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Siwalik plant megafossil diversity in the Eastern Himalayas: A review 喜马拉雅东部西瓦里克植物巨型化石多样性综述
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2022.12.003
Mahasin Ali Khan , Sumana Mahato , Robert A. Spicer , Teresa E.V. Spicer , Ashif Ali , Taposhi Hazra , Subir Bera

The Eastern Himalayas are renowned for their high plant diversity. To understand how this modern botanical richness formed, it is critical to investigate past plant biodiversity preserved as fossils throughout the eastern Himalayan Siwalik succession (middle Miocene−early Pleistocene). Here, we present a summary of plant diversity records that document Neogene floristic and climate changes. We do this by compiling published records of megafossil plant remains, because these offer better spatial and temporal resolution than do palynological records. Analyses of the Siwalik floral assemblages based on the distribution of the nearest living relative taxa suggest that a tropical wet evergreen forest was growing in a warm humid monsoonal climate at the deposition time. This qualitative interpretation is also corroborated by published CLAMP (Climate Leaf Analysis Multivariate Program) analyses. Here, we also reconstruct the climate by applying a new common proxy WorldClim2 calibration. This allows the detection of subtle climate differences between floral assemblages free of artefacts introduced by using different methodologies and climate calibrations. An analysis of the Siwalik floras indicates that there was a gradual change in floral composition. The lower Siwalik assemblages provide evidence of a predominance of evergreen elements. An increase in deciduous elements in the floral composition is noticed towards the close of the middle Siwalik and the beginning of the upper Siwalik formation. This change reflects a climatic difference between Miocene and Plio-Pleistocene times. This review helps us to understand under what paleoenvironmental conditions plant diversity occurred and evolved in the eastern Himalayas throughout the Cenozoic.

喜马拉雅山脉东部以其高度的植物多样性而闻名。为了了解这种现代植物的丰富性是如何形成的,调查喜马拉雅山脉东部西瓦利克序列(中新世中期-更新世早期)作为化石保存的过去植物生物多样性至关重要。在这里,我们提供了一份植物多样性记录的摘要,记录了新第三纪的区系和气候变化。我们通过汇编已发表的巨型植物化石遗骸记录来做到这一点,因为这些记录比孢粉学记录提供了更好的空间和时间分辨率。根据最近生活的亲缘类群的分布对西瓦利克植物群落的分析表明,沉积时,热带湿润常绿森林生长在温暖湿润的季风气候中。这一定性解释也得到了已发表的CLAMP(气候叶片分析多变量程序)分析的证实。在这里,我们还通过应用新的通用代理WorldClim2校准来重建气候。这允许检测通过使用不同的方法和气候校准引入的无人工制品的花卉组合之间的细微气候差异。对西瓦利克植物群的分析表明,植物群的组成有一个逐渐的变化。西瓦利克下部的组合提供了常绿元素占主导地位的证据。花组成中落叶元素的增加是在中西瓦利克期结束和上西瓦利克形成期开始时注意到的。这种变化反映了中新世和上新世-更新世之间的气候差异。这篇综述有助于我们了解喜马拉雅山脉东部新生代植物多样性是在什么样的古环境条件下发生和进化的。
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引用次数: 2
Does regional species diversity resist biotic invasions? 区域物种多样性是否能抵抗生物入侵?
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2022.09.004
Qinfeng Guo , Hong Qian , Jian Zhang

The role of regional species diversity in large-scale species invasions has been largely controversial. On the one hand, it has been proposed that diversity may facilitate invasion (“diversity begets diversity”) because regions with higher diversity may indicate favorable conditions for many more species. On the other hand, high diversity may indicate high levels of niche occupation, thus making it more difficult for new species to invade. In the past, invasion biologists have evaluated how regional native and exotic richness are related. Here, we test whether the range size of exotic species may be constrained by regional native richness using plant data from three continental regions in the Northern Hemisphere, i.e., Europe, Eastern Asia, and North America. We found that regional native plant diversity is inversely related to the range size of exotic species. This result may be due to stronger species interactions such as competition in species-rich habitats that limit the establishment and spread of exotic species.

