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Three-dimensional spectrochromatographic determination of chlorogenic acid in Melampyrum stenophyllum Boiss. extracts by parallel factor analysis. 通过平行因子分析三维光谱色谱法测定黄花梨提取物中的绿原酸
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-09-02 DOI: 10.1002/pca.3439
Zehra Ceren Ertekin, Ayşegül Köroğlu, Erdal Dinç

Introduction: Co-elution is a common challenge in phytochemical chromatography. Full chromatographic separation often requires extensive optimization, long analysis times, and excessive solvent use. A viable alternative could be mathematical elution of analytes using three-dimensional decomposition.

Objectives: This study aimed to develop a method to determine chlorogenic acid in Melampyrum stenophyllum Boiss. extracts without complete chromatographic separation, to validate the method, and to cross-validate assay results against a classical ultra-performance liquid chromatography (UPLC) method.

Methodology: Ultra-performance liquid chromatography-photodiode array (UPLC-PDA) spectrochromatograms were arranged into a three-way data cube with dimensions of time, wavelength, and sample and then decomposed using parallel factor analysis to reveal chromatographic, spectral, and concentration profiles. The chromatographic and spectral profiles were used to identify chlorogenic acid in overlapping signals. The relative concentration profile was used to quantify it in the plant extract. The assay results were statistically compared with those from an in-house classical UPLC method.

Results: Chlorogenic acid was co-eluted at 1.45 min and quantified as 16.11 mg per gram dry weight of Melampyrum stenophyllum extracts (SD = 0.28), despite significant interference in a 4-min runtime. The analytical validity was confirmed by recovery calculations from standard solutions and standard addition samples (RSD < 2%), and the t-test resulted in a p-value of 0.09 (α = 0.05), indicating no significant difference between the results obtained from mathematical elution and chromatographic separation.

Conclusion: Chlorogenic acid was quantified from plant material accurately despite the co-elution. Validation and cross-validation results support the method's applicability.

简介:共洗脱是植物化学色谱中常见的难题。完全的色谱分离往往需要大量的优化工作、较长的分析时间和过量的溶剂使用。一种可行的替代方法是利用三维分解法对分析物进行数学洗脱:本研究旨在开发一种无需完全色谱分离即可测定叶枯素提取物中绿原酸含量的方法,验证该方法的有效性,并将测定结果与经典的超高效液相色谱(UPLC)方法进行交叉验证:方法:将超高效液相色谱-光电二极管阵列(UPLC-PDA)光谱色谱图排列成以时间、波长和样品为维度的三维数据立方体,然后使用并行因子分析法进行分解,以揭示色谱、光谱和浓度曲线。色谱和光谱图谱用于识别重叠信号中的绿原酸。相对浓度曲线用于量化植物提取物中的绿原酸。检测结果与内部经典 UPLC 方法的结果进行了统计比较:结果:绿原酸在 1.45 分钟时发生共沉淀,定量为每克干重 16.11 毫克(SD = 0.28),尽管在 4 分钟的运行时间内存在明显干扰。标准溶液和标准添加样品的回收率计算(RSD 结论)证实了分析的有效性:尽管存在共洗脱现象,绿原酸仍能从植物材料中准确定量。验证和交叉验证结果支持该方法的适用性。
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引用次数: 0
Rapid mitragynine quantification and fingerprinting of products from Mitragyna speciosa Korth. leaf (Kratom) using high-performance thin-layer chromatography. 利用高效薄层色谱法对桔梗叶(Mitragyna speciosa Korth.
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-28 DOI: 10.1002/pca.3442
Toveelah Hayeema, Juraithip Wungsintaweekul

Introduction: Kratom (leaves from Mitragyna speciosa Korth.; Rubiaceae) is a herbal medicine known for its analgesic properties and psychoactive effects. Kratom in Thailand is currently legal; however, it is prohibited in some countries and considered a narcotic plant.

Objective: Our aim was to establish a reliable, simple, and rapid method for quantifying mitragynine in Kratom leaves and related products through a combination of high-performance thin-layer chromatography (HPTLC) and densitometry.

Methodology: A densitometric HPTLC method was developed and validated in terms of specificity, linearity, limit of detection (LOD), limit of quantification (LOQ), accuracy, precision, and robustness. The fingerprints of kratom leaves, Mitragyna spp., and related products were constructed.

Results: For HPTLC, samples were applied to silica gel 60 F254 plates, and the mobile phase comprised n-hexane, ethyl acetate, and triethylamine (1:1:0.15, v/v/v). Densitometric detection was carried out under ultraviolet light at a wavelength of 226 nm. The validated method exhibited a range of 14.31-143.10 μg/mL, yielding a correlation coefficient of 0.9993. Spiked recovery rates were within a range of 98.3%-100.9%, and the LOD and LOQ were 3.80 and 11.53 μg/mL, respectively. Kratom samples were analyzed with the developed method, and the correlation coefficient was 0.9641, compared to the high-performance liquid chromatography-diode-array detection (HPLC-DAD) method. The HPTLC fingerprints displayed a distinctive pattern, facilitating discrimination among different plant parts and Mitragyna spp.

