首页 > 最新文献

Plant Diversity最新文献

英文 中文
Evidence of the oldest extant vascular plant (horsetails) from the Indian Cenozoic 印度新生代现存最古老维管植物(马尾)的证据
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-09-01 DOI: 10.1016/j.pld.2023.01.004
Sampa Kundu , Taposhi Hazra , Tapan Chakraborty , Subir Bera , Mahasin Ali Khan

Equisetum (Equisetaceae) has long been a focus of attention for botanists and palaeontologists because, given its extensive and well-documented fossil record, it is considered the oldest extant vascular plant and a key element in understanding vascular plant evolution. However, to date, no authentic fossil evidence of Equisetum has been found from the Indian Cenozoic. Here, we describe a new fossil species, namely, E. siwalikum sp. nov., recovered from the middle Siwalik (Late Miocene) sediments of Himachal Pradesh, western Himalaya. We identified fossil specimens based on morphological and epidermal characters. In addition, X-Ray diffraction (XRD) analysis was used to determine the mineral composition of compressed stems of Equisetum. The close affinity of our recovered Siwalik fossils to Equisetum is supported by the presence of both macromorphological and epidermal characters. Because Equisetum generally grows in wet conditions around water reservoirs, our findings indicate that the fossil locality was humid and surrounded by swamp and lowland regions during deposition. Ample fossil evidence indicates that this sphenopsid once existed in the western Himalaya during the Siwalik period. However, at present Equisetum is confined to a particular area of our fossil locality, probably a consequence of severe environmental changes coupled with competition from opportunistic angiosperms. Our discovery of Equisetum fossils in appreciable numbers from the Siwalik sediments of the Himachal Himalayas is unique and constitutes the first reliable recognition of Equisetum from the Indian Cenozoic.

木贼属(木贼科)长期以来一直是植物学家和古生物学家关注的焦点,因为它有着广泛而翔实的化石记录,被认为是现存最古老的维管植物,也是理解维管植物进化的关键因素。然而,到目前为止,还没有发现印度新生代木贼的真实化石证据。在这里,我们描述了一个新的化石物种,即E.siwalikum sp.nov.,它是从喜马拉雅西部喜马偕尔邦的Siwalik中期(中新世晚期)沉积物中发现的。我们根据形态学和表皮特征鉴定了化石标本。此外,利用X射线衍射(XRD)分析方法测定了木贼压缩茎的矿物组成。我们发现的西瓦利克化石与木贼的密切亲缘关系得到了宏观形态和表皮特征的支持。由于木贼通常生长在水库周围的潮湿条件下,我们的研究结果表明,在沉积过程中,化石所在地潮湿,被沼泽和低地包围。大量的化石证据表明,这种蝶纲动物在西瓦利克时期曾存在于喜马拉雅西部。然而,目前木贼仅限于我们化石所在地的一个特定区域,这可能是严重的环境变化加上机会性被子植物竞争的结果。我们在喜马偕尔喜马拉雅山脉的西瓦利克沉积物中发现了数量可观的木贼化石,这是独一无二的,也是对印度新生代木贼的首次可靠识别。
{"title":"Evidence of the oldest extant vascular plant (horsetails) from the Indian Cenozoic","authors":"Sampa Kundu ,&nbsp;Taposhi Hazra ,&nbsp;Tapan Chakraborty ,&nbsp;Subir Bera ,&nbsp;Mahasin Ali Khan","doi":"10.1016/j.pld.2023.01.004","DOIUrl":"https://doi.org/10.1016/j.pld.2023.01.004","url":null,"abstract":"<div><p><em>Equisetum</em> (Equisetaceae) has long been a focus of attention for botanists and palaeontologists because, given its extensive and well-documented fossil record, it is considered the oldest extant vascular plant and a key element in understanding vascular plant evolution. However, to date, no authentic fossil evidence of <em>Equisetum</em> has been found from the Indian Cenozoic. Here, we describe a new fossil species<em>,</em> namely, <em>E. siwalikum</em> sp. nov., recovered from the middle Siwalik (Late Miocene) sediments of Himachal Pradesh, western Himalaya. We identified fossil specimens based on morphological and epidermal characters. In addition, X-Ray diffraction (XRD) analysis was used to determine the mineral composition of compressed stems of <em>Equisetum</em>. The close affinity of our recovered Siwalik fossils to <em>Equisetum</em> is supported by the presence of both macromorphological and epidermal characters. Because <em>Equisetum</em> generally grows in wet conditions around water reservoirs, our findings indicate that the fossil locality was humid and surrounded by swamp and lowland regions during deposition. Ample fossil evidence indicates that this sphenopsid once existed in the western Himalaya during the Siwalik period. However, at present <em>Equisetum</em> is confined to a particular area of our fossil locality, probably a consequence of severe environmental changes coupled with competition from opportunistic angiosperms. Our discovery of <em>Equisetum</em> fossils in appreciable numbers from the Siwalik sediments of the Himachal Himalayas is unique and constitutes the first reliable recognition of <em>Equisetum</em> from the Indian Cenozoic.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 5","pages":"Pages 569-589"},"PeriodicalIF":4.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49810902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Is intraspecific trait differentiation in Parthenium hysterophorus a consequence of hereditary factors and/or phenotypic plasticity? 独雌菊种内性状分化是遗传因素和/或表型可塑性的结果吗?
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-09-01 DOI: 10.1016/j.pld.2022.09.002
Amarpreet Kaur , Shalinder Kaur , Harminder Pal Singh , Daizy R. Batish

