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Rapid Determination of Crocin-I in Gardenia Fruits (Gardenia jasminoides Ellis) by Combining Spectral and Image Data Through Hyperspectral Imaging. 高光谱成像法快速测定栀子果实中藏红花素i的含量。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-07 DOI: 10.1002/pca.3490
Xin-Yue Xu, Xiao-Lu Jie, Jia-Hui Wu, Dan-Ping Xia, Zhou-Duan Xu, Zi-Rui Luo, Fei Fei, Wei-Kang Zhou, Yi Tao, Hirokazu Kawagishi, Jing Wu, Ping Wang, Pei-Shi Feng

Introduction: Crocin-I, a water-soluble carotenoid pigment, is an important coloring constituent in gardenia fruit. It has wide application in various industries such as food, medicine, chemical industry, and so on. So the content of crocin-I plays a key role in evaluating the quality of gardenia.

Objective: We assessed crocin-I content in gardenia with a rapid, nondestructive, and convenient method.

Method: The data of gardenia samples were scanned under a portable visible-near-infrared (Vis-NIR) hyperspectral imaging (HSI) in the spectral range of 400-1000 nm. Afterward, the spectral data along with image-related information, encompassing color and texture, were extracted from the HSI. Based on a single information and its fusion at different fusion levels (low-level, traditional mid-level fusion, and an improved mid-level fusion), partial least squares regression (PLSR) prediction models were established and compared.

Result: The results demonstrated the superiority of data fusion, which ingeniously combined spectra and image data. Compared with individual information sources, the traditional mid-level fusion model showed a robust predictive ability. The correlation coefficient of the prediction set (Rp), the root mean square error of prediction (RMSEP), and the ratios of performance to deviation (RPDP) of the model were 0.901, 0.962, and 2.262, respectively.

Conclusion: This study highlights the effectiveness of the data fusion method, showcasing its capacity to significantly enhance the prediction accuracy of crocin-I content in gardenia through the integration of hyperspectral mapping data. The findings of this research are anticipated to serve as a valuable reference for predicting the active ingredients of other Chinese herbal medicines.

藏红花素i是一种水溶性类胡萝卜素色素,是栀子果实中重要的着色成分。广泛应用于食品、医药、化工等行业。因此,西红花素i的含量是评价栀子花品质的重要指标。目的:采用快速、无损、简便的方法测定栀子花中藏红花素i的含量。方法:采用便携式可见光-近红外(Vis-NIR)高光谱成像(HSI),在400-1000 nm光谱范围内对栀子样品进行扫描。然后,从HSI中提取光谱数据以及包括颜色和纹理在内的图像相关信息。基于单一信息及其在不同融合水平(低融合、传统中级融合和改进中级融合)下的融合,建立了偏最小二乘回归(PLSR)预测模型并进行了比较。结果:将光谱数据和图像数据巧妙地结合在一起,显示了数据融合的优越性。与单个信息源相比,传统的中级融合模型具有较强的预测能力。模型的预测集相关系数(Rp)、预测均方根误差(RMSEP)和性能偏差比(RPDP)分别为0.901、0.962和2.262。结论:本研究突出了数据融合方法的有效性,通过高光谱测图数据的整合,可以显著提高栀子中藏红花素i含量的预测精度。本研究结果可为预测其他中草药的有效成分提供有价值的参考。
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引用次数: 0
Transcriptomic and Metabolomic Analyses Provide Insights Into the Flavonoid Biosynthesis in Dangshen. 转录组和代谢组分析揭示了丹参中黄酮类化合物的生物合成。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-02 DOI: 10.1002/pca.3492
Xuxia Liu, Haitang Ma, Xiaoling Liu, Xin Wang, Zhengjun Chen, Jie Yang, Wenrong Luo, Qin Li, Fude Yang, Fang Li

Introduction: Dangshen (DS) has been used for hundreds of years as a traditional Chinese medicine. It has a wide range of biological activities. Flavonoids are one of the important bioactive components with strong free radical scavenging and antioxidant capacity in DS. However, the biosynthesis process of flavonoids in DS remains unclear.

Objective: The aim of this study was to understand the biosynthesis molecular mechanism of flavonoids in DS.

Methods: In this study, metabolomics research and transcriptome sequencing for DS were carried out. Transcript and metabolite profiles were generated by high-throughput RNA sequencing (RNA-seq) data analysis and liquid chromatography-tandem mass spectrometry, respectively.

Results: In total, 256 metabolites were identified in the root, stem, leaf, and flower of DS using untargeted metabolomics. Among them, 55 flavonoids, including pinobanksin, butein, fustin, pelargonidin, apigenin, luteolin, and eriodictyol, were closely related to flavonoid metabolism, and most of them were upregulated in different tissues of DS. Furthermore, the differentially expressed genes identified by transcriptomics were mainly enriched in the biosynthesis of flavonoid, isoflavonoid, flavone, and flavonol. A number of genes, including ANS, CCOAOMT, CHI, CHS, CYP75B1, CYP75A, CYP93B2_16, CYP98A/C3'H, DFR, F3H, FLS, and HCT, may regulate the production of flavonoids in different tissues of DS. An integrated analysis of transcriptome and metabolome revealed the flavonoid biosynthetic network in DS and elucidated the diversity of flavonoid biosynthetic pathway in roots, stems, leaves, and flowers of DS.