Conclusion: The established method offers the advantages of simplicity, ease of use, and speed of analysis, serving as a practical alternative for mitragynine quantification in kratom leaf and its related products.

简介:桔梗(Mitragyna speciosa Korth.的叶子;茜草科)是一种草药,因其镇痛特性和精神作用而闻名。桔梗目前在泰国是合法的,但在一些国家被禁止使用,并被视为一种麻醉植物:我们的目的是建立一种可靠、简单、快速的方法,通过结合使用高效薄层色谱法(HPTLC)和密度测量法,对桔梗叶和相关产品中的米曲宁进行定量分析:开发了一种密度计 HPTLC 方法,并在特异性、线性、检出限 (LOD)、定量限 (LOQ)、准确度、精密度和稳健性方面进行了验证。构建了桔梗叶、桔梗属植物和相关产品的指纹图谱:HPTLC 采用硅胶 60 F254 薄层板,流动相为正己烷、乙酸乙酯和三乙胺(1:1:0.15, v/v/v)。在波长为 226 nm 的紫外光下进行密度检测。验证方法的检测范围为 14.31-143.10 μg/mL,相关系数为 0.9993。加标回收率为98.3%-100.9%,最低检出限(LOD)和最低定量限(LOQ)分别为3.80和11.53 μg/mL。采用所开发的方法对桔梗样品进行分析,与高效液相色谱-二极管阵列检测法(HPLC-DAD)相比,相关系数为0.9641。HPTLC指纹图谱显示出独特的模式,有助于区分不同的植物部位和密陀僧属植物:所建立的方法具有简单、易用和分析速度快等优点,是对桔梗叶及其相关产品中的丝氨酸进行定量分析的实用替代方法。
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引用次数: 0
Degradation of andrographolide in Andrographis paniculata over 1 year storage. 穿心莲中的穿心莲内酯在储存一年后的降解情况。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-28 DOI: 10.1002/pca.3441
Md Tanvin Ahammed, Md Zakir Sultan, Md Sabbir Hossain, Mamun Al Mahtab, Sitesh Chandra Bachar

Introduction: Andrographolide is a bioactive component found in the medicinal herb Andrographis paniculata (Burm. f.) Wall. ex Nees (Family-Acanthaceae) is well-known for its ability to cure liver disorders and as a bitter tonic.

Objective: In this study, the rate of degradation of andrographolide was examined over the course of a year of storage.

Materials and methods: New and old (1-year storage) A. paniculata powder samples were used in the study. High-performance liquid chromatography (HPLC) was used to assess the concentration of andrographolide after its extraction using ethanol as the solvent.

Results: The findings demonstrated a 69.26% progressive deterioration of andrographolide over the storage period. Temperature and crystallinity are two factors that affect how quickly andrographolide degrades.

Conclusion: The results emphasize how crucial it is to retain the effectiveness of A. paniculata extract by avoiding prolonged storage or by providing ideal storage conditions.

简介:穿心莲内酯是一种生物活性成分,存在于穿心莲(穿心莲科)药草穿心莲(Burm:本研究对穿心莲内酯在一年储存过程中的降解率进行了检测:研究使用了新旧(储存 1 年)穿心莲内酯粉末样品。以乙醇为溶剂提取穿心莲内酯后,使用高效液相色谱法(HPLC)评估穿心莲内酯的浓度:研究结果表明,穿心莲内酯在贮藏期间会逐渐变质 69.26%。温度和结晶度是影响穿心莲内酯降解速度的两个因素:结果强调了通过避免长时间储存或提供理想的储存条件来保持穿心莲内酯提取物功效的重要性。
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引用次数: 0
Separation of astragaloside IV from Astragalus membranaceus based on high-speed countercurrent chromatography in continuous injection mode. 基于高速逆流色谱连续进样模式分离黄芪中的黄芪皂苷 IV
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-26 DOI: 10.1002/pca.3438
Yin-Di Zhao, Qian-Xia Su, Ning-Li Wang, Dong Pei, Xin-Yi Huang

Introduction: Astragaloside IV (AS-IV) is an index for the quality evaluation of the traditional Chinese medicine Astragalus and an important material basis for Astragalus to exert its medicinal effects, and it is difficult to obtain a single AS-IV by ordinary separation methods.

Objective: To find a new isolation method that can prepare AS-IV quickly and efficiently.

Methodology: AS-IV was isolated from Astragalus membranaceus extract by high-speed countercurrent chromatography using a two-phase solvent system consisting of ethyl acetate/n-butanol/water (4.2:0.8:5, v/v) at a speed of 950 rpm at a flow rate of 2 mL/min using one of the high-speed countercurrent chromatographic sequential injection models developed during the previous study.

Results: Compared with the common countercurrent chromatographic separation, this separation method increased the injection volume and yield by 4-fold and 4.47-fold, respectively, with only about 1.2-fold increase in solvent consumption and separation time, and the purity was basically not reduced, and 55.9 mg of AS-IV, with a purity of 96.95%, was finally prepared from 400 mg of the crude extract in 240 min.

Conclusion: The continuous injection mode of high-speed countercurrent chromatography was able to successfully prepare a large amount of AS-IV with high purity at one time.