Of the various strategies adopted by an invasive plant species for expanding its niche breadth, phenotypic differentiation (either due to plasticity and/or adaptive evolution) is proven to be the most successful. Lately, we studied the persistence of substantial morpho-functional variations within the individuals of alien invasive plant, Parthenium hysterophorus in Chandigarh, India, through field surveys. Based on observed differences, the individuals were categorized into two morphotypes, PA and PB. PA had higher leaf area, leaf biomass, and chlorophyll content as compared with PB. However, PB had a higher stem circumference, stem specific density, twig dry matter content, profuse branching, bigger canopy, and better reproductive output than PA. To substantiate the persistence of intraspecific variations in P. hysterophorus and to deduce the possible genesis of these variations, we propagated both the morphotypes under experimental conditions in winter and summer. Apart from the key morpho-functional differences observed during the field studies, protein and carbohydrate metabolism were studied in leaves and roots of the propagated plants. Differences in plant metabolism were observed only during the early growth period, whereas the morpho-functional traits varied in the mature flowering plants. The effect of growth season was highly significant on all the studied morpho-functional and biochemical parameters (p ≤ 0.05). Parent morphotypes (P) and interactions between morphotypes and seasons significantly affected several growth parameters (p ≤ 0.05). The analyses revealed that the contrasting growth conditions at the time of transplantation and early growth may regulate the phenotype of P. hysterophorus. The pattern of intraspecific variations observed during the study is justified to consider morphotype PA as winter biotype and morphotype PB as summer biotype of P. hysterophorus. The study points towards the role of plasticity or a combination of genetic and environmental (G × E) factors in producing the phenotypic variability observed in the population of P. hysterophorus.

在入侵植物物种为扩大其生态位宽度而采取的各种策略中,表型分化(由于可塑性和/或适应性进化)被证明是最成功的。最近,我们通过实地调查,研究了印度昌迪加尔的外来入侵植物Parthenium hysterophorus个体内部持续存在的大量形态功能变异。根据观察到的差异,将个体分为两种形态类型,PA和PB。与PB相比,PA具有更高的叶面积、叶生物量和叶绿素含量。然而,与PA相比,PB具有更高的茎围、茎比密度、枝条干物质含量、丰富的分枝、更大的冠层和更好的繁殖产量。为了证实P.hysterophorus种内变异的持久性并推断这些变异的可能成因,我们在冬季和夏季的实验条件下繁殖了这两种形态类型。除了在实地研究中观察到的关键形态功能差异外,还研究了繁殖植物的叶和根中的蛋白质和碳水化合物代谢。植物代谢的差异仅在生长早期观察到,而成熟开花植物的形态功能特征各不相同。生长季节对所研究的所有形态功能和生化参数的影响都非常显著(p≤0.05)。亲本形态类型(p)以及形态类型与季节之间的相互作用显著影响了几个生长参数(p≤0.05hysterophorus的表型。在研究过程中观察到的种内变异模式是合理的,可以将形态型PA视为子宫藻的冬季生物型,将形态型PB视为夏季生物型。该研究指出了可塑性或遗传和环境(G×E)因素的组合在产生子宫扁藻种群中观察到的表型变异中的作用。
{"title":"Is intraspecific trait differentiation in Parthenium hysterophorus a consequence of hereditary factors and/or phenotypic plasticity?","authors":"Amarpreet Kaur ,&nbsp;Shalinder Kaur ,&nbsp;Harminder Pal Singh ,&nbsp;Daizy R. Batish","doi":"10.1016/j.pld.2022.09.002","DOIUrl":"https://doi.org/10.1016/j.pld.2022.09.002","url":null,"abstract":"<div><p>Of the various strategies adopted by an invasive plant species for expanding its niche breadth, phenotypic differentiation (either due to plasticity and/or adaptive evolution) is proven to be the most successful. Lately, we studied the persistence of substantial morpho-functional variations within the individuals of alien invasive plant, <em>Parthenium hysterophorus</em> in Chandigarh, India, through field surveys. Based on observed differences, the individuals were categorized into two morphotypes, P<sub>A</sub> and P<sub>B</sub>. P<sub>A</sub> had higher leaf area, leaf biomass, and chlorophyll content as compared with P<sub>B</sub>. However, P<sub>B</sub> had a higher stem circumference, stem specific density, twig dry matter content, profuse branching, bigger canopy, and better reproductive output than P<sub>A</sub>. To substantiate the persistence of intraspecific variations in <em>P</em>. <em>hysterophorus</em> and to deduce the possible genesis of these variations, we propagated both the morphotypes under experimental conditions in winter and summer. Apart from the key morpho-functional differences observed during the field studies, protein and carbohydrate metabolism were studied in leaves and roots of the propagated plants. Differences in plant metabolism were observed only during the early growth period, whereas the morpho-functional traits varied in the mature flowering plants. The effect of growth season was highly significant on all the studied morpho-functional and biochemical parameters (<em>p</em> ≤ 0.05). Parent morphotypes (P) and interactions between morphotypes and seasons significantly affected several growth parameters (<em>p</em> ≤ 0.05). The analyses revealed that the contrasting growth conditions at the time of transplantation and early growth may regulate the phenotype of <em>P</em>. <em>hysterophorus</em>. The pattern of intraspecific variations observed during the study is justified to consider morphotype P<sub>A</sub> as winter biotype and morphotype P<sub>B</sub> as summer biotype of <em>P</em>. <em>hysterophorus</em>. The study points towards the role of plasticity or a combination of genetic and environmental (G × E) factors in producing the phenotypic variability observed in the population of <em>P</em>. <em>hysterophorus</em>.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 5","pages":"Pages 611-620"},"PeriodicalIF":4.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49853231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Convergent relationships between flower economics and hydraulic traits across aquatic and terrestrial herbaceous plants 水生和陆生草本植物的花经济性和水力特性之间的趋同关系
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-09-01 DOI: 10.1016/j.pld.2023.01.006
Yan Ke , Feng-Ping Zhang , Yun-Bing Zhang , Wei Li , Qin Wang , Da Yang , Jiao-Lin Zhang , Kun-Fang Cao

