Pub Date : 2023-05-31DOI: 10.1080/00318884.2023.2210490
S. Dudgeon, J. Kübler, B. Beal, R. Steneck
{"title":"ROBERT L. VADAS (5 August 1936–11 February 2023)","authors":"S. Dudgeon, J. Kübler, B. Beal, R. Steneck","doi":"10.1080/00318884.2023.2210490","DOIUrl":"https://doi.org/10.1080/00318884.2023.2210490","url":null,"abstract":"","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44781469","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-05-31DOI: 10.1080/00318884.2023.2210979
Yen-Zhen Tan, Li-Chia Liu, L. Tseng, Showe-Mei Lin
ABSTRACT Sporolithon is a common genus of crustose coralline algae occurring at Taoyuan algal reefs in Northwest Taiwan. However, little is known of the reproductive cycles and growth pattern of the genus in relation to environmental changes. In this study, the asexual and sexual reproductive stages of a dominant species of Sporolithon (Sporolithon sp.) occurring in different seasons were documented in detail for the first time based on collections made from the reefs during 2020–2022. Sexual reproductive structures (spermatangial or carposporangial conceptacles) were found all year round, whereas asexual reproductive structures (tetrasporangial compartments) appeared only in the summer and autumn, when sea surface temperature rose above 25°C. These results suggest that the reproductive cycle of this dominant species of Sporolithon is largely affected by sea surface temperature, which ranged between 13.5 and 31.5°C. Furthermore, the high ratio of sterile thalli found in most seasons suggests that the dominant Sporolithon sp. can thrive in environments having variable temperature by vegetative growth. In addition, almost all old gametophytes of Sporolithon sp. have multiple bands of embedded spermatangial or carposporangial conceptacles (up to six layers), suggesting that Sporolithon sp. is a perennial species. Further investigation into the growth pattern and reproductive cycles for other reef-building crustose coralline species occurring in Taoyuan algal reefs is needed to establish a set of biological baseline data for future conservation plans and guidelines.
{"title":"Reproductive phenology of a dominant crustose coralline alga, Sporolithon sp., from Taoyuan algal reefs in Northwest Taiwan","authors":"Yen-Zhen Tan, Li-Chia Liu, L. Tseng, Showe-Mei Lin","doi":"10.1080/00318884.2023.2210979","DOIUrl":"https://doi.org/10.1080/00318884.2023.2210979","url":null,"abstract":"ABSTRACT Sporolithon is a common genus of crustose coralline algae occurring at Taoyuan algal reefs in Northwest Taiwan. However, little is known of the reproductive cycles and growth pattern of the genus in relation to environmental changes. In this study, the asexual and sexual reproductive stages of a dominant species of Sporolithon (Sporolithon sp.) occurring in different seasons were documented in detail for the first time based on collections made from the reefs during 2020–2022. Sexual reproductive structures (spermatangial or carposporangial conceptacles) were found all year round, whereas asexual reproductive structures (tetrasporangial compartments) appeared only in the summer and autumn, when sea surface temperature rose above 25°C. These results suggest that the reproductive cycle of this dominant species of Sporolithon is largely affected by sea surface temperature, which ranged between 13.5 and 31.5°C. Furthermore, the high ratio of sterile thalli found in most seasons suggests that the dominant Sporolithon sp. can thrive in environments having variable temperature by vegetative growth. In addition, almost all old gametophytes of Sporolithon sp. have multiple bands of embedded spermatangial or carposporangial conceptacles (up to six layers), suggesting that Sporolithon sp. is a perennial species. Further investigation into the growth pattern and reproductive cycles for other reef-building crustose coralline species occurring in Taoyuan algal reefs is needed to establish a set of biological baseline data for future conservation plans and guidelines.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43811551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-05-29DOI: 10.1080/00318884.2023.2202533
Li-Chia Liu, Showe-Mei Lin
ABSTRACT Phymatolithon is a dominant genus in the algal reefs in Northwest Taiwan. In this study, we describe three new species of Phymatolithon, P. fragile sp. nov., P. taiwanense sp. nov. and P. variabile sp. nov., based on morpho-anatomical characters examined with both light and electron microscopy, and DNA sequence analyses. Phymatolithon fragile is only found in northern Taiwan (a subtropical area) and can be separated from the other species from Taiwan based on its thin thallus (<130 µm thick when mature vs >200 µm in other species) and the possession of bisporangia only. Phymatolithon taiwanense and P. variabile are widely distributed in both northern (subtropical) and southern (tropical) Taiwan and can only be distinguished by a combination of characters relating to the sizes of tetrasporangial compartments and the number of cell layers in cortex and medulla. In addition, P. taiwanense and P. variabile are the first two species of Phymatolithon shown to occur in tropical waters. This study suggests that our knowledge of the species diversity of Phymatolithon in tropical regions, particularly in the Indo-Pacific, will increase when more collections are made and analysed by a combination of morphological and molecular approaches.