区域物种多样性在大规模物种入侵中的作用一直存在很大争议。一方面,有人提出多样性可能会促进入侵(“多样性产生多样性”),因为多样性较高的地区可能预示着更多物种的有利条件。另一方面,高多样性可能表明生态位占有率高,从而使新物种更难入侵。过去,入侵生物学家曾评估过本地和外来物种的丰富性是如何相关的。在这里,我们使用来自北半球三个大陆区域(即欧洲、东亚和北美)的植物数据来测试外来物种的范围大小是否会受到区域原生丰富度的限制。我们发现,区域原生植物多样性与外来物种的范围大小呈负相关。这一结果可能是由于更强的物种相互作用,如物种丰富的栖息地的竞争,限制了外来物种的建立和传播。
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引用次数: 4
Honoring a legend: Celebrating the life and legacy of Professor Heng Li 纪念传奇:纪念李恒教授的一生和遗产
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2023.03.003
Hui-Jun Guo, Jin-Ling Huang, Yun-Heng Ji, Rong Li, Chun-Lin Long, Qin-Er Yang, Yong-Ping Yang, Ting-Shuang Yi
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引用次数: 1
Patterns of floristic inventory and plant collections in Myanmar 缅甸植物区系调查和植物收集模式
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2023.01.008
Thant Sin Aung , Alice C. Hughes , Phyo Kay Khine , Bo Liu , Xiao-Li Shen , Ke-Ping Ma

Myanmar is one of the most biodiverse countries in the Asia–Pacific region due to a wide range of climatic and environmental heterogeneity. Floristic diversity in Myanmar is largely unknown, resulting in a lack of comprehensive conservation plans. We developed a database of higher plants in Myanmar derived from herbarium specimens and literature sources, and analyzed patterns of diversity inventories and collection inconsistencies, aiming to provide a baseline floristic data of Myanmar and act as a guide for future research efforts. We collected 1,329,354 records of 16,218 taxa. Results show that the collection densities at the township level was variable, with 5% of townships having no floristic collections. No ecoregion had an average collection density of greater than 1 specimen/km2 and the lowest collection density was found in the Kayah-Karen Montane Rainforests, which covered 8% of Myanmar's total area. The highest sampling densities were found in Mandalay Region, Chin State, and Yangon Region. Despite floristic collections over the past three centuries, knowledge of the distribution of the vast majority of plant taxa remained limited, particularly for gymnosperms, pteridophytes, and bryophytes. More botanical surveys and further analyses are needed to better describe Myanmar's floristic diversity. An important strategy to promote knowledge of the biodiversity patterns in Myanmar is to improve the collection and digitalization of specimens and to strengthen cooperation among countries.

由于广泛的气候和环境异质性,缅甸是亚太地区生物多样性最丰富的国家之一。缅甸的植物多样性在很大程度上是未知的,导致缺乏全面的保护计划。基于植物标本馆标本和文献资料,建立了缅甸高等植物数据库,分析了缅甸高等植物多样性调查模式和收集不一致性,旨在为缅甸高等植物区系研究提供基础数据,并为今后的研究工作提供指导。共收集到16218个分类群的1329354条记录。结果表明:各乡镇的植物区系密度变化较大,有5%的乡镇没有植物区系。所有生态区的平均采集密度均不大于1个/km2,最低的是克雅-克伦山地雨林,占缅甸总面积的8%。采样密度最高的是曼德勒地区、钦邦和仰光地区。尽管在过去的三个世纪里收集了植物区系,但对绝大多数植物分类群的分布的了解仍然有限,特别是对裸子植物、蕨类植物和苔藓植物。为了更好地描述缅甸的植物区系多样性,需要进行更多的植物调查和进一步的分析。促进缅甸生物多样性模式知识的一项重要战略是改善标本的收集和数字化,并加强国家间的合作。
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引用次数: 0
A method for quantifying relative competitive advantage and the combined effect of co-invasion for two invasive plants 两种入侵植物共同入侵的相对竞争优势及其综合效应的量化方法
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2023.01.005
Cong-Yan Wang , Yue Li , Chuang Li , Shan-Shan Zhong , Zhe-Lun Xu , You-Li Yu , Dao-Lin Du
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引用次数: 2
Distribution and conservation of near threatened plants in China 中国近危植物的分布与保护
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2023.02.005
Qin Liu , Tian-Tian Xue , Xiao-Xia Zhang , Xu-Dong Yang , Fei Qin , Wen-Di Zhang , Lei Wu , Rainer W. Bussmann , Sheng-Xiang Yu