Maintaining open flowers is critical for successful pollination and depends on long-term water and carbon balance. Yet the relationship between how flower hydraulic traits are coordinated in different habitats is poorly understood. Here, we hypothesize that the coordination and trade-offs between floral hydraulics and economics traits are independent of environmental conditions. To test this hypothesis, we investigated a total of 27 flower economics and hydraulic traits in six aquatic and six terrestrial herbaceous species grown in a tropical botanical garden. We found that although there were a few significant differences, most flower hydraulics and economics traits did not differ significantly between aquatic and terrestrial herbaceous plants. Both flower mass per area and floral longevity were significantly positively correlated with the time required for drying full-hydrated flowers to 70% relative water content. Flower dry matter content was strongly and positively related to drought tolerance of the flowers as indicated by flower water potential at the turgor loss point. In addition, there was a trade-off between hydraulic efficiency and the construction cost of a flower across species. Our results show that flowers of aquatic and terrestrial plants follow the same economics spectrum pattern. These results suggest a convergent flower economics design across terrestrial and aquatic plants, providing new insights into the mechanisms by which floral organs adapt to aquatic and terrestrial habitats.

保持开放的花朵对成功授粉至关重要,这取决于长期的水和碳平衡。然而,人们对不同生境中花朵水力特征如何协调之间的关系知之甚少。在这里,我们假设花卉水力学和经济特征之间的协调和权衡与环境条件无关。为了验证这一假设,我们调查了热带植物园中生长的六种水生和六种陆生草本植物的27个花朵经济和水力特征。我们发现,尽管存在一些显著差异,但水生和陆生草本植物的大多数花水力学和经济性状没有显著差异。单位面积的花质量和花的寿命都与将完全水合的花干燥到70%相对含水量所需的时间显著正相关。花干物质含量与花的耐旱性呈正相关,表现为在膨压损失点的花水势。此外,水力效率和跨物种花卉的施工成本之间存在权衡。我们的研究结果表明,水生植物和陆生植物的花朵遵循相同的经济光谱模式。这些结果表明,陆地和水生植物的花朵经济学设计趋同,为花器官适应水生和陆地栖息地的机制提供了新的见解。
{"title":"Convergent relationships between flower economics and hydraulic traits across aquatic and terrestrial herbaceous plants","authors":"Yan Ke ,&nbsp;Feng-Ping Zhang ,&nbsp;Yun-Bing Zhang ,&nbsp;Wei Li ,&nbsp;Qin Wang ,&nbsp;Da Yang ,&nbsp;Jiao-Lin Zhang ,&nbsp;Kun-Fang Cao","doi":"10.1016/j.pld.2023.01.006","DOIUrl":"https://doi.org/10.1016/j.pld.2023.01.006","url":null,"abstract":"<div><p>Maintaining open flowers is critical for successful pollination and depends on long-term water and carbon balance. Yet the relationship between how flower hydraulic traits are coordinated in different habitats is poorly understood. Here, we hypothesize that the coordination and trade-offs between floral hydraulics and economics traits are independent of environmental conditions. To test this hypothesis, we investigated a total of 27 flower economics and hydraulic traits in six aquatic and six terrestrial herbaceous species grown in a tropical botanical garden. We found that although there were a few significant differences, most flower hydraulics and economics traits did not differ significantly between aquatic and terrestrial herbaceous plants. Both flower mass per area and floral longevity were significantly positively correlated with the time required for drying full-hydrated flowers to 70% relative water content. Flower dry matter content was strongly and positively related to drought tolerance of the flowers as indicated by flower water potential at the turgor loss point. In addition, there was a trade-off between hydraulic efficiency and the construction cost of a flower across species. Our results show that flowers of aquatic and terrestrial plants follow the same economics spectrum pattern. These results suggest a convergent flower economics design across terrestrial and aquatic plants, providing new insights into the mechanisms by which floral organs adapt to aquatic and terrestrial habitats.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 5","pages":"Pages 601-610"},"PeriodicalIF":4.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49853239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
What do we know about treelines of the Anthropocene in High Asia? 我们对高亚洲地区人类世的谱系了解多少?
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-09-01 DOI: 10.1016/j.pld.2023.08.005
Georg Miehe, M.A.O. Kangshan, S. Hasson, J. Böhner, U. Schickhoff
{"title":"What do we know about treelines of the Anthropocene in High Asia?","authors":"Georg Miehe, M.A.O. Kangshan, S. Hasson, J. Böhner, U. Schickhoff","doi":"10.1016/j.pld.2023.08.005","DOIUrl":"https://doi.org/10.1016/j.pld.2023.08.005","url":null,"abstract":"","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"60 1","pages":""},"PeriodicalIF":4.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80564311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative analysis of the metabolome and transcriptome reveals the potential mechanism of fruit flavor formation in wild hawthorn (Crataegus chungtienensis) 代谢组和转录组的综合分析揭示了野生山楂果实风味形成的潜在机制
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-09-01 DOI: 10.1016/j.pld.2023.02.001
Xien Wu , Dengli Luo , Yingmin Zhang , Ling Jin , M. James C. Crabbe , Qin Qiao , Guodong Li , Ticao Zhang

Hawthorns are important medicinal and edible plants with a long history of health protection in China. Besides cultivated hawthorn, other wild hawthorns may also have excellent medicinal and edible value, such as Crataegus chungtienensis, an endemic species distributed in the Southwest of China. In this study, by integrating the flavor-related metabolome and transcriptome data of the ripening fruit of C. chungtienensis, we have developed an understanding of the formation of hawthorn fruit quality. The results show that a total of 849 metabolites were detected in the young and mature fruit of C. chungtienensis, of which flavonoids were the most detected metabolites. Among the differentially accumulated metabolites, stachyose, maltotetraose and cis-aconitic acid were significantly increased during fruit ripening, and these may be important metabolites affecting fruit flavor change. Moreover, several flavonoids and terpenoids were reduced after fruit ripening compared with young fruit. Therefore, using the unripe fruit of C. chungtienensis may allow us to obtain more medicinal active ingredients such as flavonoids and terpenoids. Furthermore, we screened out some differentially expressed genes (DEGs) related to fruit quality formation, which had important relationships with differentially accumulated sugars, acids, flavonoids and terpenoids. Our study provides new insights into flavor formation in wild hawthorn during fruit development and ripening, and at the same time this study lays the foundation for the improvement of hawthorn fruit flavor.