{"title":"Systematic revision of the non-geniculate coralline genus Phymatolithon (Hapalidiales, Rhodophyta) from Taiwan, including three new species","authors":"Li-Chia Liu, Showe-Mei Lin","doi":"10.1080/00318884.2023.2202533","DOIUrl":"https://doi.org/10.1080/00318884.2023.2202533","url":null,"abstract":"ABSTRACT Phymatolithon is a dominant genus in the algal reefs in Northwest Taiwan. In this study, we describe three new species of Phymatolithon, P. fragile sp. nov., P. taiwanense sp. nov. and P. variabile sp. nov., based on morpho-anatomical characters examined with both light and electron microscopy, and DNA sequence analyses. Phymatolithon fragile is only found in northern Taiwan (a subtropical area) and can be separated from the other species from Taiwan based on its thin thallus (<130 µm thick when mature vs >200 µm in other species) and the possession of bisporangia only. Phymatolithon taiwanense and P. variabile are widely distributed in both northern (subtropical) and southern (tropical) Taiwan and can only be distinguished by a combination of characters relating to the sizes of tetrasporangial compartments and the number of cell layers in cortex and medulla. In addition, P. taiwanense and P. variabile are the first two species of Phymatolithon shown to occur in tropical waters. This study suggests that our knowledge of the species diversity of Phymatolithon in tropical regions, particularly in the Indo-Pacific, will increase when more collections are made and analysed by a combination of morphological and molecular approaches.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46561630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-05-29DOI: 10.1080/00318884.2023.2204681
Koyo Kuwata, Wai Mun Lum, Kazuya Takahashi, Garry Benico, H. Uchida, M. Ozawa, Ryoji Matsushima, Ryuichi Watanabe, H. Oikawa, Toshiyuki Suzuki, M. Iwataki
ABSTRACT The marine thecate dinoflagellate Azadinium includes species known to produce the diarrhetic shellfish toxins known as azaspiracids (AZAs). In this study, the morphology of a thecate dinoflagellate isolated from Mutsu Bay, Japan, was examined by LM and SEM, and its phylogenetic position was inferred from ITS and LSU rDNA sequences. The production of AZAs was examined by liquid chromatography-triple quadrupole mass spectrometer (LC-MS/MS). Cells were elliptical, 15.9–22.4 µm long and 11.1–17.1 µm wide. A chloroplast was positioned peripherally, with a pyrenoid near the cingulum, and the nucleus was placed in the hyposome. The hyposome was smaller than the episome, with an antapical spine on plate 2''''. Thecal tabulation was Po, cp, X, 4', 3a, 6'', 6C, 5S, 6''', 2''''. The apical pore complex consisted of a symmetrical apical pore plate (Po), a cover plate (cp) and a small canal plate (X), and was surrounded by a prominent collar formed by the apical plates. A ventral pore was located on the mid-anterior edge of plate 1' and contacted with the X-plate and/or the ventral left of plate Po. Plate 1'' was in contact with plate 1a. AZA was not detected in the cultures. Molecular phylogeny showed that the species was related to Azadinium species that possess the ventral pore on the left side of plate 1', i.e. A. cuneatum, A. dalianense, A. obesum, A. poporum, A. spinosum and A. trinitatum, but that it was not included in these species. The new species Azadinium anteroporum sp. nov. differs in the ventral pore position (mid-anterior edge of plate 1') from these related species (which have the ventral pore on the left side of plate 1'), and from A. polongum (with ventral pore on the posterior left side of 1') and all other Azadinium species (with ventral pore on the right side of 1').