引言黄芪皂苷IV(AS-IV)是评价中药黄芪质量的一项指标,也是黄芪发挥药效的重要物质基础,而普通的分离方法很难获得单一的AS-IV:方法:从黄芪中分离出 AS-IV:从黄芪提取物中采用高速逆流色谱法分离AS-IV,使用的溶剂系统为乙酸乙酯/正丁醇/水(4.2:0.8:5, v/v),流速为2 mL/min,转速为950 rpm:结果:与普通逆流色谱分离相比,该分离方法的进样量和收率分别提高了4倍和4.47倍,而溶剂消耗量和分离时间仅增加了约1.2倍,纯度基本没有降低,400 mg粗提物在240 min内最终制备出55.9 mg AS-IV,纯度为96.95%:结论:高速逆流色谱的连续进样模式能够一次性成功制备大量高纯度的 AS-IV。
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引用次数: 0
Development of phytotherapeutic nanoformulation containing Gypsophila eriocalyx and its evaluation as a candidate formulation for osteoporosis treatment on human bone marrow stem cells. 开发含有糜棱草的植物治疗纳米制剂,并将其作为治疗骨质疏松症的候选制剂对人类骨髓干细胞进行评估。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-26 DOI: 10.1002/pca.3440
Sibel Kaymak, Ozan Baris Kurtur, Bahar Gok, Yasemin Budama-Kilinc, Serda Kecel-Gunduz, Ebru Özdemir Nath, Murat Kartal

Introduction: Osteoporosis, one of the common bone diseases, manifests itself as a decrease in bone mass. Recently, the use of medicinal plants in the search for effective and low-toxicity therapeutics for the prevention or treatment of osteoporosis has become a trending topic.

Objective: In this study, we aim to prepare a controlled drug carrier system loaded with Gypsophila eriocalyx to determine its potential for anti-osteoporosis applications.

Methods: Gypsophila eriocalyx extract (GEE) was prepared, and components were determined. The molecular interactions of the components with Cathepsin K (CatK), which is used as a target in drug development against osteoporosis, were revealed by in silico molecular docking and MD methods. ADMET profiles were also examined. GEE-loaded chitosan nanoparticles (CNPs) were synthesized. The nanoparticles' morphology, encapsulation efficiency, loading capacity, release profile, average size, polydispersity index, and zeta potentials were determined. The cytotoxic effects of GEE and GEE-loaded CNPs on the L929 and osteogenic proliferation profiles on human bone marrow stem cells (hBMC) were examined.

Results: The MD analysis revealed no breaks or atomic changes in the dynamic system, and the docking analysis confirmed the continued interaction of identical residues. It was determined that the GEE-loaded CNP formulation was produced successfully, had no toxic effect on the L929, and had an osteogenic proliferation effect on hBMC.

Conclusion: In line with the in vitro and in silico results obtained, it was evaluated that GEE-loaded CNPs can be used as a controlled drug release system as a candidate formulation with phytotherapeutic properties for osteoporosis treatment.q1.