山楂是我国重要的药用和食用植物,具有悠久的保健历史。除栽培山楂外,其他野生山楂也可能具有良好的药用和食用价值,如分布在中国西南地区的特有种——重庆山楂。在本研究中,通过整合春天山楂成熟果实的风味相关代谢组和转录组数据,我们对山楂果实品质的形成有了了解。结果表明,在春田幼果和成熟果中共检测到849种代谢产物,其中黄酮类化合物是检测最多的代谢产物。在差异积累的代谢产物中,水苏糖、麦芽四糖和顺乌头酸在果实成熟过程中显著增加,这些可能是影响果实风味变化的重要代谢产物。此外,与幼果相比,果实成熟后几种黄酮类化合物和萜类化合物减少。因此,利用春天的未成熟果实可以获得更多的药用活性成分,如黄酮类和萜类化合物。此外,我们筛选出了一些与果实品质形成相关的差异表达基因,这些基因与差异积累的糖、酸、黄酮和萜类化合物有重要关系。我们的研究为野生山楂在果实发育和成熟过程中风味的形成提供了新的见解,同时为改善山楂果实风味奠定了基础。
{"title":"Integrative analysis of the metabolome and transcriptome reveals the potential mechanism of fruit flavor formation in wild hawthorn (Crataegus chungtienensis)","authors":"Xien Wu ,&nbsp;Dengli Luo ,&nbsp;Yingmin Zhang ,&nbsp;Ling Jin ,&nbsp;M. James C. Crabbe ,&nbsp;Qin Qiao ,&nbsp;Guodong Li ,&nbsp;Ticao Zhang","doi":"10.1016/j.pld.2023.02.001","DOIUrl":"https://doi.org/10.1016/j.pld.2023.02.001","url":null,"abstract":"<div><p>Hawthorns are important medicinal and edible plants with a long history of health protection in China. Besides cultivated hawthorn, other wild hawthorns may also have excellent medicinal and edible value, such as <em>Crataegus</em> <em>chungtienensis</em>, an endemic species distributed in the Southwest of China. In this study, by integrating the flavor-related metabolome and transcriptome data of the ripening fruit of <em>C. chungtienensis</em>, we have developed an understanding of the formation of hawthorn fruit quality. The results show that a total of 849 metabolites were detected in the young and mature fruit of <em>C. chungtienensis</em>, of which flavonoids were the most detected metabolites. Among the differentially accumulated metabolites, stachyose, maltotetraose and cis-aconitic acid were significantly increased during fruit ripening, and these may be important metabolites affecting fruit flavor change. Moreover, several flavonoids and terpenoids were reduced after fruit ripening compared with young fruit. Therefore, using the unripe fruit of <em>C. chungtienensis</em> may allow us to obtain more medicinal active ingredients such as flavonoids and terpenoids. Furthermore, we screened out some differentially expressed genes (DEGs) related to fruit quality formation, which had important relationships with differentially accumulated sugars, acids, flavonoids and terpenoids. Our study provides new insights into flavor formation in wild hawthorn during fruit development and ripening, and at the same time this study lays the foundation for the improvement of hawthorn fruit flavor.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 5","pages":"Pages 590-600"},"PeriodicalIF":4.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49810903","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plastid phylogenomics and species discrimination in the “Chinese” clade of Roscoea (Zingiberaceae) Roscoea(姜科)“中国”分支的质体系统发育学和物种鉴别
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-09-01 DOI: 10.1016/j.pld.2023.03.012
Hai-Su Hu , Jiu-Yang Mao , Xue Wang , Yu-Ze Liang , Bei Jiang , De-Quan Zhang

Roscoea is an alpine or subalpine genus from the pan-tropical family Zingiberaceae, which consists of two disjunct groups in geography, namely the “Chinese” clade and the “Himalayan” clade. Despite extensive research on the genus, Roscoea species remain poorly defined and relationships between these species are not well resolved. In this study, we used plastid genomes of nine species and one variety to resolve phylogenetic relationships within the “Chinese” clade of Roscoea and as DNA super barcodes for species discrimination. We found that Roscoea plastid genomes ranged in length from 163,063 to 163,796 bp, and encoded 113 genes, including 79 protein-coding genes, 30 tRNA genes, four rRNA genes. In addition, expansion and contraction of the IR regions showed obvious infraspecific conservatism and interspecific differentiation. Plastid phylogenomics revealed that species belonging to the “Chinese” clade of Roscoea can be divided into four distinct subclades. Furthermore, our analysis supported the independence of R. cautleoides var. pubescens, the recovery of Roscoea pubescens Z.Y. Zhu, and a close relationship between R. humeana and R. cautloides. When we used the plastid genome as a super barcode, we found that it possessed strong discriminatory power (90%) with high support values. Intergenic regions provided similar resolution, which was much better than that of protein-coding regions, hypervariable regions, and DNA universal barcodes. However, plastid genomes could not completely resolve Roscoea phylogeny or definitively discriminate species. These limitations are likely related to the complex history of Roscoea speciation, poorly defined species within the genus, and the maternal inheritance of plastid genomes.