Plants classified as Near Threatened (NT) are at high risk of becoming threatened because of anthropogenic interference and climate change. Especially in conservation efforts, such species have however long been overlooked. Here, we obtained 98,419 precise occurrence points for 2442 NT plants in China, and used species richness, species complementarity, and weighted endemism that consider all, endemic and narrow-ranged species in order to identify the diversity hotspots of NT plants. Then we evaluated the conservation effectiveness of current nature reserves for them. Our results indicate that the diversity hotspots of NT plants were mainly confined to southwestern and southern China, and only 35.87% of hotspots and 71.5% of species were protected by nature reserves. Numerous hotspots in southwestern China (e.g., Sichuan, Yunnan, Guangxi, and Hainan) were identified as conservation gaps. Given that NT plants include large proportions of endemic and narrow-ranged species, they represent an important value in conservation priority. So, more conservation efforts in the future should be tilted towards NT plants. Additionally, when comparing with the recently updated NT list, there are already 87 species raised to threatened categories, while 328 species were lowered to least concern, 56 species were now categorized as data deficient, and 119 species considered as uncertain due to changes of scientific names. It is essential to carry out a continuous assessment of species' threatened categories to realize targeting conservation.

由于人为干扰和气候变化,被归类为近危(NT)的植物面临着受到威胁的高风险。特别是在保护工作中,这些物种长期以来一直被忽视。在这里,我们获得了2442种中国NT植物的98419个精确发生点,并使用物种丰富度、物种互补性和加权特有性来确定NT植物的多样性热点。然后,我们评估了现有自然保护区对它们的保护效果。结果表明,NT植物多样性热点主要集中在西南和华南地区,只有35.87%的热点和71.5%的物种受到自然保护区的保护。中国西南部的许多热点地区(如四川、云南、广西和海南)被确定为保护空白。考虑到NT植物包括大量的特有物种和窄范围物种,它们在优先保护方面具有重要价值。因此,未来应将更多的保护工作向NT植物倾斜。此外,与最近更新的NT名单相比,已经有87种物种被提升为受威胁物种,328种被降低为最不受关注的物种,56种现在被归类为数据不足物种,119种因学名变化而被认为不确定。必须对物种的受威胁类别进行持续评估,以实现有针对性的保护。
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引用次数: 0
U.PhyloMaker: An R package that can generate large phylogenetic trees for plants and animals 一个R软件包,可以为植物和动物生成大型的系统发育树
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2022.12.007
Yi Jin , Hong Qian

The previously released packages of the PhyloMaker series (i.e. S.PhyloMaker, V.PhyloMaker, and V.PhyloMaker2) have been broadly used to generate phylogenetic trees for ecological and biogeographical studies. Although these packages can be used to generate phylogenetic trees for any groups of plants and animals for which megatrees are available, they focus on generating phylogenetic trees for plants based on the megatrees provided by the packages. How to use these packages to generate phylogenetic trees based on other megatrees is not straightforward. Here, we present a new tool, which is called ‘U.PhyloMaker’, and a simple R script that can be used to easily generate large phylogenetic trees for both plants and animals at a relatively fast speed.