Conclusion: Our findings provide a molecular basis and new insights into flavonoid biosynthesis in DS and lay the foundation for breeding new valuable DS cultivars.

简介丹参作为一种传统中药已有数百年的历史。它具有广泛的生物活性。黄酮类化合物是丹参中重要的生物活性成分之一,具有很强的清除自由基和抗氧化能力。然而,黄酮类化合物在 DS 中的生物合成过程仍不清楚:本研究旨在了解 DS 中黄酮类化合物的生物合成分子机制:本研究对DS进行了代谢组学研究和转录组测序。结果:通过高通量 RNA 测序(RNA-seq)数据分析和液相色谱-串联质谱分析,共发现了 256 种代谢物:结果:利用非靶向代谢组学,在 DS 的根、茎、叶和花中共鉴定出 256 种代谢物。其中,55种黄酮类化合物与黄酮类化合物的代谢密切相关,包括松柏苷、丁香苷、苦参苷、芹菜苷、木犀草素和麦角苷。此外,转录组学发现的差异表达基因主要集中在类黄酮、异黄酮、黄酮和黄酮醇的生物合成中。ANS、CCOAOMT、CHI、CHS、CYP75B1、CYP75A、CYP93B2_16、CYP98A/C3'H、DFR、F3H、FLS和HCT等多个基因可能调控DS不同组织中黄酮类化合物的产生。转录组和代谢组的综合分析揭示了DS中黄酮类化合物的生物合成网络,阐明了DS根、茎、叶、花中黄酮类化合物生物合成途径的多样性:我们的研究结果为 DS 黄酮类化合物的生物合成提供了分子基础和新见解,为培育新的有价值 DS 栽培品种奠定了基础。
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引用次数: 0
Alkaloid profiling of the new species Corydalis huangshanensis and other 13 medicinal plants in genus Corydalis. 新种黄山堇菜及其他 13 种堇菜属药用植物的生物碱分析。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-07-17 DOI: 10.1002/pca.3417
Haiwen Zhang, Shanshan Chu, Lu Jiang, Qingyun Chan, Zhenyu Zhang, Ming'en Cheng

Introduction: Corydalis DC., the largest genus of Papaveraceae, comprises numerous species known for their abundant alkaloid content and historical use in clinical medicine. Recently, a new species of genus Corydalis named Corydalis huangshanensis Lu Q. Huang & H. S. Peng was discovered in the Huangshan Mountains of Anhui Province, China.

Objective: To compare the chemical characteristics of C. huangshanensis and other 13 Corydalis species, aiming to elucidate the potential medicinal value of this new species.

Materials and methods: The chemical constituents of C. huangshanensis and other 13 medicinal plants of genus Corydalis were analyzed using ultra-high-performance liquid chromatography Q-Exactive Plus hybrid quadrupole-Orbitrap mass spectrometer (Q-Orbitrap) mass technology. The differences in the alkaloids in the 14 species were distinguished by chemometrics.

Results: The mass spectrometry fragmentation information and relative content of 72 alkaloids were obtained. Orthogonal partial least squares discriminant analysis (OPLS-DA) and cluster heat mapping analysis showed that these 14 species were divided into two groups. The clustering relationship between C. huangshanensis and C. decumbens (Thunb.) Pers. was similar, exhibiting similar chemical compositions and characteristics. These results indicate the potential pharmacological effects of C. huangshanensis.

Conclusion: This study enhances our understanding of the chemical classification of Corydalis and provides a basis for speculations on the medicinal value of C. huangshanensis.

导言:堇菜属(Corydalis DC.)是木犀科(Papaveraceae)中最大的一个属,由许多物种组成,以其丰富的生物碱含量和在临床医学中的历史用途而闻名。最近,在中国安徽省黄山发现了一个堇菜属的新物种,名为黄山堇菜(Corydalis huangshanensis):比较黄山堇属植物与其他 13 个堇属植物的化学特征,旨在阐明该新物种的潜在药用价值:采用超高效液相色谱 Q-Exactive Plus 混合四极杆-轨道阱质谱(Q-Orbitrap)技术分析了黄山堇菜和其他 13 种堇菜属药用植物的化学成分。用化学计量学方法区分了 14 个物种生物碱的差异:结果:获得了 72 种生物碱的质谱碎片信息和相对含量。正交偏最小二乘判别分析(OPLS-DA)和聚类热图分析表明,这 14 个物种被分为两组。C. huangshanensis 和 C. decumbens (Thunb.) Pers.的聚类关系相似,表现出相似的化学成分和特征。这些结果表明黄山杉具有潜在的药理作用:本研究加深了我们对堇菜化学分类的了解,并为推测黄山堇菜的药用价值提供了依据。
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引用次数: 0
An integrated approach for discrimination of Magnoliae officinalis cortex before and after being processed by ginger juice combining LC/MS, GC/MS, intelligent sensors, and chemometrics. 一种结合 LC/MS、GC/MS、智能传感器和化学计量学的综合方法,用于鉴别姜汁处理前后的厚朴皮质。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-06 DOI: 10.1002/pca.3430
Li Yang, Zhenzhen Xue, Zhiyong Li, Jiaqi Li, Bin Yang

Introduction: Magnoliae officinalis cortex (MOC) is an important traditional Chinese medicine (TCM), and both raw and stir-fried MOC were commonly used in clinic.

