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Origin and evolution of a new tetraploid mangrove species in an intertidal zone. 潮间带四倍体红树林新物种的起源与进化。
IF 4.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-04-26 eCollection Date: 2024-07-01 DOI: 10.1016/j.pld.2024.04.007
Hui Feng, Achyut Kumar Banerjee, Wuxia Guo, Yang Yuan, Fuyuan Duan, Wei Lun Ng, Xuming Zhao, Yuting Liu, Chunmei Li, Ying Liu, Linfeng Li, Yelin Huang

Polyploidy is a major factor in the evolution of plants, yet we know little about the origin and evolution of polyploidy in intertidal species. This study aimed to identify the evolutionary transitions in three true-mangrove species of the genus Acanthus distributed in the Indo-West Pacific region. For this purpose, we took an integrative approach that combined data on morphology, cytology, climatic niche, phylogeny, and biogeography of 493 samples from 42 geographic sites. Our results show that the Acanthus ilicifolius lineage distributed east of the Thai-Malay Peninsula possesses a tetraploid karyotype, which is morphologically distinct from that of the lineage on the west side. The haplotype networks and phylogenetic trees for the chloroplast genome and eight nuclear genes reveal that the tetraploid species has two sub-genomes, one each from A. ilicifolius and A . ebracteatus, the paternal and maternal parents, respectively. Population structure analysis also supports the hybrid speciation history of the new tetraploid species. The two sub-genomes of the tetraploid species diverged from their diploid progenitors during the Pleistocene. Environmental niche models revealed that the tetraploid species not only occupied the near-entire niche space of the diploids, but also expanded into novel environments. Our findings suggest that A. ilicifolius species distributed on the east side of the Thai-Malay Peninsula should be regarded as a new species, A. tetraploideus, which originated from hybridization between A. ilicifolius and A. ebracteatus, followed by chromosome doubling. This is the first report of a true-mangrove allopolyploid species that can reproduce sexually and clonally reproduction, which explains the long-term adaptive potential of the species.

多倍体是植物进化的一个重要因素,但我们对潮间带物种多倍体的起源和进化知之甚少。本研究旨在确定分布在印度-西太平洋地区的三个真红树属物种的进化转变。为此,我们采用了一种综合方法,结合了来自 42 个地理位置的 493 个样本的形态学、细胞学、气候生态位、系统发育和生物地理学数据。结果表明,分布在泰国-马来半岛以东的Acanthus ilicifolius品系具有四倍体核型,在形态上与西侧的品系截然不同。叶绿体基因组和八个核基因的单倍型网络和系统发生树显示,该四倍体物种有两个亚基因组,分别来自父本 A. ilicifolius 和母本 A. ebracteatus。种群结构分析也支持四倍体新物种的杂交分化历史。四倍体物种的两个亚基因组是在更新世期间从它们的二倍体祖先分化而来的。环境生态位模型显示,四倍体物种不仅占据了二倍体近乎完整的生态位空间,而且还扩展到了新的环境中。我们的研究结果表明,分布在泰国-马来半岛东侧的A. ilicifolius物种应被视为一个新物种,即A. tetraploideus,它起源于A. ilicifolius和A. ebracteatus的杂交,随后染色体加倍。这是首次报道能进行有性繁殖和克隆繁殖的真红树异源多倍体物种,这解释了该物种的长期适应潜力。
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引用次数: 0
Genetically- and environmentally-dependent processes drive interspecific and intraspecific divergence in the Chinese relict endemic genus Dipteronia. 遗传和环境依赖过程推动了中国孑遗特有种珙桐属的种间和种内分化。
IF 4.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-04-26 eCollection Date: 2024-09-01 DOI: 10.1016/j.pld.2024.04.008
Tao Zhou, Xiaodan Chen, Jordi López-Pujol, Guoqing Bai, Sonia Herrando-Moraira, Neus Nualart, Xiao Zhang, Yuemei Zhao, Guifang Zhao