Roscoea是泛热带姜科中的一个高山或亚高山属,在地理上由两个不连续的类群组成,即“中国”分支和“喜马拉雅”分支。尽管对该属进行了广泛的研究,但Roscoea物种的定义仍然很差,这些物种之间的关系也没有得到很好的解决。在这项研究中,我们使用了九个物种和一个变种的质体基因组来解决罗斯科“中国”分支内的系统发育关系,并作为物种识别的DNA超级条形码。我们发现Roscoea质体基因组的长度从163063到163796bp不等,编码113个基因,包括79个蛋白质编码基因、30个tRNA基因和4个rRNA基因。此外,IR区域的扩张和收缩表现出明显的种下保守性和种间分化。质体系统发育学研究表明,属于蔷薇科“中国”分支的物种可分为四个不同的亚支。此外,我们的分析支持了R.cautleoides var.pubescens的独立性、Roscoea pubescens Z.Y.Zhu的恢复,以及R.humeana和R.cautloides之间的密切关系。当我们使用质体基因组作为超级条形码时,我们发现它具有很强的辨别力(90%)和很高的支持值。基因间区提供了类似的分辨率,这比蛋白质编码区、高变区和DNA通用条形码要好得多。然而,质体基因组不能完全解决罗斯科的系统发育或明确区分物种。这些限制可能与Roscoea物种形成的复杂历史、属内定义不清的物种以及质体基因组的母体遗传有关。
{"title":"Plastid phylogenomics and species discrimination in the “Chinese” clade of Roscoea (Zingiberaceae)","authors":"Hai-Su Hu ,&nbsp;Jiu-Yang Mao ,&nbsp;Xue Wang ,&nbsp;Yu-Ze Liang ,&nbsp;Bei Jiang ,&nbsp;De-Quan Zhang","doi":"10.1016/j.pld.2023.03.012","DOIUrl":"https://doi.org/10.1016/j.pld.2023.03.012","url":null,"abstract":"<div><p><em>Roscoea</em> is an alpine or subalpine genus from the pan-tropical family Zingiberaceae, which consists of two disjunct groups in geography, namely the “Chinese” clade and the “Himalayan” clade. Despite extensive research on the genus, <em>Roscoea</em> species remain poorly defined and relationships between these species are not well resolved. In this study, we used plastid genomes of nine species and one variety to resolve phylogenetic relationships within the “Chinese” clade of <em>Roscoea</em> and as DNA super barcodes for species discrimination. We found that <em>Roscoea</em> plastid genomes ranged in length from 163,063 to 163,796 bp, and encoded 113 genes, including 79 protein-coding genes, 30 tRNA genes, four rRNA genes. In addition, expansion and contraction of the IR regions showed obvious infraspecific conservatism and interspecific differentiation. Plastid phylogenomics revealed that species belonging to the “Chinese” clade of <em>Roscoea</em> can be divided into four distinct subclades. Furthermore, our analysis supported the independence of <em>R</em>. <em>cautleoides</em> var. <em>pubescens</em>, the recovery of <em>Roscoea pubescens</em> Z.Y. Zhu, and a close relationship between <em>R</em>. <em>humeana</em> and <em>R</em>. <em>cautloides</em>. When we used the plastid genome as a super barcode, we found that it possessed strong discriminatory power (90%) with high support values. Intergenic regions provided similar resolution, which was much better than that of protein-coding regions, hypervariable regions, and DNA universal barcodes. However, plastid genomes could not completely resolve <em>Roscoea</em> phylogeny or definitively discriminate species. These limitations are likely related to the complex history of <em>Roscoea</em> speciation, poorly defined species within the genus, and the maternal inheritance of plastid genomes.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 5","pages":"Pages 523-534"},"PeriodicalIF":4.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49810897","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Drivers of the differentiation between broad-leaved trees and shrubs in the shift from evergreen to deciduous leaf habit in forests of eastern Asian subtropics 东亚亚热带森林常绿落叶性转变过程中阔叶树和灌木分化的驱动因素
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-09-01 DOI: 10.1016/j.pld.2022.12.008
Yi Jin , Hong Qian

In eastern Asian subtropical forests, leaf habit shifts from evergreen to deciduous broad-leaved woody plants toward higher latitudes. This shift has been largely explained by the greater capacity of deciduous broad-leaved plants to respond to harsh climatic conditions (e.g., greater seasonality). The advantages of deciduous leaf habit over evergreen leaf habit in more seasonal climates have led us to hypothesize that leaf habits would shift in response to climate changes more conspicuously in forest canopy trees than in forest understory shrubs. Furthermore, we hypothesize that in the forests of the subtropics, plants at higher latitudes, regardless of growth form, would better tolerate seasonal harsh climates, and hence show less differentiation in leaf habit shift, compared to those at lower latitudes. To test these two hypotheses, we modelled the proportion of deciduous broad-leaved species and the incidence of deciduous and evergreen broad-leaved species in woody angiosperm species compositions of ten large-sized forest plots distributed in the Chinese subtropics. We found that the rate of leaf habit shift along a latitudinal gradient was higher in forest trees than in forest shrubs. We also found that the differentiation in leaf habit shift between trees and shrubs is greater at lower latitudes (i.e., warmer climates) than at higher latitudes (i.e., colder climates). These findings indicate that specialized forest plants are differentially affected by climate in distinct forest strata in a manner dependent on latitudinal distribution. These differences in forest plant response to changes in climate suggest that global climate warming will alter growth forms and geographical distributions and ranges of forests.

