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Nihon saikingaku zasshi. Japanese journal of bacteriology最新文献

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Studies on the mechanism of bacterial flagellar rotation and the flagellar number regulation. 细菌鞭毛旋转机制及鞭毛数目调节的研究。
Pub Date : 2016-01-01 DOI: 10.3412/jsb.71.185
Seiji Kojima

Many motile bacteria have the motility organ, the flagellum. It rotates by the rotary motor driven by the ion-motive force and is embedded in the cell surface at the base of each flagellar filament. Many researchers have been studying its rotary mechanism for years, but most of the energy conversion processes have been remained in mystery. We focused on the flagellar stator, which works at the core process of energy conversion, and found that the periplasmic region of the stator changes its conformation to be activated only when the stator units are incorporated into the motor and anchored at the cell wall. Meanwhile, the physiologically important supramolecular complex is localized in the cell at the right place and the right time with a proper amount. How the cell achieves such a proper localization is the fundamental question for life science, and we undertake this problem by analyzing the mechanism for biogenesis of a single polar flagellum of Vibrio alginolyticus. Here I describe the molecular mechanism of how the flagellum is generated at the specific place with a proper number, and also how the flagellar stator is incorporated into the motor to complete the functional motor assembly, based on our studies.

许多能运动的细菌都有运动器官——鞭毛。它由离子动力驱动的旋转马达旋转,嵌入细胞表面每根鞭毛细丝的基部。多年来,许多研究人员一直在研究它的旋转机制,但大部分的能量转换过程仍然是一个谜。我们重点研究了鞭毛定子,它在能量转换的核心过程中起作用,发现定子的质周区域改变了它的构象,只有当定子单元被并入马达并锚定在细胞壁上时才会被激活。同时,生理上重要的超分子复合物在适当的时间、适当的位置定位于细胞内。细胞如何实现这种适当的定位是生命科学的基本问题,我们通过分析溶藻弧菌单极鞭毛的生物发生机制来解决这个问题。在这里,我根据我们的研究,描述了鞭毛如何在特定的位置以适当的数量产生的分子机制,以及鞭毛定子如何被纳入电机以完成功能电机组装。
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引用次数: 0
A complete view of the Escherichia coli O-antigen biosynthesis gene cluster and the development of molecular-based O-serogrouping methods. 大肠杆菌o型抗原生物合成基因簇的完整观点和基于分子的o型血清分组方法的发展。
Pub Date : 2016-01-01 DOI: 10.3412/JSB.71.209
A. Iguchi
Much of what we know about Escherichia coli populations and epidemiology is defined at some level by O serogroups. Moreover, in our collective knowledge, outbreak and disease reports and elsewhere, all information of pathogenic E. coli have O serogroup records. O-serogroup diversification shows a strong association with the genetic diversity of O-antigen biosynthesis genes, and O-serogroup-specific sequences can be used as genetic markers for identifying O serogroups. We sequenced all the known O-antigen biosynthesis gene clusters (O-AGCs) from the 184 E. coli defined O serogroups and determined their genetic makeup and diversity. Subsequently, based on a highly detailed analysis of O-AGCs, we developed comprehensive and practical molecular O-serogrouping platforms; PCR-based "E. coli O-genotuping PCR" and in silico-based "SerotypeFinder". These simple and exhaustive systems may integrate microbial typing, genomics and evolutionary analyses.
我们对大肠杆菌种群和流行病学的了解在某种程度上是由O血清群定义的。此外,在我们的集体知识、疫情和疾病报告等方面,所有致病性大肠杆菌的信息都有O血清组记录。O-血清群多样性与O抗原生物合成基因的遗传多样性密切相关,O-血清群特异性序列可作为鉴定O-血清群的遗传标记。我们对184个大肠杆菌中所有已知的O抗原生物合成基因簇(O- agcs)进行了测序,确定了它们的基因组成和多样性。随后,在对O-AGCs进行详细分析的基础上,我们开发了全面实用的分子o -血清分型平台;基于PCR的“大肠杆菌o型基因分型PCR”和基于硅的“血清型查找器”。这些简单而详尽的系统可以整合微生物分型、基因组学和进化分析。
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引用次数: 2
Obituary. 讣告。
Pub Date : 2016-01-01 DOI: 10.3412/jsb.71.181
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引用次数: 0
Actin cytoskeleton-modulating T3SS2 effectors and their contribution to the Vibrio parahaemolyticus-induced diarrhea. 肌动蛋白细胞骨架调节T3SS2效应物及其对副溶血性弧菌诱导腹泻的作用。
Pub Date : 2016-01-01 DOI: 10.3412/JSB.71.199
Hirotaka Hiyoshi