China is a hotspot of relict plant species that were once widespread throughout the Northern Hemisphere. Recent research has demonstrated that the occurrence of long-term stable refugia in the mountainous regions of central and south-western China allowed their persistence through the late Neogene climate fluctuations. One of these relict lineages is Dipteronia, an oligotypic tree genus with a fossil record extending to the Paleocene. Here, we investigated the genetic variability, demographic dynamics and diversification patterns of the two currently recognized Dipteronia species (D ipteronia sinensis and D . dyeriana). Molecular data were obtained from 45 populations of Dipteronia by genotyping three cpDNA regions, two single copy nuclear genes and 15 simple sequence repeat loci. The genetic study was combined with niche comparison analyses on the environmental space, ecological niche modeling, and landscape connectivity analysis. We found that the two Dipteronia species have highly diverged both in genetic and ecological terms. Despite the incipient speciation processes that can be observed in D. sinensis, the occurrence of long-term stable refugia and, particularly, a dispersal corridor along Daba Shan-west Qinling, likely ensured its genetic and ecological integrity to date. Our study will not only help us to understand how populations of Dipteronia species responded to the tectonic and climatic changes of the Cenozoic, but also provide insight into how Arcto-Tertiary relict plants in East Asia survived, evolved, and diversified.

中国是曾广泛分布于北半球的孑遗植物物种的热点地区。最新研究表明,中国中部和西南部山区存在长期稳定的避难所,使得这些物种在新近纪晚期的气候波动中得以延续。Dipteronia是其中的一个孑遗种,其化石记录可追溯到古新世。在这里,我们研究了目前公认的两个Dipteronia物种(D ipteronia sinensis和D. dyeriana)的遗传变异性、人口动态和多样化模式。通过对三个 cpDNA 区域、两个单拷贝核基因和 15 个简单序列重复位点进行基因分型,我们获得了 45 个 Dipteronia 种群的分子数据。遗传研究与环境空间生态位比较分析、生态位建模和景观连通性分析相结合。我们发现,这两种 Dipteronia 在遗传学和生态学方面都存在高度分化。尽管在D. sinensis中可以观察到初步的物种分化过程,但长期稳定的避难所,特别是沿大巴山-西秦岭的扩散走廊,可能确保了其迄今为止遗传和生态的完整性。我们的研究不仅有助于我们了解Dipteronia种群如何应对新生代的构造和气候变化,还有助于我们深入了解东亚地区的始新世孑遗植物是如何生存、进化和多样化的。
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引用次数: 0
Comparative analysis shows high level of lineage sorting in genomic regions with low recombination in the extended Picea likiangensis species complex. 比较分析表明,在扩展的云杉物种复合体中,重组率较低的基因组区域的世系分类水平较高。
IF 4.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-04-10 eCollection Date: 2024-07-01 DOI: 10.1016/j.pld.2024.04.004
Hui Zhu, Weixiao Lei, Qing Lai, Yongshuai Sun, Dafu Ru

•Phylogenomic analysis uncovers widespread discordance in the extended Picea likiangensis complex.•Introgression (54.99%) and incomplete lineage sorting (ILS; 33.12%) are key drivers of this incongruity.•Recombination rates shape ILS and introgression, with high rates correlating with elevated levels.•Genes linked to abiotic stress responses exhibit significant introgression and ILS, suggesting adaptive evolution.•Lower recombination rates improve accuracy in species relationships.

-基因与非生物应激反应相关,表现出显著的内向性和内向性,表明适应性进化。
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引用次数: 0
Epigenetic control on transcription of vernalization genes and whole-genome gene expression profile induced by vernalization in common wheat. 春化对普通小麦春化基因转录的表观遗传调控及诱导的全基因组基因表达谱。
IF 4.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-03-04 eCollection Date: 2024-05-01 DOI: 10.1016/j.pld.2024.02.005
Yunzhen Li, Liujie Jin, Xinyu Liu, Chao He, Siteng Bi, Sulaiman Saeed, Wenhao Yan