导言骨质疏松症是常见的骨科疾病之一,表现为骨量减少。最近,利用药用植物寻找预防或治疗骨质疏松症的有效低毒疗法已成为一个热门话题:在本研究中,我们旨在制备一种装载有麦饭石的可控药物载体系统,以确定其在抗骨质疏松症方面的应用潜力:方法:制备麦角石膏提取物(GEE)并测定其成分。通过分子对接和 MD 方法揭示了这些成分与 Cathepsin K(CatK)的分子相互作用,CatK 是骨质疏松症药物开发中的一个靶点。此外,还研究了 ADMET 特性。合成了负载 GEE 的壳聚糖纳米颗粒(CNPs)。测定了纳米颗粒的形态、包封效率、负载能力、释放曲线、平均粒径、多分散指数和 zeta 电位。研究了 GEE 和 GEE 负载 CNPs 对 L929 细胞和人骨髓干细胞(hBMC)成骨增殖曲线的细胞毒性效应:MD 分析显示动态系统中没有断裂或原子变化,对接分析证实相同残基继续相互作用。结果:MD 分析表明,动态体系中的原子没有发生断裂,对接分析证实了相同残基之间的持续相互作用。结果表明,GEE 负载 CNP 制剂生产成功,对 L929 没有毒性作用,对 hBMC 具有成骨增殖作用:根据所获得的体外和硅学结果,评估认为 GEE 负载 CNP 可用作药物控释系统,作为具有植物治疗特性的候选制剂用于骨质疏松症治疗。
{"title":"Development of phytotherapeutic nanoformulation containing Gypsophila eriocalyx and its evaluation as a candidate formulation for osteoporosis treatment on human bone marrow stem cells.","authors":"Sibel Kaymak, Ozan Baris Kurtur, Bahar Gok, Yasemin Budama-Kilinc, Serda Kecel-Gunduz, Ebru Özdemir Nath, Murat Kartal","doi":"10.1002/pca.3440","DOIUrl":"https://doi.org/10.1002/pca.3440","url":null,"abstract":"<p><strong>Introduction: </strong>Osteoporosis, one of the common bone diseases, manifests itself as a decrease in bone mass. Recently, the use of medicinal plants in the search for effective and low-toxicity therapeutics for the prevention or treatment of osteoporosis has become a trending topic.</p><p><strong>Objective: </strong>In this study, we aim to prepare a controlled drug carrier system loaded with Gypsophila eriocalyx to determine its potential for anti-osteoporosis applications.</p><p><strong>Methods: </strong>Gypsophila eriocalyx extract (GEE) was prepared, and components were determined. The molecular interactions of the components with Cathepsin K (CatK), which is used as a target in drug development against osteoporosis, were revealed by in silico molecular docking and MD methods. ADMET profiles were also examined. GEE-loaded chitosan nanoparticles (CNPs) were synthesized. The nanoparticles' morphology, encapsulation efficiency, loading capacity, release profile, average size, polydispersity index, and zeta potentials were determined. The cytotoxic effects of GEE and GEE-loaded CNPs on the L929 and osteogenic proliferation profiles on human bone marrow stem cells (hBMC) were examined.</p><p><strong>Results: </strong>The MD analysis revealed no breaks or atomic changes in the dynamic system, and the docking analysis confirmed the continued interaction of identical residues. It was determined that the GEE-loaded CNP formulation was produced successfully, had no toxic effect on the L929, and had an osteogenic proliferation effect on hBMC.</p><p><strong>Conclusion: </strong>In line with the in vitro and in silico results obtained, it was evaluated that GEE-loaded CNPs can be used as a controlled drug release system as a candidate formulation with phytotherapeutic properties for osteoporosis treatment.q1.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142073471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unveiling Colombia's medicinal Cannabis sativa treasure trove: Phenotypic and Chemotypic diversity in legal cultivation. 揭开哥伦比亚药用大麻宝库的神秘面纱:合法种植中的表型和化学型多样性。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-21 DOI: 10.1002/pca.3436
Diego J Enríquez, Julio C Alonso, Lucas Hille, Stefan Brand, Ulrike Holzgrabe, Daniela Vergara, Guillermo Montoya, Yesid A Ramírez

Introduction: Cannabis sativa is a highly versatile plant with a long history of cultivation and domestication. It produces multiple compounds that exert distinct and valuable therapeutic effects by modulating diverse biological systems, including the endocannabinoid system (ECS). Access to standardized, metabolically diverse, and reproducible C. sativa chemotypes and chemovars is essential for physicians to optimize individualized patient treatment and for industries to conduct drug-discovery campaigns.

Objective: This study aimed to characterize and assess the phytochemical diversity of C. sativa chemotypes in diverse ecological regions of Colombia, South America.

Methodology: Ten cannabinoids and 23 terpenes were measured using liquid and gas chromatography, in addition to other phenotypic traits, in 156 C. sativa plants that were grown in diverse ecological regions in Colombia, a hotspot for global biodiversity.

Results: Our results reveal significant phytochemical diversity in Colombian-grown C. sativa plants, with four distinct chemotypes based on cannabinoid profile. The significant amount of usually uncommon terpenes suggests that Colombia's environments may have unique capabilities that allow the plant to express these compounds. Colombia's diverse climates offer enormous cultivation potential, making it a key player in both domestic and international medicinal and recreational C. sativa trade.

Conclusion: These findings underscore Colombia's capacity to pioneer global C. sativa production diversification, particularly in South America with new emerging markets.