{"title":"A new small thecate dinoflagellate Azadinium anteroporum sp. nov. (Amphidomataceae, Dinophyceae) isolated from the Asian Pacific","authors":"Koyo Kuwata, Wai Mun Lum, Kazuya Takahashi, Garry Benico, H. Uchida, M. Ozawa, Ryoji Matsushima, Ryuichi Watanabe, H. Oikawa, Toshiyuki Suzuki, M. Iwataki","doi":"10.1080/00318884.2023.2204681","DOIUrl":"https://doi.org/10.1080/00318884.2023.2204681","url":null,"abstract":"ABSTRACT The marine thecate dinoflagellate Azadinium includes species known to produce the diarrhetic shellfish toxins known as azaspiracids (AZAs). In this study, the morphology of a thecate dinoflagellate isolated from Mutsu Bay, Japan, was examined by LM and SEM, and its phylogenetic position was inferred from ITS and LSU rDNA sequences. The production of AZAs was examined by liquid chromatography-triple quadrupole mass spectrometer (LC-MS/MS). Cells were elliptical, 15.9–22.4 µm long and 11.1–17.1 µm wide. A chloroplast was positioned peripherally, with a pyrenoid near the cingulum, and the nucleus was placed in the hyposome. The hyposome was smaller than the episome, with an antapical spine on plate 2''''. Thecal tabulation was Po, cp, X, 4', 3a, 6'', 6C, 5S, 6''', 2''''. The apical pore complex consisted of a symmetrical apical pore plate (Po), a cover plate (cp) and a small canal plate (X), and was surrounded by a prominent collar formed by the apical plates. A ventral pore was located on the mid-anterior edge of plate 1' and contacted with the X-plate and/or the ventral left of plate Po. Plate 1'' was in contact with plate 1a. AZA was not detected in the cultures. Molecular phylogeny showed that the species was related to Azadinium species that possess the ventral pore on the left side of plate 1', i.e. A. cuneatum, A. dalianense, A. obesum, A. poporum, A. spinosum and A. trinitatum, but that it was not included in these species. The new species Azadinium anteroporum sp. nov. differs in the ventral pore position (mid-anterior edge of plate 1') from these related species (which have the ventral pore on the left side of plate 1'), and from A. polongum (with ventral pore on the posterior left side of 1') and all other Azadinium species (with ventral pore on the right side of 1').","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42232669","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-05-24DOI: 10.1080/00318884.2023.2202520
O. Bulut, Çağla Sönmez, H. Öktem
ABSTRACT Oxidative stress damages cellular components and may lead to cell death when it is not effectively counterbalanced by the endogenous antioxidant mechanisms. Exogenous sources of antioxidants are also necessary to cope with high levels of free radicals. Microalgae are rich sources of diverse metabolites with high antioxidant potential. In this study, metabolites of Hindakia tetrachotoma ME03, a green microalga previously isolated from thermal springs in Türkiye, were chemically fractionated using four solvents (ethanol-water, ethyl acetate, hexane and water). The extracts were evaluated for their antioxidant capacities, total phenolics, flavonoids and carotenoids. The highest antioxidant capacity, phenolic and carotenoid contents were obtained in the ethanol-water extracts. The antioxidant capacity in the ethanol-water extracts was measured as 12.42 ± 1.21 μmol Trolox g–1 DW and 67.98 ± 3.45 μmol Trolox g–1 DW by DPPH and FRAP assays, respectively. Twelve different phenolic compounds in the ethanol-water and ethyl acetate extracts were quantified by reverse phase high pressure liquid chromatography. Quercetin and rutin were the most abundant phenolics in the ethanol-water extracts, whereas the ethyl acetate extract was rich in phenolic precursor, benzoic acid. Finally, the cytoprotective effect of ethanol-water extracts of H. tetrachotoma ME03 against H2O2-induced oxidative damage was investigated using an in vitro cell line model of human breast adenocarcinoma (MCF7). Hindakia tetrachotoma ME03 extracts significantly decreased the intracellular reactive oxygen species levels and the percentage of apoptotic and necrotic cells in MCF7 cells. These findings suggest the strong cytoprotective activity of H. tetrachotoma ME03 extracts, which may be conferred by its antioxidative properties.
