样性进行适应性进化。
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引用次数: 1
[Recent advances in the field of oral bacteriology]. 口腔细菌学研究进展
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.333
Mikio Shoji, Toru Takeshita, Fumito Maruyama, Hiroaki Inaba, Kenichi Imai, Miki Kawada-Matsuo

The oral cavity is inhabited by more than 600 bacterial species; these species compete for nutrients or coexist in order to survive along with the indigenous population. Extreme conditions are prevalent in the oral cavity, and these conditions are influenced by our immunity and variations in nutrition, temperature, and pH. Pathogens that cause dental caries or periodontal disease can survive in these extreme environments; these pathogens are virulent and can cause several diseases. Therefore, research on oral bacteriology is warranted to analyze the virulence factors of these bacteria as well as to ascertain environmental stress responses, interactions between bacteria and human immunity, comparisons of bacterial genomes, and oral microflora. In this review, we provide new data in the fields of bacteriology, immunology, and genomics and describe recent advances in the field of oral bacteriology.

口腔内有600多种细菌;这些物种为了与土著种群一起生存而争夺营养或共存。口腔内的极端情况非常普遍,这些情况受到我们的免疫力以及营养、温度和ph值变化的影响。导致龋齿或牙周病的病原体可以在这些极端环境中生存;这些病原体是剧毒的,可以引起几种疾病。因此,口腔细菌学研究有必要分析这些细菌的毒力因素,并确定环境应激反应、细菌与人体免疫的相互作用、细菌基因组的比较和口腔微生物群。本文综述了口腔细菌学、免疫学、基因组学等领域的最新研究成果,并介绍了口腔细菌学研究的最新进展。
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引用次数: 3
[Host defense and oxidative stress signaling in bacterial infection
]. [细菌感染中的宿主防御和氧化应激信号
]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.339
Takaaki Akaike

Nitric oxide (NO) and reactive oxygen species (ROS) produced during infection are involved critically in host defense mechanisms. It is quite important to physiologically regulate ROS, such as superoxide, and NO. These reactive species produced in excess may cause oxidative damage of biological molecules. An important cytoprotective and antimicrobial function of NO and ROS is mediated by induction of heme oxygenase (HO)-1. The signaling mechanism of this HO-1 induction has remained unclear, however. We discovered in 2007 a unique second messenger, 8-nitroguanosine 3',5'-cyclic monophosphate (8-nitro-cGMP), that mediates electrophilic signal transduction during oxidative stress and other cellular redox signaling in general. 8-Nitro-cGMP is formed via guanine nitration with NO and ROS, and in fact, NO-dependent 8-nitro-cGMP formation and HO-1 induction were identified in Salmonella-infected mice. HO-1 induction was regulated solely by 8-nitro-cGMP formed in cells, and more important, its potent anti-apoptotic function was evident in such a Salmonella infection. 8-Nitro-cGMP has a potent cytoprotective function, of which signaling appears to be mediated via protein sulfhydryls to generate a post-translational modification called protein S-guanylation. 8-Nitro-cGMP specifically S-guanylates Keap1, a negative regulator of transcription factor Nrf2, which in turn up-regulates transcription of HO-1. Our recent study revealed that the autophagy might be involved in the 8-nitro-cGMP-dependent antimicrobial effect. The 8-nitro-cGMP signaling was also found to be regulated by reactive sulfur species that have superior antioxidant activity and unique signaling function. This review will discuss a new paradigm of the host defense that operates via formation of a unique cell signaling molecule, 8-nitro-cGMP, during microbial infections.