简介大麻是一种用途广泛的植物,其种植和驯化历史悠久。它能产生多种化合物,通过调节不同的生物系统(包括内源性大麻素系统 (ECS))发挥独特而有价值的治疗效果。获得标准化、代谢多样化和可重现的 C. sativa 化学型和化学变种对于医生优化患者的个体化治疗和工业界开展药物发现活动至关重要:本研究旨在描述和评估南美洲哥伦比亚不同生态区域 C. sativa 化学型的植物化学多样性:除其他表型特征外,还使用液相和气相色谱法测量了生长在全球生物多样性热点地区哥伦比亚不同生态区域的 156 株 C. sativa 植物中的 10 种大麻素和 23 种萜类化合物:结果:我们的研究结果表明,哥伦比亚种植的 C. sativa 植物具有显著的植物化学多样性,根据大麻素特征可分为四种不同的化学类型。大量通常不常见的萜类化合物表明,哥伦比亚的环境可能具有独特的能力,允许植物表达这些化合物。哥伦比亚多样的气候条件提供了巨大的种植潜力,使其成为国内外药用和娱乐大麻贸易的重要参与者:这些发现强调了哥伦比亚开拓全球茄科植物生产多样化的能力,尤其是在拥有新兴市场的南美洲。
{"title":"Unveiling Colombia's medicinal Cannabis sativa treasure trove: Phenotypic and Chemotypic diversity in legal cultivation.","authors":"Diego J Enríquez, Julio C Alonso, Lucas Hille, Stefan Brand, Ulrike Holzgrabe, Daniela Vergara, Guillermo Montoya, Yesid A Ramírez","doi":"10.1002/pca.3436","DOIUrl":"https://doi.org/10.1002/pca.3436","url":null,"abstract":"<p><strong>Introduction: </strong>Cannabis sativa is a highly versatile plant with a long history of cultivation and domestication. It produces multiple compounds that exert distinct and valuable therapeutic effects by modulating diverse biological systems, including the endocannabinoid system (ECS). Access to standardized, metabolically diverse, and reproducible C. sativa chemotypes and chemovars is essential for physicians to optimize individualized patient treatment and for industries to conduct drug-discovery campaigns.</p><p><strong>Objective: </strong>This study aimed to characterize and assess the phytochemical diversity of C. sativa chemotypes in diverse ecological regions of Colombia, South America.</p><p><strong>Methodology: </strong>Ten cannabinoids and 23 terpenes were measured using liquid and gas chromatography, in addition to other phenotypic traits, in 156 C. sativa plants that were grown in diverse ecological regions in Colombia, a hotspot for global biodiversity.</p><p><strong>Results: </strong>Our results reveal significant phytochemical diversity in Colombian-grown C. sativa plants, with four distinct chemotypes based on cannabinoid profile. The significant amount of usually uncommon terpenes suggests that Colombia's environments may have unique capabilities that allow the plant to express these compounds. Colombia's diverse climates offer enormous cultivation potential, making it a key player in both domestic and international medicinal and recreational C. sativa trade.</p><p><strong>Conclusion: </strong>These findings underscore Colombia's capacity to pioneer global C. sativa production diversification, particularly in South America with new emerging markets.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142018289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
HerbMet: Enhancing metabolomics data analysis for accurate identification of Chinese herbal medicines using deep learning. HerbMet:利用深度学习加强代谢组学数据分析,准确识别中药材。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-21 DOI: 10.1002/pca.3437
Yuyang Sha, Meiting Jiang, Gang Luo, Weiyu Meng, Xiaobing Zhai, Hongxin Pan, Junrong Li, Yan Yan, Yongkang Qiao, Wenzhi Yang, Kefeng Li

Introduction: Chinese herbal medicines have been utilized for thousands of years to prevent and treat diseases. Accurate identification is crucial since their medicinal effects vary between species and varieties. Metabolomics is a promising approach to distinguish herbs. However, current metabolomics data analysis and modeling in Chinese herbal medicines are limited by small sample sizes, high dimensionality, and overfitting.

Objectives: This study aims to use metabolomics data to develop HerbMet, a high-performance artificial intelligence system for accurately identifying Chinese herbal medicines, particularly those from different species of the same genus.

Methods: We propose HerbMet, an AI-based system for accurately identifying Chinese herbal medicines. HerbMet employs a 1D-ResNet architecture to extract discriminative features from input samples and uses a multilayer perceptron for classification. Additionally, we design the double dropout regularization module to alleviate overfitting and improve model's performance.

Results: Compared to 10 commonly used machine learning and deep learning methods, HerbMet achieves superior accuracy and robustness, with an accuracy of 0.9571 and an F1-score of 0.9542 for distinguishing seven similar Panax ginseng species. After feature selection by 25 different feature ranking techniques in combination with prior knowledge, we obtained 100% accuracy and an F1-score for discriminating P. ginseng species. Furthermore, HerbMet exhibits acceptable inference speed and computational costs compared to existing approaches on both CPU and GPU.

Conclusions: HerbMet surpasses existing solutions for identifying Chinese herbal medicines species. It is simple to use in real-world scenarios, eliminating the need for feature ranking and selection in classical machine learning-based methods.

简介几千年来,人们一直利用中草药来预防和治疗疾病。由于中草药的药效因品种和种类而异,因此准确鉴别至关重要。代谢组学是区分中草药的一种很有前景的方法。然而,目前中药材的代谢组学数据分析和建模受到样本量小、维度高和过度拟合的限制:本研究旨在利用代谢组学数据开发高性能人工智能系统 HerbMet,用于准确识别中药材,尤其是同属不同种的中药材:我们提出了基于人工智能的中药材精准鉴定系统 HerbMet。HerbMet 采用 1D-ResNet 架构从输入样本中提取鉴别特征,并使用多层感知器进行分类。此外,我们还设计了双 dropout 正则化模块,以减轻过拟合,提高模型性能:与 10 种常用的机器学习和深度学习方法相比,HerbMet 的准确性和鲁棒性更胜一筹,在区分 7 种相似的三七时,准确率为 0.9571,F1 分数为 0.9542。通过 25 种不同的特征排序技术并结合先验知识进行特征选择后,我们获得了 100% 的准确率和 F1 分数。此外,与CPU和GPU上的现有方法相比,HerbMet的推理速度和计算成本都是可以接受的:结论:HerbMet 超越了现有的中药材品种识别解决方案。结论:HerbMet 超越了现有的中药材品种识别解决方案,它在现实世界中使用简单,省去了基于机器学习的经典方法中的特征排序和选择。
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引用次数: 0
Comprehensive phytochemical profiling of Phyllanthus emblica L. flowers on UHPLC/MS quadrupole time of flight, HPTLC, HPLC, and NMR analytical platforms reveals functional metabolites with potent anti-inflammatory effects in human (THP-1) macrophages. 在超高效液相色谱/质谱四极杆飞行时间、高效液相色谱、高效液相色谱和核磁共振分析平台上对余甘子花进行了全面的植物化学分析,发现了在人类(THP-1)巨噬细胞中具有强效抗炎作用的功能代谢物。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-19 DOI: 10.1002/pca.3433
Acharya Balkrishna, Sudeep Verma, Priya Rani M, Monali Joshi, Meenu Tomer, Vivek Gohel, Pardeep Nain, Rishabh Dev, Anurag Varshney