{"title":"Hindakia tetrachotoma ME03 (Chlorophyta) has high phenolic content, antioxidant capacity, and attenuates H2O2-induced oxidative stress and apoptosis in human cells","authors":"O. Bulut, Çağla Sönmez, H. Öktem","doi":"10.1080/00318884.2023.2202520","DOIUrl":"https://doi.org/10.1080/00318884.2023.2202520","url":null,"abstract":"ABSTRACT Oxidative stress damages cellular components and may lead to cell death when it is not effectively counterbalanced by the endogenous antioxidant mechanisms. Exogenous sources of antioxidants are also necessary to cope with high levels of free radicals. Microalgae are rich sources of diverse metabolites with high antioxidant potential. In this study, metabolites of Hindakia tetrachotoma ME03, a green microalga previously isolated from thermal springs in Türkiye, were chemically fractionated using four solvents (ethanol-water, ethyl acetate, hexane and water). The extracts were evaluated for their antioxidant capacities, total phenolics, flavonoids and carotenoids. The highest antioxidant capacity, phenolic and carotenoid contents were obtained in the ethanol-water extracts. The antioxidant capacity in the ethanol-water extracts was measured as 12.42 ± 1.21 μmol Trolox g–1 DW and 67.98 ± 3.45 μmol Trolox g–1 DW by DPPH and FRAP assays, respectively. Twelve different phenolic compounds in the ethanol-water and ethyl acetate extracts were quantified by reverse phase high pressure liquid chromatography. Quercetin and rutin were the most abundant phenolics in the ethanol-water extracts, whereas the ethyl acetate extract was rich in phenolic precursor, benzoic acid. Finally, the cytoprotective effect of ethanol-water extracts of H. tetrachotoma ME03 against H2O2-induced oxidative damage was investigated using an in vitro cell line model of human breast adenocarcinoma (MCF7). Hindakia tetrachotoma ME03 extracts significantly decreased the intracellular reactive oxygen species levels and the percentage of apoptotic and necrotic cells in MCF7 cells. These findings suggest the strong cytoprotective activity of H. tetrachotoma ME03 extracts, which may be conferred by its antioxidative properties.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44072308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-05-02DOI: 10.1080/00318884.2023.2197636
B. C. V. Narvarte, L. A. R. Hinaloc, Shienna Mae C. Gonzaga, Bea A. Crisostomo, T. G. Genovia, M. Roleda
ABSTRACT Calcified macroalgae are essential components of marine ecosystem, yet much of their physiology remains to be understood. Here, the nutrient (NO3– and PO4–3) uptake physiologies of two branched macroalgae, Actinotrichia fragilis (Nemaliophycidae) and Amphiroa fragilissima (Corallinophycidae), and the non-geniculate rhodolith Sporolithon sp. (Corallinophycidae) were examined. Sporolithon sp. had the lowest uptake rate through time and the three calcified macroalgae had a surge in NO3– and PO4–3 uptake that occurred between 3 and 20 min, with a maximum uptake at 3 min, after which the nutrient uptake rates declined. The NO3– uptake of the three calcified macroalgae followed Michaelis-Menten kinetics. For NO3– uptake, Sporolithon sp. had the lowest Km (2.72 ± 0.97 µM), Vmax (0.08 ± 0.01 µmol gDW–1 h–1), Vmax/Km (0.05 ± 0.03 µmol gDW–1 h–1 µM−1) and α (0.01 ± 0.00 µmol gDW–1 h–1 µM−1), while A. fragilis had the highest Km (12.35 ± 0.71 µM) and Vmax (6.41 ± 0.23 µmol gDW–1 h–1), and A. fragilissima had the highest Vmax/Km (1.52 ± 0.26 µmol gDW–1 h–1 µM−1) and α (0.37 ± 0.01 µmol gDW–1 h–1 µM−1). Moreover, the PO4–3 uptake rate of the three species was faster at higher PO4–3 levels. These differences in species-specific nutrient uptake traits are likely caused by differences in morphology. These traits are important for survival and proliferation of this group of marine organisms, particularly in a nutrient-variable environment.