感染过程中产生的一氧化氮(NO)和活性氧(ROS)在宿主防御机制中起着关键作用。生理调节活性氧(ROS)如超氧化物(superoxide)和一氧化氮(NO)是非常重要的。这些活性物质的过量产生可能引起生物分子的氧化损伤。NO和ROS的重要细胞保护和抗菌功能是通过诱导血红素加氧酶(HO)-1介导的。然而,这种HO-1诱导的信号机制尚不清楚。我们在2007年发现了一个独特的第二信使,8-硝基鸟苷3',5'-环单磷酸(8-硝基- cgmp),它在氧化应激和其他细胞氧化还原信号传导过程中介导亲电信号转导。8-硝基cgmp是通过鸟嘌呤与NO和ROS的硝化作用形成的,事实上,在沙门氏菌感染小鼠中发现了NO依赖性的8-硝基cgmp形成和HO-1诱导。HO-1的诱导仅受细胞内形成的8-硝基- cgmp的调控,更重要的是,在这种沙门氏菌感染中,其强大的抗凋亡功能是显而易见的。8-硝基- cgmp具有强大的细胞保护功能,其信号传导似乎通过蛋白质巯基介导,产生翻译后修饰,称为蛋白质s -胍基化。8-硝基- cgmp特异性地s -鸟苷酸Keap1,转录因子Nrf2的负调节因子,反过来上调HO-1的转录。我们最近的研究表明,自噬可能参与了8-硝基cgmp依赖的抗菌作用。8-硝基- cgmp信号也被发现受到具有优越抗氧化活性和独特信号功能的活性硫物质的调控。这篇综述将讨论一种新的宿主防御模式,它通过在微生物感染过程中形成一种独特的细胞信号分子,8-硝基- cgmp。
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引用次数: 9
[Infectious diseases in Asia/International collaboration in bacterial infectious diseases]. [亚洲传染病/细菌传染病方面的国际合作]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.329
Mitsutoshi Senoh, Masatomo Morita

Proactive approaches to collect precise information are necessary to control infectious diseases in the whole world. A collaborative research for infectious diseases with institute or university of countries that infectious diseases occur is one of the good approaches. In this paper, we introduce collaborative researches on infectious diseases with Asian countries, such as Vietnam, Philippines, Thailand, and India.