Introduction: Phyllanthus emblica L., renowned for its pharmacological benefits found in its fruits and leaves, has received considerable attention. However, there is a notable lack of research on its flowers, specifically on metabolite profiling and pharmacological activity.

Objective: The present study aims to delineate the phytochemical constituents of hydromethanolic extract of P. emblica flowers by ultra-high-performance liquid chromatography coupled with quadrupole time of flight mass spectrometry (UHPLC-QToF-MS), high-performance thin layer chromatography (HPTLC), high-performance liquid chromatography (HPLC), infrared and nuclear magnetic resonance spectroscopic methods and subsequent evaluation of its anti-inflammatory potential.

Materials and methods: The identification and characterization of phytochemicals in P. emblica flowers was performed by UHPLC/MS-QToF in both positive and negative ionization modes. Additionally, marker compounds present in flower extract were analyzed using HPTLC, HPLC, FT-IR, and NMR methods. The anti-inflammatory potential was evaluated in lipopolysaccharide-stimulated THP-1 macrophages by evaluating inflammatory biomarkers.

Results: UHPLC/MS-QToF analysis facilitated the identification of 51 compounds from P. emblica flowers including gallic acid derivatives, flavonoid glycosides, and tannins based on their fragmentation patterns and previous literature reports. Notably, the study also identified spermidine compounds for the first time in this species. Optimization of HPTLC and HPLC methods marked the presence of corilagin as major compound followed by FT-IR and NMR spectral methods. Moreover, treatment with hydromethanolic extract of P. emblica flowers resulted in decreased levels of proinflammatory cytokines, TNF-α, IL-1β, and IL-6, alongside modulation of nuclear factor-κB activity in lipopolysaccharide-induced THP-1 macrophages.

Conclusion: Chromatographic techniques in conjunction with spectral methods found robust prevalence in the identification of signature phytometabolites present in P. emblica flowers, which sets the basis for its anti-inflammatory potentials. The studies established a foundation for further exploration of potential applications of P. emblica flowers across various domains.

导言:大叶女贞(Phyllanthus emblica L.)因其果实和叶片的药理作用而闻名于世,受到了广泛关注。然而,对其花的研究,特别是代谢物分析和药理活性方面的研究却明显不足:本研究旨在通过超高效液相色谱-四极杆飞行时间质谱法(UHPLC-QToF-MS)、高效薄层色谱法(HPTLC)、高效液相色谱法(HPLC)、红外光谱法和核磁共振波谱法等方法,鉴定水乙醇提取物中的植物化学成分,并评估其抗炎潜力:采用超高效液相色谱/质谱-QToF正负离子模式鉴定和表征了余甘子花中的植物化学物质。此外,还使用 HPTLC、HPLC、FT-IR 和 NMR 方法分析了花提取物中的标记化合物。通过评估炎症生物标志物,评估了脂多糖刺激的 THP-1 巨噬细胞的抗炎潜力:结果:超高效液相色谱/质谱-QToF分析有助于根据没食子酸衍生物、黄酮苷和单宁酸的片段模式和以前的文献报道,从白花蛇舌草中鉴定出51种化合物。值得注意的是,该研究还首次在该物种中鉴定出了亚精胺化合物。对 HPTLC 和 HPLC 方法的优化表明,柯里拉京是主要化合物,其次是傅立叶变换红外光谱和核磁共振光谱方法。此外,用余甘子花的水乙醇提取物处理可降低促炎细胞因子 TNF-α、IL-1β 和 IL-6 的水平,同时调节脂多糖诱导的 THP-1 巨噬细胞中核因子-κB 的活性:结论:色谱技术与光谱方法相结合发现,在鉴定苦蘵花中存在的特征植物代谢物方面具有很强的普遍性,这为苦蘵花的抗炎潜力奠定了基础。这些研究为进一步探索白花蛇舌草在各个领域的潜在应用奠定了基础。
{"title":"Comprehensive phytochemical profiling of Phyllanthus emblica L. flowers on UHPLC/MS quadrupole time of flight, HPTLC, HPLC, and NMR analytical platforms reveals functional metabolites with potent anti-inflammatory effects in human (THP-1) macrophages.","authors":"Acharya Balkrishna, Sudeep Verma, Priya Rani M, Monali Joshi, Meenu Tomer, Vivek Gohel, Pardeep Nain, Rishabh Dev, Anurag Varshney","doi":"10.1002/pca.3433","DOIUrl":"https://doi.org/10.1002/pca.3433","url":null,"abstract":"<p><strong>Introduction: </strong>Phyllanthus emblica L., renowned for its pharmacological benefits found in its fruits and leaves, has received considerable attention. However, there is a notable lack of research on its flowers, specifically on metabolite profiling and pharmacological activity.</p><p><strong>Objective: </strong>The present study aims to delineate the phytochemical constituents of hydromethanolic extract of P. emblica flowers by ultra-high-performance liquid chromatography coupled with quadrupole time of flight mass spectrometry (UHPLC-QToF-MS), high-performance thin layer chromatography (HPTLC), high-performance liquid chromatography (HPLC), infrared and nuclear magnetic resonance spectroscopic methods and subsequent evaluation of its anti-inflammatory potential.</p><p><strong>Materials and methods: </strong>The identification and characterization of phytochemicals in P. emblica flowers was performed by UHPLC/MS-QToF in both positive and negative ionization modes. Additionally, marker compounds present in flower extract were analyzed using HPTLC, HPLC, FT-IR, and NMR methods. The anti-inflammatory potential was evaluated in lipopolysaccharide-stimulated THP-1 macrophages by evaluating inflammatory biomarkers.</p><p><strong>Results: </strong>UHPLC/MS-QToF analysis facilitated the identification of 51 compounds from P. emblica flowers including gallic acid derivatives, flavonoid glycosides, and tannins based on their fragmentation patterns and previous literature reports. Notably, the study also identified spermidine compounds for the first time in this species. Optimization of HPTLC and HPLC methods marked the presence of corilagin as major compound followed by FT-IR and NMR spectral methods. Moreover, treatment with hydromethanolic extract of P. emblica flowers resulted in decreased levels of proinflammatory cytokines, TNF-α, IL-1β, and IL-6, alongside modulation of nuclear factor-κB activity in lipopolysaccharide-induced THP-1 macrophages.</p><p><strong>Conclusion: </strong>Chromatographic techniques in conjunction with spectral methods found robust prevalence in the identification of signature phytometabolites present in P. emblica flowers, which sets the basis for its anti-inflammatory potentials. The studies established a foundation for further exploration of potential applications of P. emblica flowers across various domains.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142004991","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Developing a recovery process for bioactives from discarded by-products of winemaking industry based on multivariate optimization method: Deep eutectic solvents as eco-friendly extraction media. 基于多元优化方法,开发从酿酒业废弃副产品中回收生物活性物质的工艺:作为生态友好型萃取介质的深共晶溶剂。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-13 DOI: 10.1002/pca.3434
Sena Kavas, Alara Erbaşar, Ebru Kurtulbaş, Serena Fiorito, Selin Şahin