{"title":"Nitrate and phosphate uptake of morphologically distinct calcified macroalgae","authors":"B. C. V. Narvarte, L. A. R. Hinaloc, Shienna Mae C. Gonzaga, Bea A. Crisostomo, T. G. Genovia, M. Roleda","doi":"10.1080/00318884.2023.2197636","DOIUrl":"https://doi.org/10.1080/00318884.2023.2197636","url":null,"abstract":"ABSTRACT Calcified macroalgae are essential components of marine ecosystem, yet much of their physiology remains to be understood. Here, the nutrient (NO3– and PO4–3) uptake physiologies of two branched macroalgae, Actinotrichia fragilis (Nemaliophycidae) and Amphiroa fragilissima (Corallinophycidae), and the non-geniculate rhodolith Sporolithon sp. (Corallinophycidae) were examined. Sporolithon sp. had the lowest uptake rate through time and the three calcified macroalgae had a surge in NO3– and PO4–3 uptake that occurred between 3 and 20 min, with a maximum uptake at 3 min, after which the nutrient uptake rates declined. The NO3– uptake of the three calcified macroalgae followed Michaelis-Menten kinetics. For NO3– uptake, Sporolithon sp. had the lowest Km (2.72 ± 0.97 µM), Vmax (0.08 ± 0.01 µmol gDW–1 h–1), Vmax/Km (0.05 ± 0.03 µmol gDW–1 h–1 µM−1) and α (0.01 ± 0.00 µmol gDW–1 h–1 µM−1), while A. fragilis had the highest Km (12.35 ± 0.71 µM) and Vmax (6.41 ± 0.23 µmol gDW–1 h–1), and A. fragilissima had the highest Vmax/Km (1.52 ± 0.26 µmol gDW–1 h–1 µM−1) and α (0.37 ± 0.01 µmol gDW–1 h–1 µM−1). Moreover, the PO4–3 uptake rate of the three species was faster at higher PO4–3 levels. These differences in species-specific nutrient uptake traits are likely caused by differences in morphology. These traits are important for survival and proliferation of this group of marine organisms, particularly in a nutrient-variable environment.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45000568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-05-01DOI: 10.1080/00318884.2023.2202069
Lucie O. Hornberger, Isabella J. Maggard, R. Matthews, A. B. Cahoon
ABSTRACT Cryptomonas is a common metropolitan freshwater microalgal genus that is easily recognizable due to its distinctive asymmetric cellular morphology and swimming pattern. There are currently 71 recognized Cryptomonas species but these can be difficult to identify by cellular morphology alone. This makes estimation of Cryptomonas diversity from environmental samples challenging as it requires culturing of strains followed by sequencing of genetic markers for clear identifications. In this paper we describe the isolation and culture of Cryptomonas pyrenoidifera from a small ephemeral pool in Southwestern Virginia, USA, with an annual recurrent population of this genus. Genomic resources from this isolate, including complete chloroplast and mitochondrial genomes, and nuclear and nucleomorph rRNA regions, were completed and archived. Metabarcoding, using lineage-directed primers designed to amplify the ITS2 region of Cryptomonas, was used to estimate an intra-specific variation of 99.3% for the C. pyrenoidifera ITS2 barcode from this natural environment. Metabarcoding also revealed that at least twelve phylogenetic species were present in this body of water. Our results provide new genomic resources for C. pyrenoidifera and suggest that metabarcoding with the ITS2 marker is a feasible approach to estimating Cryptomonas diversity and identification.