Objectives: This study aimed to discriminate MOC and MOC stir-fried with ginger juice (MOCG) using an integrated approach combining liquid chromatography/mass spectrometry (LC/MS), gas chromatography/mass spectrometry (GC/MS), intelligent sensors, and chemometrics.

Methods: The sensory characters of the samples were digitalized using intelligent sensors, i.e., colorimeter, electronic nose, and electronic tongue. Meanwhile, the chemical profiles of the samples were analyzed using LC/MS and GC/MS methods. Chemometric models were constructed to discriminate samples of MOC and MOCG based on not only the sensory data but also the chemical data.

Results: The differential sensory characters (L* and b* from colorimeter, ANS from electronic tongue, W1S and W2S from electronic nose) and the differential chemical compounds (26 and 11 compounds from LC/MS and GC/MS, respectively) were discovered between MOC and MOCG. Furthermore, twelve differential compounds showed good relations with differential sensory characters. Finally, artificial neural network models were established to discriminate samples of MOC and MOCG, in which W1S, W2S, ANS, b*, and 10 differential compounds were among the top 10 important variables, respectively.

Conclusion: Samples of MOC and MOCG can be discriminated not only by the digitalized data of color, taste, and scent detected by intelligent sensors but also by chemical information obtained from LC/MS and GC/MS using chemometrics. The variations in sensory characters and chemical compounds between MOC and MOCG partially resulted from the Maillard reaction products and the oxidation of some compounds in the stir-frying process.

简介厚朴(Magnoliae officinalis cortex,MOC)是一种重要的传统中药,生炒厚朴均为临床常用药:本研究旨在采用液相色谱/质谱法(LC/MS)、气相色谱/质谱法(GC/MS)、智能传感器和化学计量学相结合的综合方法鉴别厚朴和姜汁炒厚朴(MOCG):方法:使用智能传感器(即色度计、电子鼻和电子舌)对样品的感官特征进行数字化处理。同时,使用 LC/MS 和 GC/MS 方法分析了样品的化学特征。根据感官数据和化学数据,建立了化学计量模型来区分 MOC 和 MOCG 样品:结果:在 MOC 和 MOCG 之间发现了不同的感官特征(色度计的 L* 和 b*、电子舌的 ANS、电子鼻的 W1S 和 W2S)和不同的化合物(LC/MS 和 GC/MS 分别发现 26 种和 11 种化合物)。此外,有 12 种差异化合物与差异感官特征表现出良好的关系。最后,建立了人工神经网络模型来区分 MOC 和 MOCG 样品,其中 W1S、W2S、ANS、b* 和 10 种差异化合物分别是前 10 个重要变量:结论:MOC 和 MOCG 样品不仅可以通过智能传感器检测到的颜色、味道和气味的数字化数据进行鉴别,还可以通过化学计量学从 LC/MS 和 GC/MS 中获得的化学信息进行鉴别。MOC 和 MOCG 之间感官特征和化学成分的变化部分源于炒制过程中的 Maillard 反应产物和某些化合物的氧化。
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引用次数: 0
Rapid mitragynine quantification and fingerprinting of products from Mitragyna speciosa Korth. leaf (Kratom) using high-performance thin-layer chromatography. 利用高效薄层色谱法对桔梗叶(Mitragyna speciosa Korth.
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-28 DOI: 10.1002/pca.3442
Toveelah Hayeema, Juraithip Wungsintaweekul

Introduction: Kratom (leaves from Mitragyna speciosa Korth.; Rubiaceae) is a herbal medicine known for its analgesic properties and psychoactive effects. Kratom in Thailand is currently legal; however, it is prohibited in some countries and considered a narcotic plant.

Objective: Our aim was to establish a reliable, simple, and rapid method for quantifying mitragynine in Kratom leaves and related products through a combination of high-performance thin-layer chromatography (HPTLC) and densitometry.

Methodology: A densitometric HPTLC method was developed and validated in terms of specificity, linearity, limit of detection (LOD), limit of quantification (LOQ), accuracy, precision, and robustness. The fingerprints of kratom leaves, Mitragyna spp., and related products were constructed.

Results: For HPTLC, samples were applied to silica gel 60 F254 plates, and the mobile phase comprised n-hexane, ethyl acetate, and triethylamine (1:1:0.15, v/v/v). Densitometric detection was carried out under ultraviolet light at a wavelength of 226 nm. The validated method exhibited a range of 14.31-143.10 μg/mL, yielding a correlation coefficient of 0.9993. Spiked recovery rates were within a range of 98.3%-100.9%, and the LOD and LOQ were 3.80 and 11.53 μg/mL, respectively. Kratom samples were analyzed with the developed method, and the correlation coefficient was 0.9641, compared to the high-performance liquid chromatography-diode-array detection (HPLC-DAD) method. The HPTLC fingerprints displayed a distinctive pattern, facilitating discrimination among different plant parts and Mitragyna spp.