To understand how bacterial pathogens cause diseases is the most important step in order to prevent the infection and develop an effective treatment. However, the past proceeding studies make us aware of quite-complicated interactions between the host and pathogenic bacteria. Vibrio parahaemolyticus, a food-born pathogen that is a subject of our study, causes inflammatory diarrhea in human upon ingestion of contaminated raw or undercooked seafood. Many virulence factors has been proposed since its discovery in Osaka around 70 years ago, while our research group has revealed that one of these virulence factors, type 3 secretion system 2 (T3SS2), is necessary for diarrhea induced by this bacterium. In addition, we recently found two novel T3SS2 effectors (VopO and VopV) that manipulate the actin cytoskeleton in infected host cells. In this article, I would like to show our findings with regard to biological activities of the effectors and their contributions to the T3SS2-induced enterotoxicity.
了解细菌病原体如何引起疾病是预防感染和开发有效治疗方法的最重要步骤。然而,过去进行的研究使我们意识到宿主与致病菌之间相当复杂的相互作用。副溶血性弧菌是一种食源性病原体,是我们研究的主题,在食用被污染的生或未煮熟的海鲜后引起人类炎症性腹泻。自70年前在大阪发现以来,已经提出了许多毒力因子,而我们的研究小组已经发现其中一种毒力因子,3型分泌系统2 (T3SS2),是由这种细菌引起的腹泻所必需的。此外,我们最近发现了两种新的T3SS2效应物(VopO和VopV),它们在感染的宿主细胞中操纵肌动蛋白细胞骨架。在这篇文章中,我想展示我们关于效应物的生物活性及其对t3ss2诱导的肠毒性的贡献的发现。
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引用次数: 0
Luncheon Seminar. 午餐研讨会。
Pub Date : 2016-01-01 DOI: 10.3412/jsb.71.165
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引用次数: 0
[Evaluation of resistance mechanism against antimicrobial factors in gram positive bacteria]. [革兰氏阳性菌对抗菌因子的耐药机制评价]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.391
M. Kawada-Matsuo
It is known that various antibacterial agents are observed in human for preventing bacterial infection. In this study, in order to elucidate the resistance mechanism against antimicrobial agents derived of human and bacteriocins derived of commensal bacteria, we systematically evaluated the roles of the bacteria-specific two-component systems of Staphylococcus aureus and Streptococcus mutans which colonize to different sites. Two-component systems (TCSs) are specific regulatory systems in bacteria that play an important role in sensing and adapting to the environment. As the result, four TCSs of S. aureus and three TCSs of S. mutans were associated with resistance against defensin and LL37 as antimaicrobial peptides and nisin A and nukacin ISK-1 as bacteriocins. Two TCSs that are individually associated with resistance against the bacteriocins nisin A (class I type A[I]) and nukacin ISK-1 (class I type A[II]) were identified in S. mutans, whereas one TCS is associated with main resistance against the both of nisin A and nukacin ISK-1. This result suggested that TCSs play important roles on acquisition of human- and bacteria-derived antibacterial agents. However, the resistance mechanism via TCS in S. aureus is quite different from that of in S. mutans. Additional evidence suggests that these TCSs are required for co-existence with other bacteria producing to nisin A or nukacin ISK-1, meaning that the roles of bacteriocins in the interactions between different species of commensal bacteria and the importance of TCSs in this process. Our results will highlight the roles of bacterial colonization in human being are constituted on the adaptation against antibacterial agents derived from human and commensal bacteria via TCSs.
在人体中观察到多种抗菌剂可预防细菌感染。在本研究中,为了阐明对人源性抗菌药物和共生菌源性细菌素的耐药机制,我们系统地评估了金黄色葡萄球菌和变形链球菌在不同部位定殖的细菌特异性双组分系统的作用。双组分系统(Two-component system, TCSs)是细菌的一种特殊调控系统,在感知和适应环境中起着重要作用。结果表明,金黄色葡萄球菌的4个TCSs和变形葡萄球菌的3个TCSs与防御素和LL37的抗微生物肽以及nisin A和nukacin ISK-1的细菌素的耐药有关。在变形链球菌中鉴定出两种单独与对细菌素nisin A (I类A型[I])和nukacin ISK-1 (I类A型[II])耐药相关的TCS,而一种TCS与对nisin A和nukacin ISK-1的主要耐药相关。提示tcs在人源性和细菌源性抗菌药物的获得中起重要作用。然而,金黄色葡萄球菌通过TCS的耐药机制与变形葡萄球菌有很大不同。其他证据表明,这些tcs是与其他产生nisin A或nukacin ISK-1的细菌共存所必需的,这意味着细菌素在不同种类的共生细菌之间的相互作用中的作用以及tcs在这一过程中的重要性。我们的研究结果将强调细菌定植在人体中的作用是建立在对来自人类和共生细菌的抗菌剂的适应上。
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引用次数: 0
[Structure and function of the bacterial flagellar type III protein export system in Salmonella
]. [沙门氏菌鞭毛III型蛋白输出系统的结构与功能
]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.351
Tohru Minamino