先前发布的PhyloMaker系列软件包(即S.PhyloMaker、V.PhyloMaker和V.PhyloMaker2)已被广泛用于生成用于生态和生物地理学研究的系统发育树。尽管这些软件包可以用于为任何有巨树可用的动植物群体生成系统发育树,但它们专注于基于软件包提供的巨树为植物生成系统发育图。如何使用这些软件包在其他巨树的基础上生成系统发育树并不简单。在这里,我们介绍了一个名为“U.PhyloMaker”的新工具,以及一个简单的R脚本,该脚本可用于以相对较快的速度轻松生成植物和动物的大型系统发育树。
{"title":"U.PhyloMaker: An R package that can generate large phylogenetic trees for plants and animals","authors":"Yi Jin ,&nbsp;Hong Qian","doi":"10.1016/j.pld.2022.12.007","DOIUrl":"10.1016/j.pld.2022.12.007","url":null,"abstract":"<div><p>The previously released packages of the PhyloMaker series (i.e. S.PhyloMaker, V.PhyloMaker, and V.PhyloMaker2) have been broadly used to generate phylogenetic trees for ecological and biogeographical studies. Although these packages can be used to generate phylogenetic trees for any groups of plants and animals for which megatrees are available, they focus on generating phylogenetic trees for plants based on the megatrees provided by the packages. How to use these packages to generate phylogenetic trees based on other megatrees is not straightforward. Here, we present a new tool, which is called ‘U.PhyloMaker’, and a simple R script that can be used to easily generate large phylogenetic trees for both plants and animals at a relatively fast speed.</p></div>","PeriodicalId":20224,"journal":{"name":"Plant Diversity","volume":"45 3","pages":"Pages 347-352"},"PeriodicalIF":4.8,"publicationDate":"2023-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/4f/e0/main.PMC10311187.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9746559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
GhWRKY33 negatively regulates jasmonate-mediated plant defense to Verticillium dahliae GhWRKY33负调控茉莉酸盐介导的植物对大丽花黄萎病菌的防御
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-05-01 DOI: 10.1016/j.pld.2022.04.001
Yunrui Ji , Minghui Mou , Huimin Zhang , Ruling Wang , Songguo Wu , Yifen Jing , Haiyan Zhang , Lanxin Li , Zhifang Li , Ligang Chen

Verticillium wilt, caused by Verticillium dahliae, seriously restricts the yield and quality improvement of cotton. Previous studies have revealed the involvement of WRKY members in plant defense against V. dahliae, but the underlying mechanisms involved need to be further elucidated. Here, we demonstrated that Gossypium hirsutum WRKY DNA-binding protein 33 (GhWRKY33) functions as a negative regulator in plant defense against V. dahliae. GhWRKY33 expression is induced rapidly by V. dahliae and methyl jasmonate, and overexpression of GhWRKY33 reduces plant tolerance to V. dahliae in Arabidopsis. Quantitative RT-PCR analysis revealed that expression of several JA-associated genes was significantly repressed in GhWRKY33 overexpressing transgenic plants. Yeast one-hybrid analysis revealed that GhWRKY33 may repress the transcription of both AtERF1 and GhERF2 through its binding to their promoters. Protein–protein interaction analysis suggested that GhWRKY33 interacts with G. hirsutum JASMONATE ZIM-domain protein 3 (GhJAZ3). Similarly, overexpression of GhJAZ3 also decreases plant tolerance to V. dahliae. Furthermore, GhJAZ3 acts synergistically with GhWRKY33 to suppress both AtERF1 and GhERF2 expression. Our results imply that GhWRKY33 may negatively regulate plant tolerance to V. dahliae via the JA-mediated signaling pathway.