Conclusion: The established method offers the advantages of simplicity, ease of use, and speed of analysis, serving as a practical alternative for mitragynine quantification in kratom leaf and its related products.

简介:桔梗(Mitragyna speciosa Korth.的叶子;茜草科)是一种草药,因其镇痛特性和精神作用而闻名。桔梗目前在泰国是合法的,但在一些国家被禁止使用,并被视为一种麻醉植物:我们的目的是建立一种可靠、简单、快速的方法,通过结合使用高效薄层色谱法(HPTLC)和密度测量法,对桔梗叶和相关产品中的米曲宁进行定量分析:开发了一种密度计 HPTLC 方法,并在特异性、线性、检出限 (LOD)、定量限 (LOQ)、准确度、精密度和稳健性方面进行了验证。构建了桔梗叶、桔梗属植物和相关产品的指纹图谱:HPTLC 采用硅胶 60 F254 薄层板,流动相为正己烷、乙酸乙酯和三乙胺(1:1:0.15, v/v/v)。在波长为 226 nm 的紫外光下进行密度检测。验证方法的检测范围为 14.31-143.10 μg/mL,相关系数为 0.9993。加标回收率为98.3%-100.9%,最低检出限(LOD)和最低定量限(LOQ)分别为3.80和11.53 μg/mL。采用所开发的方法对桔梗样品进行分析,与高效液相色谱-二极管阵列检测法(HPLC-DAD)相比,相关系数为0.9641。HPTLC指纹图谱显示出独特的模式,有助于区分不同的植物部位和密陀僧属植物:所建立的方法具有简单、易用和分析速度快等优点,是对桔梗叶及其相关产品中的丝氨酸进行定量分析的实用替代方法。
{"title":"Rapid mitragynine quantification and fingerprinting of products from Mitragyna speciosa Korth. leaf (Kratom) using high-performance thin-layer chromatography.","authors":"Toveelah Hayeema, Juraithip Wungsintaweekul","doi":"10.1002/pca.3442","DOIUrl":"10.1002/pca.3442","url":null,"abstract":"<p><strong>Introduction: </strong>Kratom (leaves from Mitragyna speciosa Korth.; Rubiaceae) is a herbal medicine known for its analgesic properties and psychoactive effects. Kratom in Thailand is currently legal; however, it is prohibited in some countries and considered a narcotic plant.</p><p><strong>Objective: </strong>Our aim was to establish a reliable, simple, and rapid method for quantifying mitragynine in Kratom leaves and related products through a combination of high-performance thin-layer chromatography (HPTLC) and densitometry.</p><p><strong>Methodology: </strong>A densitometric HPTLC method was developed and validated in terms of specificity, linearity, limit of detection (LOD), limit of quantification (LOQ), accuracy, precision, and robustness. The fingerprints of kratom leaves, Mitragyna spp., and related products were constructed.</p><p><strong>Results: </strong>For HPTLC, samples were applied to silica gel 60 F<sub>254</sub> plates, and the mobile phase comprised n-hexane, ethyl acetate, and triethylamine (1:1:0.15, v/v/v). Densitometric detection was carried out under ultraviolet light at a wavelength of 226 nm. The validated method exhibited a range of 14.31-143.10 μg/mL, yielding a correlation coefficient of 0.9993. Spiked recovery rates were within a range of 98.3%-100.9%, and the LOD and LOQ were 3.80 and 11.53 μg/mL, respectively. Kratom samples were analyzed with the developed method, and the correlation coefficient was 0.9641, compared to the high-performance liquid chromatography-diode-array detection (HPLC-DAD) method. The HPTLC fingerprints displayed a distinctive pattern, facilitating discrimination among different plant parts and Mitragyna spp.</p><p><strong>Conclusion: </strong>The established method offers the advantages of simplicity, ease of use, and speed of analysis, serving as a practical alternative for mitragynine quantification in kratom leaf and its related products.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"296-306"},"PeriodicalIF":3.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142081254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatial metabolomics method to reveal the differences in chemical composition of raw and honey-fried Stemona tuberosa Lour. by using UPLC-Orbitrap Fusion MS and desorption electrospray ionization mass spectrometry imaging. 利用 UPLC-Orbitrap Fusion MS 和解吸电喷雾电离质谱成像技术,采用空间代谢组学方法揭示生食和蜜炒 Stemona tuberosa Lour.化学成分的差异。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-07-28 DOI: 10.1002/pca.3428
Haixuan Xiong, Shuding Sun, Weiwei Zhang, Di Zhao, Xuefang Liu, Yange Tian, Suxiang Feng

Introduction: Stemona tuberosa Lour. (ST) is a significant traditional Chinese medicine (TCM) renowned for its antitussive and insecticidal properties. ST is commonly subjected to processing in clinical practice before being utilized as a medicinal substance. Currently, the customary technique for processing ST is honey-fried. Nevertheless, the specific variations in chemical constituents of ST before and after honey-fried remain unclear.