The bacterial flagellum is a filamentous organelle that propels the bacterial cell body in liquid media. For construction of the bacterial flagellum beyond the cytoplasmic membrane, flagellar component proteins are transported by its specific protein export apparatus from the cytoplasm to the distal end of the growing flagellar structure. The flagellar export apparatus consists of a transmembrane export gate complex and a cytoplasmic ATPase ring complex. Flagellar substrate-specific chaperones bind to their cognate substrates in the cytoplasm and escort the substrates to the docking platform of the export gate. The export apparatus utilizes ATP and proton motive force across the cytoplasmic membrane as the energy sources to drive protein export and coordinates protein export with assembly by ordered export of substrates to parallel with their order of assembly. In this review, we summarize our current understanding of the structure and function of the flagellar protein export system in Salmonella enterica serovar Typhimurium.

细菌鞭毛是一种在液体介质中推动细菌细胞体的丝状细胞器。为了在细胞质膜外构建细菌鞭毛,鞭毛成分蛋白质通过其特定的蛋白质输出装置从细胞质运输到生长的鞭毛结构的远端。鞭毛出口装置由跨膜出口门复合体和细胞质atp酶环复合体组成。鞭毛底物特异性伴侣与细胞质中的同源底物结合,并将底物护送到出口门的对接平台。输出装置利用跨越细胞质膜的ATP和质子动力作为能量源驱动蛋白质输出,并通过有序输出底物使其与组装顺序平行来协调蛋白质输出与组装。本文综述了目前对肠炎沙门氏菌血清型鼠伤寒沙门氏菌鞭毛蛋白输出系统的结构和功能的研究进展。
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引用次数: 2
[Current status of bacteriological studies at prefectural and municipal public health institutes in Japan]. [日本县和市公共卫生机构细菌学研究的现状]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.309
Hiroto Shinomiya, Kazuko Seto, Jun Kawase, Kentaro Arikawa, Keiji Funatogawa, Masahiro Suzuki, Hiroaki Kubota, Komei Shirabe

Prefectural and municipal public health institutes are located in prefectures and ordinance-designated cities in Japan, and play a vital role in the regional surveillance of infectious diseases and foodborne illnesses. These institutes, in close cooperation with national institutes such as the National Institute of Infectious Diseases and the National Institute of Health Sciences, construct the national surveillance network for infectious diseases and their causative agents. Bacteriological examinations and studies on a variety of infectious diseases and foodborne illnesses are core activities of prefectural and municipal public health institutes, through which novel and important bacteriological findings have been acquired. In this article, we report the latest findings regarding bacteriological examinations/studies and interesting cases at these institutes, especially concerning foodborne illnesses, tuberculosis, and antimicrobial resistances.