{"title":"Cryptomonas pyrenoidifera organellar genomes and estimation of its ITS2 sequence diversity using lineage directed barcode primers","authors":"Lucie O. Hornberger, Isabella J. Maggard, R. Matthews, A. B. Cahoon","doi":"10.1080/00318884.2023.2202069","DOIUrl":"https://doi.org/10.1080/00318884.2023.2202069","url":null,"abstract":"ABSTRACT Cryptomonas is a common metropolitan freshwater microalgal genus that is easily recognizable due to its distinctive asymmetric cellular morphology and swimming pattern. There are currently 71 recognized Cryptomonas species but these can be difficult to identify by cellular morphology alone. This makes estimation of Cryptomonas diversity from environmental samples challenging as it requires culturing of strains followed by sequencing of genetic markers for clear identifications. In this paper we describe the isolation and culture of Cryptomonas pyrenoidifera from a small ephemeral pool in Southwestern Virginia, USA, with an annual recurrent population of this genus. Genomic resources from this isolate, including complete chloroplast and mitochondrial genomes, and nuclear and nucleomorph rRNA regions, were completed and archived. Metabarcoding, using lineage-directed primers designed to amplify the ITS2 region of Cryptomonas, was used to estimate an intra-specific variation of 99.3% for the C. pyrenoidifera ITS2 barcode from this natural environment. Metabarcoding also revealed that at least twelve phylogenetic species were present in this body of water. Our results provide new genomic resources for C. pyrenoidifera and suggest that metabarcoding with the ITS2 marker is a feasible approach to estimating Cryptomonas diversity and identification.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44392993","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-04-27DOI: 10.1080/00318884.2023.2201152
P. Volkova, E. V. Chemeris
ABSTRACT A phylogeographic approach is the only way to study the dispersal history of most algae, which are rarely preserved as fossils. However, the only freshwater alga for which this approach has been applied on a Eurasian scale is the endangered green alga Aegagropila linnaei, which is thought to be a poor disperser. Previous phylogeographic results were explained by stepwise dispersal across the Holarctic from an ancestral area in Japan, with further survival in European ice-dammed glacial lakes and extinction in continental Siberia, which lacks such refugia. To clarify the biogeography of A. linnaei in Eurasia we supplemented the published data on its ribotype (internal transcribed spacer of ribosomal DNA) distribution with data from previously unexplored East Europe, Mongolia and the Russian Far East. We have found two new ribotypes, one scattered across temperate Europe and another confined to one locality in the north-eastern Russian Far East. We also expanded the distribution of a ribotype previously reported from Scotland and continental West Europe to include East Europe, Iceland and Central Mongolia. Phylogeogeographic approach based on enhanced sampling allowed us to refine the biogeography of A. linnaei. We discuss reasons for underestimation of A. linnaei dispersal potential. A focused inventory of A. linnaei will likely reveal new localities of the species enabling a further improvement in biogeographical reconstructions. Area-wide studies of other freshwater algae in Eurasia need to be performed to test the generality of the revealed biogeographical patterns.