Objective: This work aimed to analyze the variations in chemical constituents of ST before and after honey-fried and to study the distribution of differential markers in the roots.

Methods: UPLC-Orbitrap Fusion MS combined with molecular network analysis was used to analyze the metabolome of ST and honey-fried ST (HST) and to screen the differential metabolites by multivariate statistical analysis. Spatial metabolomics was applied to study the distribution of differential metabolites by desorption electrospray ionization mass spectrometry imaging (DESI-MSI).

Results: The ST and HST exhibited notable disparities, with 56 and 61 chemical constituents found from each, respectively. After processing, the types of alkaloids decreased, and 12 differential metabolites were screened from the common compounds. The notable component variations were epibisdehydro-tuberostemonine J, neostenine, tuberostemonine, croomine, neotuberostemonine, and so forth. MSI visualized the spatial distribution of differential metabolites.

Conclusions: Our research provided a rapid and effective visualization method for the identification and spatial distribution of metabolites in ST. Compared with the traditional method, this method offered more convincing data supporting the processing mechanism investigations of Stemona tuberosa from a macroscopic perspective.

介绍:Stemona tuberosa Lour.(ST) 是一种重要的传统中药,以其止咳和杀虫特性而闻名。在临床实践中,茎叶通常要经过加工才能用作药材。目前,加工 ST 的习惯技术是蜜炒。然而,蜜炒前后 ST 化学成分的具体变化仍不清楚:本研究旨在分析蜜炒前后 ST 化学成分的变化,并研究差异标记物在根中的分布:方法:采用 UPLC-Orbitrap Fusion MS 结合分子网络分析技术分析蜜炒 ST 和蜜炒 ST(HST)的代谢组,并通过多元统计分析筛选差异代谢物。通过解吸电喷雾电离质谱成像(DESI-MSI),应用空间代谢组学研究了差异代谢物的分布:结果:ST 和 HST 表现出明显的差异,分别发现了 56 和 61 种化学成分。经过处理后,生物碱的种类有所减少,从普通化合物中筛选出了 12 种不同的代谢物。值得注意的成分变化是表双脱氢柚木碱 J、新柚木碱、柚木碱、新柚木碱等。MSI 对不同代谢物的空间分布进行了可视化分析:我们的研究为 ST 中代谢物的鉴定和空间分布提供了一种快速有效的可视化方法。结论:我们的研究为 ST 代谢物的鉴定和空间分布提供了快速有效的可视化方法,与传统方法相比,该方法从宏观角度为 Stemona tuberosa 的加工机制研究提供了更有说服力的数据支持。
{"title":"Spatial metabolomics method to reveal the differences in chemical composition of raw and honey-fried Stemona tuberosa Lour. by using UPLC-Orbitrap Fusion MS and desorption electrospray ionization mass spectrometry imaging.","authors":"Haixuan Xiong, Shuding Sun, Weiwei Zhang, Di Zhao, Xuefang Liu, Yange Tian, Suxiang Feng","doi":"10.1002/pca.3428","DOIUrl":"10.1002/pca.3428","url":null,"abstract":"<p><strong>Introduction: </strong>Stemona tuberosa Lour. (ST) is a significant traditional Chinese medicine (TCM) renowned for its antitussive and insecticidal properties. ST is commonly subjected to processing in clinical practice before being utilized as a medicinal substance. Currently, the customary technique for processing ST is honey-fried. Nevertheless, the specific variations in chemical constituents of ST before and after honey-fried remain unclear.</p><p><strong>Objective: </strong>This work aimed to analyze the variations in chemical constituents of ST before and after honey-fried and to study the distribution of differential markers in the roots.</p><p><strong>Methods: </strong>UPLC-Orbitrap Fusion MS combined with molecular network analysis was used to analyze the metabolome of ST and honey-fried ST (HST) and to screen the differential metabolites by multivariate statistical analysis. Spatial metabolomics was applied to study the distribution of differential metabolites by desorption electrospray ionization mass spectrometry imaging (DESI-MSI).</p><p><strong>Results: </strong>The ST and HST exhibited notable disparities, with 56 and 61 chemical constituents found from each, respectively. After processing, the types of alkaloids decreased, and 12 differential metabolites were screened from the common compounds. The notable component variations were epibisdehydro-tuberostemonine J, neostenine, tuberostemonine, croomine, neotuberostemonine, and so forth. MSI visualized the spatial distribution of differential metabolites.</p><p><strong>Conclusions: </strong>Our research provided a rapid and effective visualization method for the identification and spatial distribution of metabolites in ST. Compared with the traditional method, this method offered more convincing data supporting the processing mechanism investigations of Stemona tuberosa from a macroscopic perspective.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"166-180"},"PeriodicalIF":3.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141788853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unveiling Colombia's medicinal Cannabis sativa treasure trove: Phenotypic and Chemotypic diversity in legal cultivation. 揭开哥伦比亚药用大麻宝库的神秘面纱:合法种植中的表型和化学型多样性。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-21 DOI: 10.1002/pca.3436
Diego J Enríquez, Julio C Alonso, Lucas Hille, Stefan Brand, Ulrike Holzgrabe, Daniela Vergara, Guillermo Montoya, Yesid A Ramírez