Vernalization is necessary for winter wheat to flower. However, it is unclear whether vernalization is also required for spring wheat, which is frequently sown in fall, and what molecular mechanisms underlie the vernalization response in wheat varieties. In this study, we examined the molecular mechanisms that regulate vernalization response in winter and spring wheat varieties. For this purpose, we determined how major vernalization genes (VRN1, VRN2, and VRN3) respond to vernalization in these varieties and whether modifications to histones play a role in changes in gene expression. We also identified genes that are differentially regulated in response to vernalization in winter and spring wheat varieties. We found that in winter wheat, but not in spring wheat, VRN1 expression decreases when returned to warm temperature following vernalization. This finding may be associated with differences between spring and winter wheat in the levels of tri-methylation of lysine 27 on histone H3 (H3K27me3) and tri-methylation of lysine 4 on histone H3 (H3K4me3) at the VRN1 gene. Analysis of winter wheat transcriptomes before and after vernalization revealed that vernalization influences the expression of several genes, including those involved in leucine catabolism, cysteine biosynthesis, and flavonoid biosynthesis. These findings provide new candidates for further study on the mechanism of vernalization regulation in wheat.

冬小麦开花需要春化。然而,目前还不清楚经常在秋季播种的春小麦是否也需要春化,也不清楚小麦品种春化反应的分子机制是什么。在这项研究中,我们考察了调控冬小麦和春小麦品种春化反应的分子机制。为此,我们确定了这些品种的主要春化基因(VRN1、VRN2 和 VRN3)如何对春化做出反应,以及组蛋白的修饰是否在基因表达变化中发挥作用。我们还确定了冬小麦和春小麦品种中对春化反应进行不同调控的基因。我们发现,在冬小麦中,春化后恢复到温暖温度时,VRN1 的表达会减少,而在春小麦中则不会。这一发现可能与春小麦和冬小麦在 VRN1 基因上组蛋白 H3 上赖氨酸 27 的三甲基化(H3K27me3)和组蛋白 H3 上赖氨酸 4 的三甲基化(H3K4me3)水平的差异有关。对春化前后冬小麦转录组的分析表明,春化会影响多个基因的表达,包括参与亮氨酸分解、半胱氨酸生物合成和黄酮类化合物生物合成的基因。这些发现为进一步研究小麦春化调控机制提供了新的候选基因。
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引用次数: 0
Stomatal dynamics are regulated by leaf hydraulic traits and guard cell anatomy in nine true mangrove species. 九种真红树林物种的气孔动态受叶片水力特征和防护细胞解剖结构的调节。
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-02-08 eCollection Date: 2024-05-01 DOI: 10.1016/j.pld.2024.02.003
Ya-Dong Qie, Qi-Wei Zhang, Scott A M McAdam, Kun-Fang Cao

Stomatal regulation is critical for mangroves to survive in the hyper-saline intertidal zone where water stress is severe and water availability is highly fluctuant. However, very little is known about the stomatal sensitivity to vapour pressure deficit (VPD) in mangroves, and its co-ordination with stomatal morphology and leaf hydraulic traits. We measured the stomatal response to a step increase in VPD in situ, stomatal anatomy, leaf hydraulic vulnerability and pressure-volume traits in nine true mangrove species of five families and collected the data of genome size. We aimed to answer two questions: (1) Does stomatal morphology influence stomatal dynamics in response to a high VPD in mangroves? with a consideration of possible influence of genome size on stomatal morphology; and (2) do leaf hydraulic traits influence stomatal sensitivity to VPD in mangroves? We found that the stomata of mangrove plants were highly sensitive to a step rise in VPD and the stomatal responses were directly affected by stomatal anatomy and hydraulic traits. Smaller, denser stomata was correlated with faster stomatal closure at high VPD across the species of Rhizophoraceae, and stomata size negatively and vein density positively correlated with genome size. Less negative leaf osmotic pressure at the full turgor (πo) was related to higher operating steady-state stomatal conductance (gs); and a higher leaf capacitance (Cleaf) and more embolism resistant leaf xylem were associated with slower stomatal responses to an increase in VPD. In addition, stomatal responsiveness to VPD was indirectly affected by leaf morphological traits, which were affected by site salinity and consequently leaf water status. Our results demonstrate that mangroves display a unique relationship between genome size, stomatal size and vein packing, and that stomatal responsiveness to VPD is regulated by leaf hydraulic traits and stomatal morphology. Our work provides a quantitative framework to better understand of stomatal regulation in mangroves in an environment with high salinity and dynamic water availability.