Introduction: The recovery process for bioactives from discarded by-products of the winemaking industry is of great value considering both environmental and economic aspects.

Objective: The goal of this study is to investigate the extraction of phenolic antioxidants from grape (Vitis vinifera) seeds by means of carboxylic acid-based deep eutectic solvents (DESs) in order to propose an environmentally friendly method based on a multivariate optimization approach.

Material and methods: Carboxylic acid-based DESs were designed with several molar ratios (1/1, 1/2, and 2/1). Two polyols (glycerol and ethylene glycol) were used as hydrogen bond donors, while formic acid, acetic acid, and propionic acid were selected as hydrogen bond acceptors. The process parameters (water content, extraction time, and solid mass) were analyzed to optimize the process through Box-Behnken design with response surface method, after determination of the best combination for the highest total phenolic content (TPC) and the antioxidant activity yields.

Results: The maximum TPC yield (153.17 ± 0.003 mg-GAE/g-GS) and antioxidant activity yield (82.26 ± 0.004 mg-GAE/g-GS) were achieved by 50% water addition into the DES (ethylene glycol/acetic acid, 1/1), 85 sec extraction time, and 0.1 g grape seed.

导言:从酿酒业废弃的副产品中回收生物活性物质,从环境和经济两方面考虑都具有重要价值:本研究的目的是通过羧酸基深共晶溶剂(DES)研究从葡萄(葡萄属)种子中提取酚类抗氧化剂的方法,从而提出一种基于多元优化方法的环境友好型方法:设计了几种摩尔比(1/1、1/2 和 2/1)的羧酸基 DES。采用两种多元醇(甘油和乙二醇)作为氢键供体,甲酸、乙酸和丙酸作为氢键受体。在确定总酚含量(TPC)和抗氧化活性产率最高的最佳组合后,采用响应面法对工艺参数(含水量、萃取时间和固体质量)进行了分析,以优化工艺:结果:在 DES(乙二醇/乙酸,1/1)中加水 50%、萃取时间 85 秒、葡萄籽 0.1 克的条件下,TPC 产量(153.17 ± 0.003 mg-GAE/g-GS)和抗氧化活性产量(82.26 ± 0.004 mg-GAE/g-GS)最高。
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引用次数: 0
Integrated metabolomic and transcriptomic analysis reveals variation in the metabolites of Dendrobium officinale, Dendrobium huoshanense, Dendrobium nobile. 综合代谢组学和转录组学分析揭示了 officinale 铁皮石斛、 Huoshanense 铁皮石斛和 Dendrobium nobile 铁皮石斛代谢物的变异。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-08-08 DOI: 10.1002/pca.3429
Li Chen, Shuna Duan, Jiahui Huang, Li Hu, Shuping Liu, Qiqian Lan, Gang Wei

Introduction: Dendrobium is a perennial herb of the genus Dendrobium in the orchid family. Generally, Dendrobium officinale (TP) and Dendrobium huoshanense (HS) are both considered to have the function of yin-nourishing, while Dendrobium nobile (JC) has better efficacy of heat-clearing. However, because of the wide variety of Dendrobium species, the classification and clinical application of Dendrobium are often confused clearly distinguished in different medicinal uses.