Introduction: Cannabis sativa is a highly versatile plant with a long history of cultivation and domestication. It produces multiple compounds that exert distinct and valuable therapeutic effects by modulating diverse biological systems, including the endocannabinoid system (ECS). Access to standardized, metabolically diverse, and reproducible C. sativa chemotypes and chemovars is essential for physicians to optimize individualized patient treatment and for industries to conduct drug-discovery campaigns.

Objective: This study aimed to characterize and assess the phytochemical diversity of C. sativa chemotypes in diverse ecological regions of Colombia, South America.

Methodology: Ten cannabinoids and 23 terpenes were measured using liquid and gas chromatography, in addition to other phenotypic traits, in 156 C. sativa plants that were grown in diverse ecological regions in Colombia, a hotspot for global biodiversity.

Results: Our results reveal significant phytochemical diversity in Colombian-grown C. sativa plants, with four distinct chemotypes based on cannabinoid profile. The significant amount of usually uncommon terpenes suggests that Colombia's environments may have unique capabilities that allow the plant to express these compounds. Colombia's diverse climates offer enormous cultivation potential, making it a key player in both domestic and international medicinal and recreational C. sativa trade.

Conclusion: These findings underscore Colombia's capacity to pioneer global C. sativa production diversification, particularly in South America with new emerging markets.

简介大麻是一种用途广泛的植物,其种植和驯化历史悠久。它能产生多种化合物,通过调节不同的生物系统(包括内源性大麻素系统 (ECS))发挥独特而有价值的治疗效果。获得标准化、代谢多样化和可重现的 C. sativa 化学型和化学变种对于医生优化患者的个体化治疗和工业界开展药物发现活动至关重要:本研究旨在描述和评估南美洲哥伦比亚不同生态区域 C. sativa 化学型的植物化学多样性:除其他表型特征外,还使用液相和气相色谱法测量了生长在全球生物多样性热点地区哥伦比亚不同生态区域的 156 株 C. sativa 植物中的 10 种大麻素和 23 种萜类化合物:结果:我们的研究结果表明,哥伦比亚种植的 C. sativa 植物具有显著的植物化学多样性,根据大麻素特征可分为四种不同的化学类型。大量通常不常见的萜类化合物表明,哥伦比亚的环境可能具有独特的能力,允许植物表达这些化合物。哥伦比亚多样的气候条件提供了巨大的种植潜力,使其成为国内外药用和娱乐大麻贸易的重要参与者:这些发现强调了哥伦比亚开拓全球茄科植物生产多样化的能力,尤其是在拥有新兴市场的南美洲。
{"title":"Unveiling Colombia's medicinal Cannabis sativa treasure trove: Phenotypic and Chemotypic diversity in legal cultivation.","authors":"Diego J Enríquez, Julio C Alonso, Lucas Hille, Stefan Brand, Ulrike Holzgrabe, Daniela Vergara, Guillermo Montoya, Yesid A Ramírez","doi":"10.1002/pca.3436","DOIUrl":"10.1002/pca.3436","url":null,"abstract":"<p><strong>Introduction: </strong>Cannabis sativa is a highly versatile plant with a long history of cultivation and domestication. It produces multiple compounds that exert distinct and valuable therapeutic effects by modulating diverse biological systems, including the endocannabinoid system (ECS). Access to standardized, metabolically diverse, and reproducible C. sativa chemotypes and chemovars is essential for physicians to optimize individualized patient treatment and for industries to conduct drug-discovery campaigns.</p><p><strong>Objective: </strong>This study aimed to characterize and assess the phytochemical diversity of C. sativa chemotypes in diverse ecological regions of Colombia, South America.</p><p><strong>Methodology: </strong>Ten cannabinoids and 23 terpenes were measured using liquid and gas chromatography, in addition to other phenotypic traits, in 156 C. sativa plants that were grown in diverse ecological regions in Colombia, a hotspot for global biodiversity.</p><p><strong>Results: </strong>Our results reveal significant phytochemical diversity in Colombian-grown C. sativa plants, with four distinct chemotypes based on cannabinoid profile. The significant amount of usually uncommon terpenes suggests that Colombia's environments may have unique capabilities that allow the plant to express these compounds. Colombia's diverse climates offer enormous cultivation potential, making it a key player in both domestic and international medicinal and recreational C. sativa trade.</p><p><strong>Conclusion: </strong>These findings underscore Colombia's capacity to pioneer global C. sativa production diversification, particularly in South America with new emerging markets.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"246-260"},"PeriodicalIF":3.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142018289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Degradation of andrographolide in Andrographis paniculata over 1 year storage. 穿心莲中的穿心莲内酯在储存一年后的降解情况。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-28 DOI: 10.1002/pca.3441
Md Tanvin Ahammed, Md Zakir Sultan, Md Sabbir Hossain, Mamun Al Mahtab, Sitesh Chandra Bachar

Introduction: Andrographolide is a bioactive component found in the medicinal herb Andrographis paniculata (Burm. f.) Wall. ex Nees (Family-Acanthaceae) is well-known for its ability to cure liver disorders and as a bitter tonic.