在东亚亚热带森林中,叶性从常绿到落叶阔叶木本植物向高纬度地区转变。这种变化在很大程度上可以解释为落叶阔叶植物对恶劣气候条件的反应能力更强(例如季节性更强)。在更具季节性的气候中,落叶习性比常绿习性的优势使我们假设,与森林林下灌木相比,森林冠层树木的落叶习性会随着气候变化而发生更显著的变化。此外,我们假设,在亚热带的森林中,与低纬度的植物相比,高纬度的植物,无论生长形式如何,都能更好地忍受季节性的恶劣气候,因此在叶性变化方面表现出较少的分化。为了检验这两个假设,我们模拟了分布在中国亚热带的10个大型林区的木本被子植物物种组成中落叶阔叶物种的比例以及落叶和常绿阔叶物种的发生率。我们发现,森林树木的叶片习性沿纬度梯度的变化率高于森林灌木。我们还发现,在低纬度(即温暖的气候),树木和灌木之间的叶性变化差异比在高纬度(即寒冷的气候)更大。这些发现表明,在不同的森林地层中,特种森林植物受到气候的不同影响,其方式取决于纬度分布。森林植物对气候变化反应的这些差异表明,全球气候变暖将改变森林的生长形式、地理分布和范围。
{"title":"Drivers of the differentiation between broad-leaved trees and shrubs in the shift from evergreen to deciduous leaf habit in forests of eastern Asian subtropics","authors":"Yi Jin ,&nbsp;Hong Qian","doi":"10.1016/j.pld.2022.12.008","DOIUrl":"https://doi.org/10.1016/j.pld.2022.12.008","url":null,"abstract":"<div><p>In eastern Asian subtropical forests, leaf habit shifts from evergreen to deciduous broad-leaved woody plants toward higher latitudes. This shift has been largely explained by the greater capacity of deciduous broad-leaved plants to respond to harsh climatic conditions (e.g., greater seasonality). The advantages of deciduous leaf habit over evergreen leaf habit in more seasonal climates have led us to hypothesize that leaf habits would shift in response to climate changes more conspicuously in forest canopy trees than in forest understory shrubs. Furthermore, we hypothesize that in the forests of the subtropics, plants at higher latitudes, regardless of growth form, would better tolerate seasonal harsh climates, and hence show less differentiation in leaf habit shift, compared to those at lower latitudes. To test these two hypotheses, we modelled the proportion of deciduous broad-leaved species and the incidence of deciduous and evergreen broad-leaved species in woody angiosperm species compositions of ten large-sized forest plots distributed in the Chinese subtropics. We found that the rate of leaf habit shift along a latitudinal gradient was higher in forest trees than in forest shrubs. We also found that the differentiation in leaf habit shift between trees and shrubs is greater at lower latitudes (i.e., warmer climates) than at higher latitudes (i.e., colder climates). These findings indicate that specialized forest plants are differentially affected by climate in distinct forest strata in a manner dependent on latitudinal distribution. These differences in forest plant response to changes in climate suggest that global climate warming will alter growth forms and geographical distributions and ranges of forests.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 5","pages":"Pages 535-543"},"PeriodicalIF":4.8,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49810901","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Climate change impacts flowering phenology in Gongga Mountains, Southwest China. 气候变化对贡嘎山开花物候的影响
IF 4.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-07-28 eCollection Date: 2024-11-01 DOI: 10.1016/j.pld.2023.07.007
Kuiling Zu, Fusheng Chen, Yaoqi Li, Nawal Shrestha, Xiangmin Fang, Shahid Ahmad, Ghulam Nabi, Zhiheng Wang

Flowering phenology of plants, which is important for reproductive growth, has been shown to be influenced by climate change. Understanding how flowering phenology responds to climate change and exploring the variation of this response across plant groups can help predict structural and functional changes in plant communities in response to ongoing climate change. Here, we used long-term collections of 33 flowering plant species from the Gongga Mountains (Mt. Gongga hereafter), a biodiversity hotspot, to investigate how plant flowering phenology changed over the past 70 years in response to climate change. We found that mean flowering times in Mt. Gongga were delayed in all vegetation types and elevations over the last 70 years. Furthermore, flowering time was delayed more in lowlands than at high elevations. Interestingly, we observed that spring-flowering plants show earlier flowering times whereas summer/autumn plants show delayed flowering times. Non-synchronous flowering phenology across species was mainly driven by changes in temperature and precipitation. We also found that the flowering phenology of 78.8% plant species was delayed in response to warming temperatures. Our findings also indicate that the magnitude and direction of variation in plant flowering times vary significantly among species along elevation gradients. Shifts in flowering time might cause trophic mismatches with co-occurring and related species, affecting both forest ecosystem structure and function.

植物的开花物候对其生殖发育具有重要意义,气候变化对开花物候具有重要的影响。了解开花物候对气候变化的响应,并探索这种响应在植物类群中的差异,有助于预测植物群落对持续气候变化的结构和功能变化。本文利用生物多样性热点贡嘎山(以下简称贡嘎山)33种开花植物的长期采集资料,研究了近70年来植物开花物候变化对气候变化的响应。结果表明,近70年来贡嘎山各植被类型和海拔高度的平均花期均有明显的延迟。此外,开花时间在低海拔地区比在高海拔地区更晚。有趣的是,我们观察到春季开花的植物开花时间较早,而夏季/秋季开花的植物开花时间较晚。不同种间非同步开花物候主要受温度和降水的影响。研究还发现,78.8%的植物的开花物候因温度升高而延迟。研究结果还表明,植物开花时间的变化幅度和方向在海拔梯度上存在显著差异。开花时间的变化可能导致与共生和相关物种的营养失配,影响森林生态系统的结构和功能。
{"title":"Climate change impacts flowering phenology in Gongga Mountains, Southwest China.","authors":"Kuiling Zu, Fusheng Chen, Yaoqi Li, Nawal Shrestha, Xiangmin Fang, Shahid Ahmad, Ghulam Nabi, Zhiheng Wang","doi":"10.1016/j.pld.2023.07.007","DOIUrl":"10.1016/j.pld.2023.07.007","url":null,"abstract":"<p><p>Flowering phenology of plants, which is important for reproductive growth, has been shown to be influenced by climate change. Understanding how flowering phenology responds to climate change and exploring the variation of this response across plant groups can help predict structural and functional changes in plant communities in response to ongoing climate change. Here, we used long-term collections of 33 flowering plant species from the Gongga Mountains (Mt. Gongga hereafter), a biodiversity hotspot, to investigate how plant flowering phenology changed over the past 70 years in response to climate change. We found that mean flowering times in Mt. Gongga were delayed in all vegetation types and elevations over the last 70 years. Furthermore, flowering time was delayed more in lowlands than at high elevations. Interestingly, we observed that spring-flowering plants show earlier flowering times whereas summer/autumn plants show delayed flowering times. Non-synchronous flowering phenology across species was mainly driven by changes in temperature and precipitation. We also found that the flowering phenology of 78.8% plant species was delayed in response to warming temperatures. Our findings also indicate that the magnitude and direction of variation in plant flowering times vary significantly among species along elevation gradients. Shifts in flowering time might cause trophic mismatches with co-occurring and related species, affecting both forest ecosystem structure and function.</p>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"63 1","pages":"774-782"},"PeriodicalIF":4.6,"publicationDate":"2023-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11725964/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89770697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Functional diversity in an Andean subpáramo affected by wildfire in Colombia 受哥伦比亚野火影响的安第斯山脉subpáramo的功能多样性
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-07-01 DOI: 10.1016/j.pld.2022.11.007
Korina Ocampo-Zuleta , Ángela Parrado-Rosselli