主动收集准确信息的方法对于控制全世界的传染病是必要的。与传染病发生国家的研究所或大学进行传染病合作研究是一种很好的方法。本文介绍了中国与越南、菲律宾、泰国、印度等亚洲国家在传染病领域的合作研究。
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引用次数: 0
[Pathogenic factors of mycoplasma]. [支原体致病因素]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.369
Takashi Shimizu
Mycoplasmas are smallest organisms capable of self-replication and cause various diseases in human. Especially, Mycoplasma pneumoniae is known as an etiological agent of pneumonia. From 2010 to 2012, epidemics of M. pneumoniae infections were reported worldwide (e.g., in France, Israel, and Japan). In the diseases caused by mycoplasmas, strong inflammatory responses induced by mycoplasmas have been thought to be important. However, mycoplasmas lack of cell wall and do not possess inflammation-inducing endotoxin such as lipopolysaccharide (LPS). We purified inflammation-inducing factors from pathogenic mycoplasmas and identified that they were lipoproteins. Lipoproteins derived from mycoplasmas induced inflammatory responses through Toll-like receptor (TLR) 2. In addition, we demonstrated that cytadherent property of M. pneumoniae played an important role in induction of inflammatory responses. Cytadherent property of M. pneumoniae induced inflammatory responses through TLR2 independent pathway. TLR4, inflammasomes, and autophagy were involved in this TLR2 independent induction of inflammatory responses.
支原体是具有自我复制能力的最小生物,可引起人类多种疾病。特别是,肺炎支原体被认为是肺炎的病原。2010年至2012年,全球报告了肺炎支原体感染流行(如法国、以色列和日本)。在由支原体引起的疾病中,由支原体引起的强烈炎症反应被认为是重要的。然而,支原体缺乏细胞壁,不具有诱导炎症的内毒素,如脂多糖(LPS)。我们从致病性支原体中纯化了炎症诱导因子,并鉴定出它们是脂蛋白。来自支原体的脂蛋白通过toll样受体(TLR) 2诱导炎症反应。此外,我们证明了肺炎支原体的细胞粘附特性在诱导炎症反应中起重要作用。肺炎支原体通过TLR2非依赖性途径诱导炎症反应的细胞粘附特性。TLR4、炎性小体和自噬参与了这种不依赖TLR2的炎症反应诱导。
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引用次数: 16
[Mechanism of bacterial gliding motility]. [细菌滑行运动的机制]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.375
Daisuke Nakane
Bacteria have various way to move over solid surfaces, such as glass, agar, and host cell. These movements involve surface appendages including flagella, type IV pili and other "mysterious" nano-machineries. Gliding motility was a term used various surface movements by several mechanisms that have not been well understood in past few decades. However, development of visualization techniques allowed us to make much progress on their dynamics of machineries. It also provided us better understanding how bacteria move over surfaces and why bacteria move in natural environments. In this review, I will introduce recent studies on the gliding motility of Flavobacteium and Mycoplasma based on the detail observation of single cell and its motility machinery with micro-nano scales.
细菌有各种各样的方式在固体表面上移动,如玻璃、琼脂和宿主细胞。这些运动涉及表面附属物,包括鞭毛、IV型毛和其他“神秘的”纳米机械。滑翔运动是一个术语,用于各种表面运动的几种机制,在过去的几十年里还没有很好地理解。然而,可视化技术的发展使我们在机械动力学方面取得了很大进展。它还让我们更好地了解细菌是如何在表面上移动的,以及细菌为什么在自然环境中移动。本文将从单细胞及其运动机制的微纳尺度上详细观察黄杆菌和支原体的滑行运动的最新研究进展作一综述。
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引用次数: 2
[Studies on the regulatory mechanism of Staphylococcus aureus virulence]. 【金黄色葡萄球菌毒力调控机制的研究】。
Pub Date : 2014-01-01 DOI: 10.3412/jsb.69.491
Chikara Kaito
Staphylococcus aureus causes various diseases against humans, including skin infection, pneumonia, food poisoning, and meningitis. Methicillin-resistant S. aureus (MRSA) is resistant to a broad range of antibiotics, causing serious clinical problems. In this review, I summarize our studies to evaluate S. aureus virulence and identify novel virulence regulators. First, we utilized silkworms as an infection model of S. aureus and identified novel virulence factors of S. aureus. Some of the virulence factors interact with RNA in bacterial cells and regulate the expression of virulence factors. Second, we found that S. aureus cells spread on soft agar plates and form a giant colony. We call this phenomenon colony-spreading. High virulence community-acquired MRSA exhibits higher colony-spreading activity than hospital-associated MRSA. The difference in colony spreading is attributed to a specific gene in the mobile genetic element SCCmec carried by hospital-associated MRSA. The gene transcription product inhibits translation of a master regulator against S. aureus virulence genes, resulting in the attenuation of colony-spreading, exotoxin production, and animal killing ability.
金黄色葡萄球菌可引起多种人体疾病,包括皮肤感染、肺炎、食物中毒和脑膜炎。耐甲氧西林金黄色葡萄球菌(MRSA)对多种抗生素具有耐药性,导致严重的临床问题。在这篇综述中,我总结了我们的研究评估金黄色葡萄球菌的毒力和鉴定新的毒力调节剂。首先,利用家蚕作为金黄色葡萄球菌的感染模型,鉴定出新的金黄色葡萄球菌毒力因子。一些毒力因子与细菌细胞中的RNA相互作用,调控毒力因子的表达。其次,我们发现金黄色葡萄球菌细胞在软琼脂板上扩散并形成一个巨大的菌落。我们称这种现象为蜂群扩散。高毒力社区获得性MRSA比医院相关性MRSA表现出更高的菌落传播活性。菌落扩散的差异归因于医院相关MRSA携带的可移动遗传元件SCCmec中的特定基因。该基因转录产物抑制了金黄色葡萄球菌毒力基因的主调控因子的翻译,导致菌落扩散、外毒素产生和动物杀伤能力的衰减。
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引用次数: 1
[Host-pathogen interaction of Legionella pneumophila]. [嗜肺军团菌的宿主-病原体相互作用]。
Pub Date : 2014-01-01 DOI: 10.3412/jsb.69.503
Hiroki Nagai

Legionella are gram-negative bacteria ubiquitously found in freshwater and soil environments. Once inhaled by humans, Legionella infection could result in a severe form of pneumonia known as Legionellosis. Legionella translocate ~300 effector proteins into host cells via the Dot/Icm type IV secretion system, which is central to Legionella pathogenesis. Here I describe a brief review on recent advances in research on the molecular basis of Legionella-eukaryotic-cell interaction.