Objective: In this study, the rate of degradation of andrographolide was examined over the course of a year of storage.

Materials and methods: New and old (1-year storage) A. paniculata powder samples were used in the study. High-performance liquid chromatography (HPLC) was used to assess the concentration of andrographolide after its extraction using ethanol as the solvent.

Results: The findings demonstrated a 69.26% progressive deterioration of andrographolide over the storage period. Temperature and crystallinity are two factors that affect how quickly andrographolide degrades.

Conclusion: The results emphasize how crucial it is to retain the effectiveness of A. paniculata extract by avoiding prolonged storage or by providing ideal storage conditions.

简介:穿心莲内酯是一种生物活性成分,存在于穿心莲(穿心莲科)药草穿心莲(Burm:本研究对穿心莲内酯在一年储存过程中的降解率进行了检测:研究使用了新旧(储存 1 年)穿心莲内酯粉末样品。以乙醇为溶剂提取穿心莲内酯后,使用高效液相色谱法(HPLC)评估穿心莲内酯的浓度:研究结果表明,穿心莲内酯在贮藏期间会逐渐变质 69.26%。温度和结晶度是影响穿心莲内酯降解速度的两个因素:结果强调了通过避免长时间储存或提供理想的储存条件来保持穿心莲内酯提取物功效的重要性。
{"title":"Degradation of andrographolide in Andrographis paniculata over 1 year storage.","authors":"Md Tanvin Ahammed, Md Zakir Sultan, Md Sabbir Hossain, Mamun Al Mahtab, Sitesh Chandra Bachar","doi":"10.1002/pca.3441","DOIUrl":"10.1002/pca.3441","url":null,"abstract":"<p><strong>Introduction: </strong>Andrographolide is a bioactive component found in the medicinal herb Andrographis paniculata (Burm. f.) Wall. ex Nees (Family-Acanthaceae) is well-known for its ability to cure liver disorders and as a bitter tonic.</p><p><strong>Objective: </strong>In this study, the rate of degradation of andrographolide was examined over the course of a year of storage.</p><p><strong>Materials and methods: </strong>New and old (1-year storage) A. paniculata powder samples were used in the study. High-performance liquid chromatography (HPLC) was used to assess the concentration of andrographolide after its extraction using ethanol as the solvent.</p><p><strong>Results: </strong>The findings demonstrated a 69.26% progressive deterioration of andrographolide over the storage period. Temperature and crystallinity are two factors that affect how quickly andrographolide degrades.</p><p><strong>Conclusion: </strong>The results emphasize how crucial it is to retain the effectiveness of A. paniculata extract by avoiding prolonged storage or by providing ideal storage conditions.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":" ","pages":"289-295"},"PeriodicalIF":3.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142110844","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolomics-based profiling of five Salvia L. (Lamiaceae) species using untargeted data analysis workflow. 利用非目标数据分析工作流程,对五种丹参进行基于代谢组学的分析。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-07-14 DOI: 10.1002/pca.3423
Navaz Kharazian, Farzaneh Jafari Dehkordi, Chun-Lei Xiang

Introduction: The genus Salvia L., a member of the family Lamiaceae, is a keystone genus with a wide range of medicinal properties. It possesses a rich metabolite source that has long been used to treat different disorders.

Objectives: Due to a deficiency of untargeted metabolomic profiling in the genus Salvia, this work attempts to investigate a comprehensive mass spectral library matching, computational data annotations, exclusive biomarkers, specific chemotypes, intraspecific metabolite profile variation, and metabolite enrichment by a case study of five medicinal species of Salvia.

Material and methods: Aerial parts of each species were subjected to QTRAP liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis workflow based on untargeted metabolites. A comprehensive and multivariate analysis was acquired on the metabolite dataset utilizing MetaboAnalyst 6.0 and the Global Natural Products Social Molecular Networking (GNPS) Web Platform.

Results: The untargeted approach empowered the identification of 117 metabolites by library matching and 92 nodes annotated by automated matching. A machine learning algorithm as substructural topic modeling, MS2LDA, was further implemented to explore the metabolite substructures, resulting in four Mass2Motifs. The automated library newly discovered a total of 23 metabolites. In addition, 87 verified biomarkers of library matching, 58 biomarkers of GNPS annotations, and 11 specific chemotypes were screened.

Conclusion: Integrative spectral library matching and automated annotation by the GNPS platform provide comprehensive metabolite profiling through a workflow. In addition, QTRAP LC-MS/MS with multivariate analysis unveiled reliable information about inter and intraspecific levels of differentiation. The rigorous investigation of metabolite profiling presents a large-scale overview and new insights for chemotaxonomy and pharmaceutical studies.