Objective: In order to compare the differentially accumulated metabolites (DAMs) and differentially expressed genes (DEGs) of the three Dendrobium.

Methods: We selected TP, HS, and JC cultivated on stone for metabolomic and transcriptomic analyses between 2 and 3 years.

Results: The results showed that a total of 489 metabolites were obtained, including 72 were DAMs. The 72 DAMs were mainly enriched in metabolic pathways and biosynthesis of secondary metabolites. Transcriptome analysis results showed that 1,038 annotated DEGs were identified among the three Dendrobium species. The comprehensive analysis showed that the three Dendrobium differed in the distribution of the content of four major active components: flavonoids, amino acids, alkaloids, and sugars and alcohols, among which the DAMs and DEGs were mainly enriched in metabolic pathways and secondary metabolite biosynthesis.

Conclusion: In this study, metabolomics and transcriptomics were utilized to compare the differences among the three species of Dendrobium, to provide theoretical references for future research and selection of different species of Dendrobium based on different medicinal uses, and to lay the foundation for further research on the biosynthesis of flavonoids in Dendrobium.

介绍:铁皮石斛是兰科石斛属多年生草本植物。一般认为,铁皮石斛(TP)和霍山石斛(HS)都具有滋阴的作用,而金钗石斛(JC)则具有较好的清热功效。然而,由于铁皮石斛种类繁多,不同药用价值的铁皮石斛在分类和临床应用上往往分不清楚:目的:比较三种铁皮石斛的差异累积代谢物(DAMs)和差异表达基因(DEGs):方法:选取在石材上栽培2至3年的TP、HS和JC进行代谢组和转录组分析:结果表明,共获得 489 个代谢物,其中 72 个为 DAMs。这 72 个 DAMs 主要富集在代谢途径和次生代谢物的生物合成中。转录组分析结果显示,三个铁皮石斛品种共鉴定出 1,038 个注释 DEGs。综合分析表明,三种铁皮石斛在黄酮类、氨基酸、生物碱、糖类和醇类四种主要活性成分的含量分布上存在差异,其中DAMs和DEGs主要富集在代谢途径和次生代谢物的生物合成中:本研究利用代谢组学和转录组学比较了三种铁皮石斛的差异,为今后研究和根据不同药用价值选择不同品种的铁皮石斛提供了理论参考,也为进一步研究铁皮石斛中黄酮类化合物的生物合成奠定了基础。
{"title":"Integrated metabolomic and transcriptomic analysis reveals variation in the metabolites of Dendrobium officinale, Dendrobium huoshanense, Dendrobium nobile.","authors":"Li Chen, Shuna Duan, Jiahui Huang, Li Hu, Shuping Liu, Qiqian Lan, Gang Wei","doi":"10.1002/pca.3429","DOIUrl":"https://doi.org/10.1002/pca.3429","url":null,"abstract":"<p><strong>Introduction: </strong>Dendrobium is a perennial herb of the genus Dendrobium in the orchid family. Generally, Dendrobium officinale (TP) and Dendrobium huoshanense (HS) are both considered to have the function of yin-nourishing, while Dendrobium nobile (JC) has better efficacy of heat-clearing. However, because of the wide variety of Dendrobium species, the classification and clinical application of Dendrobium are often confused clearly distinguished in different medicinal uses.</p><p><strong>Objective: </strong>In order to compare the differentially accumulated metabolites (DAMs) and differentially expressed genes (DEGs) of the three Dendrobium.</p><p><strong>Methods: </strong>We selected TP, HS, and JC cultivated on stone for metabolomic and transcriptomic analyses between 2 and 3 years.</p><p><strong>Results: </strong>The results showed that a total of 489 metabolites were obtained, including 72 were DAMs. The 72 DAMs were mainly enriched in metabolic pathways and biosynthesis of secondary metabolites. Transcriptome analysis results showed that 1,038 annotated DEGs were identified among the three Dendrobium species. The comprehensive analysis showed that the three Dendrobium differed in the distribution of the content of four major active components: flavonoids, amino acids, alkaloids, and sugars and alcohols, among which the DAMs and DEGs were mainly enriched in metabolic pathways and secondary metabolite biosynthesis.</p><p><strong>Conclusion: </strong>In this study, metabolomics and transcriptomics were utilized to compare the differences among the three species of Dendrobium, to provide theoretical references for future research and selection of different species of Dendrobium based on different medicinal uses, and to lay the foundation for further research on the biosynthesis of flavonoids in Dendrobium.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141907365","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Phytochemical Analysis
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