军团菌是在淡水和土壤环境中普遍存在的革兰氏阴性细菌。一旦被人类吸入,军团菌感染可能导致一种被称为军团菌病的严重肺炎。军团菌通过Dot/Icm IV型分泌系统将约300种效应蛋白转运到宿主细胞中,这是军团菌发病的核心。本文就军团菌与真核细胞相互作用的分子基础的最新研究进展作一综述。
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引用次数: 0
[Morphology and motility of the spirochetes]. [螺旋体的形态和运动]。
Pub Date : 2014-01-01 DOI: 10.3412/jsb.69.527
Shuichi Nakamura

Spirochetes have flagella within the cell body and swim by wriggling the spiral cell body. Besides they have been known to be critical agents causing various infectious diseases, their eccentric appearances and motilities have been attracting many scientists in a wide variety of fields other than bacteriologists. Unlike externally flagellated bacteria that swim by using flagella as a screw propeller, spirochetes progress in a liquid by changing their cell shapes. To understand the unique motion mechanism of spirochetes, many experiments and theoretical studies are being carried out. In this review, I will summarize morphological and motile properties of various species of spirochete, such as Borrelia, Treponema and Brachyspira. I will also expound on the motion mechanism of Leptospira with our latest results obtained by high-resolution optical photometry.

螺旋体在细胞体内有鞭毛,通过扭动螺旋状细胞体游动。除了已知它们是引起各种传染病的关键因素外,它们古怪的外观和运动已经吸引了除细菌学家以外的许多其他领域的科学家。与利用鞭毛作为螺旋桨游动的外部鞭毛细菌不同,螺旋体通过改变细胞形状在液体中前进。为了了解螺旋体独特的运动机制,人们进行了大量的实验和理论研究。本文综述了疏螺旋体、密螺旋体和短螺旋体等不同种类螺旋体的形态和运动特性。我还将用高分辨率光学光度法获得的最新结果来阐述钩端螺旋体的运动机制。
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引用次数: 0
[Regulation of determination of bacterial shape]. [细菌形状测定规则]。
Pub Date : 2014-01-01 DOI: 10.3412/jsb.69.557
Daisuke Shiomi

Bacteria show various cell shape such as round, rod, helical, and so on. However, each bacterium has its own shape and their length and width are kept in a narrow range in a population. Abnormal cell shape often results in death of the cells. Therefore, it is important to maintain their shape. Rod-shaped bacterium Escherichia coli needs to regulate cell polarity, length and width in order to form rod shape. Bacterial shape is genetically regulated. Especially, MreB, a bacterial actin, and its interacting proteins are involved in the regulation. We have identified rodZ as a novel cell shape determinant and have been analyzing RodZ protein in the past few years. The rodZ mutant is round. We isolated suppressor mutants of the rodZ mutant. The shape of the suppressors was rod shape. By analyzing the rodZ mutant and the suppressors, we concluded that RodZ helps assembly of MreB filaments. MreB plays roles in regulation of cell polarity, length, and width, whereas RodZ is involved in regulation of length and width. In this review, I summarize our research and research from other groups on bacterial cell shape.

细菌的细胞形状多样,如圆形、棒状、螺旋状等。然而,每种细菌都有自己的形状,它们的长度和宽度在一个种群中保持在一个狭窄的范围内。细胞形态异常常导致细胞死亡。因此,保持它们的形状是很重要的。杆状细菌大肠杆菌需要调节细胞的极性、长度和宽度,以形成杆状。细菌的形状是由基因调控的。特别是细菌肌动蛋白MreB及其相互作用蛋白参与调控。我们已经确定了rodZ是一种新的细胞形状决定因素,并在过去的几年里一直在分析rodZ蛋白。rodZ突变体是圆形的。我们分离了rodZ突变体的抑制突变体。抑制器的形状为棒状。通过分析rodZ突变体和抑制子,我们得出结论,rodZ有助于MreB细丝的组装。MreB参与细胞极性、长度和宽度的调控,而RodZ参与细胞长度和宽度的调控。本文就我们的研究和其他研究小组在细菌细胞形态方面的研究进行综述。
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引用次数: 0
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Nihon saikingaku zasshi. Japanese journal of bacteriology
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