简介丹参属(Salvia L.)是唇形科(Lamiaceae)丹参属(Salvia L.)的一个重要属种,具有广泛的药用价值。它拥有丰富的代谢物来源,长期以来一直被用于治疗不同的疾病:由于丹参属植物缺乏无针对性的代谢组学分析,本研究试图通过对五种丹参药用植物的个案研究,研究全面的质谱库匹配、计算数据注释、专属生物标记物、特异化学型、种内代谢物谱差异以及代谢物富集:根据非目标代谢物对每个物种的气生部分进行 QTRAP 液相色谱-串联质谱(LC-MS/MS)分析工作流程。利用 MetaboAnalyst 6.0 和全球天然产品社会分子网络(GNPS)网络平台对代谢物数据集进行了全面的多变量分析:非目标方法通过库匹配鉴定了 117 种代谢物,通过自动匹配注释了 92 个节点。为了探索代谢物的子结构,进一步实施了一种作为子结构主题建模的机器学习算法--MS2LDA,从而产生了4个Mass2Motifs。自动库共新发现了 23 种代谢物。此外,还筛选出 87 个经过验证的库匹配生物标志物、58 个 GNPS 注释生物标志物和 11 个特定化学型:结论:GNPS 平台的光谱库匹配和自动注释功能通过工作流程提供了全面的代谢物分析。此外,QTRAP LC-MS/MS 多变量分析揭示了种间和种内分化水平的可靠信息。代谢物分析的严格研究为化学分类学和药物研究提供了大规模的概览和新的见解。
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引用次数: 0
HerbMet: Enhancing metabolomics data analysis for accurate identification of Chinese herbal medicines using deep learning. HerbMet:利用深度学习加强代谢组学数据分析,准确识别中药材。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-01 Epub Date: 2024-08-21 DOI: 10.1002/pca.3437
Yuyang Sha, Meiting Jiang, Gang Luo, Weiyu Meng, Xiaobing Zhai, Hongxin Pan, Junrong Li, Yan Yan, Yongkang Qiao, Wenzhi Yang, Kefeng Li

Introduction: Chinese herbal medicines have been utilized for thousands of years to prevent and treat diseases. Accurate identification is crucial since their medicinal effects vary between species and varieties. Metabolomics is a promising approach to distinguish herbs. However, current metabolomics data analysis and modeling in Chinese herbal medicines are limited by small sample sizes, high dimensionality, and overfitting.

Objectives: This study aims to use metabolomics data to develop HerbMet, a high-performance artificial intelligence system for accurately identifying Chinese herbal medicines, particularly those from different species of the same genus.

Methods: We propose HerbMet, an AI-based system for accurately identifying Chinese herbal medicines. HerbMet employs a 1D-ResNet architecture to extract discriminative features from input samples and uses a multilayer perceptron for classification. Additionally, we design the double dropout regularization module to alleviate overfitting and improve model's performance.

Results: Compared to 10 commonly used machine learning and deep learning methods, HerbMet achieves superior accuracy and robustness, with an accuracy of 0.9571 and an F1-score of 0.9542 for distinguishing seven similar Panax ginseng species. After feature selection by 25 different feature ranking techniques in combination with prior knowledge, we obtained 100% accuracy and an F1-score for discriminating P. ginseng species. Furthermore, HerbMet exhibits acceptable inference speed and computational costs compared to existing approaches on both CPU and GPU.

Conclusions: HerbMet surpasses existing solutions for identifying Chinese herbal medicines species. It is simple to use in real-world scenarios, eliminating the need for feature ranking and selection in classical machine learning-based methods.

简介几千年来,人们一直利用中草药来预防和治疗疾病。由于中草药的药效因品种和种类而异,因此准确鉴别至关重要。代谢组学是区分中草药的一种很有前景的方法。然而,目前中药材的代谢组学数据分析和建模受到样本量小、维度高和过度拟合的限制:本研究旨在利用代谢组学数据开发高性能人工智能系统 HerbMet,用于准确识别中药材,尤其是同属不同种的中药材:我们提出了基于人工智能的中药材精准鉴定系统 HerbMet。HerbMet 采用 1D-ResNet 架构从输入样本中提取鉴别特征,并使用多层感知器进行分类。此外,我们还设计了双 dropout 正则化模块,以减轻过拟合,提高模型性能:与 10 种常用的机器学习和深度学习方法相比,HerbMet 的准确性和鲁棒性更胜一筹,在区分 7 种相似的三七时,准确率为 0.9571,F1 分数为 0.9542。通过 25 种不同的特征排序技术并结合先验知识进行特征选择后,我们获得了 100% 的准确率和 F1 分数。此外,与CPU和GPU上的现有方法相比,HerbMet的推理速度和计算成本都是可以接受的:结论:HerbMet 超越了现有的中药材品种识别解决方案。结论:HerbMet 超越了现有的中药材品种识别解决方案,它在现实世界中使用简单,省去了基于机器学习的经典方法中的特征排序和选择。
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引用次数: 0
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Phytochemical Analysis
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