由大丽花黄萎病引起的黄萎病严重制约了棉花产量和品质的提高。先前的研究已经揭示了WRKY成员参与植物对大丽花的防御,但其潜在机制有待进一步阐明。在这里,我们证明了陆地棉WRKY DNA结合蛋白33(GhWRKY33)在植物防御大丽花中起负调控作用。大丽花和茉莉酸甲酯可快速诱导GhWRKY 33的表达,GhWRKY3的过表达降低了拟南芥对大丽花的耐受性。定量RT-PCR分析显示,在GhWRKY33过表达的转基因植物中,几个JA相关基因的表达受到显著抑制。酵母单杂交分析显示,GhWRKY33可能通过其与启动子的结合来抑制AtERF1和GhERF2的转录。蛋白质-蛋白质相互作用分析表明,GhWRKY33与毛滴虫ZIM结构域蛋白3(GhJAZ3)相互作用。同样,GhJAZ3的过表达也降低了植物对大丽花的耐受性。此外,GhJAZ3与GhWRKY33协同作用,抑制AtERF1和GhERF2的表达。我们的研究结果表明,GhWRKY33可能通过JA介导的信号通路对植物对大丽花的耐受性进行负调控。
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引用次数: 0
Human agricultural activities influence the flowering time of turnip in the Qinghai-Tibet Plateau 人类农业活动对青藏高原萝卜花期的影响
IF 4.8 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-04-01 DOI: 10.1016/j.pld.2023.04.002
Yan Zheng, L. Luo, Xieshengyang Li, Qian Chen, Ya Yang, Y. Duan, X. Kong, Yongping Yang
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引用次数: 0
Maintenance of andromonoecy in an autogamous species: Superior male function in male flowers of the endangered Sagittaria guayanensis. 自交物种雄雄性的维持:濒危瓜亚人马座雄花优越的雄性功能。
IF 4.6 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2023-03-31 eCollection Date: 2024-11-01 DOI: 10.1016/j.pld.2023.03.009
Sen-Tao Lyu, Ting-Ting Zou, Qi-Lin Jiang, Xiao-Fan Wang

Andromonoecy is a rare sexual system in plants. The function of additional male flowers in andromonoecious species has been widely discussed; however, few studies have taken offspring fitness into account. In addition, little is known about the mechanisms that maintain andromonoecy in autogamous species. In this study, we compared morphology, pollinator preference, pollen production and export, siring ability, natural siring success, hundred seed dry weight, and seed germination rates between male and hermaphroditic flowers in an endangered autogamous andromonoecious species, Sagittaria guayanensis. Male flowers, which are larger than hermaphroditic flowers, required fewer resources to produce. Pollinators visited male flowers more frequently than they visited hermaphroditic flowers. In addition, pollen production and export were higher in male flowers. Hand pollination demonstrated that siring ability did not differ between flower type. However, the natural siring success of male flowers was triple that of hermaphroditic flowers. The seeds sired by male flowers performed better than those sired by hermaphroditic flowers, with greater dry weight and higher germination rate. In conclusion, male flowers may be superior pollen donors for outcrossing. The maintenance of andromonoecy in S. guayanensis may result from the better performance of male flowers in male function compared to that of hermaphroditic flowers.

雌雄同体是植物中一种罕见的性系统。雄性雌雄同株植物中附加雄花的功能已被广泛讨论;然而,很少有研究考虑到后代的适应性。此外,在自交物种中维持雄雄性的机制知之甚少。在本研究中,我们比较了濒临灭绝的自交雄性雄花植物瓜亚人马座(Sagittaria guayanensis)雄花和雌雄同体花的形态、传粉者偏好、花粉产量和输出、传粉能力、自然传粉成功率、百粒干重和种子发芽率。雄花比雌雄同体花大,所需资源少。传粉者访问雄花的频率高于访问雌雄同体花的频率。此外,雄花的花粉产量和输出量较高。手传粉表明,不同花型的传粉能力没有差异。然而,雄花的自然配种成功率是雌雄同体花的三倍。雄花配种的种子比雌雄同体配种的种子干重大,发芽率高。综上所述,雄花可能是异交中较好的花粉供体。瓜蓝属植物雄蕊性的维持可能是由于雄花在雄性功能上比雌雄同体花表现得更好。
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引用次数: 0
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Plant Diversity
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