气孔调节对红树林在超盐碱潮间带生存至关重要,因为潮间带水压力大,水供应波动剧烈。然而,人们对红树林气孔对蒸汽压力不足(VPD)的敏感性及其与气孔形态和叶片水力特征的协调性知之甚少。我们测量了五科九种真正的红树林物种的气孔对蒸气压差阶跃增加的原位响应、气孔解剖、叶片水力脆弱性和压力-体积特征,并收集了基因组大小数据。我们的目的是回答两个问题:(1) 气孔形态是否影响红树林气孔对高 VPD 的动态响应? 同时考虑基因组大小对气孔形态的可能影响;(2) 叶片水力特征是否影响红树林气孔对 VPD 的敏感性?我们发现,红树林植物的气孔对阶跃上升的 VPD 高度敏感,气孔反应直接受气孔解剖学和水力特征的影响。在根瘤菌科的所有物种中,气孔越小越密集与高 VPD 时气孔关闭速度越快相关,气孔大小与基因组大小呈负相关,叶脉密度与基因组大小呈正相关。叶片在完全张力下的负渗透压(πo)较低与稳态气孔导度(gs)较高有关;叶片电容(Cleaf)较高和叶木质部抗栓塞能力较强与气孔对 VPD 增加的反应较慢有关。此外,气孔对 VPD 的反应速度还受到叶片形态特征的间接影响,而叶片形态特征又受到现场盐度的影响,进而影响叶片的水分状态。我们的研究结果表明,红树林在基因组大小、气孔大小和叶脉排列之间显示出一种独特的关系,气孔对VPD的反应能力受叶片水分特征和气孔形态的调节。我们的工作提供了一个定量框架,有助于更好地理解高盐度和动态水供应环境中红树林的气孔调节。
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引用次数: 0
pyIFPNI: A package for querying and downloading plant fossil data from the IFPNI pyIFPNI:从国际植物化石网络(IFPNI)查询和下载植物化石数据的软件包
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-12-01 DOI: 10.1016/j.pld.2023.12.001
Bailong Zhao
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引用次数: 0
Integrating high-volume molecular and morphological data into the evolutionary studies of Allium 将大量分子和形态学数据整合到 Allium 的进化研究中
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-12-01 DOI: 10.1016/j.pld.2023.12.002
Xing-jin He
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引用次数: 0
Large-scale interplant exchange of macromolecules between soybean and dodder under nutrient stresses 养分胁迫下大豆和菟丝子之间大分子的大规模植株间交换
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-12-01 DOI: 10.1016/j.pld.2023.11.005
Jingxiong Zhang, Shalan Li, Wenxing Li, Zerui Feng, Shuhan Zhang, Xijie Zheng, Yuxing Xu, Guojing Shen, Man Zhao, Guoyan Cao, Xuna Wu, Jianqiang Wu
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引用次数: 0
Simulated climate warming strongly constrains the seedling establishment of alpine cushion Arenaria oreophila 模拟气候变暖严重制约了高山簕杜鹃幼苗的生长
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-12-01 DOI: 10.1016/j.pld.2023.11.003
Renyu Zhou, Pengfei Yang, Xufang Chen, Minshu Song, Hang Sun, Jianguo Chen
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引用次数: 0
Global patterns and ecological drivers of taxonomic and phylogenetic endemism in angiosperm genera 被子植物属的分类和系统发育特有性的全球模式和生态驱动因素
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-12-01 DOI: 10.1016/j.pld.2023.11.004
Hong Qian, Brent D. Mishler, Jian Zhang, Shenhua Qian
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引用次数: 0
期刊
Plant Diversity
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