日本的县和市公共卫生机构位于县和法令指定的城市,在传染病和食源性疾病的区域监测中发挥着至关重要的作用。这些研究所与国家传染病研究所和国家卫生科学研究所等国家研究所密切合作,建立了国家传染病及其病原体监测网络。对各种传染病和食源性疾病进行细菌学检查和研究是县、市公共卫生机构的核心工作,通过这些工作获得了新的重要细菌学发现。在这篇文章中,我们报告了这些研究所关于细菌学检查/研究的最新发现和有趣的病例,特别是关于食源性疾病,结核病和抗菌素耐药性。
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引用次数: 0
[Molecular targets of bacterial effectors and toxins that underlie vulnerability to diseases]. [导致疾病易感性的细菌效应物和毒素的分子目标]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.319
Takeshi Shimizu, Yukako Fujinaga, Akiko Takaya, Hiroshi Ashida, Toshio Kodama, Masanori Hatakeyama

Pathogenic bacteria produce a variety of effectors and/or toxins, which subvert target cell/tissue functions in the infected hosts. Some of those effectors/toxins also perturb host defense mechanism, thereby making up more complicated pathophysiological conditions. Such bacterial effectors/toxins may have been positively selected during evolution because they directly strike vulnerable points in the host system. In turn, this indicates that systemic exploration of molecules and signaling pathways targeted by bacterial effectors/toxins provides a powerful tool in digging up an unexpected Achilles' heel(s), malfunctioning of which gives rise to disorders not restricted to infectious diseases. Based on this viewpoint, this review shows molecular basis underlying host susceptibility and vulnerability to diseases through the studies of host molecules targeted by bacterial effectors and toxins.

致病菌产生多种效应物和/或毒素,破坏受感染宿主的靶细胞/组织功能。其中一些效应器/毒素还会扰乱宿主的防御机制,从而构成更复杂的病理生理条件。这些细菌效应物/毒素可能在进化过程中被积极选择,因为它们直接攻击宿主系统的脆弱点。反过来,这表明对细菌效应物/毒素靶向的分子和信号通路的系统探索为挖掘意想不到的阿喀琉斯之踵提供了一个强大的工具,其故障会导致不限于传染病的疾病。基于这一观点,本文通过对细菌效应物和毒素靶向宿主分子的研究,揭示宿主易感性和易感染性疾病的分子基础。
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引用次数: 0
[Diversity in genome and epigenome of Helicobacter pylori]. [幽门螺杆菌基因组和表观基因组多样性]。
Pub Date : 2015-01-01 DOI: 10.3412/jsb.70.383
Y. Furuta
Helicobacter pylori infects human stomach and cause various gastric diseases including gastric cancer. The species is also known for rapid evolution and wide geographical diversity of genome sequence. Our team sequenced whole genome sequences of H. pylori strains isolated from Japanese patients and compared with whole genome sequences of H. pylori strains with other geographic origin and found that not only the gene repertoire but also genome structures and epigenetic modifications such as DNA methylations had large diversity with various mechanisms. Genome inversion events were geography specific and some of them were found to occur with gene duplication at their termini. DNA methylation states of H. pylori genomes suggested that they are diversified by both existence/absence repertoire of methyltransferase genes and by the movement of target recognition domain in the methyltransferase genes. Omics analysis revealed that methylation target sequence and transcriptome status are actually diversified by the domain sequence movement. We suggested that H. pylori utilizes these genome structure and methylome diversity for its adaptive evolution.
幽门螺杆菌感染人的胃,引起包括胃癌在内的各种胃疾病。该物种还以快速进化和广泛的基因组序列地理多样性而闻名。本团队对日本患者幽门螺杆菌分离株的全基因组序列进行了测序,并与其他地理来源的幽门螺杆菌菌株的全基因组序列进行了比较,发现不仅基因库,而且基因组结构和DNA甲基化等表观遗传修饰具有很大的多样性,其机制多种多样。基因组倒置事件具有地理特异性,其中一些在其末端发生基因复制。幽门螺杆菌基因组的DNA甲基化状态表明,甲基转移酶基因库的存在和缺失以及甲基转移酶基因中靶识别结构域的移动使它们的DNA甲基化状态多样化。组学分析表明,甲基化靶序列和转录组状态实际上是通过结构域序列的移动而多样化的。我们认为幽门螺杆菌利用这些基因组结构和甲基组多样性进行适应性进化。
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引用次数: 1
期刊
Nihon saikingaku zasshi. Japanese journal of bacteriology
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