{"title":"Enhanced sampling refines the biogeography of the freshwater green alga Aegagropila linnaei (Cladophoraceae)","authors":"P. Volkova, E. V. Chemeris","doi":"10.1080/00318884.2023.2201152","DOIUrl":"https://doi.org/10.1080/00318884.2023.2201152","url":null,"abstract":"ABSTRACT A phylogeographic approach is the only way to study the dispersal history of most algae, which are rarely preserved as fossils. However, the only freshwater alga for which this approach has been applied on a Eurasian scale is the endangered green alga Aegagropila linnaei, which is thought to be a poor disperser. Previous phylogeographic results were explained by stepwise dispersal across the Holarctic from an ancestral area in Japan, with further survival in European ice-dammed glacial lakes and extinction in continental Siberia, which lacks such refugia. To clarify the biogeography of A. linnaei in Eurasia we supplemented the published data on its ribotype (internal transcribed spacer of ribosomal DNA) distribution with data from previously unexplored East Europe, Mongolia and the Russian Far East. We have found two new ribotypes, one scattered across temperate Europe and another confined to one locality in the north-eastern Russian Far East. We also expanded the distribution of a ribotype previously reported from Scotland and continental West Europe to include East Europe, Iceland and Central Mongolia. Phylogeogeographic approach based on enhanced sampling allowed us to refine the biogeography of A. linnaei. We discuss reasons for underestimation of A. linnaei dispersal potential. A focused inventory of A. linnaei will likely reveal new localities of the species enabling a further improvement in biogeographical reconstructions. Area-wide studies of other freshwater algae in Eurasia need to be performed to test the generality of the revealed biogeographical patterns.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-04-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44040403","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-04-21DOI: 10.1080/00318884.2023.2193121
D. Vidaković, Z. Levkov, J. Krizmanić, B. Beszteri, B. Gavrilović, Miloš Ćirić
ABSTRACT Combining morphological and molecular approaches, a new diatom species is described in the genus Mayamaea from a Special Nature Reserve, Okanj bara in Serbia, an alkaline and subsaline soda pan with pronounced seasonal drying. Mayamaea pannonica sp. nov. possesses typical characteristics of the genus Mayamaea, such as uniseriate striae and hymenes that cover the areolae from the outside. It can easily be distinguished from similar species by the valve outline and shape of the central area. Although presently no culture of the species is available, we identified in an amplicon data set from the same sample a partial 18S rRNA gene sequence that is thought to represent the new species, with high probability. A comparison of our sequence to those present in the Diat.barcode and NCBI databases showed that the sequence is closely related to, but significantly different from, that of Mayamaea terrestris. Natural saline habitats in Serbia and neighbouring countries are under anthropogenic threat and climate change, so knowing which species live here is the first step in preserving these unique habitats.
{"title":"A new small-celled naviculoid diatom species, Mayamaea pannonica sp. nov. (Bacillariophyceae) from soda pans in Serbia","authors":"D. Vidaković, Z. Levkov, J. Krizmanić, B. Beszteri, B. Gavrilović, Miloš Ćirić","doi":"10.1080/00318884.2023.2193121","DOIUrl":"https://doi.org/10.1080/00318884.2023.2193121","url":null,"abstract":"ABSTRACT Combining morphological and molecular approaches, a new diatom species is described in the genus Mayamaea from a Special Nature Reserve, Okanj bara in Serbia, an alkaline and subsaline soda pan with pronounced seasonal drying. Mayamaea pannonica sp. nov. possesses typical characteristics of the genus Mayamaea, such as uniseriate striae and hymenes that cover the areolae from the outside. It can easily be distinguished from similar species by the valve outline and shape of the central area. Although presently no culture of the species is available, we identified in an amplicon data set from the same sample a partial 18S rRNA gene sequence that is thought to represent the new species, with high probability. A comparison of our sequence to those present in the Diat.barcode and NCBI databases showed that the sequence is closely related to, but significantly different from, that of Mayamaea terrestris. Natural saline habitats in Serbia and neighbouring countries are under anthropogenic threat and climate change, so knowing which species live here is the first step in preserving these unique habitats.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48053128","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
京公网安备 11010802042870号
京ICP备2023020795号-1
扫码关注我们
求助内容：
应助结果提醒方式：