Recently, the Andean subpáramo in Colombia has experienced severe wildfires, but little is known about the functional composition of recovering or not after a wildfire. Therefore, we examined the functional community composition subpáramo affected by fire in 2016. We documented how functional traits changed 31 months after the disturbance and compared them with an unburned site. We sampled from one to two years after the fire every four months, then registered all recruits in 16 5 × 5m plots. New individuals were classified into strategy functional groups based on the traits of persistence and dispersal. The first group was stem type and regeneration mechanism (seedling and resprout), and the second was fruit type and dispersal mode. We investigated the degree to which functional diversity changes plant communities over time (woody and non-woody), and we compared it with an unburned site. The most relevant results showed that resprouts and seed regenerated increased post-fire time and significant differences between sampling periods. The anemochory is the most relevant dispersal mode that indicates the community capacity to colonize the new gaps opened by the fire rapidly. We discuss how wildfire appears to be a triggering factor for persistence and dispersal strategy groups in subpáramo burned given their characteristics of tolerance to stress. For this reason, a greater functional divergence between the ecosystems studied post-fire recovery has been related to higher levels of biodiversity at the landscape scale due to the high degree of endemism and significant differences in species composition between páramos.

最近,哥伦比亚的安第斯亚地区经历了严重的野火,但人们对野火后恢复或不恢复的功能组成知之甚少。因此,我们研究了2016年受火灾影响的功能性社区组成subpáramo。我们记录了扰动31个月后功能特征的变化,并将其与未燃烧的部位进行了比较。我们在火灾发生后的一到两年内每四个月进行一次抽样,然后在16个5×5米的地块内登记所有新兵。根据持续性和分散性的特点,将新个体分为策略功能组。第一组为茎型和再生机制(幼苗和呼吸),第二组为果实型和扩散模式。我们调查了功能多样性随时间变化的植物群落(木质和非木质)的程度,并将其与未燃烧的地点进行了比较。最相关的结果表明,重新播种和种子再生增加了火灾后的时间,并且采样周期之间存在显著差异。风团是最相关的疏散模式,表明社区有能力迅速开拓火灾造成的新缺口。我们讨论了野火是如何成为subpáramo烧伤持续性和扩散策略小组的触发因素的,因为他们具有承受压力的特点。因此,火灾后恢复研究的生态系统之间的功能差异更大,这与景观尺度上的生物多样性水平更高有关,这是由于高度的地方性和帕拉莫斯之间物种组成的显著差异。
{"title":"Functional diversity in an Andean subpáramo affected by wildfire in Colombia","authors":"Korina Ocampo-Zuleta ,&nbsp;Ángela Parrado-Rosselli","doi":"10.1016/j.pld.2022.11.007","DOIUrl":"10.1016/j.pld.2022.11.007","url":null,"abstract":"<div><p>Recently, the Andean subpáramo in Colombia has experienced severe wildfires, but little is known about the functional composition of recovering or not after a wildfire. Therefore, we examined the functional community composition subpáramo affected by fire in 2016. We documented how functional traits changed 31 months after the disturbance and compared them with an unburned site. We sampled from one to two years after the fire every four months, then registered all recruits in 16 5 × 5m plots. New individuals were classified into strategy functional groups based on the traits of persistence and dispersal. The first group was stem type and regeneration mechanism (seedling and resprout), and the second was fruit type and dispersal mode. We investigated the degree to which functional diversity changes plant communities over time (woody and non-woody), and we compared it with an unburned site. The most relevant results showed that resprouts and seed regenerated increased post-fire time and significant differences between sampling periods. The anemochory is the most relevant dispersal mode that indicates the community capacity to colonize the new gaps opened by the fire rapidly. We discuss how wildfire appears to be a triggering factor for persistence and dispersal strategy groups in subpáramo burned given their characteristics of tolerance to stress. For this reason, a greater functional divergence between the ecosystems studied post-fire recovery has been related to higher levels of biodiversity at the landscape scale due to the high degree of endemism and significant differences in species composition between páramos.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 4","pages":"Pages 385-396"},"PeriodicalIF":4.8,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/7e/9a/main.PMC10436060.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10052160","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Phylogeny of Trigonotis in China—with a special reference to its nutlet morphology and plastid genome 中国三角果属植物的系统发育——以其坚果形态和质体基因组为例
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-07-01 DOI: 10.1016/j.pld.2023.03.004
Xue-Min Xu , Dan-Hui Liu , Shi-Xin Zhu , Zhen-Long Wang , Zhen Wei , Quan-Ru Liu

The genus Trigonotis comprises nearly 60 species mainly distributed in East and Southeast Asia. China has the largest number of Trigonotis species in the world, with a total of 44 species, of which 38 are endemic. Nutlet morphology is useful for the taxonomic delimitation of Trigonotis. However, there are still controversial circumscriptions of nutlet shape in some species. In previous studies, interspecies phylogenetic relationships were inferred using few DNA markers and very few taxa, which possibly led to erroneous or incomplete conclusions. In this study, the nutlet morphology of 39 Trigonotis taxa and the characteristics of 34 complete chloroplast genomes (29 taxa) were investigated and analyzed. Then, the phylogenetic relationships were discussed within this genus based on complete chloroplast genomes. To the best of our knowledge, this study is the first comprehensive analysis of nutlet morphology and complete chloroplast genome of Trigonotis. Based on nutlet morphology, Trigonotis can be divided into two groups: Group 1, hemispherical or oblique tetrahedron with carpopodiums, and Group 2, inverted tetrahedron without carpopodiums. The chloroplast genome of Trigonotis exhibited a typical quadripartite structure, including 84–86 protein-coding, 37 transfer RNA, and 8 ribosomal RNA genes, with a total length of 147,247–148,986 bp. Genes in the junctions were well conserved in Trigonotis, similar to those in other Boraginaceae s.str. species. Furthermore, Trigonotis chloroplast genomes showed relatively high diversity, with more conserved genic regions than intergenic regions; in addition, we detected 14 hot spots (Pi > 0.005) in non-coding regions. Phylogenetic analyses based on chloroplast genome data identified highly resolved relationships between Trigonotis species. Specifically, Trigonotis was divided into two clades with strong support: one clade included species with hemispherical or oblique tetrahedron nutlets with carpopodiums and bracts, whereas the other clade included species with inverted tetrahedron nutlets without carpopodiums or bracts. Our results may inform future taxonomic, phylogenetic, and evolutionary studies on Boraginaceae.

Trigonotis属有近60种,主要分布在东亚和东南亚。中国是世界上三角杉种类最多的国家,共有44种,其中特有种38种。坚果形态对三角果属植物的分类划分有重要意义。然而,在一些物种中,对坚果形状的限制仍然存在争议。在以往的研究中,通过很少的DNA标记和很少的分类群来推断种间系统发育关系,这可能导致错误或不完整的结论。本研究对39个三角杉分类群的坚果形态和29个分类群34个完整叶绿体基因组的特征进行了调查和分析。然后,基于完整的叶绿体基因组,讨论了该属的系统发育关系。据我们所知,本研究首次全面分析了三角杉的坚果形态和完整的叶绿体基因组。根据坚果形态,三角果可分为两类:一类是半球形或斜四面体,有果柄;二类是倒四面体,没有果柄。三角杉叶绿体基因组具有典型的四部结构,包括84 ~ 86个蛋白质编码基因、37个转移RNA基因和8个核糖体RNA基因,总长度为147,247 ~ 148,986 bp。与其他琉璃苣科植物相似,琉璃苣属植物连接处的基因保守性较好。物种。此外,三角杉叶绿体基因组表现出较高的多样性,基因保守区多于基因间区;此外,我们还检测到14个热点(Pi >0.005)。基于叶绿体基因组数据的系统发育分析确定了三角杉种之间高度确定的关系。具体来说,三角果属被划分为两个支系,其中一个支系包括具有半球形或斜四面体坚果、果柄和苞片的物种,而另一个支系包括具有倒四面体坚果、但没有果柄和苞片的物种。本研究结果可为今后琉璃苣科植物的分类、系统发育和进化研究提供参考。
{"title":"Phylogeny of Trigonotis in China—with a special reference to its nutlet morphology and plastid genome","authors":"Xue-Min Xu ,&nbsp;Dan-Hui Liu ,&nbsp;Shi-Xin Zhu ,&nbsp;Zhen-Long Wang ,&nbsp;Zhen Wei ,&nbsp;Quan-Ru Liu","doi":"10.1016/j.pld.2023.03.004","DOIUrl":"https://doi.org/10.1016/j.pld.2023.03.004","url":null,"abstract":"<div><p>The genus <em>Trigonotis</em> comprises nearly 60 species mainly distributed in East and Southeast Asia. China has the largest number of <em>Trigonotis</em> species in the world, with a total of 44 species, of which 38 are endemic. Nutlet morphology is useful for the taxonomic delimitation of <em>Trigonotis</em>. However, there are still controversial circumscriptions of nutlet shape in some species. In previous studies, interspecies phylogenetic relationships were inferred using few DNA markers and very few taxa, which possibly led to erroneous or incomplete conclusions. In this study, the nutlet morphology of 39 <em>Trigonotis</em> taxa and the characteristics of 34 complete chloroplast genomes (29 taxa) were investigated and analyzed. Then, the phylogenetic relationships were discussed within this genus based on complete chloroplast genomes. To the best of our knowledge, this study is the first comprehensive analysis of nutlet morphology and complete chloroplast genome of <em>Trigonotis</em>. Based on nutlet morphology, <em>Trigonotis</em> can be divided into two groups: Group 1, hemispherical or oblique tetrahedron with carpopodiums, and Group 2, inverted tetrahedron without carpopodiums<em>.</em> The chloroplast genome of <em>Trigonotis</em> exhibited a typical quadripartite structure, including 84–86 protein-coding, 37 transfer RNA, and 8 ribosomal RNA genes, with a total length of 147,247–148,986 bp. Genes in the junctions were well conserved in <em>Trigonotis</em>, similar to those in other Boraginaceae s.str. species. Furthermore, <em>Trigonotis</em> chloroplast genomes showed relatively high diversity, with more conserved genic regions than intergenic regions; in addition, we detected 14 hot spots (Pi &gt; 0.005) in non-coding regions. Phylogenetic analyses based on chloroplast genome data identified highly resolved relationships between <em>Trigonotis</em> species. Specifically, <em>Trigonotis</em> was divided into two clades with strong support: one clade included species with hemispherical or oblique tetrahedron nutlets with carpopodiums and bracts, whereas the other clade included species with inverted tetrahedron nutlets without carpopodiums or bracts. Our results may inform future taxonomic, phylogenetic, and evolutionary studies on Boraginaceae.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 4","pages":"Pages 409-421"},"PeriodicalIF":4.8,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49894973","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Plant Diversity
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1